Citrus Sinensis ID: 020496

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MTCASAAVSPTLRTVTISYSELKDKNADLSMKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHHSRYNFGWSHGKEKLESGNPDMLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQILLHSRCHKGRLLYYFPAQQSNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKDGTVIPCPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVFREDFGKFSPYHAYTVIKLTQTM
ccccccccccccccEEEEccccccccHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEccccccEEEEEHHHHHHHHHccEEEccccEEEcccccccccccEEEEcccccccccccccccc
cccHHHccccccEEEEEEHHHHHcccccHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccEccccccccccccEEcccccccccccHHHHHHccHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccEEEEEEEccccccHcccccccccHHcccccccccHEEEccHHHcccccccccccccccEEEEEccccEEEEcccccEEEEEcHHHHHHHHcccEEEEcEEEEcccccccccccEEEEEcccccccEEEccccc
mtcasaavsptlRTVTISYSELKDKNADLSMKIeqgfgpnglgilsvtdvpgfsSLRQNLLHLAprlanlpedvkkdledhhsrynfgwshgkeklesgnpdmlkgsfyanplldvpttethlierypsycgsniwphsalpELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQILLHSrchkgrllyyfpaqqsncirdgdsmsswcgwhtdhasltgltcgmftkdgtvipcpdsaaglyirtrTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVfredfgkfspyhAYTVIKLTQTM
mtcasaavsptlrtvTISYSELKDKNADLSMKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHHSRynfgwshgkeklESGNPDMLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQILLHSRCHKGRLLYYFPAQQSNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKDGTVIPCPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVFredfgkfspyHAYTVIKLTQTM
MTCASAAVSPTLRTVTISYSELKDKNADLSMKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHHSRYNFGWSHGKEKLESGNPDMLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQILLHSRCHKGRLLYYFPAQQSNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKDGTVIPCPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVFREDFGKFSPYHAYTVIKLTQTM
*************TVTISY***********MKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANL*************RYNFGW**************LKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQILLHSRCHKGRLLYYFPAQQSNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKDGTVIPCPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVFREDFGKFSPYHAYTVIKL****
*************TVTISYSELKDKNADLSMKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHHSRYNFGWSHGKEKLESGNPDMLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQILLHSRCHKGRLLYYFPAQ***********SSWCGWHTDHASLTGLTCGMFTKDGT*****DSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVFREDFGKFSPYHAYTVIKLTQ**
********SPTLRTVTISYSELKDKNADLSMKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHHSRYNFGWSHGKEKLESGNPDMLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQILLHSRCHKGRLLYYFPAQQSNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKDGTVIPCPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVFREDFGKFSPYHAYTVIKLTQTM
********SPTLRTVTISYSELKDKNADLSMKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHHSRYNFGWSHGKEKLESGNPDMLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQILLHSRCHKGRLLYYFPAQQS******DSMSSWCGWHTDHASLTGLTCGMFTKDGTVIPCPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVFREDFGKFSPYHAYTVIKL****
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MTCASAAVSPTLRTVTISYSELKDKNADLSMKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHHSRYNFGWSHGKEKLESGNPDMLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQILLHSRCHKGRLLYYFPAQQSNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKDGTVIPCPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVFREDFGKFSPYHAYTVIKLTQTM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
297738867 442 unnamed protein product [Vitis vinifera] 0.904 0.665 0.814 1e-142
225445324405 PREDICTED: uncharacterized protein LOC10 0.904 0.725 0.814 1e-142
356531663382 PREDICTED: uncharacterized protein LOC10 0.901 0.767 0.786 1e-138
255549042358 conserved hypothetical protein [Ricinus 0.907 0.824 0.777 1e-137
224143477343 predicted protein [Populus trichocarpa] 0.907 0.860 0.772 1e-137
356542742382 PREDICTED: uncharacterized protein LOC10 0.901 0.767 0.783 1e-137
449443137358 PREDICTED: uncharacterized protein LOC10 0.907 0.824 0.755 1e-134
334186491357 dioxygenase domain-containing protein [A 0.904 0.823 0.735 1e-128
297790500371 predicted protein [Arabidopsis lyrata su 0.926 0.811 0.711 1e-127
326521592392 predicted protein [Hordeum vulgare subsp 0.892 0.739 0.680 1e-116
>gi|297738867|emb|CBI28112.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/297 (81%), Positives = 265/297 (89%), Gaps = 3/297 (1%)

