Citrus Sinensis ID: 020502

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
cEEEEEEccccccEEEEEEcccccHHHHHHHccccccEEEEEEEEEEEccccccccccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEccccEEEEEEEcccHHHHHHHHHHccccccccEEEEEEEccEEEEEEEcccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHcccHHHHHccccEEEEEcccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHcccccEEEEEccccccccccc
cEEEEEEccccccEEEEEEcccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEcccEEEEEEccccHHHHHHHHHHccHcccccEEEEEEccccEEEEEEEccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHHccHHHHHccccEEEEEcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccHHHHHHHHHcccHEEEEEEcHHEHHHHccc
mkilrrnlvengpgsvkmepvdsddlwfaynliapgdsvMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVdydkegsvlrirgknilenehvkiGAFHTLEIELHRAFVLRKDLWDSlaldtlhqaadptaSADLAVVLMQEGLAHILLVGRsmtitrsrietsiprkhgpaiaGYESALNKFFENVLQAFLKHVDFNVVRCaviaspgftkdqFHRHLLLEAERRQLRPIIENKSRIILVHTssgykhslrevldapnvmnmiKDTKAAQEVQALKDFFNMltndptracygpkhvEVAHERMAVQTLLITDDLFRLVCSKS
mkilrrnlvengpgsvkmepvDSDDLWFAYNLIAPGDSVMAVTVRKVLRQmasgsrdaervklkleikvevvdydkegsvlrirgknilenehVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRietsiprkhgpAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRqlrpiienksriilvhtssgykhslrEVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERvklkleikvevvDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
***********************DDLWFAYNLIAPGDSVMAVTVRKVLRQMA*****AERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVC***
MKIL*******GPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTV*******************KLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRI********************KFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVC***
MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
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MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCSKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query325 2.2.26 [Sep-21-2011]
P48612395 Protein pelota OS=Drosoph yes no 0.981 0.807 0.504 1e-95
Q9BRX2385 Protein pelota homolog OS yes no 0.981 0.828 0.473 2e-88
Q5RCE3385 Protein pelota homolog OS yes no 0.981 0.828 0.473 2e-88
Q5U567383 Protein pelota homolog OS N/A no 0.981 0.832 0.482 3e-88
Q58DV0385 Protein pelota homolog OS yes no 0.981 0.828 0.467 6e-88
Q7ZWC4385 Protein pelota homolog OS yes no 0.981 0.828 0.463 8e-88
Q5XIP1385 Protein pelota homolog OS yes no 0.981 0.828 0.463 1e-87
Q5ZK01385 Protein pelota homolog OS yes no 0.981 0.828 0.460 2e-87
Q80X73385 Protein pelota homolog OS yes no 0.981 0.828 0.457 6e-87
P50444381 Uncharacterized protein R yes no 0.981 0.837 0.413 4e-70
>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2 Back     alignment and function desciption
 Score =  349 bits (896), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 161/319 (50%), Positives = 235/319 (73%)

Query: 1   MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAER 60
           MK+L + + +   G+V + P +S+D+W AYNLIA GDSV + T+RKV  + A+GS  + R
Sbjct: 1   MKLLGKYVDKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNETATGSSTSSR 60

Query: 61  VKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSL 120
           V+  L I VE +D+D +  VLR++G+NI EN++VK+GA+HTL++EL+R F LRK  WD++
Sbjct: 61  VRTTLTIAVESIDFDTQACVLRLKGRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTI 120

Query: 121 ALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYES 180
           AL+ +  A DPT SAD+A V+MQEGLAH+ L+  SMT+ RS+IE SIPRK   ++  +E 
Sbjct: 121 ALERIEMACDPTQSADVAAVVMQEGLAHVCLITASMTLVRSKIEVSIPRKRKGSVQQHEK 180

Query: 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240
            L KF+E V+Q+ L+HV+F+VV+C +IASPGF +DQF+ ++  +A +   + +++NKS+ 
Sbjct: 181 GLAKFYEQVMQSILRHVNFDVVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKF 240

Query: 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVE 300
           +LVH SSG+KHSLRE+L  P V+  + DTKAA EV+AL+ F+ ML  +P +A YG KHV 
Sbjct: 241 MLVHASSGFKHSLREILQDPAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVL 300

Query: 301 VAHERMAVQTLLITDDLFR 319
            A E  A++TLLI+D+LFR
Sbjct: 301 QAAESQAIETLLISDNLFR 319
Required prior to the first meiotic division for spindle formation and nuclear envelope breakdown during spermatogenesis. It is also required for normal eye patterning and for mitotic divisions in the ovary. Required for ovarian germ line stem cell self-renewal. May play a role in regulating translation. May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2 Back     alignment and function description
>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2 Back     alignment and function description
>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1 Back     alignment and function description
>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3 Back     alignment and function description
>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
225431029378 PREDICTED: protein pelota [Vitis vinifer 0.981 0.843 0.899 1e-169
255543102378 pelota, putative [Ricinus communis] gi|2 0.981 0.843 0.865 1e-166
449442249379 PREDICTED: protein pelota-like [Cucumis 0.981 0.841 0.868 1e-164
224082576377 predicted protein [Populus trichocarpa] 0.978 0.843 0.868 1e-162
363807988379 uncharacterized protein LOC100793935 [Gl 0.981 0.841 0.856 1e-162
356535240379 PREDICTED: protein pelota-like [Glycine 0.981 0.841 0.856 1e-161
297799208378 hypothetical protein ARALYDRAFT_492022 [ 0.981 0.843 0.830 1e-155
30687676378 Eukaryotic release factor 1 (eRF1) famil 0.981 0.843 0.827 1e-155
116310865378 OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sa 0.981 0.843 0.771 1e-147
38345200378 OSJNBa0015K02.10 [Oryza sativa Japonica 0.981 0.843 0.771 1e-146
>gi|225431029|ref|XP_002279875.1| PREDICTED: protein pelota [Vitis vinifera] gi|297735305|emb|CBI17667.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 287/319 (89%), Positives = 306/319 (95%)

Query: 1   MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAER 60
           MKI+RR+LV NGPGSVKM PVDSDDLW+AYNLIAPGD+V+AVTVRKVLR++ASG RDAER
Sbjct: 1   MKIIRRDLVANGPGSVKMVPVDSDDLWYAYNLIAPGDTVLAVTVRKVLREVASGGRDAER 60

Query: 61  VKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSL 120
           VKLKLEIKVEV DYDK GSVLRIRGKNILENE+VKIG FHTLEIE HR FVLRK +WDSL
Sbjct: 61  VKLKLEIKVEVADYDKVGSVLRIRGKNILENEYVKIGQFHTLEIEQHRPFVLRKVVWDSL 120

Query: 121 ALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYES 180
           ALDTL+QA+DP ASADLAVVLMQEGLAH++L+GRS+TITRSRIE SIPRKHGPAIAGYE+
Sbjct: 121 ALDTLNQASDPAASADLAVVLMQEGLAHVILIGRSLTITRSRIEASIPRKHGPAIAGYEA 180

Query: 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240
           ALNKFFENVLQAFLK+VDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLR IIENKSRI
Sbjct: 181 ALNKFFENVLQAFLKYVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRSIIENKSRI 240

Query: 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVE 300
           ILVHTSSGYKHSL+EVLDAPNVMNMIKDTKAAQEVQALKDFFNML+NDP RACYGPKHVE
Sbjct: 241 ILVHTSSGYKHSLKEVLDAPNVMNMIKDTKAAQEVQALKDFFNMLSNDPARACYGPKHVE 300

Query: 301 VAHERMAVQTLLITDDLFR 319
           VAHERMAVQTLLITDDLFR
Sbjct: 301 VAHERMAVQTLLITDDLFR 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543102|ref|XP_002512614.1| pelota, putative [Ricinus communis] gi|223548575|gb|EEF50066.1| pelota, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449442249|ref|XP_004138894.1| PREDICTED: protein pelota-like [Cucumis sativus] gi|449477765|ref|XP_004155116.1| PREDICTED: protein pelota-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224082576|ref|XP_002306749.1| predicted protein [Populus trichocarpa] gi|222856198|gb|EEE93745.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807988|ref|NP_001242204.1| uncharacterized protein LOC100793935 [Glycine max] gi|255640054|gb|ACU20318.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356535240|ref|XP_003536156.1| PREDICTED: protein pelota-like [Glycine max] Back     alignment and taxonomy information
>gi|297799208|ref|XP_002867488.1| hypothetical protein ARALYDRAFT_492022 [Arabidopsis lyrata subsp. lyrata] gi|297313324|gb|EFH43747.1| hypothetical protein ARALYDRAFT_492022 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30687676|ref|NP_194495.3| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] gi|3941543|gb|AAC82379.1| pelota [Arabidopsis thaliana] gi|4469016|emb|CAB38277.1| pelota (PEL1) [Arabidopsis thaliana] gi|7269619|emb|CAB81415.1| pelota (PEL1) [Arabidopsis thaliana] gi|18377690|gb|AAL66995.1| putative pelota (PEL1) protein [Arabidopsis thaliana] gi|20465995|gb|AAM20219.1| putative pelota protein (PEL1) [Arabidopsis thaliana] gi|332659974|gb|AEE85374.1| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116310865|emb|CAH67807.1| OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sativa Indica Group] gi|125550079|gb|EAY95901.1| hypothetical protein OsI_17764 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|38345200|emb|CAE02893.2| OSJNBa0015K02.10 [Oryza sativa Japonica Group] gi|38346417|emb|CAE54582.1| OSJNBa0011F23.23 [Oryza sativa Japonica Group] gi|222629704|gb|EEE61836.1| hypothetical protein OsJ_16488 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
TAIR|locus:2137732378 PEL1 "AT4G27650" [Arabidopsis 0.981 0.843 0.799 2.3e-133
TAIR|locus:2085465395 AT3G58390 "AT3G58390" [Arabido 0.84 0.691 0.744 2e-119
FB|FBgn0011207395 pelo "pelota" [Drosophila mela 0.981 0.807 0.489 8.2e-83
UNIPROTKB|Q9BRX2385 PELO "Protein pelota homolog" 0.981 0.828 0.460 2.1e-77
UNIPROTKB|H9L2N7361 PELO "Protein pelota homolog" 0.981 0.883 0.451 7.1e-77
UNIPROTKB|H9L2N8384 PELO "Protein pelota homolog" 0.981 0.830 0.451 7.1e-77
UNIPROTKB|Q58DV0385 PELO "Protein pelota homolog" 0.981 0.828 0.454 7.1e-77
RGD|1359591385 Pelo "pelota homolog (Drosophi 0.981 0.828 0.451 9e-77
UNIPROTKB|Q5ZK01385 PELO "Protein pelota homolog" 0.981 0.828 0.451 1.5e-76
ZFIN|ZDB-GENE-040426-1074385 pelo "pelota homolog (Drosophi 0.981 0.828 0.451 1.5e-76
TAIR|locus:2137732 PEL1 "AT4G27650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
 Identities = 255/319 (79%), Positives = 282/319 (88%)

Query:     1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAER 60
             MKI+RR+ V NGPGSVKM   DSDDLW+AYNLIA GDSVMAVT RKV R++  G RD+ER
Sbjct:     1 MKIVRRDFVRNGPGSVKMVAEDSDDLWYAYNLIAVGDSVMAVTFRKVQREIPGGGRDSER 60

Query:    61 XXXXXXXXXXXXDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSL 120
                         DYDK+GSVLRIRGKNILENEHVKIGAFHTLE+EL R FVLRK++WDS+
Sbjct:    61 VKLKLEVQVEEVDYDKDGSVLRIRGKNILENEHVKIGAFHTLELELKRPFVLRKEMWDSM 120

Query:   121 ALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYES 180
             ALDTL QA+DP ASADLAVVLMQEGLA I LVGRS+T +R+RIETSIPRKHGPAIAGYES
Sbjct:   121 ALDTLKQASDPAASADLAVVLMQEGLAQIFLVGRSVTSSRARIETSIPRKHGPAIAGYES 180

Query:   181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240
             AL KFFENVLQAF+KHVDF+VVRCAV+ASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI
Sbjct:   181 ALKKFFENVLQAFVKHVDFSVVRCAVVASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240

Query:   241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVE 300
             ILVHT+SGY+HSL EVL APNVMNMIKDTKAA+EV+AL DF NML+ +P RACYGPKHVE
Sbjct:   241 ILVHTNSGYRHSLGEVLHAPNVMNMIKDTKAAKEVKALNDFHNMLSTEPDRACYGPKHVE 300

Query:   301 VAHERMAVQTLLITDDLFR 319
             VA+ERMA+QTLLITD+LFR
Sbjct:   301 VANERMAIQTLLITDELFR 319
GO:0003747 "translation release factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006415 "translational termination" evidence=ISS
GO:0007126 "meiosis" evidence=ISS
TAIR|locus:2085465 AT3G58390 "AT3G58390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0011207 pelo "pelota" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BRX2 PELO "Protein pelota homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H9L2N7 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H9L2N8 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DV0 PELO "Protein pelota homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1359591 Pelo "pelota homolog (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZK01 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1074 pelo "pelota homolog (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XIP1PELO_RAT3, ., 1, ., -, ., -0.46390.98150.8285yesno
Q5RCE3PELO_PONAB3, ., 1, ., -, ., -0.47330.98150.8285yesno
Q80X73PELO_MOUSE3, ., 1, ., -, ., -0.45760.98150.8285yesno
Q9BRX2PELO_HUMAN3, ., 1, ., -, ., -0.47330.98150.8285yesno
Q5ZK01PELO_CHICK3, ., 1, ., -, ., -0.46080.98150.8285yesno
Q58DV0PELO_BOVIN3, ., 1, ., -, ., -0.46700.98150.8285yesno
Q7ZWC4PELO_DANRE3, ., 1, ., -, ., -0.46390.98150.8285yesno
P48612PELO_DROME3, ., 1, ., -, ., -0.50470.98150.8075yesno
P50444YNU6_CAEELNo assigned EC number0.41370.98150.8372yesno
Q9USL5DOM34_SCHPO3, ., 1, ., -, ., -0.38550.98150.8179yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025125001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (378 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00001176001
SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)
•   • • 0.836
GSVIVG00016616001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (107 aa)
    • • 0.693
GSVIVG00002292001
SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (797 aa)
      • 0.610
GSVIVG00004407001
SubName- Full=Chromosome undetermined scaffold_690, whole genome shotgun sequence; (249 aa)
  • •   0.475
GSVIVG00015193001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (249 aa)
  • •   0.467
GSVIVG00006153001
SubName- Full=Chromosome undetermined scaffold_165, whole genome shotgun sequence; (269 aa)
  • •   0.451
GSVIVG00010464001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (563 aa)
• ••    0.450
GSVIVG00024178001
RecName- Full=Proliferating cell nuclear antigen;; This protein is an auxiliary protein of DNA [...] (266 aa)
  •     0.414

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
COG1537352 COG1537, PelA, Predicted RNA-binding proteins [Gen 5e-66
TIGR00111351 TIGR00111, pelota, mRNA surveillance protein pelot 3e-46
pfam03463133 pfam03463, eRF1_1, eRF1 domain 1 7e-40
pfam03464129 pfam03464, eRF1_2, eRF1 domain 2 1e-35
pfam03465100 pfam03465, eRF1_3, eRF1 domain 3 9e-14
TIGR03676357 TIGR03676, aRF1/eRF1, peptide chain release factor 4e-11
PRK04011411 PRK04011, PRK04011, peptide chain release factor 1 2e-07
COG1503411 COG1503, eRF1, Peptide chain release factor 1 (eRF 5e-04
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information 
 Score =  211 bits (538), Expect = 5e-66
 Identities = 99/319 (31%), Positives = 169/319 (52%), Gaps = 19/319 (5%)

Query: 1   MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAER 60
           M+IL  +      G +K+ P   DDLW  YN+I  GD V A T R+        S+  ER
Sbjct: 1   MRILEEDKKR---GVIKLVPETLDDLWHLYNIIEKGDKVFAKTTRRDESSDVIRSKKGER 57

Query: 61  VKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSL 120
           + + L IKVE +++DK  + LRI+G  +   E V  G++HT+ + +     + K+ W+  
Sbjct: 58  IPMTLGIKVEKIEFDKFANRLRIKGPIVEGPEEVVKGSYHTINVTIGTEIEIEKEEWNKD 117

Query: 121 ALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYES 180
            L+ L +A + +   ++A+V++ EG A I +V     I   +I + IP K      G   
Sbjct: 118 QLERLKEAVEASKRPEVAIVVVDEGEAAIAIVRDYGIIILGKIRSGIPGKR----EGDIR 173

Query: 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240
           A  KFF+ + +A  ++ + +++   ++A PGF K+ F+  L      R+  P     + I
Sbjct: 174 AERKFFDEIAKALKEYANLDII---IVAGPGFAKEDFYDFL------RERYP---ELANI 221

Query: 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVE 300
           ++  TS+G +  + EVL    V  ++ +T+ A+E++ +++F   L  D  +  YG + VE
Sbjct: 222 VIEDTSTGGRAGINEVLKRGAVDKILSETRIAEEIELVEEFLERLAKDDDKVAYGLEEVE 281

Query: 301 VAHERMAVQTLLITDDLFR 319
            A E  AV+TLL+TD+L R
Sbjct: 282 KAAEYGAVETLLVTDELLR 300

Length = 352
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota Back     alignment and domain information
>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1 Back     alignment and domain information
>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2 Back     alignment and domain information
>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3 Back     alignment and domain information
>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional Back     alignment and domain information
>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
KOG2869379 consensus Meiotic cell division protein Pelota/DOM 100.0
TIGR00111351 pelota probable translation factor pelota. This mo 100.0
COG1537352 PelA Predicted RNA-binding proteins [General funct 100.0
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 100.0
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 100.0
PRK04011411 peptide chain release factor 1; Provisional 100.0
PF03463132 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do 100.0
COG1503411 eRF1 Peptide chain release factor 1 (eRF1) [Transl 100.0
PF03464133 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do 99.96
KOG0688 431 consensus Peptide chain release factor 1 (eRF1) [T 99.94
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 99.42
PF10116138 Host_attach: Protein required for attachment to ho 95.43
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1e-93  Score=656.22  Aligned_cols=324  Identities=56%  Similarity=0.902  Sum_probs=319.5

Q ss_pred             CeeeeeecccCCCceEEEeccCchhHHHHHHhhCCCCeEEEEeEEEEEecccCCCccceEEEEEEEEEEEEEeecCCCCe
Q 020502            1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV   80 (325)
Q Consensus         1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~~ef~~~~~~   80 (325)
                      ||++++++.++|.|.|+++||++|||||+||+|++||.|+|.|.|||+.+.++|+++++|+.++|+|+||+++||+.+..
T Consensus         1 MKli~K~~~rng~G~vtmvpEe~eDmw~~ynli~~gD~v~a~T~rkvq~e~a~G~~~s~rv~~~L~i~VesidfD~~~~~   80 (379)
T KOG2869|consen    1 MKLIRKDIERNGSGSVTMVPEESEDLWHLYNLIQVGDSVIASTIRKVQKEEATGKTKSSRVLLKLKIKVESIDFDTKACV   80 (379)
T ss_pred             CccchhhhhcCCCceEEECcCchhHHHHHHhhccCCceeEEEEEEEeeeccccCcccceEEEEEEEEEEEEeeccccccE
Confidence            99999999999999999999999999999999999999999999999999888988889999999999999999999999


Q ss_pred             EEEEEEEeecCcccccccEEEEEEccCcceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEE
Q 020502           81 LRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITR  160 (325)
Q Consensus        81 Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~  160 (325)
                      ||++|+++++|++|++|+|||++|+|+++|++.|++||++.+++|++||++..++++++|+++||.|+||+++.++|..+
T Consensus        81 L~~KGrti~eNe~Vk~GaYHTidlel~r~FtL~K~ewds~al~~l~~A~dp~~~ad~aaVvlqEGla~IcLvt~s~tilr  160 (379)
T KOG2869|consen   81 LRLKGRTIEENEYVKMGAYHTIDLELNRPFTLRKEEWDSMALKLLKEACDPAPSADVAAVVLQEGLAHICLVTKSSTILR  160 (379)
T ss_pred             EEEeeeeeeecccccccceeEEEeccCCceEEEhhhchHHHHHHHHHhhCcccccceeeeehhcCceeEEEechhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCccchhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCcE
Q 020502          161 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI  240 (325)
Q Consensus       161 ~~i~~~ip~K~~~~~s~~~~~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~  240 (325)
                      ++|+.+||+||+++.|++++.+++||++|.+++.++++|+.++|+|||||||+++.|++|+.+++.+..++.+..|++||
T Consensus       161 ~kIe~siPrKr~~~~s~~e~~l~kfye~V~qA~~k~v~fd~vk~~vvASpgF~~~~~~d~~~q~A~~~~~k~il~nk~kf  240 (379)
T KOG2869|consen  161 AKIEVSIPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVASPGFVKDQFMDYLFQQAVKLDLKLILENKSKF  240 (379)
T ss_pred             HhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHhcCcceEEEEEEcCCchhHHHHHHHHHHHHHHhchhhhhhcccce
Confidence            99999999998888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCccc
Q 020502          241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL  320 (325)
Q Consensus       241 ~v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~r~  320 (325)
                      ..+|+|+|+.++|+|+|.+|.|.+.|+|+|++.|+++||+|+.+++++|++||||++||.+|+|+|||+||||||++||+
T Consensus       241 ~~~h~ssg~~hslnevL~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~drA~yG~khV~~A~e~~AI~tLLitD~lfr~  320 (379)
T KOG2869|consen  241 PLVHASSGYKHSLNEVLKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPDRACYGPKHVEKANEYGAIETLLITDELFRS  320 (379)
T ss_pred             eEEecCCchHHHHHHHhcChHHHHHhhchhhHHHHHHHHHHHHHhccCccccccCHHHHHHHHhhcchhheehhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 020502          321 VCSK  324 (325)
Q Consensus       321 ~d~~  324 (325)
                      .|++
T Consensus       321 ~DV~  324 (379)
T KOG2869|consen  321 QDVA  324 (379)
T ss_pred             ccHH
Confidence            9985

>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
3mca_B390 Structure Of The Dom34-Hbs1 Complex And Implication 8e-67
2vgm_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 1e-32
2vgn_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 4e-32
3j15_A357 Model Of Ribosome-Bound Archaeal Pelota And Abce1 L 2e-20
2qi2_A347 Crystal Structure Of The Thermoplasma Acidophilum P 2e-13
1x52_A124 Solution Structures Of The C-Terminal Domain Of The 3e-13
3obw_A364 Crystal Structure Of Two Archaeal Pelotas Reveal In 3e-11
3oby_A352 Crystal Structure Of Archaeoglobus Fulgidus Pelota 3e-10
3agj_B358 Crystal Structure Of Archaeal Pelota And Gtp-bound 2e-07
>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  250 bits (638), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 117/319 (36%), Positives = 198/319 (62%)
Query: 1   MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAER 60
           MK++++N+ +NG G + M P + +D+W  YN++  GD + A TVR+V++  A+GS    R
Sbjct: 1   MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSR 60
Query: 61  XXXXXXXXXXXXDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSL 120
                       D+D + + L I+G+    +  VK+G++HTL++ELHR F L K+ WD+ 
Sbjct: 61  VVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAF 120
Query: 121 ALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYES 180
           ALD +  A +P+ +A++  V++ EGLA+I L+   MTI R RI+  IPRK     + Y+ 
Sbjct: 121 ALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQK 180
Query: 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240
            L+KF+++V Q+     DF+ ++  ++ASPGF     + ++   A +  L+ I+++K++ 
Sbjct: 181 GLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKF 240
Query: 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVE 300
           +++H+S+G+ HSL E+L  P V + + DTK  QE++ L  F++++  D  +A YGP HV 
Sbjct: 241 VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVL 300
Query: 301 VAHERMAVQTLLITDDLFR 319
            A E  A+  LLI+D LFR
Sbjct: 301 KAFELGAIGELLISDSLFR 319
>pdb|2VGM|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-Go Decay. Length = 386 Back     alignment and structure
>pdb|2VGN|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-go Decay. Length = 386 Back     alignment and structure
>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 357 Back     alignment and structure
>pdb|2QI2|A Chain A, Crystal Structure Of The Thermoplasma Acidophilum Pelota Protein Length = 347 Back     alignment and structure
>pdb|1X52|A Chain A, Solution Structures Of The C-Terminal Domain Of The Human Pelota Homolog (Cgi-17) Length = 124 Back     alignment and structure
>pdb|3OBW|A Chain A, Crystal Structure Of Two Archaeal Pelotas Reveal Inter-Domain Structural Plasticity Length = 364 Back     alignment and structure
>pdb|3OBY|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals Inter- Domain Structural Plasticity Length = 352 Back     alignment and structure
>pdb|3AGJ|B Chain B, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 358 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 1e-104
2vgn_A386 DOM34; translation termination factor, protein bio 3e-98
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 1e-79
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 4e-79
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 5e-77
3agj_B358 Protein pelota homolog; GTP binding, translation-h 9e-77
2qi2_A347 Pelota, cell division protein pelota related prote 2e-68
3agk_A373 Peptide chain release factor subunit 1; translatio 4e-32
3e20_C 441 Eukaryotic peptide chain release factor subunit 1; 1e-24
1dt9_A 437 ERF1, protein (eukaryotic peptide chain release fa 4e-20
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 6e-17
3ir9_A166 Peptide chain release factor subunit 1; structural 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
 Score =  310 bits (796), Expect = e-104
 Identities = 123/319 (38%), Positives = 206/319 (64%)

Query: 1   MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAER 60
           MK++++N+ +NG G + M P + +D+W  YN++  GD + A TVR+V++  A+GS    R
Sbjct: 1   MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSR 60

Query: 61  VKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSL 120
           V +KL I VE +D+D + + L I+G+    +  VK+G++HTL++ELHR F L K+ WD+ 
Sbjct: 61  VVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAF 120

Query: 121 ALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYES 180
           ALD +  A +P+ +A++  V++ EGLA+I L+   MTI R RI+  IPRK     + Y+ 
Sbjct: 121 ALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQK 180

Query: 181 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240
            L+KF+++V Q+     DF+ ++  ++ASPGF     + ++   A +  L+ I+++K++ 
Sbjct: 181 GLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKF 240

Query: 241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVE 300
           +++H+S+G+ HSL E+L  P V + + DTK  QE++ L  F++++  D  +A YGP HV 
Sbjct: 241 VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVL 300

Query: 301 VAHERMAVQTLLITDDLFR 319
            A E  A+  LLI+D LFR
Sbjct: 301 KAFELGAIGELLISDSLFR 319
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Length = 441 Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Length = 437 Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Length = 124 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Length = 166 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 100.0
2vgn_A386 DOM34; translation termination factor, protein bio 100.0
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 100.0
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 100.0
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 100.0
3agj_B358 Protein pelota homolog; GTP binding, translation-h 100.0
2qi2_A347 Pelota, cell division protein pelota related prote 100.0
3e20_C 441 Eukaryotic peptide chain release factor subunit 1; 100.0
1dt9_A 437 ERF1, protein (eukaryotic peptide chain release fa 100.0
3agk_A373 Peptide chain release factor subunit 1; translatio 100.0
3ir9_A166 Peptide chain release factor subunit 1; structural 99.76
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 99.68
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=3.9e-92  Score=684.15  Aligned_cols=323  Identities=38%  Similarity=0.693  Sum_probs=278.2

Q ss_pred             CeeeeeecccCCCceEEEeccCchhHHHHHHhhCCCCeEEEEeEEEEEecccCCCccceEEEEEEEEEEEEEeecCCCCe
Q 020502            1 MKILRRNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSV   80 (325)
Q Consensus         1 Mki~~~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~~ef~~~~~~   80 (325)
                      |||+++++.++++|.|+|+||++||||||||||++||.|+|+|+|+|++++++|+++++|++++|+|+||+++|||++++
T Consensus         1 Mkl~~~~~~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~~   80 (390)
T 3mca_B            1 MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAAQ   80 (390)
T ss_dssp             -------CBCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EECCCEEECTTSSC
T ss_pred             CccccccccCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEEEEEEEecCCCCE
Confidence            99999999999999999999999999999999999999999999999998888989999999999999999999999999


Q ss_pred             EEEEEEEeecCcccccccEEEEEEccCcceEEEEcccChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEE
Q 020502           81 LRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITR  160 (325)
Q Consensus        81 Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~A~i~ll~~~~~~~~  160 (325)
                      |||+|+|+.+|+++++|+|||++|+||+||+++|++||+|++++|++|++++.++++++|+||+|.|+||+++++++.++
T Consensus        81 Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~  160 (390)
T 3mca_B           81 LHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILR  160 (390)
T ss_dssp             EEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEE
T ss_pred             EEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCccchhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhccccccccccCcE
Q 020502          161 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI  240 (325)
Q Consensus       161 ~~i~~~ip~K~~~~~s~~~~~~~~F~~~v~~~l~~~~~~~~v~~iiIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~  240 (325)
                      +++++++||||++|.+++++++++||++|++++.+++++.++++||||||||+|++|++||.+++.+..++.|+.++++|
T Consensus       161 ~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~~k~  240 (390)
T 3mca_B          161 QRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKF  240 (390)
T ss_dssp             EEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHGGGE
T ss_pred             EEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhcCeE
Confidence            99999999999886558999999999999999999999999999999999999999999999999988888888888999


Q ss_pred             EEEEcCCCccchHHHHhcChhHHHhhhhhhHHHHHHHHHHHHHHhhcCCCeEEEcHHHHHHHHhccCccEEEEecCCccc
Q 020502          241 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL  320 (325)
Q Consensus       241 ~v~~~s~g~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~a~YG~~eV~~A~e~gAVetLLIsD~l~r~  320 (325)
                      +++|+|+||++|++|+|++|+++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|++||+
T Consensus       241 ~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~  320 (390)
T 3mca_B          241 VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRS  320 (390)
T ss_dssp             EEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCC
T ss_pred             EEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 020502          321 VCS  323 (325)
Q Consensus       321 ~d~  323 (325)
                      +|+
T Consensus       321 ~d~  323 (390)
T 3mca_B          321 SDI  323 (390)
T ss_dssp             SCH
T ss_pred             CCh
Confidence            874
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 325
d2vgna2142 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi 3e-56
d2vgna1135 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae 1e-44
d2qi2a1126 b.38.4.1 (A:1-126) Cell division protein pelota {T 2e-41
d2qi2a2117 c.55.4.2 (A:127-243) Cell division protein pelota 6e-18
d1x52a1111 d.79.3.2 (A:8-118) Cell division protein pelota {H 2e-16
d2vgna3104 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisi 8e-14
d1dt9a2146 d.79.3.2 (A:277-422) C-terminal domain of eukaryot 4e-13
d2qi2a395 d.79.3.2 (A:244-338) Cell division protein pelota 5e-12
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  177 bits (450), Expect = 3e-56
 Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 1/139 (0%)

Query: 133 ASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPA-IAGYESALNKFFENVLQ 191
             +D A V++QEG+AH+ LV  S TI + +IE S+P+K     +  ++    KF++ +  
Sbjct: 3   YKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYS 62

Query: 192 AFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKH 251
           A  K ++F+ ++  ++ SPGF        +   AE    + I++NK    + H S+GY  
Sbjct: 63  AMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCSTGYLQ 122

Query: 252 SLREVLDAPNVMNMIKDTK 270
            + EVL  P   + ++DTK
Sbjct: 123 GINEVLKNPLYASKLQDTK 141
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 135 Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 126 Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 117 Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 104 Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d2vgna1135 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 100.0
d2qi2a1126 Cell division protein pelota {Thermoplasma acidoph 100.0
d2vgna2142 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 100.0
d2qi2a2117 Cell division protein pelota {Thermoplasma acidoph 99.92
d1dt9a1134 Middle domain of eukaryotic peptide chain release 99.84
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 99.67
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.56
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 99.47
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 99.42
d1dt9a3138 N-terminal domain of eukaryotic peptide chain rele 97.67
d2hoea2169 N-acetylglucosamine kinase {Thermotoga maritima [T 80.44
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=3.5e-43  Score=290.31  Aligned_cols=128  Identities=19%  Similarity=0.393  Sum_probs=110.3

Q ss_pred             Ceeee--eecccCCCceEEEeccCchhHHHHHHhhCCCCeEEEEeEEEEEecccCCCccceEEEEEEEEEEEEEeecCCC
Q 020502            1 MKILR--RNLVENGPGSVKMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEG   78 (325)
Q Consensus         1 Mki~~--~~~~~~~~g~v~l~pE~~dDlw~Lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~~ef~~~~   78 (325)
                      |||++  ++..++++|.|+|+||++||||||||||++||.|++.|.|+++.++  ++.+++|++++|+|+|++++|||++
T Consensus         1 Mkli~~~k~~~~~~~g~v~l~pE~~dDLW~LynlI~~GD~V~~~t~R~~~~~~--~~~~~er~~~~L~I~Ve~~ef~~~~   78 (135)
T d2vgna1           1 MKVISLKKDSFNKGGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDE--AGKKKSTDLVKLKIKVISEDFDMKD   78 (135)
T ss_dssp             CEEEEEEECSSCTTCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEEEEEEEEETTT
T ss_pred             CeeEEeecccccCCceEEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEecCC--CCccEEEEEEEEEEEEEEEEeecCC
Confidence            99998  5556789999999999999999999999999999999999998753  3456789999999999999999999


Q ss_pred             CeEEEEEEEeec-----CcccccccEEEEEEccCcceEEEEcccChhhHHHHHHhcC
Q 020502           79 SVLRIRGKNILE-----NEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAAD  130 (325)
Q Consensus        79 ~~Lri~G~i~~~-----~e~v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~  130 (325)
                      ++|||+|+|+++     |++|++|+|||++|++|++|+|+|..||++++++|++||+
T Consensus        79 ~~LRi~G~iv~e~~~~~n~~v~~Gs~HTl~v~~~~~itI~K~~Wd~~~~~~L~eA~d  135 (135)
T d2vgna1          79 EYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACN  135 (135)
T ss_dssp             TEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTC
T ss_pred             CEEEEeeeEEecccccccccccccCcEEEEEcCCCeEEEEECCCCHHHHHHHHHhhC
Confidence            999999999987     6799999999999999999999999999999999999986
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure