Citrus Sinensis ID: 020608
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S9N9 | 344 | Cinnamoyl-CoA reductase 1 | no | no | 0.978 | 0.918 | 0.467 | 2e-71 | |
| Q9SAH9 | 332 | Cinnamoyl-CoA reductase 2 | no | no | 0.978 | 0.951 | 0.442 | 1e-67 | |
| Q500U8 | 326 | Tetraketide alpha-pyrone | no | no | 0.969 | 0.960 | 0.393 | 8e-60 | |
| P51110 | 337 | Dihydroflavonol-4-reducta | no | no | 0.984 | 0.943 | 0.386 | 2e-57 | |
| Q9CA28 | 321 | Tetraketide alpha-pyrone | no | no | 0.956 | 0.962 | 0.371 | 2e-56 | |
| Q9XES5 | 348 | Bifunctional dihydroflavo | N/A | no | 0.987 | 0.916 | 0.375 | 2e-55 | |
| Q84KP0 | 347 | Bifunctional dihydroflavo | N/A | no | 0.987 | 0.919 | 0.371 | 1e-54 | |
| P51104 | 360 | Dihydroflavonol-4-reducta | N/A | no | 0.978 | 0.877 | 0.367 | 2e-54 | |
| P51102 | 382 | Dihydroflavonol-4-reducta | no | no | 0.987 | 0.835 | 0.365 | 3e-51 | |
| P14720 | 380 | Dihydroflavonol-4-reducta | N/A | no | 0.965 | 0.821 | 0.373 | 5e-49 |
| >sp|Q9S9N9|CCR1_ARATH Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 269 bits (687), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/323 (46%), Positives = 205/323 (63%), Gaps = 7/323 (2%)
Query: 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLF 61
S + VCVTG G I SW+V +LLER YTV TV+N D + T HL+ LEG RL L
Sbjct: 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLILC 65
Query: 62 QIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK 121
+ DL DY+A+ AA+ GC GVFH ASP +DP+ Q++ PAV G V+ AA VK
Sbjct: 66 KADLQDYEALKAAIDGCDGVFHTASPV----TDDPE-QMVEPAVNGAKFVINAAAEAKVK 120
Query: 122 RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG 181
RVV+TSSI ++ P + V DE CW+D ++C+ + WY K +AE+AAWE AKEKG
Sbjct: 121 RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEKG 180
Query: 182 LDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241
+D+VV+NP V+GP + PT+NAS+ +L+ L G TY N V +DVALAH+LVYE
Sbjct: 181 VDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYE 240
Query: 242 NPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQ-PGLLRTKDGAKKLMDLGL 300
PSA GR+L E+ H G+ V +A+L+PEY +P KD + P K +K+ DLGL
Sbjct: 241 APSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGL 300
Query: 301 QFIPMDQIIKDSVESLKAKGFIS 323
+F Q + D+V+SL+ KG ++
Sbjct: 301 EFTSTKQSLYDTVKSLQEKGHLA 323
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Involved in the latter stages of lignin biosynthesis. Catalyzes one of the last steps of monolignol biosynthesis, the conversion of cinnamoyl-CoAs into their corresponding cinnamaldehydes. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 4EC: 4 |
| >sp|Q9SAH9|CCR2_ARATH Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/323 (44%), Positives = 201/323 (62%), Gaps = 7/323 (2%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M + ++VCVTG G I SW+V LLLER YTV TV+N +D + HL+ L+GA RL L
Sbjct: 1 MLVDGKLVCVTGAGGYIASWIVKLLLERGYTVRGTVRNPTDPKNN-HLRELQGAKERLTL 59
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
DLLDY+A+ A + GC GVFH ASP +DP+ +L PAV G V+ AA V
Sbjct: 60 HSADLLDYEALCATIDGCDGVFHTASPM----TDDPET-MLEPAVNGAKFVIDAAAKAKV 114
Query: 121 KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK 180
KRVV TSSI ++ +P + DE+CW+D ++C+ + WY K LAE++AWE AK K
Sbjct: 115 KRVVFTSSIGAVYMNPNRDTQAIVDENCWSDLDFCKNTKNWYCYGKMLAEQSAWETAKAK 174
Query: 181 GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVY 240
G+D+VV+NP V+GP + +NAS++ +L+ L G TY N V +DVAL H+LVY
Sbjct: 175 GVDLVVLNPVLVLGPPLQSAINASLVHILKYLTGSAKTYANLTQVYVDVRDVALGHVLVY 234
Query: 241 ENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIP-RLPKDTQPGLLRTKDGAKKLMDLG 299
E PSA GR++ E H G+ V +A+ +PEY +P + + P K +K+ DLG
Sbjct: 235 EAPSASGRYILAETALHRGEVVEILAKFFPEYPLPTKCSDEKNPRAKPYKFTTQKIKDLG 294
Query: 300 LQFIPMDQIIKDSVESLKAKGFI 322
L+F P+ Q + +SV+SL+ KG +
Sbjct: 295 LEFKPIKQSLYESVKSLQEKGHL 317
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Cinnamoyl-CoA reductase probably involved in the formation of phenolic compounds associated with the hypersensitive response. Seems not to be involved in lignin biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q500U8|TKPR1_ARATH Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 196/318 (61%), Gaps = 5/318 (1%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
VCVTG SG + SWLV LL Y V TV++ +E++ AHL LEGA RLRL + DL++
Sbjct: 8 VCVTGASGFLASWLVKRLLLEGYEVIGTVRDPGNEKKLAHLWKLEGAKERLRLVKADLME 67
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA-KALGVKRVVVT 126
+ A+ GC GVFH ASP ++ +P+ ++L PA++GT+NVL + K +KRVV+T
Sbjct: 68 EGSFDNAIMGCQGVFHTASP-VLKPTSNPEEEILRPAIEGTLNVLRSCRKNPSLKRVVLT 126
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVV 186
SS S++ + DE WT E C++ ++WY LSKTLAE+AAW+F++E G+D+V
Sbjct: 127 SSSSTVRIRDDFDPKIPLDESIWTSVELCKRFQVWYALSKTLAEQAAWKFSEENGIDLVT 186
Query: 187 VNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE-NFFMGSVHFKDVALAHILVYENPSA 245
V P ++GP +PP L ++ +L LL+G T+ ++ + MG VH DVA HI+V+E+ +A
Sbjct: 187 VLPSFLVGPSLPPDLCSTASDVLGLLKGETEKFQWHGQMGYVHIDDVARTHIVVFEHEAA 246
Query: 246 CGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFIPM 305
GR++C + + V+ ++ YP IP+ + + L K+ LGL+F +
Sbjct: 247 QGRYICSSNVISLEELVSFLSARYPSLPIPK--RFEKLNRLHYDFDTSKIQSLGLKFKSL 304
Query: 306 DQIIKDSVESLKAKGFIS 323
+++ D + SL +G++S
Sbjct: 305 EEMFDDCIASLVEQGYLS 322
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Involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Is essential for pollen wall development. Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P51110|DFRA_VITVI Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 193/329 (58%), Gaps = 11/329 (3%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M ++E VCVTG SG IGSWLV LLERR TV ATV++ ++ ++ HL L A+T L L
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERRLTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALG 119
++ DL D + A+ GCTGVFH+A+P + +DP+N+++ P ++G + ++ + A A
Sbjct: 61 WKADLADEGSFDEAIKGCTGVFHVATPMDFES-KDPENEVIKPTIEGMLGIMKSCAAAKT 119
Query: 120 VKRVVVTSSISSIT-PSPKWPADKVKDEDCWTDEEYCRQNEI--W-YPLSKTLAEKAAWE 175
V+R+V TSS ++ + P V DE CW+D E+CR ++ W Y +SKTLAE+AAW+
Sbjct: 120 VRRLVFTSSAGTVNIQEHQLP---VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWK 176
Query: 176 FAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-VHFKDVAL 234
+AKE +D + + P V+GP I ++ S++ L + G Y G VH D+
Sbjct: 177 YAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCN 236
Query: 235 AHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKK 294
AHI ++ENP A GR++C D + E YPEY+IP K L +KK
Sbjct: 237 AHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKK 296
Query: 295 LMDLGLQF-IPMDQIIKDSVESLKAKGFI 322
L DLG +F ++ + +V++ +AKG +
Sbjct: 297 LTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325
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Vitis vinifera (taxid: 29760) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|Q9CA28|TKPR2_ARATH Tetraketide alpha-pyrone reductase 2 OS=Arabidopsis thaliana GN=TKPR2 PE=2 SV=1 | Back alignment and function description |
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Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 179/320 (55%), Gaps = 11/320 (3%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
VTGG+G I S+++ LLE +TV TV+N DE + L +GA RL++ Q DL
Sbjct: 6 VTGGTGFIASYIIKSLLELGHTVRTTVRNPRDEEKVGFLWEFQGAKQRLKILQADLTVEG 65
Query: 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLT--AAKALGVKRVVVTS 127
+ AV G GVFH ASP +V + + Q L++P +KGT NV++ A +KR+V+TS
Sbjct: 66 SFDEAVNGVDGVFHTASPVLVPQDHNIQETLVDPIIKGTTNVMSSCAKSKATLKRIVLTS 125
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
S SSI +E W+D EYC++ +WY +KTL E+ AW A+EKGLD+VVV
Sbjct: 126 SCSSIRYRFDATEASPLNESHWSDPEYCKRFNLWYGYAKTLGEREAWRIAEEKGLDLVVV 185
Query: 188 NPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACG 247
NP V+GP++ P +++LM+L + +G Y NF +G VH DV AH+L E P A G
Sbjct: 186 NPSFVVGPLLGPKPTSTLLMILAIAKGLAGEYPNFTVGFVHIDDVVAAHVLAMEEPKASG 245
Query: 248 RHLCVEAISHYGDFVAKVAELYPEYDI----PRLPKDTQPGLLRTKDGAKKLMDLGL-QF 302
R +C +++H+ + + + YP Y D P + T +K+ +LG F
Sbjct: 246 RIICSSSVAHWSEIIELMRNKYPNYPFENKCSNKEGDNSPHSMDT----RKIHELGFGSF 301
Query: 303 IPMDQIIKDSVESLKAKGFI 322
+ ++ D + S + KG +
Sbjct: 302 KSLPEMFDDCIISFQKKGLL 321
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May be involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9XES5|DFRA_MALDO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 193/328 (58%), Gaps = 9/328 (2%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M E+E VCVTG SG IGSWLV LLE YTV ATV++ +++++ HL L A+T L L
Sbjct: 1 MGSESESVCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-AKALG 119
++ DL D + A+ GC+GVFH+A+P + +DP+N+++ P + G +++L A KA
Sbjct: 61 WKADLADEGSFDEAIQGCSGVFHVATPMDFES-KDPENEVIKPTINGLLDILKACQKAKT 119
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI--W-YPLSKTLAEKAAWEF 176
V+++V TSS ++ V DE W+D E+CR ++ W Y +SKTLAE+AAW++
Sbjct: 120 VRKLVFTSSAGTVNVEEH--QKPVYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKY 177
Query: 177 AKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-VHFKDVALA 235
AKE +D + + P V+GP + P++ S++ L + Y G VH D+ L+
Sbjct: 178 AKENNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLS 237
Query: 236 HILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL 295
HI +YE+P A GR++C + + V + E YPEY+IP K L +KKL
Sbjct: 238 HIYLYEHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLEPVHFSSKKL 297
Query: 296 MDLGLQF-IPMDQIIKDSVESLKAKGFI 322
++G +F ++ + +V++ +AKG I
Sbjct: 298 REIGFEFKYSLEDMFVGAVDACRAKGLI 325
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Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, dihydrokaempferol, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), naringenin to a low extent (10%), but not 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate. Malus domestica (taxid: 3750) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 4 |
| >sp|Q84KP0|DFRA_PYRCO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 192/328 (58%), Gaps = 9/328 (2%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M E+E VCVTG SG IGSWLV LLE YTV ATV++ +++++ HL L A+T L L
Sbjct: 1 MGSESESVCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-AKALG 119
++ DL D + A+ GC+GVFH+A+P + DP+N+++ P + G +++L A KA
Sbjct: 61 WKADLADEGSFDEAIQGCSGVFHVATPMDFES-RDPENEVIKPTINGLLDILKACQKAKT 119
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI--W-YPLSKTLAEKAAWEF 176
V+++V TSS ++ V DE W+D E+CR ++ W Y +SKTLAE+AAW++
Sbjct: 120 VRKLVFTSSAGTVNVEEH--QKPVYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKY 177
Query: 177 AKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-VHFKDVALA 235
AKE +D + + P V+GP + P++ S++ L + Y G VH D+ L+
Sbjct: 178 AKENNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLS 237
Query: 236 HILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL 295
HI +Y++P A GR++C + + V + E YPEY+IP K L +KKL
Sbjct: 238 HIYLYKHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLEPVHFSSKKL 297
Query: 296 MDLGLQF-IPMDQIIKDSVESLKAKGFI 322
++G +F ++ + +V++ +AKG I
Sbjct: 298 REIGFEFKYSLEDMFVGAVDACRAKGLI 325
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Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), dihydrokaempferol to a low extent (5%), but not naringenin, 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate. Pyrus communis (taxid: 23211) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 4 |
| >sp|P51104|DFRA_DIACA Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 186/324 (57%), Gaps = 8/324 (2%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
+ E VCVTG SG IGSWL+ LLER YTV ATV++ + ++ HL L A T L L++
Sbjct: 21 QGETVCVTGASGFIGSWLIMRLLERGYTVRATVRDPDNTKKVQHLLDLPNAKTNLTLWKA 80
Query: 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRV 123
DL + + AAV GCTGVFH+A+P + +DP+N+++ P + G +++L + ++RV
Sbjct: 81 DLHEEGSFDAAVDGCTGVFHIATPMDFES-KDPENEMIKPTINGMLDILKSCVKAKLRRV 139
Query: 124 VVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI--W-YPLSKTLAEKAAWEFAKEK 180
V TSS ++ V DE CW+ ++ R ++ W Y +SK LAE+AAW++A E
Sbjct: 140 VFTSSGGTVNVEAT--QKPVYDETCWSALDFIRSVKMTGWMYFVSKILAEQAAWKYAAEN 197
Query: 181 GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-VHFKDVALAHILV 239
L+ + + P V+GP I P++ S++ L + Y G VH D+ ++HI +
Sbjct: 198 NLEFISIIPPLVVGPFIMPSMPPSLITALSPITRTESHYTIIKQGQFVHLDDLCMSHIFL 257
Query: 240 YENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLG 299
YENP A GR++ + D + E YPEY++P KD + + + + +KKL DLG
Sbjct: 258 YENPKANGRYIASACAATIYDIAKMLREEYPEYNVPTKFKDYKEDMGQVQFSSKKLTDLG 317
Query: 300 LQF-IPMDQIIKDSVESLKAKGFI 322
+F + + +VES +AKG +
Sbjct: 318 FEFKYGLKDMYTAAVESCRAKGLL 341
|
Dianthus caryophyllus (taxid: 3570) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|P51102|DFRA_ARATH Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 183/328 (55%), Gaps = 9/328 (2%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M + E VCVTG SG IGSWLV LLER Y V ATV++ + ++ HL L A T L L
Sbjct: 1 MVSQKETVCVTGASGFIGSWLVMRLLERGYFVRATVRDPGNLKKVQHLLDLPNAKTLLTL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-AKALG 119
++ DL + + A+ GC GVFH+A+P + +DP+N+++ P V G + ++ A KA
Sbjct: 61 WKADLSEEGSYDDAINGCDGVFHVATPMDFES-KDPENEVIKPTVNGMLGIMKACVKAKT 119
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI--W-YPLSKTLAEKAAWEF 176
V+R V TSS ++ V DE+ W+D E+ ++ W Y +SKTLAEKAAW+F
Sbjct: 120 VRRFVFTSSAGTVNVEEH--QKNVYDENDWSDLEFIMSKKMTGWMYFVSKTLAEKAAWDF 177
Query: 177 AKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-VHFKDVALA 235
A+EKGLD + + P V+GP I ++ S++ L + Y G VH D+ A
Sbjct: 178 AEEKGLDFISIIPTLVVGPFITTSMPPSLITALSPITRNEAHYSIIRQGQYVHLDDLCNA 237
Query: 236 HILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL 295
HI +YE +A GR++C + + YPEY++P + L + +KKL
Sbjct: 238 HIFLYEQAAAKGRYICSSHDATILTISKFLRPKYPEYNVPSTFEGVDENLKSIEFSSKKL 297
Query: 296 MDLGLQF-IPMDQIIKDSVESLKAKGFI 322
D+G F ++++ +S+E+ + KGF+
Sbjct: 298 TDMGFNFKYSLEEMFIESIETCRQKGFL 325
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|P14720|DFRA_PETHY Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2 | Back alignment and function description |
|---|
Score = 195 bits (495), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 180/321 (56%), Gaps = 9/321 (2%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
VCVTG +G IGSWLV LLER Y VHATV++ ++++ HL L ADT L L++ DL
Sbjct: 18 VCVTGAAGFIGSWLVMRLLERGYNVHATVRDPENKKKVKHLLELPKADTNLTLWKADLTV 77
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALGVKRVVVT 126
+ A+ GC GVFH+A+P + +DP+N+++ P V+G ++++ + AKA VKR+V T
Sbjct: 78 EGSFDEAIQGCQGVFHVATPMDFES-KDPENEVIKPTVRGMLSIIESCAKANTVKRLVFT 136
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEE--YCRQNEIW-YPLSKTLAEKAAWEFAKEKGLD 183
SS ++ + D+ W+D + Y ++ W Y SK LAEKAA E AK+K +D
Sbjct: 137 SSAGTLDVQEQ--QKLFYDQTSWSDLDFIYAKKMTGWMYFASKILAEKAAMEEAKKKNID 194
Query: 184 VVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-VHFKDVALAHILVYEN 242
+ + P V+GP I PT S++ L L+ G Y G VH D+ AHI +YE+
Sbjct: 195 FISIIPPLVVGPFITPTFPPSLITALSLITGNEAHYCIIKQGQYVHLDDLCEAHIFLYEH 254
Query: 243 PSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF 302
P A GR +C + D V E +PEY +P K L +KKL D+G QF
Sbjct: 255 PKADGRFICSSHHAIIYDVAKMVREKWPEYYVPTEFKGIDKDLPVVSFSSKKLTDMGFQF 314
Query: 303 -IPMDQIIKDSVESLKAKGFI 322
++ + K ++++ + K +
Sbjct: 315 KYTLEDMYKGAIDTCRQKQLL 335
|
Petunia hybrida (taxid: 4102) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| 255571350 | 323 | cinnamoyl-CoA reductase, putative [Ricin | 0.996 | 0.996 | 0.829 | 1e-162 | |
| 228480464 | 329 | cinnamoyl-CoA reductase [Camellia oleife | 0.990 | 0.972 | 0.821 | 1e-158 | |
| 225434488 | 329 | PREDICTED: dihydroflavonol-4-reductase [ | 0.990 | 0.972 | 0.831 | 1e-157 | |
| 224103873 | 323 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.839 | 1e-156 | |
| 297793385 | 323 | cinnamoyl-CoA reductase family [Arabidop | 1.0 | 1.0 | 0.801 | 1e-156 | |
| 15237678 | 324 | Rossmann-fold NAD(P)-binding domain-cont | 1.0 | 0.996 | 0.783 | 1e-153 | |
| 357491057 | 320 | Dihydroflavonol 4-reductase-like protein | 0.987 | 0.996 | 0.789 | 1e-152 | |
| 356500898 | 320 | PREDICTED: dihydroflavonol-4-reductase-l | 0.984 | 0.993 | 0.789 | 1e-151 | |
| 356553106 | 320 | PREDICTED: dihydroflavonol-4-reductase-l | 0.984 | 0.993 | 0.779 | 1e-150 | |
| 47900734 | 324 | NmrA-like family protein [Solanum demiss | 0.990 | 0.987 | 0.793 | 1e-148 |
| >gi|255571350|ref|XP_002526624.1| cinnamoyl-CoA reductase, putative [Ricinus communis] gi|223534064|gb|EEF35783.1| cinnamoyl-CoA reductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/322 (82%), Positives = 299/322 (92%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
MSKE E VCVTGGSGCIGSWLV LLL+R YTVHATVKNL+DE+ET HL++LEGA++RLRL
Sbjct: 1 MSKEGETVCVTGGSGCIGSWLVHLLLQRGYTVHATVKNLNDEKETKHLESLEGAESRLRL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
+QIDLL YD+I AAV GC GVFHLASPCIVD+V+DPQ QLL+PA+KGT+NVLTAAK GV
Sbjct: 61 YQIDLLHYDSIVAAVAGCAGVFHLASPCIVDRVQDPQGQLLDPAIKGTLNVLTAAKEKGV 120
Query: 121 KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK 180
KRVVVTSSIS+ITP+P WPAD +K EDCWTD +YC QN +WYPLSKTLAEK AWEFAKEK
Sbjct: 121 KRVVVTSSISAITPNPNWPADVIKSEDCWTDVDYCNQNGLWYPLSKTLAEKVAWEFAKEK 180
Query: 181 GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVY 240
GLDVVVVNPGTVMGPVIPPT+NASMLML+RLLQGCT+TY++FFMGSVHFKDVA+AHI+VY
Sbjct: 181 GLDVVVVNPGTVMGPVIPPTINASMLMLVRLLQGCTETYQDFFMGSVHFKDVAMAHIMVY 240
Query: 241 ENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGL 300
ENPSA GRHLCVEAISHYGDFVAKVAELYPEY +PRLPKDTQPGLLR KDGAKKLM+LGL
Sbjct: 241 ENPSASGRHLCVEAISHYGDFVAKVAELYPEYKVPRLPKDTQPGLLRAKDGAKKLMELGL 300
Query: 301 QFIPMDQIIKDSVESLKAKGFI 322
+FIPM+QIIKD+VESLK+KG I
Sbjct: 301 EFIPMEQIIKDAVESLKSKGLI 322
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|228480464|gb|ACQ41893.1| cinnamoyl-CoA reductase [Camellia oleifera] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/320 (82%), Positives = 295/320 (92%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
+ +VVCVTGGSG IGSWLV LLL+R YTVHATVK+L DE+ET HL+ALEGA++RLRLFQI
Sbjct: 10 DGQVVCVTGGSGFIGSWLVRLLLDRGYTVHATVKDLKDEKETKHLEALEGAESRLRLFQI 69
Query: 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRV 123
DLLDYD+I AAVTG +GVFHLASPCIVD+V+DP+ +LL PA+KGT+NVLTAAK LGV+RV
Sbjct: 70 DLLDYDSIVAAVTGSSGVFHLASPCIVDQVKDPERELLEPAIKGTLNVLTAAKELGVRRV 129
Query: 124 VVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLD 183
VVTSS ++ITPSP WPADKVK+EDCWTD EYC+QN +WYPLSKTLAEKAAWEFAKEKGLD
Sbjct: 130 VVTSSNTAITPSPNWPADKVKNEDCWTDVEYCKQNGLWYPLSKTLAEKAAWEFAKEKGLD 189
Query: 184 VVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243
VVVVNPGTVMGP+IPP LNASMLMLLR LQGCT+ YENFFMG VH KDVALAHILVYEN
Sbjct: 190 VVVVNPGTVMGPIIPPALNASMLMLLRFLQGCTEIYENFFMGPVHVKDVALAHILVYENT 249
Query: 244 SACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFI 303
SA GRHLCVEAISHYGDF A VAELYPEY++PRLPKDTQPGLLRTKDG+KKLMDLG QFI
Sbjct: 250 SATGRHLCVEAISHYGDFTAMVAELYPEYNVPRLPKDTQPGLLRTKDGSKKLMDLGFQFI 309
Query: 304 PMDQIIKDSVESLKAKGFIS 323
PM+QIIK++VESLK+KG+IS
Sbjct: 310 PMEQIIKETVESLKSKGYIS 329
|
Source: Camellia oleifera Species: Camellia oleifera Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434488|ref|XP_002275195.1| PREDICTED: dihydroflavonol-4-reductase [Vitis vinifera] gi|297745846|emb|CBI15902.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 266/320 (83%), Positives = 288/320 (90%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
+EVVCVTGGSG IGSWLV LLL R YTVHATVKNL DERET HL+ALEGAD+RLRLFQI
Sbjct: 10 RSEVVCVTGGSGYIGSWLVCLLLRRGYTVHATVKNLKDERETKHLEALEGADSRLRLFQI 69
Query: 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRV 123
D+LDYD+I AAV G GVFHLASPCIVD+V+DP+ +LL+PA+KGT NVLTAAK LGV RV
Sbjct: 70 DVLDYDSIVAAVNGAAGVFHLASPCIVDQVQDPEKELLDPAIKGTNNVLTAAKELGVGRV 129
Query: 124 VVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLD 183
VVTSSIS+I PSP WPAD VK EDCWTD EYC+Q IWYPLSKTLAEKAAWEFAKEKGLD
Sbjct: 130 VVTSSISAIIPSPNWPADVVKGEDCWTDTEYCKQKGIWYPLSKTLAEKAAWEFAKEKGLD 189
Query: 184 VVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243
VVVVNPGTVMGP++PP LNASMLM+LRLLQGCTD YE+FFMGSVH KDVALAHILVYEN
Sbjct: 190 VVVVNPGTVMGPILPPGLNASMLMILRLLQGCTDIYEDFFMGSVHVKDVALAHILVYENK 249
Query: 244 SACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFI 303
SA GRHLCVEAISHYGDF AKVAELYPEY +PRLPKDTQPGLLR K +KKLMDLGLQFI
Sbjct: 250 SASGRHLCVEAISHYGDFAAKVAELYPEYKVPRLPKDTQPGLLRAKTASKKLMDLGLQFI 309
Query: 304 PMDQIIKDSVESLKAKGFIS 323
PM+QIIKDSVESL++KGFIS
Sbjct: 310 PMEQIIKDSVESLRSKGFIS 329
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103873|ref|XP_002313227.1| predicted protein [Populus trichocarpa] gi|222849635|gb|EEE87182.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/323 (83%), Positives = 300/323 (92%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
MSK+ EVVCVTGGSGCIGSWLV LLL+R YTVHAT KNL DE+ET HL++LEGADTRLRL
Sbjct: 1 MSKKGEVVCVTGGSGCIGSWLVRLLLDRGYTVHATAKNLKDEKETKHLESLEGADTRLRL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
+QIDLLDYD+I AA+ GC GVFHLASPCIVD+V DPQN+LL+PA+KGT+NVLTAAK GV
Sbjct: 61 YQIDLLDYDSIVAAINGCAGVFHLASPCIVDEVHDPQNELLDPAIKGTINVLTAAKENGV 120
Query: 121 KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK 180
+RVVVTSSISSITPSP WPAD +K+EDCWTD EYC+QN WYPLSKTLAEKAAWEF+KEK
Sbjct: 121 RRVVVTSSISSITPSPNWPADVIKNEDCWTDVEYCKQNGFWYPLSKTLAEKAAWEFSKEK 180
Query: 181 GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVY 240
GLDVVVVNPGTVMGPVI P LNASM+ML+RL QGCT+TY+NFFMGSVHFKDVALAHI+VY
Sbjct: 181 GLDVVVVNPGTVMGPVISPVLNASMVMLVRLFQGCTETYQNFFMGSVHFKDVALAHIIVY 240
Query: 241 ENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGL 300
ENPSA GRHLCVEAISHYGDFVAKVAELYPEY IPRLPKDTQPGLLR K+GAKKLMDLGL
Sbjct: 241 ENPSATGRHLCVEAISHYGDFVAKVAELYPEYKIPRLPKDTQPGLLRAKNGAKKLMDLGL 300
Query: 301 QFIPMDQIIKDSVESLKAKGFIS 323
+FIPM+QIIKD+VESLK++GFIS
Sbjct: 301 EFIPMEQIIKDAVESLKSEGFIS 323
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297793385|ref|XP_002864577.1| cinnamoyl-CoA reductase family [Arabidopsis lyrata subsp. lyrata] gi|297310412|gb|EFH40836.1| cinnamoyl-CoA reductase family [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 259/323 (80%), Positives = 294/323 (91%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
MS E EVVCVTG SGCIGSWLV LLL R Y+VHATVKNL DE+ET HL+ALEGA TRL L
Sbjct: 1 MSTEREVVCVTGASGCIGSWLVHLLLHRGYSVHATVKNLQDEKETKHLEALEGAATRLHL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
F++DLL YD ++AAV GC+GVFHLASPCIVD+V+DPQ QLL+PAVKGT+NVLTAAK GV
Sbjct: 61 FEMDLLQYDTVSAAVNGCSGVFHLASPCIVDEVQDPQKQLLDPAVKGTINVLTAAKEAGV 120
Query: 121 KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK 180
KRVVVTSSIS+ITPSP WPADK+K+E+CW D++YC+QN +WYPLSKTLAEKAAWEFA++K
Sbjct: 121 KRVVVTSSISAITPSPNWPADKIKNEECWADQDYCKQNGLWYPLSKTLAEKAAWEFAEQK 180
Query: 181 GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVY 240
GLDVVVVNPGTVMGPVIPP++NASMLMLLRLLQGCT+TYENFFMGSVHFKDVALAHILVY
Sbjct: 181 GLDVVVVNPGTVMGPVIPPSINASMLMLLRLLQGCTETYENFFMGSVHFKDVALAHILVY 240
Query: 241 ENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGL 300
ENPSA GRHLCVEAISHYGDFVAKVAELYP Y +P+LP++TQ GLLR K+ AKKLM+LGL
Sbjct: 241 ENPSAKGRHLCVEAISHYGDFVAKVAELYPNYSVPKLPRETQLGLLRAKNAAKKLMELGL 300
Query: 301 QFIPMDQIIKDSVESLKAKGFIS 323
+F M+ IIK+ VESLK+KGFIS
Sbjct: 301 EFSSMEDIIKEGVESLKSKGFIS 323
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237678|ref|NP_200657.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|10177026|dbj|BAB10264.1| dihydroflavonol 4-reductase-like [Arabidopsis thaliana] gi|21592589|gb|AAM64538.1| cinnamoyl-CoA reductase-like protein [Arabidopsis thaliana] gi|27754235|gb|AAO22571.1| putative cinnamoyl-CoA reductase [Arabidopsis thaliana] gi|332009676|gb|AED97059.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/323 (78%), Positives = 292/323 (90%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
++ E EVVCVTG SGCIGSWLV LL R Y+VHATVKNL DE+ET HL+ LEGA TRL L
Sbjct: 2 LTDEREVVCVTGASGCIGSWLVHQLLLRGYSVHATVKNLQDEKETKHLEGLEGAATRLHL 61
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
F++DLL YD ++AA+ GC+GVFHLASPCIVD+V+DPQ QLL+PAVKGT+NVLTAAK V
Sbjct: 62 FEMDLLQYDTVSAAINGCSGVFHLASPCIVDEVQDPQKQLLDPAVKGTINVLTAAKEASV 121
Query: 121 KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK 180
KRVVVTSSIS+ITPSP WPADK+K+E+CW E+YCRQN +WYPLSKTLAEKAAWEFA+EK
Sbjct: 122 KRVVVTSSISAITPSPNWPADKIKNEECWAAEDYCRQNGLWYPLSKTLAEKAAWEFAEEK 181
Query: 181 GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVY 240
GLDVVVVNPGTVMGPVIPP+LNASM MLLRLLQGCT+TYENFFMGSVHFKDVALAHILVY
Sbjct: 182 GLDVVVVNPGTVMGPVIPPSLNASMHMLLRLLQGCTETYENFFMGSVHFKDVALAHILVY 241
Query: 241 ENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGL 300
E+P + GRHLCVEAISHYGDFVAKVAELYP Y++P+LP++TQPGLLR K+ +KKL+DLGL
Sbjct: 242 EDPYSKGRHLCVEAISHYGDFVAKVAELYPNYNVPKLPRETQPGLLRDKNASKKLIDLGL 301
Query: 301 QFIPMDQIIKDSVESLKAKGFIS 323
+FI M++IIK+ VESLK+KGFIS
Sbjct: 302 KFISMEEIIKEGVESLKSKGFIS 324
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357491057|ref|XP_003615816.1| Dihydroflavonol 4-reductase-like protein [Medicago truncatula] gi|355517151|gb|AES98774.1| Dihydroflavonol 4-reductase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/319 (78%), Positives = 288/319 (90%)
Query: 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQID 64
++VVCVTGGSGCIGSWLV LLL R Y VHATV+NL+DE ET HL+ALEGA T LRLFQID
Sbjct: 2 SKVVCVTGGSGCIGSWLVHLLLHRGYIVHATVQNLNDENETKHLQALEGAQTNLRLFQID 61
Query: 65 LLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124
LL+YD + AAV GC GVFHLASPCIVDKV DPQ +LL+PA+KGT+NVLTAAK +GVKRVV
Sbjct: 62 LLNYDTVLAAVHGCDGVFHLASPCIVDKVLDPQKELLDPAIKGTLNVLTAAKEVGVKRVV 121
Query: 125 VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDV 184
VTSSIS+I PSP WP+D VK EDCWTD EYC+Q E+WYP+SKTLAEKAAW+F+KE GLDV
Sbjct: 122 VTSSISAIIPSPNWPSDVVKREDCWTDVEYCKQKELWYPMSKTLAEKAAWDFSKENGLDV 181
Query: 185 VVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS 244
VVVNPGTVMGPVIPP +NASMLML+RLLQGCT+TYE+FFMG VHFKDVALAHILVYEN
Sbjct: 182 VVVNPGTVMGPVIPPRINASMLMLVRLLQGCTETYEDFFMGLVHFKDVALAHILVYENKE 241
Query: 245 ACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFIP 304
A GRH+CVEAI+HYGDF AKVAELYPEY++P++ +DTQPGLLR KDG+KKLMDLGL+FIP
Sbjct: 242 ATGRHVCVEAITHYGDFAAKVAELYPEYNVPKIQRDTQPGLLRAKDGSKKLMDLGLEFIP 301
Query: 305 MDQIIKDSVESLKAKGFIS 323
M+QII+D+VESLK+KG IS
Sbjct: 302 MEQIIRDAVESLKSKGLIS 320
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500898|ref|XP_003519267.1| PREDICTED: dihydroflavonol-4-reductase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/318 (78%), Positives = 288/318 (90%)
Query: 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL 65
+VVCVTGGSGCIGSWLV LLL+R YTVHATV+NL+DE ET HL++L+GA TRLRLFQ+DL
Sbjct: 3 KVVCVTGGSGCIGSWLVHLLLDRGYTVHATVQNLNDEAETKHLQSLDGASTRLRLFQMDL 62
Query: 66 LDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
L +D + AAV GC GVFHLASPCIVD+V DPQ +LL+PA+KGT+NVLTAAK GV+RVV+
Sbjct: 63 LRHDTVLAAVRGCAGVFHLASPCIVDQVHDPQKELLDPAIKGTMNVLTAAKEAGVRRVVL 122
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVV 185
TSSIS++TPSP WP D K E+CWTD EYC+Q +WYPLSKTLAEKAAW+FAKE LDVV
Sbjct: 123 TSSISAVTPSPNWPGDVAKTEECWTDVEYCKQKGLWYPLSKTLAEKAAWDFAKENDLDVV 182
Query: 186 VVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSA 245
VVNPGTVMGPVIPP LNASM+ML+RLLQGC +TYE+FFMGSVHFKDVALAHILVYEN SA
Sbjct: 183 VVNPGTVMGPVIPPRLNASMVMLVRLLQGCAETYEDFFMGSVHFKDVALAHILVYENKSA 242
Query: 246 CGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFIPM 305
GRHLCVEAISHYGDFVAKVAELYPEY++P++ +DTQPGLLRTKDGAKKLMDLGLQFIPM
Sbjct: 243 AGRHLCVEAISHYGDFVAKVAELYPEYNVPKMQRDTQPGLLRTKDGAKKLMDLGLQFIPM 302
Query: 306 DQIIKDSVESLKAKGFIS 323
++IIKD+VE LK+KGF+S
Sbjct: 303 EKIIKDAVEDLKSKGFLS 320
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553106|ref|XP_003544899.1| PREDICTED: dihydroflavonol-4-reductase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/318 (77%), Positives = 287/318 (90%)
Query: 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL 65
+VVCVTGGSGCIGSWLV LLL+R YTVHATV+NL+DE ET HL++L+GA TRLRLFQ+DL
Sbjct: 3 KVVCVTGGSGCIGSWLVHLLLDRGYTVHATVQNLNDEAETKHLQSLDGASTRLRLFQMDL 62
Query: 66 LDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
L +D + AAV GC GVFHLASPCIVD+V DPQ +LL+PA+KGT+NVLTAAK GV+RVV+
Sbjct: 63 LRHDTVLAAVRGCAGVFHLASPCIVDQVHDPQKELLDPAIKGTMNVLTAAKEAGVRRVVL 122
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVV 185
TSSIS++TPSP WP D K E+CWTD EY +Q +WYPLSKTLAEKAAW+FAKE LDVV
Sbjct: 123 TSSISAVTPSPNWPGDVAKTEECWTDVEYSKQKGLWYPLSKTLAEKAAWDFAKENDLDVV 182
Query: 186 VVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSA 245
VVNPGTVMGPVIPP LNASM+ML+RLLQGC +TYE+FFMGSVHFKDVAL+H+LVYEN SA
Sbjct: 183 VVNPGTVMGPVIPPRLNASMVMLVRLLQGCAETYEDFFMGSVHFKDVALSHVLVYENKSA 242
Query: 246 CGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFIPM 305
GRHLCVEAISHYGDFVAKVAELYPEY++P++ +DTQPGLLRTKDGAKKLMDLGLQFIPM
Sbjct: 243 AGRHLCVEAISHYGDFVAKVAELYPEYNVPKMQRDTQPGLLRTKDGAKKLMDLGLQFIPM 302
Query: 306 DQIIKDSVESLKAKGFIS 323
++IIKD+VE LK+KGF+S
Sbjct: 303 EKIIKDAVEDLKSKGFLS 320
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|47900734|gb|AAT39306.1| NmrA-like family protein [Solanum demissum] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/320 (79%), Positives = 293/320 (91%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
E EVVCVTGGSG IGSWLVS LLER YTVHATVK+L+DE+ET HL AL+GA++RLRL+QI
Sbjct: 5 EGEVVCVTGGSGFIGSWLVSSLLERGYTVHATVKDLNDEKETKHLLALDGAESRLRLYQI 64
Query: 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRV 123
DLLDYD+I +A+TG GVFHLASPCIVD+V+DP+N LL+PA+KGT NVLTA+K LGVKRV
Sbjct: 65 DLLDYDSIVSAITGAVGVFHLASPCIVDEVKDPENDLLSPAIKGTSNVLTASKELGVKRV 124
Query: 124 VVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLD 183
VVTSS+SSITP+P WPAD++ +EDCWTD EYC+QN +WYPLSKTLAEK AW+FAKEK LD
Sbjct: 125 VVTSSVSSITPNPNWPADRIMNEDCWTDIEYCKQNGVWYPLSKTLAEKDAWKFAKEKDLD 184
Query: 184 VVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243
+VVVNPGTVMGP+IPP+LNASM M+LRLLQGCTDTY++FFMG VH KDVALAHILVYEN
Sbjct: 185 IVVVNPGTVMGPIIPPSLNASMQMILRLLQGCTDTYQDFFMGLVHVKDVALAHILVYENK 244
Query: 244 SACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFI 303
SA GRH+CVEAI+HYGDF AKVAELYPEY++PRLPKDTQPGLLR KDGAKKLMDLGL+FI
Sbjct: 245 SAKGRHMCVEAITHYGDFAAKVAELYPEYNVPRLPKDTQPGLLRAKDGAKKLMDLGLEFI 304
Query: 304 PMDQIIKDSVESLKAKGFIS 323
M+QII+D+VESLK KG+IS
Sbjct: 305 EMEQIIRDAVESLKIKGYIS 324
|
Source: Solanum demissum Species: Solanum demissum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| TAIR|locus:2171258 | 324 | AT5G58490 [Arabidopsis thalian | 1.0 | 0.996 | 0.665 | 1.6e-116 | |
| TAIR|locus:2056171 | 318 | AT2G02400 [Arabidopsis thalian | 0.972 | 0.987 | 0.396 | 2.1e-68 | |
| TAIR|locus:2033904 | 325 | AT1G51410 [Arabidopsis thalian | 0.984 | 0.978 | 0.416 | 1.3e-61 | |
| TAIR|locus:2150315 | 326 | AT5G19440 [Arabidopsis thalian | 0.984 | 0.975 | 0.422 | 8.1e-60 | |
| TAIR|locus:2200427 | 344 | CCR1 "cinnamoyl coa reductase | 0.978 | 0.918 | 0.390 | 9.9e-55 | |
| TAIR|locus:2025832 | 332 | CCR2 "cinnamoyl coa reductase" | 0.978 | 0.951 | 0.371 | 2.7e-52 | |
| TAIR|locus:2012250 | 369 | AT1G09480 [Arabidopsis thalian | 0.981 | 0.859 | 0.376 | 5.6e-52 | |
| TAIR|locus:2033394 | 319 | AT1G66800 [Arabidopsis thalian | 0.965 | 0.978 | 0.400 | 7.2e-52 | |
| TAIR|locus:2012315 | 322 | AT1G09510 [Arabidopsis thalian | 0.978 | 0.981 | 0.378 | 1.2e-51 | |
| TAIR|locus:2012265 | 322 | AT1G09490 [Arabidopsis thalian | 0.978 | 0.981 | 0.363 | 1.5e-49 |
| TAIR|locus:2171258 AT5G58490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
Identities = 215/323 (66%), Positives = 249/323 (77%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
++ E EVVCVTG SGCIGSWLV LL R Y+VHATVKNL DE+ET HL+ LEGA TRL L
Sbjct: 2 LTDEREVVCVTGASGCIGSWLVHQLLLRGYSVHATVKNLQDEKETKHLEGLEGAATRLHL 61
Query: 61 FQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
F+ + GC+GVFHLASPCIVD+V+DPQ QLL+PAVKGT+NVLTAAK V
Sbjct: 62 FEMDLLQYDTVSAAINGCSGVFHLASPCIVDEVQDPQKQLLDPAVKGTINVLTAAKEASV 121
Query: 121 KRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLXXXXXXXXXXXX 180
KR WPADK+K+E+CW E+YCRQN +WYPLSKTL
Sbjct: 122 KRVVVTSSISAITPSPNWPADKIKNEECWAAEDYCRQNGLWYPLSKTLAEKAAWEFAEEK 181
Query: 181 GLDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHILVY 240
GLDVVVVNPGTVMGPVIPP+LNAS QGCT+TYENFFMGSVHFKDVALAHILVY
Sbjct: 182 GLDVVVVNPGTVMGPVIPPSLNASMHMLLRLLQGCTETYENFFMGSVHFKDVALAHILVY 241
Query: 241 ENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGL 300
E+P + GRHLCVEAISHYGDFVAKVAELYP Y++P+LP++TQPGLLR K+ +KKL+DLGL
Sbjct: 242 EDPYSKGRHLCVEAISHYGDFVAKVAELYPNYNVPKLPRETQPGLLRDKNASKKLIDLGL 301
Query: 301 QFIPMDQIIKDSVESLKAKGFIS 323
+FI M++IIK+ VESLK+KGFIS
Sbjct: 302 KFISMEEIIKEGVESLKSKGFIS 324
|
|
| TAIR|locus:2056171 AT2G02400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 126/318 (39%), Positives = 190/318 (59%)
Query: 6 EVVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERETAHLKALEGADTRLRLFQXX 64
E VCVTG +G IGSW++ L+E+ YT +HA++ SD HL L G+D+++++F+
Sbjct: 4 ETVCVTGANGFIGSWIIRTLIEKGYTKIHASIYPGSDP---THLLQLPGSDSKIKIFEAD 60
Query: 65 XXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRXX 124
+ GC GVFH+ASPC +D DP+ +L+ PAVKGT+NVL AAK V+R
Sbjct: 61 LLDSDAISRAIDGCAGVFHVASPCTLDPPVDPEKELVEPAVKGTINVLEAAKRFNVRRVV 120
Query: 125 XXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLXXXXXXXXXXXXGLDV 184
WP DE W+D ++C+ + WYP+SKTL G ++
Sbjct: 121 ITSSISALVPNPNWPEKVPVDESSWSDLDFCKSRQKWYPISKTLAEKAAWEFSEKHGTNI 180
Query: 185 VVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHILVYENPS 244
V ++P T +GP++ P LNAS QG T+T E+ ++G VH KDVA H++++E P
Sbjct: 181 VTIHPSTCLGPLLQPNLNASCAVLLQLLQGSTETQEHHWLGVVHVKDVAKGHVMLFETPD 240
Query: 245 ACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFIP 304
A GR LC I + +F A V++L+PE+ + + K+TQPGL D AK+L++LGL F
Sbjct: 241 ASGRFLCTNGIYQFSEFAALVSKLFPEFAVHKFDKETQPGLTSCNDAAKRLIELGLVFTA 300
Query: 305 MDQIIKDSVESLKAKGFI 322
++ +K++V+SL+ KGF+
Sbjct: 301 VEDAVKETVQSLRDKGFL 318
|
|
| TAIR|locus:2033904 AT1G51410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 135/324 (41%), Positives = 190/324 (58%)
Query: 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLF 61
S+E + VCVTG SG I SW+V LLL R YTV A+V++ +D R+T HL ALEGA+ RL+LF
Sbjct: 3 SEEEKTVCVTGASGYIASWIVKLLLLRGYTVKASVRDPNDPRKTEHLLALEGAEERLKLF 62
Query: 62 QXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA-KALGV 120
+ + GC GVFH ASP D V+DPQ +LL+PAVKGT+NVL++ K V
Sbjct: 63 KANLLEEGSFDSAIDGCEGVFHTASPFYHD-VKDPQAELLDPAVKGTINVLSSCLKTSSV 121
Query: 121 KRXXXXXXXXXXXXXX--KWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLXXXXXXXXXX 178
KR + P + + DE + D +YCR +++WY LSKTL
Sbjct: 122 KRVVLTSSIAAVAFNGMPRTP-ETIVDETWFADPDYCRASKLWYVLSKTLAENAAWKFAK 180
Query: 179 XXGLDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHIL 238
L +V +NP V+GP++ PTLN S +G T+ N G V+ KDVA AHI
Sbjct: 181 ENNLQLVSINPAMVIGPLLQPTLNTSAAAVLSLIKGA-QTFPNATFGWVNVKDVANAHIQ 239
Query: 239 VYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDL 298
+ENP A GR+ VE ++HY + V + +LYP++ +P D + + K +K L
Sbjct: 240 AFENPDADGRYCLVERVAHYSEVVNILHDLYPDFQLPEKCADEKIYIPTYKVSKEKAESL 299
Query: 299 GLQFIPMDQIIKDSVESLKAKGFI 322
G++F+P++ IK++VESL+ KGFI
Sbjct: 300 GVEFVPLEVSIKETVESLRDKGFI 323
|
|
| TAIR|locus:2150315 AT5G19440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 136/322 (42%), Positives = 178/322 (55%)
Query: 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLF 61
S E +VVCVTG SG I SWLV LL R YTV A+V++ SD ++T HL +LEGA RL LF
Sbjct: 4 SGEGKVVCVTGASGYIASWLVKFLLSRGYTVKASVRDPSDPKKTQHLVSLEGAKERLHLF 63
Query: 62 QXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-AKALGV 120
+ + GC GVFH ASP D +DPQ +L++PAVKGT+NVL + AKA V
Sbjct: 64 KADLLEQGSFDSAIDGCHGVFHTASPFFND-AKDPQAELIDPAVKGTLNVLNSCAKASSV 122
Query: 121 KRXXXXXXXXXXXXXXKWPADKVKDEDCW-TDEEYCRQNEIWYPLSKTLXXXXXXXXXXX 179
KR K V ++ W +D E C +++WY LSKTL
Sbjct: 123 KRVVVTSSMAAVGYNGKPRTPDVTVDETWFSDPELCEASKMWYVLSKTLAEDAAWKLAKE 182
Query: 180 XGLDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHILV 239
GLD+V +NP V+GP++ PTLN S G T+ N G V+ KDVA AHI
Sbjct: 183 KGLDIVTINPAMVIGPLLQPTLNTSAAAILNLINGAK-TFPNLSFGWVNVKDVANAHIQA 241
Query: 240 YENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLG 299
+E PSA GR+ VE + H+ + V + ELYP +P D P + + K LG
Sbjct: 242 FEVPSANGRYCLVERVVHHSEIVNILRELYPNLPLPERCVDENPYVPTYQVSKDKTRSLG 301
Query: 300 LQFIPMDQIIKDSVESLKAKGF 321
+ +IP+ IK++VESLK KGF
Sbjct: 302 IDYIPLKVSIKETVESLKEKGF 323
|
|
| TAIR|locus:2200427 CCR1 "cinnamoyl coa reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 126/323 (39%), Positives = 171/323 (52%)
Query: 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLF 61
S + VCVTG G I SW+V +LLER YTV TV+N D + T HL+ LEG RL L
Sbjct: 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLILC 65
Query: 62 QXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK 121
+ + GC GVFH ASP + D DP+ Q++ PAV G V+ AA VK
Sbjct: 66 KADLQDYEALKAAIDGCDGVFHTASP-VTD---DPE-QMVEPAVNGAKFVINAAAEAKVK 120
Query: 122 RXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLXXXXXXXXXXXXG 181
R + V DE CW+D ++C+ + WY K + G
Sbjct: 121 RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEKG 180
Query: 182 LDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHILVYE 241
+D+VV+NP V+GP + PT+NAS G TY N V +DVALAH+LVYE
Sbjct: 181 VDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYE 240
Query: 242 NPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQ-PGLLRTKDGAKKLMDLGL 300
PSA GR+L E+ H G+ V +A+L+PEY +P KD + P K +K+ DLGL
Sbjct: 241 APSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGL 300
Query: 301 QFIPMDQIIKDSVESLKAKGFIS 323
+F Q + D+V+SL+ KG ++
Sbjct: 301 EFTSTKQSLYDTVKSLQEKGHLA 323
|
|
| TAIR|locus:2025832 CCR2 "cinnamoyl coa reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 120/323 (37%), Positives = 166/323 (51%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M + ++VCVTG G I SW+V LLLER YTV TV+N +D + HL+ L+GA RL L
Sbjct: 1 MLVDGKLVCVTGAGGYIASWIVKLLLERGYTVRGTVRNPTDPKNN-HLRELQGAKERLTL 59
Query: 61 FQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
+ GC GVFH ASP +DP+ +L PAV G V+ AA V
Sbjct: 60 HSADLLDYEALCATIDGCDGVFHTASPM----TDDPET-MLEPAVNGAKFVIDAAAKAKV 114
Query: 121 KRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLXXXXXXXXXXXX 180
KR + DE+CW+D ++C+ + WY K L
Sbjct: 115 KRVVFTSSIGAVYMNPNRDTQAIVDENCWSDLDFCKNTKNWYCYGKMLAEQSAWETAKAK 174
Query: 181 GLDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHILVY 240
G+D+VV+NP V+GP + +NAS G TY N V +DVAL H+LVY
Sbjct: 175 GVDLVVLNPVLVLGPPLQSAINASLVHILKYLTGSAKTYANLTQVYVDVRDVALGHVLVY 234
Query: 241 ENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQ-PGLLRTKDGAKKLMDLG 299
E PSA GR++ E H G+ V +A+ +PEY +P D + P K +K+ DLG
Sbjct: 235 EAPSASGRYILAETALHRGEVVEILAKFFPEYPLPTKCSDEKNPRAKPYKFTTQKIKDLG 294
Query: 300 LQFIPMDQIIKDSVESLKAKGFI 322
L+F P+ Q + +SV+SL+ KG +
Sbjct: 295 LEFKPIKQSLYESVKSLQEKGHL 317
|
|
| TAIR|locus:2012250 AT1G09480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 121/321 (37%), Positives = 174/321 (54%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M+ ++VCVTG SG I SW+V LLL R YTV ATV++L+D ++T HL AL+GA RL+L
Sbjct: 48 MNGGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKL 107
Query: 61 FQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
F+ + GC VFH ASP + V+DPQ +L++PA+KGT+NVL K
Sbjct: 108 FKADLLEESSFEQAIEGCDAVFHTASP-VFFTVKDPQTELIDPALKGTMNVLNTCKETPS 166
Query: 121 KRXXXXXXXXXXXXXXKWP--ADKVKDEDCWTDEEYCRQNEIWYPLSKTLXXXXXXXXXX 178
R + P A V DE ++D CR+ + WYPLSK L
Sbjct: 167 VRRVILTSSTAAVLFRQPPVEASDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAK 226
Query: 179 XXGLDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHIL 238
G+D+VV+NPG + GP++ PTLN S G + + + F V +DVALAHI
Sbjct: 227 DNGIDMVVLNPGFIFGPLLQPTLNFSVELIVDFING-KNPFNSRFYRFVDVRDVALAHIK 285
Query: 239 VYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDL 298
E PSA GR++ I D + + EL P+ I +++ + K +K+ +L
Sbjct: 286 ALETPSANGRYIIDGPIMSVSDIIDILRELLPDLCIADTNEESVMNEMLCKVCVEKVKNL 345
Query: 299 GLQFIPMDQIIKDSVESLKAK 319
G++F PM ++D++ SLK K
Sbjct: 346 GVEFTPMKSSLRDTIVSLKEK 366
|
|
| TAIR|locus:2033394 AT1G66800 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 129/322 (40%), Positives = 174/322 (54%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M+ E +VVCVTG SG I SW+V LLL R YTV ATV+N D ++T HL LEGA RL+L
Sbjct: 1 MNGEGKVVCVTGASGYIASWIVKLLLLRGYTVRATVRNPMDTKKTNHLLTLEGASERLKL 60
Query: 61 FQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALG 119
F+ + GC GVFH ASP + V DPQ ++++PAV GT+NVL T AK
Sbjct: 61 FKSDLLEEGSFDQAIEGCDGVFHTASPVSLT-VTDPQTEMIDPAVNGTLNVLRTCAKVSS 119
Query: 120 VKRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLXXXXXXXXXXX 179
VKR P D V DE +TD + WY SKTL
Sbjct: 120 VKRVIVTSSTAATLSIN--PNDVV-DETVFTDLSVYLAMKAWYGYSKTLAEETAWRFAKE 176
Query: 180 XGLDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHILV 239
G+D+VV+NPG V+GPV+ PTLN S G + +F+ + +DV+LAHI
Sbjct: 177 NGIDLVVMNPGNVIGPVLQPTLNYSVEVIVDLINGKNPS-NSFYYRFMDVRDVSLAHIKA 235
Query: 240 YENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQP--GLLRTKDGAKKLMD 297
+E PSA GR++ + D + EL+P D+ R+ KD + G + K KL
Sbjct: 236 FEVPSASGRYILADPDVTMKDIQKLLHELFP--DLCRVDKDNENEVGEMAYKVCVDKLKS 293
Query: 298 LGLQFIPMDQIIKDSVESLKAK 319
LG++F P+ + +KD+V SLK +
Sbjct: 294 LGIEFTPIKESLKDTVVSLKER 315
|
|
| TAIR|locus:2012315 AT1G09510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 122/322 (37%), Positives = 177/322 (54%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M+ ++VCVTG SG + SW+V LLL R YTV ATV++ SDE++T HL AL+GA +L+L
Sbjct: 1 MADGGKMVCVTGASGYVASWIVKLLLLRGYTVRATVRDPSDEKKTEHLLALDGAKEKLKL 60
Query: 61 FQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALG 119
F+ + GC VFH ASP + V DPQ +L++PAVKGT+NVL T AK
Sbjct: 61 FKADLLEEGSFEQAIEGCDAVFHTASPVSLT-VTDPQIELIDPAVKGTLNVLKTCAKVSS 119
Query: 120 VKRXXXXXXXXXXXXXXKW--PADKVKDEDCWTDEEYCRQNEIWYPLSKTLXXXXXXXXX 177
VKR P D V DE C++D +C + ++WY LSKTL
Sbjct: 120 VKRVIVTSSMAAVLFREPTLGPNDLV-DESCFSDPNFCTEKKLWYALSKTLAEDEAWRFA 178
Query: 178 XXXGLDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHI 237
GLD+VV+NPG V+GP++ P+L S G D + N V +DVALAHI
Sbjct: 179 KEKGLDLVVINPGLVLGPLLKPSLTFSVNVIVELITG-KDNFINKDFRLVDVRDVALAHI 237
Query: 238 LVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMD 297
+E PSA GR++ + D + E +P+ ++ + ++ + K +K+
Sbjct: 238 KAFETPSANGRYIIEGPVVTINDIEKILREFFPDLNLGNKGEASEIIPVIYKLCVEKVKS 297
Query: 298 LGLQFIPMDQIIKDSVESLKAK 319
LG++F P + ++D++ SLK K
Sbjct: 298 LGIEFTPTEATLRDTILSLKEK 319
|
|
| TAIR|locus:2012265 AT1G09490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 117/322 (36%), Positives = 174/322 (54%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M+ +VVCVTG SG I SW+V LLL R YTV+ATV++ D+++T HL AL+GA RL+L
Sbjct: 1 MNCGGKVVCVTGASGYIASWIVKLLLLRGYTVNATVRDPKDKKKTEHLLALDGAKERLKL 60
Query: 61 FQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG- 119
F+ + GC VFH ASP ++ V DPQ +L++PA+KGT+NVL K +
Sbjct: 61 FKADLLEESSFDQAIDGCDAVFHTASP-VLFTVTDPQTELIDPALKGTINVLNTCKQVSS 119
Query: 120 VKRXXXXXXXXXXXXXXK--WPADKVKDEDCWTDEEYCRQNEIWYPLSKTLXXXXXXXXX 177
VKR P D V DE ++D CR+ + WY LSK L
Sbjct: 120 VKRVILTSSTAAVLSRQPPIGPNDLV-DETFFSDPSLCRETKNWYSLSKILAENAAWQFA 178
Query: 178 XXXGLDVVVVNPGTVMGPVIPPTLNASXXXXXXXXQGCTDTYENFFMGSVHFKDVALAHI 237
G+D+VV+NPG + GP++ PTLN S G + ++ S +DVAL HI
Sbjct: 179 KDNGIDMVVLNPGFICGPLLQPTLNMSVELIVDFINGKNPFNKRYYRFS-DVRDVALVHI 237
Query: 238 LVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMD 297
E PSA GR++ D + + +L+P+ I ++++ + + +K+ +
Sbjct: 238 KALETPSANGRYIIDGPNMSVNDIIDILRKLFPDLSIADTNEESEMNEMICQVCVEKVKN 297
Query: 298 LGLQFIPMDQIIKDSVESLKAK 319
LG++F PM ++D++ SLK K
Sbjct: 298 LGVEFTPMKSSLRDTIVSLKEK 319
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9UT59 | YKJ7_SCHPO | 1, ., 1, ., 1, ., - | 0.3021 | 0.9504 | 0.9136 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 323 | |||
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 1e-157 | |
| PLN02662 | 322 | PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase | 1e-122 | |
| PLN02214 | 342 | PLN02214, PLN02214, cinnamoyl-CoA reductase | 9e-93 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 4e-87 | |
| PLN02650 | 351 | PLN02650, PLN02650, dihydroflavonol-4-reductase | 2e-80 | |
| PLN02989 | 325 | PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase | 7e-77 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 3e-74 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 6e-66 | |
| PLN00198 | 338 | PLN00198, PLN00198, anthocyanidin reductase; Provi | 5e-61 | |
| PLN02896 | 353 | PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | 3e-60 | |
| PLN02583 | 297 | PLN02583, PLN02583, cinnamoyl-CoA reductase | 2e-54 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 4e-43 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 6e-40 | |
| PLN02686 | 367 | PLN02686, PLN02686, cinnamoyl-CoA reductase | 7e-35 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 6e-34 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 9e-25 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 4e-21 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 6e-21 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 2e-20 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 1e-17 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 2e-17 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 2e-15 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 3e-15 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 4e-15 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 1e-14 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 5e-13 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 2e-12 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 2e-12 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 4e-12 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 1e-11 | |
| cd05251 | 242 | cd05251, NmrA_like_SDR_a, NmrA (a transcriptional | 2e-11 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 4e-11 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 7e-11 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 9e-11 | |
| cd05269 | 272 | cd05269, TMR_SDR_a, triphenylmethane reductase (TM | 2e-10 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 3e-10 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 3e-10 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 9e-10 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-09 | |
| cd05231 | 259 | cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript | 2e-09 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 6e-09 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 1e-08 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 2e-08 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 2e-08 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 3e-08 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 3e-08 | |
| pfam08659 | 181 | pfam08659, KR, KR domain | 3e-08 | |
| cd05244 | 207 | cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu | 4e-08 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 9e-08 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 1e-07 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 2e-07 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 4e-07 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 5e-07 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 5e-07 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 6e-07 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 6e-07 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 7e-07 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 8e-07 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 9e-07 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 1e-06 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 1e-06 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 1e-06 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 2e-06 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 3e-06 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 3e-06 | |
| PRK12828 | 239 | PRK12828, PRK12828, short chain dehydrogenase; Pro | 3e-06 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 4e-06 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 5e-06 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 5e-06 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 7e-06 | |
| cd09812 | 339 | cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid | 7e-06 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 2e-05 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 2e-05 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 3e-05 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 4e-05 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 5e-05 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 7e-05 | |
| PLN00141 | 251 | PLN00141, PLN00141, Tic62-NAD(P)-related group II | 1e-04 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 2e-04 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 2e-04 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 2e-04 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 3e-04 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 3e-04 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 4e-04 | |
| PRK05865 | 854 | PRK05865, PRK05865, hypothetical protein; Provisio | 4e-04 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 6e-04 | |
| cd05274 | 375 | cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt | 0.001 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 0.001 | |
| PRK08219 | 227 | PRK08219, PRK08219, short chain dehydrogenase; Pro | 0.001 | |
| cd08947 | 224 | cd08947, NmrA_TMR_like_SDR_a, NmrA (a transcriptio | 0.001 | |
| cd05280 | 325 | cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ | 0.002 | |
| cd08955 | 376 | cd08955, KR_2_FAS_SDR_x, beta-ketoacyl reductase ( | 0.002 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 0.002 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 0.002 | |
| PRK08264 | 238 | PRK08264, PRK08264, short chain dehydrogenase; Val | 0.002 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 0.003 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 0.003 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 0.004 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 0.004 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 440 bits (1135), Expect = e-157
Identities = 158/294 (53%), Positives = 209/294 (71%), Gaps = 2/294 (0%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
VCVTG SG IGSWLV LL+R YTV ATV++ DE++ AHL LEGA RL+LF+ DLLD
Sbjct: 1 VCVTGASGFIGSWLVKRLLQRGYTVRATVRDPGDEKKVAHLLELEGAKERLKLFKADLLD 60
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-AKALGVKRVVVT 126
Y + AA+ GC GVFH+ASP D EDP+ +++ PAVKGT+NVL A AKA VKRVV T
Sbjct: 61 YGSFDAAIDGCDGVFHVASPVDFD-SEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVFT 119
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVV 186
SS++++ +P KV DE CW+D ++C++ ++WY LSKTLAEKAAWEFA+E GLD+V
Sbjct: 120 SSVAAVVWNPNRGEGKVVDESCWSDLDFCKKTKLWYALSKTLAEKAAWEFAEENGLDLVT 179
Query: 187 VNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSAC 246
VNP V+GP + P+LN+S ++L LL+G + Y+N + VH DVA AHIL+YE PSA
Sbjct: 180 VNPSLVVGPFLQPSLNSSSQLILSLLKGNAEMYQNGSLALVHVDDVADAHILLYEKPSAS 239
Query: 247 GRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGL 300
GR++C + + A +A+ YP+Y+IP +D QPG+ R K +KKL DLG
Sbjct: 240 GRYICSSHVVTRPELAALLAKKYPQYNIPTKFEDDQPGVARVKLSSKKLKDLGF 293
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 353 bits (907), Expect = e-122
Identities = 159/325 (48%), Positives = 218/325 (67%), Gaps = 6/325 (1%)
Query: 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLF 61
S E +VVCVTG SG I SWLV LLL+R YTV ATV++ +D ++T HL AL+GA RL LF
Sbjct: 1 SGEGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLF 60
Query: 62 QIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALGV 120
+ +LL+ + + V GC GVFH ASP D V DPQ +L++PAVKGT+NVL + AK V
Sbjct: 61 KANLLEEGSFDSVVDGCEGVFHTASPFYHD-VTDPQAELIDPAVKGTLNVLRSCAKVPSV 119
Query: 121 KRVVVTSSISSITPS--PKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAK 178
KRVVVTSS++++ + P P D V DE ++D +C ++++WY LSKTLAE+AAW+FAK
Sbjct: 120 KRVVVTSSMAAVAYNGKPLTP-DVVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAK 178
Query: 179 EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHIL 238
E G+D+V +NP V+GP++ PTLN S +L L+ G T+ N V +DVA AHI
Sbjct: 179 ENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLING-AQTFPNASYRWVDVRDVANAHIQ 237
Query: 239 VYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDL 298
+E PSA GR+ VE + HY + V + ELYP +P D +P + + +K L
Sbjct: 238 AFEIPSASGRYCLVERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEKAKSL 297
Query: 299 GLQFIPMDQIIKDSVESLKAKGFIS 323
G++FIP++ +KD+VESLK KGF+S
Sbjct: 298 GIEFIPLEVSLKDTVESLKEKGFLS 322
|
Length = 322 |
| >gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 279 bits (714), Expect = 9e-93
Identities = 151/323 (46%), Positives = 203/323 (62%), Gaps = 7/323 (2%)
Query: 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLF 61
S + VCVTG G I SW+V +LLER YTV TV+N D + T HL+ LEG RL L
Sbjct: 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLILC 65
Query: 62 QIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK 121
+ DL DY+A+ AA+ GC GVFH ASP V D Q++ PAV G V+ AA VK
Sbjct: 66 KADLQDYEALKAAIDGCDGVFHTASP-----VTDDPEQMVEPAVNGAKFVINAAAEAKVK 120
Query: 122 RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG 181
RVV+TSSI ++ P + V DE CW+D ++C+ + WY K +AE+AAWE AKEKG
Sbjct: 121 RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEKG 180
Query: 182 LDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241
+D+VV+NP V+GP + PT+NAS+ +L+ L G TY N V +DVALAH+LVYE
Sbjct: 181 VDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYE 240
Query: 242 NPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQ-PGLLRTKDGAKKLMDLGL 300
PSA GR+L E+ H G+ V +A+L+PEY +P KD + P K +K+ DLGL
Sbjct: 241 APSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGL 300
Query: 301 QFIPMDQIIKDSVESLKAKGFIS 323
+F Q + D+V+SL+ KG ++
Sbjct: 301 EFTSTKQSLYDTVKSLQEKGHLA 323
|
Length = 342 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 264 bits (675), Expect = 4e-87
Identities = 141/321 (43%), Positives = 207/321 (64%), Gaps = 4/321 (1%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M+ ++VCVTG SG I SW+V LLL R YTV ATV++L+D ++T HL AL+GA RL+L
Sbjct: 1 MNGGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-G 119
F+ DLL+ + A+ GC VFH ASP V+DPQ +L++PA+KGT+NVL K
Sbjct: 61 FKADLLEESSFEQAIEGCDAVFHTASPVFF-TVKDPQTELIDPALKGTINVLNTCKETPS 119
Query: 120 VKRVVVTSSISSI-TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAK 178
VKRV++TSS +++ P A+ V DE ++D CR+ + WYPLSK LAE AAWEFAK
Sbjct: 120 VKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAK 179
Query: 179 EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHIL 238
+ G+D+VV+NPG + GP++ PTLN S+ +++ + G + + N F V +DVALAHI
Sbjct: 180 DNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFING-KNLFNNRFYRFVDVRDVALAHIK 238
Query: 239 VYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDL 298
E PSA GR++ I D + + EL+P+ I ++++ + K +K+ +L
Sbjct: 239 ALETPSANGRYIIDGPIMSVNDIIDILRELFPDLCIADTNEESEMNEMICKVCVEKVKNL 298
Query: 299 GLQFIPMDQIIKDSVESLKAK 319
G++F PM ++D++ SLK K
Sbjct: 299 GVEFTPMKSSLRDTILSLKEK 319
|
Length = 322 |
| >gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Score = 248 bits (634), Expect = 2e-80
Identities = 131/328 (39%), Positives = 194/328 (59%), Gaps = 9/328 (2%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M + E VCVTG SG IGSWLV LLER YTV ATV++ ++ ++ HL L GA TRL L
Sbjct: 1 MGSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-AKALG 119
++ DL + A+ GCTGVFH+A+P + +DP+N+++ P V G ++++ A AKA
Sbjct: 61 WKADLAVEGSFDDAIRGCTGVFHVATPMDFES-KDPENEVIKPTVNGMLSIMKACAKAKT 119
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI--W-YPLSKTLAEKAAWEF 176
V+R+V TSS ++ V DEDCW+D ++CR+ ++ W Y +SKTLAEKAAW++
Sbjct: 120 VRRIVFTSSAGTVNVEEH--QKPVYDEDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKY 177
Query: 177 AKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-VHFKDVALA 235
A E GLD + + P V+GP I ++ S++ L L+ G Y G VH D+ A
Sbjct: 178 AAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLCNA 237
Query: 236 HILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL 295
HI ++E+P+A GR++C + D + E YPEY+IP L + +KKL
Sbjct: 238 HIFLFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKSVEFSSKKL 297
Query: 296 MDLGLQF-IPMDQIIKDSVESLKAKGFI 322
DLG F ++ + ++E+ + KG I
Sbjct: 298 TDLGFTFKYSLEDMFDGAIETCREKGLI 325
|
Length = 351 |
| >gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 238 bits (607), Expect = 7e-77
Identities = 135/326 (41%), Positives = 199/326 (61%), Gaps = 5/326 (1%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M+ +VVCVTG SG I SW+V LLL R YT++ATV++ D ++T HL AL+GA RL+L
Sbjct: 1 MADGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALG 119
F+ DLLD + A+ GC VFH ASP + DPQ +L+NPAV GT+NVL T K
Sbjct: 61 FKADLLDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSS 120
Query: 120 VKRVVVTSSISSI-TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAK 178
VKRV++TSS++++ P K + V DE +T+ + + + WY LSKTLAE AAW FAK
Sbjct: 121 VKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAK 180
Query: 179 EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHIL 238
+ +D++V+NPG V GP++ PTLN S+ +++ L++G + + V +DVALAH+
Sbjct: 181 DNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKG-KNPFNTTHHRFVDVRDVALAHVK 239
Query: 239 VYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKD-TQPGLLRTKDGAKKLMD 297
E PSA GR++ + D + E +P+ I +D T+ + K+
Sbjct: 240 ALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKS 299
Query: 298 LGL-QFIPMDQIIKDSVESLKAKGFI 322
LG+ +F P + ++D+V SLK K +
Sbjct: 300 LGIIEFTPTETSLRDTVLSLKEKCLV 325
|
Length = 325 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 3e-74
Identities = 105/296 (35%), Positives = 152/296 (51%), Gaps = 10/296 (3%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+V VTG +G I S +V LL+ Y V TV++LS + L G + RL +D L
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDRLEFVIVDDL 60
Query: 67 -DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVV 124
+A A+ G V H+ASP D ++ +++PAV+GT+NVL AAKA G VKRVV
Sbjct: 61 TAPNAWDEALKGVDYVIHVASP-FPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSVKRVV 119
Query: 125 VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW-YPLSKTLAEKAAWEFAKE--KG 181
+TSS++++ KV E+ W D + N + Y SKTLAEKAAWEF KE
Sbjct: 120 LTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAAWEFVKENKPK 179
Query: 182 LDVVVVNPGTVMGPVI-PPTLNASMLMLLRLLQGC-TDTYENFFMGSVHFKDVALAHILV 239
+++ +NPG V+GP + LN+S ++ +LL G N G V +DVA AH+
Sbjct: 180 FELITINPGYVLGPSLLADELNSSNELINKLLDGKLPAIPPNLPFGYVDVRDVADAHVRA 239
Query: 240 YENPSACG-RHLCVEAISHYGDFVAKVAELYPEYDIP-RLPKDTQPGLLRTKDGAK 293
E+P A G R + + + + E +P+ P P +L D K
Sbjct: 240 LESPEAAGQRFIVSAGPFSFQEIADLLREEFPQLTAPFPAPNPLMLSILVKFDNRK 295
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 209 bits (532), Expect = 6e-66
Identities = 105/294 (35%), Positives = 143/294 (48%), Gaps = 11/294 (3%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTG SG + S +V LLER Y V ATV++ S ++ HL L+ RL L DL D
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLDLDAKPGRLELAVADLTD 60
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVT 126
+ + GC GVFH+A+P +DP N+++ PA+ GT+N L AA A VKR V+T
Sbjct: 61 EQSFDEVIKGCAGVFHVATPVSFSS-KDP-NEVIKPAIGGTLNALKAAAAAKSVKRFVLT 118
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCR--QNEIW-YPLSKTLAEKAAWEFAKEKGLD 183
SS S+ V DE W EE+ + W Y SKTLAEKAAW+FA E +D
Sbjct: 119 SSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFADENNID 178
Query: 184 VVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS----VHFKDVALAHILV 239
++ V P +G + +S + L+ G + VH D+ LAHI
Sbjct: 179 LITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGYYVHVVDICLAHIGC 238
Query: 240 YENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAK 293
E P A GR++C + + + + YP Y P D Q L AK
Sbjct: 239 LELPIARGRYICTAGNFDWNTLLKTLRKKYPSYTFPTDFPD-QGQDLSKFSSAK 291
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 5e-61
Identities = 119/334 (35%), Positives = 187/334 (55%), Gaps = 30/334 (8%)
Query: 9 CVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY 68
CV GG+G + S L+ LLL++ Y V+ TV++ ++++ AHL+AL+ L++F DL D
Sbjct: 13 CVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGD-LKIFGADLTDE 71
Query: 69 DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-AKALGVKRVVVTS 127
++ A + GC VFH+A+P + EDP+N ++ PA++G NVL A AKA VKRV++TS
Sbjct: 72 ESFEAPIAGCDLVFHVATP-VNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTS 130
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNE--IW-YPLSKTLAEKAAWEFAKEKGLDV 184
S ++++ + V +E WTD E+ + W YP SKTLAEKAAW+FA+E +D+
Sbjct: 131 SAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEENNIDL 190
Query: 185 VVVNPGTVMGPV----IPPTLNASML------MLLRLLQGCTDTYENFFMGSV---HFKD 231
+ V P + GP IP +L+ +M L+ L+G GS+ H +D
Sbjct: 191 ITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGM-----QMLSGSISITHVED 245
Query: 232 VALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTK-- 289
V AHI + E SA GR++C A + + + + YP+Y + P D + K
Sbjct: 246 VCRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQV---PTDFGDFPSKAKLI 302
Query: 290 DGAKKLMDLGLQF-IPMDQIIKDSVESLKAKGFI 322
++KL+ G F +++I +VE KAKG +
Sbjct: 303 ISSEKLISEGFSFEYGIEEIYDQTVEYFKAKGLL 336
|
Length = 338 |
| >gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 3e-60
Identities = 124/338 (36%), Positives = 191/338 (56%), Gaps = 28/338 (8%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
CVTG +G IGSWLV LLL+R YTVHAT+++ + L + D RLRLF+ DL +
Sbjct: 13 YCVTGATGYIGSWLVKLLLQRGYTVHATLRDP--AKSLHLLSKWKEGD-RLRLFRADLQE 69
Query: 68 YDAIAAAVTGCTGVFHLA-------SPCIVDKVEDPQNQLLNPAVKGTVNVLTAA-KALG 119
+ AV GC GVFH+A S + E Q+++++PA+KGT+NVL + K+
Sbjct: 70 EGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKT 129
Query: 120 VKRVVVTSSISSITPSP---KWPADKVKDEDCWT--DEEYCRQNEIW-YPLSKTLAEKAA 173
VKRVV TSSIS++T +W A V DE C T D + + W Y LSK L E+AA
Sbjct: 130 VKRVVFTSSISTLTAKDSNGRWRA--VVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAA 187
Query: 174 WEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE-----NFFMGS-- 226
+++AKE G+D+V V TV GP + P++ +S+ +LL + G + + N MGS
Sbjct: 188 FKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMGSIA 247
Query: 227 -VHFKDVALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGL 285
VH +D+ AHI + E A GR++C + + +++ YP +I + + G
Sbjct: 248 LVHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGS 307
Query: 286 LRTKDGAKKLMDLGLQF-IPMDQIIKDSVESLKAKGFI 322
+ ++ +KKL DLG ++ +++II +++ GF+
Sbjct: 308 IPSEISSKKLRDLGFEYKYGIEEIIDQTIDCCVDHGFL 345
|
Length = 353 |
| >gnl|CDD|178195 PLN02583, PLN02583, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 2e-54
Identities = 87/260 (33%), Positives = 142/260 (54%), Gaps = 26/260 (10%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
+ ++ VCV SG +G WLV LL R YTVHA V+ + ++ L + RL++
Sbjct: 2 FDESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKV 61
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQ---LLNPAVKGTVNVLTA-AK 116
F +D LDY +I A+ GC+G+F C D D + +++ V+ NVL A A+
Sbjct: 62 FDVDPLDYHSILDALKGCSGLF-----CCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQ 116
Query: 117 ALGVKRVVVTSSISSITPSPKWPADKVK-----DEDCWTDEEYCRQNEIWYPLSKTLAEK 171
+++VV TSS++++ W D + DE W+D+ +CR+ ++W+ L+KTL+EK
Sbjct: 117 TDTIEKVVFTSSLTAVI----WRDDNISTQKDVDERSWSDQNFCRKFKLWHALAKTLSEK 172
Query: 172 AAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKD 231
AW A ++G+++V +N G +MGP S+ L+G YEN + +V
Sbjct: 173 TAWALAMDRGVNMVSINAGLLMGP--------SLTQHNPYLKGAAQMYENGVLVTVDVNF 224
Query: 232 VALAHILVYENPSACGRHLC 251
+ AHI +E+ S+ GR+LC
Sbjct: 225 LVDAHIRAFEDVSSYGRYLC 244
|
Length = 297 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 4e-43
Identities = 107/350 (30%), Positives = 149/350 (42%), Gaps = 77/350 (22%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
VTG +G +GS LV LL + Y V A V++ SD L L + + + DL D
Sbjct: 3 VTGATGFLGSNLVRALLAQGYRVRALVRSGSD---AVLLDGL-----PVEVVEGDLTDAA 54
Query: 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLL---NPAVKGTVNVLTAAKALGVKRVVVT 126
++AAA+ GC VFHLA+ + + L N V+GT NVL AA GV+RVV T
Sbjct: 55 SLAAAMKGCDRVFHLAA---FTSLWAKDRKELYRTN--VEGTRNVLDAALEAGVRRVVHT 109
Query: 127 SSISSITPSPKWPADKVKDED-CWTDEE----YCRQNEIWYPLSKTLAEKAAWEFAKEKG 181
SSI+++ P D DE W + Y R SK LAE E A +G
Sbjct: 110 SSIAALGGPP----DGRIDETTPWNERPFPNDYYR--------SKLLAELEVLEAA-AEG 156
Query: 182 LDVVVVNPGTVMGPV-IPPTLNASMLMLLRLLQG----CTDTYENFFMGSVHFKDVALAH 236
LDVV+VNP V GP PT ++ L +L L G +F V +DVA H
Sbjct: 157 LDVVIVNPSAVFGPGDEGPT--STGLDVLDYLNGKLPAYPPGGTSF----VDVRDVAEGH 210
Query: 237 ILVYENPSACGRHLCV-EAISHYGDFVAKVAELY----PEYDIP---------------- 275
I E R++ E +S + +AE+ P IP
Sbjct: 211 IAAMEKGRRGERYILGGENLS-FKQLFETLAEITGVKPPRRTIPPWLLKAVAALSELKAR 269
Query: 276 ---RLPKDTQPGLLRTK------DGAKKLMDLGLQFIPMDQIIKDSVESL 316
+ P T P R K +LG P+++ ++D++ L
Sbjct: 270 LTGKPPLLT-PRTARVLRRNYLYSSDKARRELGYSPRPLEEALRDTLAWL 318
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (358), Expect = 6e-40
Identities = 89/326 (27%), Positives = 136/326 (41%), Gaps = 33/326 (10%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
VTGG+G IGS LV LL + V + L D + + + +DL D D
Sbjct: 5 VTGGAGFIGSHLVERLLAAGHDVRG-LDRLRDGLDPL--------LSGVEFVVLDLTDRD 55
Query: 70 AIAAAVTGC-TGVFHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+ G V HLA+ V D + L+ V GT+N+L AA+A GVKR V S
Sbjct: 56 LVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFAS 115
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEI-WYPLSKTLAEKAAWEFAKEKGLDVVV 186
S+S + P DE+ + Y +SK AE+ +A+ GL VV+
Sbjct: 116 SVSVVYGDPPPL---------PIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVI 166
Query: 187 VNPGTVMGPVIPPTLNASMLMLL--RLLQG----CTDTYENFFMGSVHFKDVALAHILVY 240
+ P V GP P L++ ++ +LL+G + V+ DVA A +L
Sbjct: 167 LRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLAL 226
Query: 241 ENPSACGRHLCVEAISH-YGDFVAKVAELYPE--YDIPRLPKDTQPGLLRTK--DGAKKL 295
ENP ++ + VAE I +P + L K D +K
Sbjct: 227 ENPDGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKAR 286
Query: 296 MDLGLQ-FIPMDQIIKDSVESLKAKG 320
LG + + +++ + D++E L K
Sbjct: 287 AALGWEPKVSLEEGLADTLEWLLKKL 312
|
Length = 314 |
| >gnl|CDD|215370 PLN02686, PLN02686, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 7e-35
Identities = 85/290 (29%), Positives = 136/290 (46%), Gaps = 31/290 (10%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQ 62
EA +VCVTGG +G +V LL Y+V V + + L+ +E +
Sbjct: 52 EARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT---QEDKEKLREMEMFGEMGRSNDG 108
Query: 63 ID-----LLDYDAIAAAVTGCTGVFHLASPCIVDK--VEDPQNQLLNPAVKGTVNVLTA- 114
I L + +++ A GC GVFH ++ VD + + K + NV+ A
Sbjct: 109 IWTVMANLTEPESLHEAFDGCAGVFHTSA--FVDPAGLSGYTKSMAELEAKASENVIEAC 166
Query: 115 AKALGVKRVVVTSSISSITPSPKWPAD--KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKA 172
+ V++ V TSS+ + +P D V DE+ W+DE +CR N++WY L K AEKA
Sbjct: 167 VRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFCRDNKLWYALGKLKAEKA 226
Query: 173 AWEFAKEKGLDVVVVNPGTVMGPVI---PPTLNASMLMLLRLLQGCTDTYENFFMGSVHF 229
AW A+ KGL + + P V GP T A+ + L+G + + + +
Sbjct: 227 AWRAARGKGLKLATICPALVTGPGFFRRNST--AT----IAYLKGAQEMLADGLLATADV 280
Query: 230 KDVALAHILVYE---NPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPR 276
+ +A AH+ VYE N +A GR++C + + D + EL + +P
Sbjct: 281 ERLAEAHVCVYEAMGNKTAFGRYICFDHVVSRED---EAEELARQIGLPI 327
|
Length = 367 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 6e-34
Identities = 114/356 (32%), Positives = 163/356 (45%), Gaps = 71/356 (19%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKA--LEGADTRLRLFQIDL 65
V VTG +G +GS +V LLLE+ V V+ SD R L +EG DL
Sbjct: 3 VLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEG----------DL 52
Query: 66 LDYDAIAAAVTGCTGVFHLASPCIVDK---VEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
D ++ AV GC +FH+A+ D DP+ ++ V+GT N+L AA GV+R
Sbjct: 53 RDPASLRKAVAGCRALFHVAA----DYRLWAPDPE-EMYAANVEGTRNLLRAALEAGVER 107
Query: 123 VVVTSSISSIT-PSPKWPADKVKDEDCWTDEE-----YCRQNEIWYPLSKTLAEKAAWEF 176
VV TSS++++ PAD E + + Y R SK LAE+AA E
Sbjct: 108 VVYTSSVATLGVRGDGTPAD----ETTPSSLDDMIGHYKR--------SKFLAEQAALEM 155
Query: 177 AKEKGLDVVVVNPGTVMGPV-IPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALA 235
A EKGL VV+VNP T +GP I PT +++ L G Y + + VH DVA
Sbjct: 156 AAEKGLPVVIVNPSTPIGPRDIKPTPTGR--IIVDFLNGKMPAYVDTGLNLVHVDDVAEG 213
Query: 236 HILVYENPSACGRH-LCVEAISHYGDFVAKVAELY----PEYDIPRLP-------KDTQP 283
H+L E R+ L E ++ + K+AE+ P +PR +
Sbjct: 214 HLLALERGRIGERYILGGENLT-LKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALA 272
Query: 284 GLLR-----TKDG---AKKLM---------DLGLQFIPMDQIIKDSVESLKAKGFI 322
L T DG AKK M +LG + P + ++D+VE +A G++
Sbjct: 273 RLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQRPAREALRDAVEWFRANGYL 328
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 9e-25
Identities = 71/251 (28%), Positives = 105/251 (41%), Gaps = 38/251 (15%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ VTGG+G IGS LV LL+ Y V + E R+R + DL D
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSE---------SLNTGRIRFHEGDLTD 51
Query: 68 YDAIAAAVTGC--TGVFHLASPCIVD-KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124
DA+ + V HLA+ V EDP + V GT+ +L AA+ GVKR V
Sbjct: 52 PDALERLLAEVQPDAVIHLAAQSGVGASFEDP-ADFIRANVLGTLRLLEAARRAGVKRFV 110
Query: 125 VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDV 184
SS S + AD E D + Y +K AE+ +A+ GL
Sbjct: 111 FASS-SEVYG---DVADPPITE----DTPLGPLSP--YAAAKLAAERLVEAYARAYGLRA 160
Query: 185 VVVNPGTVMGPVIPPTLNASML--MLLRLLQGCTDTYENFFM---GS-----VHFKDVAL 234
V++ V GP P ++ ++ R+L+G + + G+ ++ DVA
Sbjct: 161 VILRLFNVYGPGNPDPFVTHVIPALIRRILEG-----KPILLLGDGTQRRDFLYVDDVAR 215
Query: 235 AHILVYENPSA 245
A +L E+P
Sbjct: 216 AILLALEHPDG 226
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 4e-21
Identities = 63/192 (32%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTGG+G IGS LV LLER + V + NLS T + L ++ + D+ D
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEVIV-LDNLS----TGKKENLPEVKPNVKFIEGDIRD 56
Query: 68 YDAIAAAVTGCTGVFHLAS-PCIVDKVEDPQNQLLNPA---VKGTVNVLTAAKALGVKRV 123
+ + A G VFH A+ + +EDP + V GT+N+L AA+ GVKR
Sbjct: 57 DELVEFAFEGVDYVFHQAAQASVPRSIEDP----IKDHEVNVLGTLNLLEAARKAGVKRF 112
Query: 124 VVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLD 183
V SS S P P DE++ Y +SK E FA+ GL
Sbjct: 113 VYASSSSVYGDPPYLP----------KDEDHPPNPLSPYAVSKYAGELYCQVFARLYGLP 162
Query: 184 VVVVNPGTVMGP 195
V + V GP
Sbjct: 163 TVSLRYFNVYGP 174
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 6e-21
Identities = 68/254 (26%), Positives = 91/254 (35%), Gaps = 80/254 (31%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ VTGG+G IGS LV LLER + V ID LD
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVV----------------------------IDRLD 32
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPA------VKGTVNVLTAAKALGVK 121
V HLA+ V P NP V GT+N+L AA+ GVK
Sbjct: 33 V------------VVHLAA-----LVGVPA-SWDNPDEDFETNVVGTLNLLEAARKAGVK 74
Query: 122 RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG 181
R V SS +S+ SP+ +E R Y +SK AE + + G
Sbjct: 75 RFVYASS-ASVYGSPEG--------LPEEEETPPRPLSP-YGVSKLAAEHLLRSYGESYG 124
Query: 182 LDVVVVNPGTVMGPVIPPTLNASML---MLLRLLQGCTDTYENFFMGS--------VHFK 230
L VV++ V GP + + R L+G + + +H
Sbjct: 125 LPVVILRLANVYGP--GQRPRLDGVVNDFIRRALEG-----KPLTVFGGGNQTRDFIHVD 177
Query: 231 DVALAHILVYENPS 244
DV A + ENP
Sbjct: 178 DVVRAILHALENPL 191
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-20
Identities = 58/193 (30%), Positives = 75/193 (38%), Gaps = 19/193 (9%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTG G IGS L LL + V A + L R D+ D
Sbjct: 2 VLVTGADGFIGSHLTERLLREGHEVRALDI-YNSFNSWGLLDNAVHD--RFHFISGDVRD 58
Query: 68 YDAIAAAVTGCTGVFHLASPC-IVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+ V C VFHLA+ I P + V GT+NVL AA L KRVV T
Sbjct: 59 ASEVEYLVKKCDVVFHLAALIAIPYSYTAPL-SYVETNVFGTLNVLEAACVLYRKRVVHT 117
Query: 127 SSISSI----TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGL 182
S+ S + P DED Y + Y SK A++ A+ + + GL
Sbjct: 118 ST-SEVYGTAQDVPI-------DED--HPLLYINKPRSPYSASKQGADRLAYSYGRSFGL 167
Query: 183 DVVVVNPGTVMGP 195
V ++ P GP
Sbjct: 168 PVTIIRPFNTYGP 180
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-17
Identities = 47/121 (38%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ VTGG+G IGS LV LLE V V NLS R E + R + DLLD
Sbjct: 2 ILVTGGAGFIGSHLVDRLLEEGNEVVV-VDNLSSGRREN--IEPEFENKAFRFVKRDLLD 58
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
A VFHLA+ V + L V T NVL A +A GVKR+V S
Sbjct: 59 TADKVAK-KDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFAS 117
Query: 128 S 128
S
Sbjct: 118 S 118
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-17
Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 23/235 (9%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTGGSG G LV LLER + +++ E + + D+ D
Sbjct: 2 VLVTGGSGFFGERLVKQLLERG-GTYVRSFDIAPPGEALSAWQHPN----IEFLKGDITD 56
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+ + A++G VFH A+ + P++ V GT NVL A + GV++ V TS
Sbjct: 57 RNDVEQALSGADCVFHTAAIVPLAG---PRDLYWEVNVGGTQNVLDACQRCGVQKFVYTS 113
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
S S I + + + D Y + Y +K +AE E L +
Sbjct: 114 SSSVI-----FGGQNIHNGD--ETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCAL 166
Query: 188 NPGTVMGP----VIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHIL 238
P + GP ++P + L++ + G + +F + ++A AHIL
Sbjct: 167 RPAGIFGPGDQGLVPILFEWAEKGLVKFVFGRGNNLVDF----TYVHNLAHAHIL 217
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-15
Identities = 65/245 (26%), Positives = 93/245 (37%), Gaps = 33/245 (13%)
Query: 10 VTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
VTGG G +G +V LLL V S E K L+ + D+ D
Sbjct: 2 VTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSK-LQVIT----YIEGDVTD 56
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKV-EDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+ A+ G V H A I+D + ++ ++ VKGT NVL A GV+ +V T
Sbjct: 57 KQDLRRALQGSDVVIHTA--AIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYT 114
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW---YPLSKTLAEKAAWE----FAKE 179
SS+ + P+ DE + YP SK LAEK + K
Sbjct: 115 SSMEVVGPNSY------GQPIVNGDETTPYE-STHQDPYPESKALAEKLVLKANGSTLKN 167
Query: 180 KGLDVVV-VNPGTVMGP---VIPPTLNASMLMLLRLLQ-GCTDTYENFFMGSVHFKDVAL 234
G + P + G + P L + L + G +N V+ +VA
Sbjct: 168 GGRLYTCALRPAGIFGEGDPFLFPFLVRLLKNGLAKFRTGD----KNVLSDRVYVGNVAW 223
Query: 235 AHILV 239
AHIL
Sbjct: 224 AHILA 228
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 3e-15
Identities = 58/211 (27%), Positives = 82/211 (38%), Gaps = 37/211 (17%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTG +G IG LV LL R V V+N + + L +L D
Sbjct: 2 VLVTGANGFIGRALVDKLLSRGEEVRIAVRNAENAEPSVVLA--------------ELPD 47
Query: 68 YDAIAAAVTGCTGVFHLASPCIV--DKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
D+ G V HLA+ V D+ DP + + T + AA GVKR V
Sbjct: 48 IDSFTDLFLGVDAVVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQGVKRFVF 107
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQN----EIWYPLSKTLAEKAAWEFAKEKG 181
SS+ KV E + + + Y SK AE+A E G
Sbjct: 108 LSSV------------KVNGEGT-VGAPFDETDPPAPQDAYGRSKLEAERALLELGASDG 154
Query: 182 LDVVVVNPGTVMGPVIPPTLNASMLMLLRLL 212
++VV++ P V GP + + L+RL+
Sbjct: 155 MEVVILRPPMVYGPGVR----GNFARLMRLI 181
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 4e-15
Identities = 63/215 (29%), Positives = 92/215 (42%), Gaps = 52/215 (24%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-------DERETAHLKALEGADTRLRL 60
V VTG G IGS LV L+ + Y V A V S D +E +
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKDKIE-------V 53
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLA----------SPCIVDKVEDPQNQLLNPAVKGTVN 110
D+ D D++ A+ GC VFHLA +P + ++ V GT+N
Sbjct: 54 VTGDIRDPDSVRKAMKGCDVVFHLAALIAIPYSYIAP----------DSYVDTNVTGTLN 103
Query: 111 VLTAAKALGVKRVVVTSSISSITPSPKW-PADKVKDEDCWTDEEYCRQNEIWYPLSKTLA 169
VL AA+ LGV++VV TS+ S + + ++ P DE++ Q + Y SK A
Sbjct: 104 VLQAARDLGVEKVVHTST-SEVYGTAQYVP----------IDEKHPLQGQSPYSASKIGA 152
Query: 170 EKAAWEFAKEKGLDVVVVNPGTVMGP------VIP 198
++ A F + V ++ P GP VIP
Sbjct: 153 DQLALSFYRSFNTPVTIIRPFNTYGPRQSARAVIP 187
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-14
Identities = 54/174 (31%), Positives = 70/174 (40%), Gaps = 20/174 (11%)
Query: 7 VVCVTGGSGCIGSWLVSLLLER-------RYTVHATVKNLSDERETAHLKALEGADTRLR 59
V VTGG G +G ++ LLLER R A L + E + K T +
Sbjct: 1 VCLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGK------TYVT 54
Query: 60 LFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLL-NPAVKGTVNVLTAAKAL 118
+ D+ D + A G + V H A IVD P + L V GT VL A
Sbjct: 55 DIEGDIKDLSFLFRACQGVSVVIHTA--AIVDVFGPPNYEELEEVNVNGTQAVLEACVQN 112
Query: 119 GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKA 172
VKR+V TSSI P+ K + + D Y + Y SK LAE
Sbjct: 113 NVKRLVYTSSIEVAGPNFK--GRPIFNGV--EDTPYEDTSTPPYASSKLLAENI 162
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-13
Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 19/192 (9%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL---- 65
VTGG+G +G LV LLE + V V++ S ++ R+R+ + DL
Sbjct: 3 VTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQPN 62
Query: 66 --LDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRV 123
L A V H A+ + P + GT +VL A L ++R
Sbjct: 63 LGLSAAASRELAGKVDHVIHCAA---SYDFQAPNEDAWRTNIDGTEHVLELAARLDIQRF 119
Query: 124 VVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLD 183
S+ + + +N Y SK AE+ A + +
Sbjct: 120 HYVSTAYVAGNREGN------IRETELNPGQNFKN--PYEQSKAEAEQLVRAAATQ--IP 169
Query: 184 VVVVNPGTVMGP 195
+ V P V+G
Sbjct: 170 LTVYRPSIVVGD 181
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-12
Identities = 44/186 (23%), Positives = 63/186 (33%), Gaps = 40/186 (21%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
V G +G G LV LL R + V A +N S + + Q DL D
Sbjct: 3 VIGATGKTGRRLVKELLARGHQVTALSRNPS-----------KAPAPGVTPVQKDLFDLA 51
Query: 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129
+A A+ G V G ++L AA GV+R+VV S+
Sbjct: 52 DLAEALAGVDAVVDAFGA-------------RPDDSDGVKHLLDAAARAGVRRIVVVSAA 98
Query: 130 SSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNP 189
+ + +D Y R A+ AA E + GLD +V P
Sbjct: 99 G----LYRDEPGTFRLDDAPLFPPYAR------------AKAAAEELLRASGLDWTIVRP 142
Query: 190 GTVMGP 195
G +
Sbjct: 143 GALFDE 148
|
Length = 182 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 59/212 (27%), Positives = 82/212 (38%), Gaps = 28/212 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ VTG +G +G L L V D R G+ ++ ++D+ D
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPR-VIGVD--GLDRRRP------PGSPPKVEYVRLDIRD 51
Query: 68 YDAI-AAAVTGCTGVFHLASPCIVDKVED-PQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
A V HLA I+D D + +N V GT NVL A A GV RVVV
Sbjct: 52 PAAADVFREREADAVVHLAF--ILDPPRDGAERHRIN--VDGTQNVLDACAAAGVPRVVV 107
Query: 126 TSSISSITPSPKWPADKVKDEDC--WTDEEYCRQNEIWYPLSKTLAEKAAWEF-AKEKGL 182
TSS++ P PA +D + Y R K E+ EF + L
Sbjct: 108 TSSVAVYGAHPDNPAPLTEDAPLRGSPEFAYSRD--------KAEVEQLLAEFRRRHPEL 159
Query: 183 DVVVVNPGTVMGPVIPPTLNASMLMLLRLLQG 214
+V V+ P T++GP T + R L
Sbjct: 160 NVTVLRPATILGPGTRNTTRD--FLSPRRLPV 189
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 4e-12
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-GADTRLRLFQIDLL 66
V VTGG+G IGS V LLE Y V + NLS H +AL R+ ++ D+
Sbjct: 2 VLVTGGAGYIGSHTVVELLEAGYDVV-VLDNLS----NGHREALPRIEKIRIEFYEGDIR 56
Query: 67 DYDAIAAAVT--GCTGVFHLASPCIV-DKVEDP----QNQLLNPAVKGTVNVLTAAKALG 119
D A+ V H A+ V + V+ P N ++ GT+N+L A +A G
Sbjct: 57 DRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNNVV-----GTLNLLEAMRAHG 111
Query: 120 VKRVVVTSS 128
VK V +SS
Sbjct: 112 VKNFVFSSS 120
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 41/186 (22%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V V G +G +G +V LL+R Y V A V++ S + A + DL D
Sbjct: 2 VLVVGATGKVGRHVVRELLDRGYQVRALVRDPSQAEKLEAAGA--------EVVVGDLTD 53
Query: 68 YDAIAAAVTGCTGV-FHLASPCIVDKVEDPQNQLLNPAV--KGTVNVLTAAKALGVKRVV 124
+++AAA+ G V S + AV G +N++ AAK GVKR V
Sbjct: 54 AESLAAALEGIDAVISAAGS--------GGKGGPRTEAVDYDGNINLIDAAKKAGVKRFV 105
Query: 125 VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDV 184
+ SSI + Y +K AE ++ + GLD
Sbjct: 106 LVSSIGA-DKPSHPLEALGP-----------------YLDAKRKAE----DYLRASGLDY 143
Query: 185 VVVNPG 190
+V PG
Sbjct: 144 TIVRPG 149
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 10 VTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY 68
V G +G G +V LL+ + V A ++ S A A G + + Q DL D
Sbjct: 3 VFGATGKQGGSVVRALLKDPGFKVRALTRDPS--SPAAKALAAPGVE----VVQGDLDDP 56
Query: 69 DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124
+++ AA+ G GVF + D + NV+ AAK GV+ V
Sbjct: 57 ESLEAALKGVYGVFLVT---------DFWEAGGEDEIAQGKNVVDAAKRAGVQHFV 103
|
NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 4e-11
Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 29/230 (12%)
Query: 8 VCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHL-KALEGADT-------RL 58
V +TG +G +G++L+ LL+R V V+ SDE A L K + R+
Sbjct: 3 VLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRV 62
Query: 59 R---------LFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTV 109
+ + +A V + H A+ +V+ V P ++L V GT
Sbjct: 63 EVVAGDLAEPDLGLSERTWQELAENV---DLIIHNAA--LVNHVF-PYSELRGANVLGTA 116
Query: 110 NVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW-YPLSKTL 168
VL A K + SSIS ++ ++ D D + Q Y SK +
Sbjct: 117 EVLRLAATGKPKPLHYVSSIS--VGETEYYSNFTVDFDEISPTRNVGQGLAGGYGRSKWV 174
Query: 169 AEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT 218
AEK E A ++GL V + PG + G LN L RL+ G
Sbjct: 175 AEKLVRE-AGDRGLPVTIFRPGYITGDSRTGALNTRD-FLTRLVLGLLQL 222
|
Length = 382 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-11
Identities = 50/188 (26%), Positives = 74/188 (39%), Gaps = 35/188 (18%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ + G +G IG L LLE+ + V V+N + + + + + DL D
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVRNTK--------RLSKEDQEPVAVVEGDLRD 52
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
D+++ AV G V HLA + + V+GT NVL AAK GVK + S
Sbjct: 53 LDSLSDAVQGVDVVIHLAGAPRDTRDFCEVD------VEGTRNVLEAAKEAGVKHFIFIS 106
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-GLDVVV 186
S+ + D T+ P S LA KA E + L +
Sbjct: 107 SLGA-----------YGDLHEETEPS---------PSSPYLAVKAKTEAVLREASLPYTI 146
Query: 187 VNPGTVMG 194
V PG + G
Sbjct: 147 VRPGVIYG 154
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 9e-11
Identities = 73/261 (27%), Positives = 99/261 (37%), Gaps = 66/261 (25%)
Query: 8 VCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V GGSG +G LV LL R TVH D R T L + R++ DL
Sbjct: 2 CLVVGGSGFLGRHLVEQLLRRGNPTVHV-----FDIRPTFEL--DPSSSGRVQFHTGDLT 54
Query: 67 DYDAIAAAVT--GCTGVFHLASPC------IVDKVEDPQNQLLNPAVKGTVNVLTAAKAL 118
D + A G VFH ASP + KV V+GT NV+ A +
Sbjct: 55 DPQDLEKAFNEKGPNVVFHTASPDHGSNDDLYYKVN----------VQGTRNVIEACRKC 104
Query: 119 GVKRVVVTSSISSITPS-------PKWP-ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAE 170
GVK++V TSS S + P DK +D Y +K LAE
Sbjct: 105 GVKKLVYTSSASVVFNGQDIINGDESLPYPDKHQDA---------------YNETKALAE 149
Query: 171 KAAWEFAK--EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-- 226
K + A E GL + P + GP ++ LL+ + F +G
Sbjct: 150 KLVLK-ANDPESGLLTCALRPAGIFGP-------GDRQLVPGLLKAAKNGKTKFQIGDGN 201
Query: 227 -----VHFKDVALAHILVYEN 242
+ ++VA AHIL +
Sbjct: 202 NLFDFTYVENVAHAHILAADA 222
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 20/118 (16%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
VTG +G +G+ +V LLL + +V A V+N E A A +G + R Q D D +
Sbjct: 3 VTGATGKLGTAVVELLLAKVASVVALVRNP----EKAKAFAADGVEVR----QGDYDDPE 54
Query: 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+ A G + ++ + D++ K N + AAK GVK +V S
Sbjct: 55 TLERAFEGVDRLLLISPSDLEDRI---------QQHK---NFIDAAKQAGVKHIVYLS 100
|
TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 3e-10
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+TG +G GS+L LLE+ Y VH V+ S T + L R+ L DL
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSS-FNTDRIDHLYINKDRITLHYGDLT 59
Query: 67 DYDAIAAAV--TGCTGVFHLASPCIVDKV--EDPQNQLLNPAVKGTVNVLTAAKALGVK- 121
D ++ A+ ++HLA+ V KV +DP+ AV GT+N+L A + LG+
Sbjct: 60 DSSSLRRAIEKVRPDEIYHLAAQSHV-KVSFDDPEYTAEVNAV-GTLNLLEAIRILGLDA 117
Query: 122 RVVVTSS 128
R SS
Sbjct: 118 RFYQASS 124
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTGG+G IGS V LL+ + V + NLS H AL + + ++ DLLD
Sbjct: 3 VLVTGGAGYIGSHTVRQLLKTGHEVVV-LDNLS----NGHKIAL--LKLQFKFYEGDLLD 55
Query: 68 YDAIAA--AVTGCTGVFHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124
+ A V H A+ V + V++P N V GT+N++ A GVK+ +
Sbjct: 56 RALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDN-NVVGTLNLIEAMLQTGVKKFI 114
Query: 125 VTSS 128
+S+
Sbjct: 115 FSST 118
|
Length = 329 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 9e-10
Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 23/208 (11%)
Query: 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD---ERETAHLKALEGADTRLRLFQ 62
V +TGG+G IGS L L++ + V NL A LKA D +R
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQGWEVIG-FDNLMRRGSFGNLAWLKANR-EDGGVRFVH 58
Query: 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDK-VEDPQNQLLNPAVKGTVNVLTAAKALGVK 121
D+ + + + + H A+ V P+ GT+NVL AA+
Sbjct: 59 GDIRNRNDLEDLFEDIDLIIHTAAQPSVTTSASSPR-LDFETNALGTLNVLEAARQHAPN 117
Query: 122 RVVVTSSISSITP-SPKWPADKVKDEDC-WT-DEEYCRQNEI-----------WYPLSKT 167
+ +S + + P + +++ + + E I Y SK
Sbjct: 118 APFIFTSTNKVYGDLPNY--LPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGASKG 175
Query: 168 LAEKAAWEFAKEKGLDVVVVNPGTVMGP 195
A++ E+ + GL VV G + GP
Sbjct: 176 AADQYVQEYGRIFGLKTVVFRCGCLTGP 203
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 48/194 (24%), Positives = 69/194 (35%), Gaps = 30/194 (15%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V + GG+G IGS LV LLE V+ + E + + D +
Sbjct: 2 VLIVGGNGFIGSHLVDALLEEGP----QVRVFD-----RSIPPYELPLGGVDYIKGDYEN 52
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPA------VKGTVNVLTAAKALGVK 121
+ +A+ G V HLAS P NP V TV +L A A G+
Sbjct: 53 RADLESALVGIDTVIHLASTTN------PATSNKNPILDIQTNVAPTVQLLEACAAAGIG 106
Query: 122 RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG 181
+++ SS ++ P+ E T Y +SK EK + G
Sbjct: 107 KIIFASSGGTVYGVPEQLP---ISESDPTLP------ISSYGISKLAIEKYLRLYQYLYG 157
Query: 182 LDVVVVNPGTVMGP 195
LD V+ GP
Sbjct: 158 LDYTVLRISNPYGP 171
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 47/127 (37%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
VTG +G IGS + + LLE V A V+ SDER A L A GA+ + DL D
Sbjct: 3 VTGATGRIGSKVATTLLEAGRPVRALVR--SDER-AAALAAR-GAE----VVVGDLDDPA 54
Query: 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129
+AAA+ G VF LA P P V+ +A + GVKRVV SS+
Sbjct: 55 VLAAALAGVDAVFFLAPP-------APTADARPGYVQAAEAFASALREAGVKRVVNLSSV 107
Query: 130 SSITPSP 136
+ SP
Sbjct: 108 GADPESP 114
|
Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 6e-09
Identities = 48/228 (21%), Positives = 75/228 (32%), Gaps = 33/228 (14%)
Query: 10 VTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDE-------------------RETAHL 48
+TG +G +G L+ LL ++ V+ E + +
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60
Query: 49 KALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGT 108
+ G D + D+ +A V + H A+ V+ VE L V GT
Sbjct: 61 IPVAG-DLSEPNLGLSDEDFQELAEEVDV---IIHNAA--TVNFVEPYS-DLRATNVLGT 113
Query: 109 VNVLTAAKALGVKRVV-VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKT 167
VL AK + V+++ + K ++ N Y SK
Sbjct: 114 REVLRLAKQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNG--YTQSKW 171
Query: 168 LAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC 215
LAE+ E A GL VV+ P + G +N LL G
Sbjct: 172 LAEQLVREAA--GGLPVVIYRPSIITGESRTGWINGDDFGPRGLLGGA 217
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-08
Identities = 62/212 (29%), Positives = 80/212 (37%), Gaps = 57/212 (26%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNL----SDER---ETAHLKALEGADTRLRL 60
V VTGG G IGS L +L+ K + DE E E D +LR
Sbjct: 1 VLVTGGGGSIGSELCRQILKFN------PKKIILFSRDEFKLYEIRQELRQEYNDPKLRF 54
Query: 61 FQIDLLDYDAIAAAVT--GCTGVFHLASPCIVDKVEDPQNQLLNP--AVK----GTVNVL 112
F D+ D + + A+ G VFH A+ V VE NP A+K GT NV
Sbjct: 55 FIGDVRDRERLERAMEQHGVDTVFHAAALKHVPLVEY------NPMEAIKTNVLGTENVA 108
Query: 113 TAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK- 171
AA GV++ V+ S+ DK + +K LAEK
Sbjct: 109 EAAIENGVEKFVLIST------------DKA-----------VNPTNV-MGATKRLAEKL 144
Query: 172 --AAWEFAKEKGLDVVVVNPGTVM---GPVIP 198
AA + VV G V+ G VIP
Sbjct: 145 FQAANRESGSGKTRFSVVRFGNVLGSRGSVIP 176
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-08
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 22/151 (14%)
Query: 7 VVCVTGGSGCIGS----WLVSLLLERRYTVHATVKNLSDERETAH--LKALEGADTRLRL 60
V +TGG+G +G WL H + + A + LE + +
Sbjct: 2 TVLITGGTGGLGLALARWLA-----AEGARHLVLVSRRGPAPGAAELVAELEALGAEVTV 56
Query: 61 FQIDLLDYDAIAAAVTGC-------TGVFHLA---SPCIVDKVEDPQ-NQLLNPAVKGTV 109
D+ D DA+AA + GV H A ++++ + ++L P V G
Sbjct: 57 AACDVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAW 116
Query: 110 NVLTAAKALGVKRVVVTSSISSITPSPKWPA 140
N+ + L + V+ SS++ + SP
Sbjct: 117 NLHELTRDLDLGAFVLFSSVAGVLGSPGQAN 147
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-08
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 29/151 (19%)
Query: 7 VVCVTGGSGCIGS----WLVS------LLLERRYTVHATVKNLSDERETAHLKALEGADT 56
+TGG G +G WL +LL R A L LE A
Sbjct: 2 TYLITGGLGGLGRALARWLAERGARRLVLLSRS--------GPDAPGAAALLAELEAAGA 53
Query: 57 RLRLFQIDLLDYDAIAAAVTGC-------TGVFHLA---SPCIVDKVEDPQ-NQLLNPAV 105
R+ + D+ D DA+AA + TGV H A ++ + + +L P
Sbjct: 54 RVTVVACDVADRDALAAVLAAIPAVEGPLTGVIHAAGVLDDGVLASLTPERFAAVLAPKA 113
Query: 106 KGTVNVLTAAKALGVKRVVVTSSISSITPSP 136
G N+ L + V+ SSI+ + SP
Sbjct: 114 AGAWNLHELTADLPLDFFVLFSSIAGVLGSP 144
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 59/226 (26%), Positives = 86/226 (38%), Gaps = 50/226 (22%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE--GADTRLRLFQIDLLD 67
VTGG+G IGS V LL + + NL +L+ LE + R R + D+ D
Sbjct: 5 VTGGAGFIGSNFVRYLLNK--YPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDICD 62
Query: 68 YDAIAAAVT--GCTGVFHLASPCIVDKVEDPQNQLLNPA------VKGTVNVLTAAKALG 119
+ + V H A+ VD + +P V GT +L AA+ G
Sbjct: 63 AELVDRLFEEEKIDAVIHFAAESHVD------RSISDPEPFIRTNVLGTYTLLEAARKYG 116
Query: 120 VKRVVVTSSISSITPSPKWPADKV----KDEDCWTDEE-YCRQNEIWYPLSKTLAEKAAW 174
VKR V IS+ D+V D+ +T+ + Y SK A+
Sbjct: 117 VKRFV---HIST---------DEVYGDLLDDGEFTETSPLAPTSP--YSASKAAADLLVR 162
Query: 175 EFAKEKGLDVVVVNPGTVMGP------VIPPTLNASMLMLLRLLQG 214
+ + GL VV+ GP +IP L +L L G
Sbjct: 163 AYHRTYGLPVVITRCSNNYGPYQFPEKLIP-------LFILNALDG 201
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 52/215 (24%), Positives = 77/215 (35%), Gaps = 64/215 (29%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDL 65
VV +TG S IG L L + Y V AT R L++L + L + ++D+
Sbjct: 2 VVLITGCSSGIGLALALALAAQGYRVIATA------RNPDKLESLGELLNDNLEVLELDV 55
Query: 66 LDYDAIAAAVTGCTGVFH------------LASPCI---VDKVEDPQNQLLNPAVKGTVN 110
D ++I AAV F L P +++V +L V G +
Sbjct: 56 TDEESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVR----ELFEVNVFGPLR 111
Query: 111 VLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK 166
V A + G R+V SS++ + P+P YC
Sbjct: 112 VTRAFLPLMRKQGSGRIVNVSSVAGLVPTPFLGP-------------YC----------- 147
Query: 167 TLAEKAAWEFAKEK--------GLDVVVVNPGTVM 193
A KAA E E G+ V ++ PG V
Sbjct: 148 --ASKAALEALSESLRLELAPFGIKVTIIEPGPVR 180
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|219957 pfam08659, KR, KR domain | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-08
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 10 VTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
VTGG G +G L L ER R+ V + D A L LE + + D+ D
Sbjct: 5 VTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVACDVSD 64
Query: 68 YDAIAAAVTGC-------TGVFHLA-----SPCIVDKVEDPQNQLLNPAVKGTVNVLTAA 115
DA+ A + GV H A + + + + ++L P V G N+ A
Sbjct: 65 RDAVRALLAEIRADGPPLRGVIHAAGVLRDAL-LANMTAEDFARVLAPKVTGAWNLHEAT 123
Query: 116 KALGVKRVVVTSSISSI 132
+ + V+ SSI+ +
Sbjct: 124 RDRPLDFFVLFSSIAGV 140
|
This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 |
| >gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 4e-08
Identities = 41/187 (21%), Positives = 64/187 (34%), Gaps = 30/187 (16%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKN-LSDERETAHLKALEGADTRLRLFQIDLLDY 68
+ G +G GS +V L R + V A V++ E LK ++G D+LD
Sbjct: 4 IIGATGRTGSAIVREALARGHEVTALVRDPAKLPAEHEKLKVVQG----------DVLDL 53
Query: 69 DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128
+ + A+ G V P +GT N+++A KA GVKR++V
Sbjct: 54 EDVKEALEGQDAVISALGT---RNDLSPTTLH----SEGTRNIVSAMKAAGVKRLIVVGG 106
Query: 129 ISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVN 188
S KV + + + +E GLD V
Sbjct: 107 AGS-----LDDRPKVT----LVLDTLLF-PPALRRV--AEDHARMLKVLRESGLDWTAVR 154
Query: 189 PGTVMGP 195
P +
Sbjct: 155 PPALFDG 161
|
Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 9e-08
Identities = 54/201 (26%), Positives = 78/201 (38%), Gaps = 40/201 (19%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS--DERETAHLKALEGADTRLRLFQID- 64
+ +TGG+G +GS L LLE + V V N +R HL + D
Sbjct: 3 ILITGGAGFLGSHLCDRLLEDGHEVIC-VDNFFTGRKRNIEHLI----GHPNFEFIRHDV 57
Query: 65 ----LLDYDAIAAAVTGCTGVFHLASPCI-VDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
L+ D I +HLA P V +P + L V GT+N+L AK +G
Sbjct: 58 TEPLYLEVDQI----------YHLACPASPVHYQYNPI-KTLKTNVLGTLNMLGLAKRVG 106
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC-RQNEI----WYPLSKTLAEKAAW 174
RV++ S+ S + P E E Y N I Y K +AE
Sbjct: 107 A-RVLLAST-SEVYGDP---------EVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCM 155
Query: 175 EFAKEKGLDVVVVNPGTVMGP 195
+ ++ G+DV + GP
Sbjct: 156 AYHRQHGVDVRIARIFNTYGP 176
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 54/195 (27%), Positives = 77/195 (39%), Gaps = 32/195 (16%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
+TGG+G G +S LLE Y + DE + ++ A LR F D+ D +
Sbjct: 9 ITGGTGSFGKAFISRLLEN-YNPKKIIIYSRDELKQWEMQQKFPAP-CLRFFIGDVRDKE 66
Query: 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129
+ A+ G V H A+ V E + + + G NV+ AA GVKRVV S
Sbjct: 67 RLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALS-- 124
Query: 130 SSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK---AAWEFAKEKGLDVVV 186
TD+ N Y +K ++K AA + KG V
Sbjct: 125 --------------------TDKAANPIN--LYGATKLASDKLFVAANNISGSKGTRFSV 162
Query: 187 VNPGTVM---GPVIP 198
V G V+ G V+P
Sbjct: 163 VRYGNVVGSRGSVVP 177
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 48/148 (32%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERET--AHLKALEGADTRLRLFQIDL 65
V VTG +G GSWL LLE + A V S + T + L A F D+
Sbjct: 7 VLVTGHTGFKGSWLSLWLLE----LGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFG-DI 61
Query: 66 LDYDAIAAAVTGCTG--VFHLASPCIVDK-VEDPQNQL-LNPAVKGTVNVLTAAKALGVK 121
D + A+ VFHLA+ +V K DP N V GTVN+L A +A+G
Sbjct: 62 RDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETN--VMGTVNLLEAIRAIGSV 119
Query: 122 RVVVTSSISSITPSPKWPADKVKDEDCW 149
+ VV +T +DK D W
Sbjct: 120 KAVVN-----VT------SDKCYRNDEW 136
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 55/178 (30%), Positives = 72/178 (40%), Gaps = 39/178 (21%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVH------ATVKNLSDERETAHLKALEGADTRLRLF 61
V VTG +G GSWL L E V T NL E A+L D ++
Sbjct: 7 VLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLF---ELANL------DNKISST 57
Query: 62 QIDLLDYDAIAAAVTGCTG--VFHLA-SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL 118
+ D+ D +A+ A+ VFHLA P + +DP V GTVN+L A +
Sbjct: 58 RGDIRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVET-FETNVMGTVNLLEAIRET 116
Query: 119 G-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW-----YPLSKTLAE 170
G VK VV +S DK + W Y R+N+ Y SK AE
Sbjct: 117 GSVKAVVNVTS------------DKCYENKEWG-WGY-RENDPLGGHDPYSSSKGCAE 160
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 15/145 (10%)
Query: 3 KEAEVVCVTGGSGCIGSWLVSLLLER-RYTVHAT---VKNLSDERETAHLKALEGADTRL 58
K V VTGG+G IG L L R + +E + L ALE R+
Sbjct: 203 KPGGVYLVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWKAQTLAALEALGARV 262
Query: 59 RLFQIDLLDYDAIAAAV-------TGCTGVFHLA----SPCIVDKVEDPQNQLLNPAVKG 107
D+ D A+ + GV H A + K + +L P V G
Sbjct: 263 LYISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKTAEDFEAVLAPKVDG 322
Query: 108 TVNVLTAAKALGVKRVVVTSSISSI 132
+N+ A + V+ SS+S+
Sbjct: 323 LLNLAQALADEPLDFFVLFSSVSAF 347
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 26/196 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
VTG G IGS L L + V +D + H+ D +DL +
Sbjct: 3 ALVTGAGGFIGSHLAERLKAEGHYVRG-----ADWKSPEHMTQPTDDD---EFHLVDLRE 54
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
+ A G VFHLA+ D ++ ++ N+L AA+ GV+R
Sbjct: 55 MENCLKATEGVDHVFHLAA----DMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVER 110
Query: 123 VVVTSSISSITPSPKWPADKV---KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE 179
+ SS + + P K V ++ED W E + Y K E+ + ++
Sbjct: 111 FLFASS-ACVYPEFKQLETTVVRLREEDAWPAEP-----QDAYGWEKLATERLCQHYNED 164
Query: 180 KGLDVVVVNPGTVMGP 195
G++ +V + GP
Sbjct: 165 YGIETRIVRFHNIYGP 180
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 6e-07
Identities = 75/350 (21%), Positives = 120/350 (34%), Gaps = 97/350 (27%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ VTG G +GS +V +L RR + + + +DL D
Sbjct: 2 ILVTGHRGLVGSAIV-RVLARRGYENVVFRTSKE---------------------LDLTD 39
Query: 68 YDAIAAAVT--GCTGVFHLASPCIVDKVEDPQNQLLNPA------VKGTVNVLTAAKALG 119
+A+ A V HLA+ KV + PA + NV+ AA G
Sbjct: 40 QEAVRAFFEKEKPDYVIHLAA-----KVGGIVANMTYPADFLRDNLLINDNVIHAAHRFG 94
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE 179
VK++V + S P + + D T Y ++K K + K+
Sbjct: 95 VKKLV---FLGSSCIYPDLAPQPIDESDLLT--GPPEPTNEGYAIAKRAGLKLCEAYRKQ 149
Query: 180 KGLDVVVVNPGTVMGP----------VIPPTLNASMLMLLRLLQGCTDTYENFF--MGS- 226
G D + V P + GP VIP L+R GS
Sbjct: 150 YGCDYISVMPTNLYGPHDNFDPENSHVIPA--------LIRKFHEAKLRGGKEVTVWGSG 201
Query: 227 ------VHFKDVALAHILVYENPS-------ACGRHLCVEAISHYGDFVAKVAELYPEYD 273
++ D+A A + + EN G + + + +AE+
Sbjct: 202 TPRREFLYSDDLARAIVFLLENYDEPIIVNVGSGVEISI------RELAEAIAEVV--GF 253
Query: 274 IPRLPKDTQPGLLRTK-DGA-KKLMD------LG-LQFIPMDQIIKDSVE 314
+ DT +K DG +KL+D LG F P++Q I+++ E
Sbjct: 254 KGEIVFDT------SKPDGQPRKLLDVSKLRALGWFPFTPLEQGIRETYE 297
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 48/129 (37%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 10 VTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL-- 65
VTGG+G IG LVS LL+RR TVH V+ S R L A GAD R+ DL
Sbjct: 5 VTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSR-LEALAAYWGAD-RVVPLVGDLTE 62
Query: 66 ----LDYDAIAAAVTGCTGVFHLASPCIVD-KVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
L +A A + V HLA+ I D ++ + N V GT NV+ A+ L
Sbjct: 63 PGLGLS-EADIAELGDIDHVVHLAA--IYDLTADEEAQRAAN--VDGTRNVVELAERLQA 117
Query: 121 KRVVVTSSI 129
SSI
Sbjct: 118 ATFHHVSSI 126
|
Length = 657 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 7e-07
Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
VTG +G +G +V LL R + V A V R AL G + DL D
Sbjct: 5 VTGATGFVGGAVVRELLARGHEVRAAV------RNPEAAAALAGGVE---VVLGDLRDPK 55
Query: 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129
++ A G GV ++ + D + V V AA A GVK V S +
Sbjct: 56 SLVAGAKGVDGVLLISG------LLDGSDAFRAVQVTAVVRAAEAAGA-GVKHGVSLSVL 108
Query: 130 SSITPSPKWPAD 141
+ SP A
Sbjct: 109 GADAASPSALAR 120
|
Length = 275 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-07
Identities = 47/226 (20%), Positives = 79/226 (34%), Gaps = 45/226 (19%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDER-ETAHLKALEGADTRLRLFQIDLLD- 67
VTG S IG + L V + +E E E R D+ D
Sbjct: 10 VTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDD 69
Query: 68 YDAIAAAV------TG-------CTGVFHLASPCIVDKVEDPQ-NQLLNPAVKGTVNVLT 113
+++ A V G G+ +P ++++ + +++++ + G +
Sbjct: 70 EESVEALVAAAEEEFGRIDILVNNAGIAGPDAP--LEELTEEDWDRVIDVNLLGAFLLTR 127
Query: 114 AAKALGVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----TL 168
AA L K R+V SS++ + P A Y SK L
Sbjct: 128 AALPLMKKQRIVNISSVAGLGGPPGQAA---------------------YAASKAALIGL 166
Query: 169 AEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQG 214
+ A E A +G+ V V PG + P+ +A + L RL
Sbjct: 167 TKALALELAP-RGIRVNAVAPGYIDTPMTAALESAELEALKRLAAR 211
|
Length = 251 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 9e-07
Identities = 49/207 (23%), Positives = 74/207 (35%), Gaps = 44/207 (21%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
VTG S IG + L V +N E A ++AL G Q D+ D
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALAELAAIEALGG---NAVAVQADVSD 57
Query: 68 YDAIAAAVT-------GCTGVFH---LASPCIVDKVEDPQ-NQLLNPAVKGTVNVLTAA- 115
+ + A V + + +A P ++++ D +++L+ + G + AA
Sbjct: 58 EEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAAL 117
Query: 116 ---KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----TL 168
K G R+V SS++ + P P A Y SK L
Sbjct: 118 PHMKKQGGGRIVNISSVAGLRPLPGQAA-------------YA--------ASKAALEGL 156
Query: 169 AEKAAWEFAKEKGLDVVVVNPGTVMGP 195
A E A G+ V V PG V P
Sbjct: 157 TRSLALELAP-YGIRVNAVAPGLVDTP 182
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 46/134 (34%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETA--HLKALEGA-DTR 57
MS + VTGG+G IGS V LL Y V + NL + E A +K L G
Sbjct: 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVV-IDNLDNSSEEALRRVKELAGDLGDN 59
Query: 58 LRLFQIDLLDYDAIAA--AVTGCTGVFHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTA 114
L ++DL D +A+ A T V H A V + V P N V GT+N+L
Sbjct: 60 LVFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLV-GTINLLEV 118
Query: 115 AKALGVKRVVVTSS 128
G K++V +SS
Sbjct: 119 MAKHGCKKLVFSSS 132
|
Length = 352 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 24/116 (20%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
+TG +G +G LV LL ER Y V T ++ R LF++DL D D
Sbjct: 4 ITGATGMLGRALVRLLKERGYEVIGTGRS------------------RASLFKLDLTDPD 45
Query: 70 AIAAAVTGC--TGVFHLASPCIVDKVE-DPQN-QLLNPAVKGTVNVLTAAKALGVK 121
A+ A+ + + A+ VDK E DP+ +N V N+ AAK +G +
Sbjct: 46 AVEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVN--VLAPENLARAAKEVGAR 99
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTG +G +G LV LL+ + V A V++ E+ + R+ + + DL D
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRALVRS--PEKLADRPWS-----ERVTVVRGDLED 53
Query: 68 YDAIAAAVTGCTGVFHLA-SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+++ AA+ G ++L S E+ + N AA+A GVKR++
Sbjct: 54 PESLRAALEGIDTAYYLVHSMGSGGDFEEADRRA-------ARNFARAARAAGVKRIIYL 106
Query: 127 SSIS 130
+
Sbjct: 107 GGLI 110
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 24/154 (15%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
E V VTG + IG + L V ++ + A + +E A + R Q+
Sbjct: 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVV--DICGDDAAATAELVEAAGGKARARQV 62
Query: 64 DLLDYDAIAAAVTG-------------CTGVFHLASPCIVDKVEDPQ-NQLLNPAVKGTV 109
D+ D A+ AAV G+F +++D Q ++++ + GT
Sbjct: 63 DVRDRAALKAAVAAGVEDFGRLDILVANAGIF---PLTPFAEMDDEQWERVIDVNLTGTF 119
Query: 110 NVLTAA----KALGVKRVVVTSSIS-SITPSPKW 138
+ AA G R+V+TSS++ P
Sbjct: 120 LLTQAALPALIRAGGGRIVLTSSVAGPRVGYPGL 153
|
Length = 251 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
VV V G +G IG ++V+ L +R V + + R L + G ++ + DL
Sbjct: 2 VVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYAR---RLL-VMGDLGQVLFVEFDLR 57
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPA-VKGTVNVLTAAKALGVKRVVV 125
D ++I A+ G V +L V ++ + +N V+G + AAK GV+R++
Sbjct: 58 DDESIRKALEGSDVVINL-----VGRLYETKNFSFEDVHVEGPERLAKAAKEAGVERLI- 111
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVV 185
IS++ P+ +Y R SK E+A +E +
Sbjct: 112 --HISALGADANSPS------------KYLR--------SKAEGEEA----VREAFPEAT 145
Query: 186 VVNPGTVMGP 195
+V P V G
Sbjct: 146 IVRPSVVFGR 155
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 60/211 (28%), Positives = 79/211 (37%), Gaps = 53/211 (25%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERR----YTVHATVKNLSD-ERETAHLKALEGADTRLRLF 61
V VTGG G IGS L +L+ L + E + +LR +
Sbjct: 252 TVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP----ELKLRFY 307
Query: 62 QIDLLDYDAIAAAVTG--CTGVFHLASPCIVDKVEDPQNQLLNP--AVK----GTVNVLT 113
D