Query: 1   MTCASAAVSPTLRTVT--ISYSELKDKNADLSMKIEQGFGPNGLGILSVTDVPGFSSLRQ 58
           M+C S A  P L+TVT  ISY EL DKNADLSMKIE+GFGPNGLGIL++ DVPGFS LRQ
Sbjct: 84  MSCKSPA-PPVLQTVTVTISYPELIDKNADLSMKIEEGFGPNGLGILTIADVPGFSLLRQ 142

Query: 59  NLLHLAPRLANLPEDVKKDLEDHHSRYNFGWSHGKEKLESGNPDMLKGSFYANPLLDVPT 118
           NLL L+PRLA+LPE+VKK+LED +SRYNFGWSHGKEKLESG PDMLKGSFYANP+LD+PT
Sbjct: 143 NLLRLSPRLASLPEEVKKELEDPNSRYNFGWSHGKEKLESGKPDMLKGSFYANPILDIPT 202

Query: 119 TETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKE 178
           TE  LI+RYPSYCG NIWP  ALPELEVAFKALGKLI+DVG M+AYHCDQYVS+ MK+KE
Sbjct: 203 TEAPLIQRYPSYCGPNIWPKHALPELEVAFKALGKLILDVGSMVAYHCDQYVSRLMKIKE 262

Query: 179 NEGLEQILLHSRCHKGRLLYYFPAQQSNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKD 238
           +EGLE+ILL SRCHKGRLLYYFPA++SNC RDGDSMSSWCGWHTDH SLTGLTCGMF +D
Sbjct: 263 DEGLEKILLRSRCHKGRLLYYFPAEKSNCSRDGDSMSSWCGWHTDHGSLTGLTCGMFMRD 322

Query: 239 GTVIPCPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRV 295
              IPCPDSAAGLYI+TRTDQIVKVVF EDEIAYQIGET EILSR YLCATPHCVR 
Sbjct: 323 AVEIPCPDSAAGLYIKTRTDQIVKVVFGEDEIAYQIGETAEILSRGYLCATPHCVRA 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445324|ref|XP_002284748.1| PREDICTED: uncharacterized protein LOC100256125 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531663|ref|XP_003534396.1| PREDICTED: uncharacterized protein LOC100811760 [Glycine max] Back     alignment and taxonomy information
>gi|255549042|ref|XP_002515577.1| conserved hypothetical protein [Ricinus communis] gi|223545521|gb|EEF47026.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224143477|ref|XP_002324969.1| predicted protein [Populus trichocarpa] gi|222866403|gb|EEF03534.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356542742|ref|XP_003539824.1| PREDICTED: uncharacterized protein LOC100802243 [Glycine max] Back     alignment and taxonomy information
>gi|449443137|ref|XP_004139337.1| PREDICTED: uncharacterized protein LOC101206989 [Cucumis sativus] gi|449518117|ref|XP_004166090.1| PREDICTED: uncharacterized LOC101206989 [Cucumis sativus] Back     alignment and taxonomy information
>gi|334186491|ref|NP_193076.3| dioxygenase domain-containing protein [Arabidopsis thaliana] gi|332657875|gb|AEE83275.1| dioxygenase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297790500|ref|XP_002863135.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297308969|gb|EFH39394.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|326521592|dbj|BAK00372.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
ASPGD|ASPL0000056906362 AN0427 [Emericella nidulans (t 0.716 0.643 0.344 4.2e-31
CGD|CAL0003928454 orf19.6606 [Candida albicans ( 0.350 0.251 0.367 3e-20
UNIPROTKB|Q59NK9454 CaO19.6606 "Putative uncharact 0.350 0.251 0.367 3e-20
TAIR|locus:2077289403 AT3G63290 [Arabidopsis thalian 0.578 0.466 0.286 3.1e-08
ASPGD|ASPL0000056906 AN0427 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 86/250 (34%), Positives = 122/250 (48%)

Query:    13 RTVTISYSELKDKNADLSMKIEQGFGPNGLGILSVTDV-PGFSSLRQNLLHLAPRLANLP 71
             + VT+S  EL D        + + FGP+ LGI+ V D+ P F  LR  +L  A  +A L 
Sbjct:    10 QAVTVSLQELIDGTVSFDT-LTEAFGPSSLGIIVVKDLDPKFQHLRAQVLSNASYVAALK 68

Query:    72 EDVKKDLEDHHSRYNFGWSHGKEKLESGNPDMLKGSFYAN------PLLDVPTTETHLIE 125
              D  + L    ++Y  GWS GKE L SG+ D LKGS+Y N      P L    ++ H   
Sbjct:    69 NDELESLTSPSAKYLIGWSCGKETLRSGHFDTLKGSYYVNCAFYKDPSLQGAPSDEH--P 126

Query:   126 RYPSYCGSNIWPH-SALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQ 184
               P Y   NIWP    LP      + L +LI+D  +++A  CD+Y    ++  +   LE+
Sbjct:   127 DLPEYTAPNIWPDVQKLPNFRSGLEELCRLIIDTAVLVARACDRYAEGNIEGYKAGYLEK 186

Query:   185 ILLHSRCHKGRLLYYFPA------QQSNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKD 238
             ++  S   K RLL+YFPA      +++    + +    WC  H DH  LTGLT  MF  +
Sbjct:   187 VVRGSLTTKARLLHYFPAPDGVHAEEARKDEENEEDDDWCATHLDHGCLTGLTSAMFVDE 246

Query:   239 GTVIPCPDSA 248
                 P   SA
Sbjct:   247 DAHPPASSSA 256
GO:0008150 "biological_process" evidence=ND
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
CGD|CAL0003928 orf19.6606 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59NK9 CaO19.6606 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
TAIR|locus:2077289 AT3G63290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016790001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (405 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-10
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-05
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information 
 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 59/256 (23%), Positives = 89/256 (34%), Gaps = 40/256 (15%)

Query: 43  GILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHHSRYNFGWSHGKEKLESGNPD 102
           G   + +    ++L      LA +   LP + K  +     R + G++    +L  G PD
Sbjct: 37  GFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRGYTPHGGELTDGEPD 96

Query: 103 MLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLML 162
             K      P LD                G N+WP  A+P L  A     + +  VGL L
Sbjct: 97  -YKEGLDMGPDLDAELAGVRAGTPLH---GPNLWP--AIPGLRDALLQYYRAMTAVGLRL 150

Query: 163 AYHCDQYVSKGMKMKENEGLEQILLHSRCHKG----RLLYYFPAQQSNCIRDGDSMSSWC 218
                + ++ G+       L +     R        RLL Y P++ +    DG       
Sbjct: 151 L----RAIALGL------DLPEDFFDKRTSDPNSVLRLLRY-PSRPAREGADGV------ 193

Query: 219 GWHTDHASLTGLTCGMFTKDGTVIPCPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETT 278
           G HTD+  LT L               D   GL +R      + V      +   IG+  
Sbjct: 194 GAHTDYGLLTLLF-------------QDDVGGLEVRPPNGGWLDVPPIPGTLVVNIGDML 240

Query: 279 EILSRSYLCATPHCVR 294
           E  +   L +T H VR
Sbjct: 241 ERWTNGRLRSTVHRVR 256

Length = 322
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216357 protein SRG1 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02704335 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.91
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.9
PLN03176120 flavanone-3-hydroxylase; Provisional 99.68
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.93
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 93.28
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 90.59
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-70  Score=489.03  Aligned_cols=275  Identities=23%  Similarity=0.250  Sum_probs=241.6

Q ss_pred             CccceEEecccccCcc----hHHHHHHHHhhCCCCceEEEEEcCCCChHHHHHHHHHhhHHhCCChhhhhhhccCCCCCc
Q 020496           11 TLRTVTISYSELKDKN----ADLSMKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHHSRYN   86 (325)
Q Consensus        11 ~~~ip~Id~~~l~~~~----~~~~~~l~~A~~~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~   86 (325)
                      +..+|+||++.+...+    ..++.+|++||++  +|||||+||||+.++++++++++++||+||.|+|+++.+......
T Consensus         3 ~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~--~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~   80 (322)
T COG3491           3 TRDLPIIDLSELAGSDPGARRRVAQELRAACRE--IGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQH   80 (322)
T ss_pred             CCcCceeccHHhcCCCcHHHHHHHHHHHHHHHh--CCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccc
Confidence            4589999999998743    4789999999999  999999999999999999999999999999999999998877779


Q ss_pred             ccccc-CcccccCCCCCCcccceecCCCCCCCCCchhhhhcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 020496           87 FGWSH-GKEKLESGNPDMLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYH  165 (325)
Q Consensus        87 ~GY~~-~~e~~~~g~~~d~kE~f~~~~~~~~p~~~~~~~~~~~~~~~~n~wP~~~~~~f~~~~~~y~~~~~~l~~~l~~~  165 (325)
                      +||.+ +.|.+ .|.. ||||.|+++.  +.+...+ ....+..++++|+||  .+|+||+.+..|++.|.+++.+||++
T Consensus        81 rGY~~~~~E~t-~g~~-d~kE~~d~g~--~~~~~~~-~~~~~~~~~gpN~wP--~ip~~r~~ll~~~~~~~~~~~rLL~a  153 (322)
T COG3491          81 RGYTPHGGELT-DGEP-DYKEGLDMGP--DLDAELA-GVRAGTPLHGPNLWP--AIPGLRDALLQYYRAMTAVGLRLLRA  153 (322)
T ss_pred             cccccCccccc-CCcc-chhhhccccc--ccccccC-CCccCCCcCCCCCCc--cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998 55554 4665 6999999997  4443322 122333447999999  39999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcchhHHHHhhcCCCcceeeccCCCCCCCCcccCCCCCCCcccccccccccccccccccccCCCccCCC
Q 020496          166 CDQYVSKGMKMKENEGLEQILLHSRCHKGRLLYYFPAQQSNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKDGTVIPCP  245 (325)
Q Consensus       166 l~~~i~~~Lgl~~~~~~~~~~~~~~~~~lrl~~Ypp~~~~~~~~~~~~~~~~~~~HtD~g~lTlL~~~~~~~~~~~~~~~  245 (325)
                      |+    ++|++ ++++|+..+.++.. .+|++|||+.+...    +   ..+.|+|||+|+||||             +|
T Consensus       154 iA----~~LdL-~~d~Fd~~~~d~~~-~~RLlrYP~~~~~~----~---~~~~GaHtD~G~lTLl-------------~Q  207 (322)
T COG3491         154 IA----LGLDL-PEDFFDKRTSDPNS-VLRLLRYPSRPARE----G---ADGVGAHTDYGLLTLL-------------FQ  207 (322)
T ss_pred             HH----HHcCC-ChhhhhhccCCchh-eEEEEecCCCcccc----c---ccccccccCCCeEEEE-------------Ee
Confidence            65    89999 89999998766665 99999999987654    2   5567999999999999             88


Q ss_pred             CCCCceEEEcCCCcEEEeccCCCeEEEEchhHHHHhhCCeeecccceeecCCcCCCCceeEEEeeccCCCCccccccC
Q 020496          246 DSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVFREDFGKFSPYHAYTVIKLTQ  323 (325)
Q Consensus       246 d~~~GLqV~~~~g~W~~V~p~~g~lvVnvGd~l~~~TnG~~kst~HRV~~~~~~~~~~R~Si~~F~~P~~d~~i~p~~  323 (325)
                      |+++||||+++.|+|++|+|.||++|||+||+||+||||+||||+|||+.+++   .+||||+||+.|+.|++|.|..
T Consensus       208 d~~~GLqv~~~~g~Wl~v~P~pgtlvVNiGdmLe~~Tng~lrST~HRV~~~~~---~~R~SipfF~~p~~Da~I~Pl~  282 (322)
T COG3491         208 DDVGGLEVRPPNGGWLDVPPIPGTLVVNIGDMLERWTNGRLRSTVHRVRNPPG---VDRYSIPFFLEPNFDAEIAPLL  282 (322)
T ss_pred             cccCCeEEecCCCCeeECCCCCCeEEEeHHHHHHHHhCCeeccccceeecCCC---ccceeeeeeccCCCCccccccC
Confidence            99999999998899999999999999999999999999999999999999984   7999999999999999999854

>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 5e-11
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-07
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 4e-05
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 31/233 (13%), Positives = 65/233 (27%), Gaps = 28/233 (12%)

Query: 69  NLPEDVKKDLE-DHHSRYNFGWSHGKEKLESGNPDMLKGSFYANPLLDVPTTETHLIERY 127
           ++  + K DL    +++ +         L       ++   Y NP  +       +  + 
Sbjct: 64  SITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNP--NFTPDHPRIQAKT 121

Query: 128 PSYCGSNIWP-HSALPELEVAFKALGKLIVDVGLMLAYHCDQYVSKGMKMKENEGLEQIL 186
           P++   N+WP  +  P  +   +     +  +   L     +  +  +  +EN       
Sbjct: 122 PTH-EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALL----KGYALALGKEENFFARHFK 176

Query: 187 LHSRCHKGRLLYYFPAQQSNCIRDGDSMSSW---CGWHTDHASLTGLTCGMFTKDGTVIP 243
                    L+ Y             +         WH D + +T L             
Sbjct: 177 PDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVL------------- 223

Query: 244 CPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVL 296
              +   L + T       +   +       G     L+ +Y  A  H  RV 
Sbjct: 224 YQSNVQNLQVETA-AGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIH--RVK 273
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 92.35
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 89.64
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 87.69
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 83.02
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=7.7e-71  Score=512.72  Aligned_cols=277  Identities=19%  Similarity=0.185  Sum_probs=238.1

Q ss_pred             CccceEEecccccCcchHHHHHHHHhhCCCCceEEEEEcCCCChHHHHHHHHHhhHHhCCChhhhhhhccCCCCCccccc
Q 020496           11 TLRTVTISYSELKDKNADLSMKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHHSRYNFGWS   90 (325)
Q Consensus        11 ~~~ip~Id~~~l~~~~~~~~~~l~~A~~~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~GY~   90 (325)
                      .++||+|||+.|.+.+++++++|.+||++  ||||||+||||+.++++++++.+++||+||.|+|+++... ...++||.
T Consensus         4 ~~~iPvIDls~~~~~~~~~~~~l~~A~~~--~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~-~~~~~Gy~   80 (312)
T 3oox_A            4 TSAIDPVSFSLYAKDFTRFAQELGASFER--YGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGV-KGGARGYI   80 (312)
T ss_dssp             CCSSCCEETHHHHHCHHHHHHHHHHHHHH--HSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSS-GGGTSEEE
T ss_pred             CCCCCeEEChHhcccHHHHHHHHHHHHHh--CcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccC-CCCccccc
Confidence            35799999999976666889999999999  9999999999999999999999999999999999999875 44689998


Q ss_pred             c-CcccccCCCCCCcccceecCCCCCCCCCchhhhhcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020496           91 H-GKEKLESGNPDMLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHSALPELEVAFKALGKLIVDVGLMLAYHCDQY  169 (325)
Q Consensus        91 ~-~~e~~~~g~~~d~kE~f~~~~~~~~p~~~~~~~~~~~~~~~~n~wP~~~~~~f~~~~~~y~~~~~~l~~~l~~~l~~~  169 (325)
                      + +.|........|+||+|+++.  +.+.+++.     .....+|+||++ +|+||+++++|+++|.+|+..|+++|+  
T Consensus        81 ~~g~e~~~~~~~~D~kE~~~~~~--~~~~~~~~-----~~~~~~n~wP~~-~p~fr~~~~~y~~~~~~l~~~ll~~la--  150 (312)
T 3oox_A           81 PFGVETAKGADHYDLKEFWHMGR--DLPPGHRF-----RAHMADNVWPAE-IPAFKHDVSWLYNSLDGMGGKVLEAIA--  150 (312)
T ss_dssp             CCCCCCSTTSCSCCCCEEEEECC--CCCTTCGG-----GGTSCCCCCCTT-STTHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             cccceecCCCCCCCceeeeEeec--CCCcCCcc-----hhccCCCCCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            7 666554334457999999985  34433321     112467999984 899999999999999999999999975  


Q ss_pred             HHhcCCCCcchhHHHHhhcCCCcceeeccCCCCCCCCcccCCCCCCCcccccccccccccccccccccCCCccCCCCCCC
Q 020496          170 VSKGMKMKENEGLEQILLHSRCHKGRLLYYFPAQQSNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKDGTVIPCPDSAA  249 (325)
Q Consensus       170 i~~~Lgl~~~~~~~~~~~~~~~~~lrl~~Ypp~~~~~~~~~~~~~~~~~~~HtD~g~lTlL~~~~~~~~~~~~~~~d~~~  249 (325)
                        ++||+ ++++|++.+.++.+ .||++||||++.+.   .    .+|+++|||+|+||||             +||+++
T Consensus       151 --~~Lgl-~~~~f~~~~~~~~~-~lr~~~Ypp~~~~~---~----~~g~~~HtD~g~lTlL-------------~qd~v~  206 (312)
T 3oox_A          151 --TYLKL-ERDFFKPTVQDGNS-VLRLLHYPPIPKDA---T----GVRAGAHGDINTITLL-------------LGAEEG  206 (312)
T ss_dssp             --HHTTS-CTTTTHHHHTTCCC-EEEEEEECCCSSCC---C------CEEEECCCSSEEEE-------------ECCTTS
T ss_pred             --HHhCc-CHHHHHHHhcCCcc-eeeeEecCCCCCCc---C----CcCccceecCceEEEE-------------eEcCcC
Confidence              88999 78899998877665 89999999998653   1    4899999999999999             778999


Q ss_pred             ceEEEcCCCcEEEeccCCCeEEEEchhHHHHhhCCeeecccceeecCCcC-CCCceeEEEeeccCCCCccccccCC
Q 020496          250 GLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSII-HFVFREDFGKFSPYHAYTVIKLTQT  324 (325)
Q Consensus       250 GLqV~~~~g~W~~V~p~~g~lvVnvGd~l~~~TnG~~kst~HRV~~~~~~-~~~~R~Si~~F~~P~~d~~i~p~~~  324 (325)
                      ||||++++|+|++|+|+||++||||||+||+||||+||||+|||++++.. ...+|||++||++|+.|++|+|.+.
T Consensus       207 GLqV~~~~g~W~~V~p~pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~  282 (312)
T 3oox_A          207 GLEVLDRDGQWLPINPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQN  282 (312)
T ss_dssp             CEEEECTTSCEEECCCCSSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGG
T ss_pred             ceEEECCCCcEEECCCCCCeEEEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCcc
Confidence            99999889999999999999999999999999999999999999987542 2478999999999999999999864
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 91.9
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Isopenicillin N synthase
species: Emericella nidulans [TaxId: 162425]

Probab=100.00  E-value=1.1e-61  Score=452.15  Aligned_cols=286  Identities=14%  Similarity=0.108  Sum_probs=221.8

Q ss_pred             CCCccceEEecccccCcch----HHHHHHHHhhCCCCceEEEEEcCCCChHHHHHHHHHhhHHhCCChhhhhhhccCC-C
Q 020496            9 SPTLRTVTISYSELKDKNA----DLSMKIEQGFGPNGLGILSVTDVPGFSSLRQNLLHLAPRLANLPEDVKKDLEDHH-S   83 (325)
Q Consensus         9 ~~~~~ip~Id~~~l~~~~~----~~~~~l~~A~~~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~   83 (325)
                      +..++||+|||+.|.++++    +++++|.+||++  +|||||+||||+.+++.++.+.  .||.+|.|+|+++.... .
T Consensus         2 ~s~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~--~GFf~l~nHGI~~~~i~~~~~~--ff~~l~~eek~~~~~~~~~   77 (329)
T d1odma_           2 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRD--TGFFYAVNHGINVQRLSQKTKE--FHMSITPEEKWDLAIRAYN   77 (329)
T ss_dssp             CCBCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHT--TSEEEEESCCCCHHHHHHHHHH--HHHHCCHHHHHHHBCTTTC
T ss_pred             CCCCCCCcEEchhhcCCCHHHHHHHHHHHHHHHHc--CeEEEEEeCCCCHHHHHHHHHH--hcccCCHHHHHhhcccccc
Confidence            5678999999999987654    568899999998  9999999999999887776542  35699999999997543 2


Q ss_pred             CCccccccCcccccCCCCCCcccceecCCCCCCCCCchhhhhcCCCCCCCCCCCCC-CchhHHHHHHHHHHHHHHHHHHH
Q 020496           84 RYNFGWSHGKEKLESGNPDMLKGSFYANPLLDVPTTETHLIERYPSYCGSNIWPHS-ALPELEVAFKALGKLIVDVGLML  162 (325)
Q Consensus        84 ~~~~GY~~~~e~~~~g~~~d~kE~f~~~~~~~~p~~~~~~~~~~~~~~~~n~wP~~-~~~~f~~~~~~y~~~~~~l~~~l  162 (325)
                      ...+||..++.....+..+++++.+..+.  +.+.+++......+ ...+|.||++ .+|+||+.+++|+++|.+|+..|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~n~wP~~~~~p~fr~~~~~y~~~~~~la~~l  154 (329)
T d1odma_          78 KEHQDQVRAGYYLSIPGKKAVESFCYLNP--NFTPDHPRIQAKTP-THEVNVWPDETKHPGFQDFAEQYYWDVFGLSSAL  154 (329)
T ss_dssp             TTCTTCSSSEEECCBTTTBCCEEEEECCT--TCCTTSHHHHTTCT-TCCCCCCCCTTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcccccccccCCCccccceeeeccc--ccccccccccccCC-ccccccCccccccchHHHHHHHHHHHhhhhheee
Confidence            23445544333222233345777776665  44444443333333 3688999975 57899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchhHHHHhhcCC-CcceeeccCCCCCC---CCcccCCCCCCCcccccccccccccccccccccC
Q 020496          163 AYHCDQYVSKGMKMKENEGLEQILLHSR-CHKGRLLYYFPAQQ---SNCIRDGDSMSSWCGWHTDHASLTGLTCGMFTKD  238 (325)
Q Consensus       163 ~~~l~~~i~~~Lgl~~~~~~~~~~~~~~-~~~lrl~~Ypp~~~---~~~~~~~~~~~~~~~~HtD~g~lTlL~~~~~~~~  238 (325)
                      +++|+    ++||+ ++++|...+.... .+.+|++|||+.+.   ........+..+|+++|||+|+||||        
T Consensus       155 l~~la----~~Lgl-~~~~f~~~~~~~~~~~~~~~l~y~~~~~~~~~~~~~~~~~~~~g~~~HtD~g~lTlL--------  221 (329)
T d1odma_         155 LKGYA----LALGK-EENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVL--------  221 (329)
T ss_dssp             HHHHH----HHTTS-CTTTTGGGCCTTTCCCEEEEEEECCCSSCCGGGCEECTTSCEEEEEEECCSSSEEEE--------
T ss_pred             hhhhH----hhcCc-cHHHHHHHhhccccchhhhccccccCCCCCchhccccccccccccccCCCcccccee--------
Confidence            99975    88999 7888887665322 22677777776543   22111122346899999999999999        


Q ss_pred             CCccCCCCCCCceEEEcCCCcEEEeccCCCeEEEEchhHHHHhhCCeeecccceeecCCcCCCCceeEEEeeccCCCCcc
Q 020496          239 GTVIPCPDSAAGLYIRTRTDQIVKVVFREDEIAYQIGETTEILSRSYLCATPHCVRVLSIIHFVFREDFGKFSPYHAYTV  318 (325)
Q Consensus       239 ~~~~~~~d~~~GLqV~~~~g~W~~V~p~~g~lvVnvGd~l~~~TnG~~kst~HRV~~~~~~~~~~R~Si~~F~~P~~d~~  318 (325)
                           +||+++||||+++ |.|++|+|.+|++|||+||+||+||||+||||+|||+.+.    .+|||++||++|+.|++
T Consensus       222 -----~qd~~~GLqv~~~-~~W~~v~~~~~~~vVN~Gd~l~~~Tng~~kst~HRV~~~~----~~R~Si~~F~~P~~d~~  291 (329)
T d1odma_         222 -----YQSNVQNLQVETA-AGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVN----AERQSLPFFVNLGYDSV  291 (329)
T ss_dssp             -----EECSSCCEEEEET-TEEEECCCCTTSEEEEECHHHHHHTTTSSCCCCEEEECCC----SCEEEEEEEECCCTTCB
T ss_pred             -----ecccceeeeeecc-CCceeeccccceEEEehhhhHHHHhCCEecCCCceecCCC----CCEEEEEEEECCCCCCE
Confidence                 6789999999986 5599999999999999999999999999999999999875    67999999999999999


Q ss_pred             ccccCC
Q 020496          319 IKLTQT  324 (325)
Q Consensus       319 i~p~~~  324 (325)
                      |+|++.
T Consensus       292 i~pl~~  297 (329)
T d1odma_         292 IDPFDP  297 (329)
T ss_dssp             CCCCCT
T ss_pred             EeCCcc
Confidence            999863
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure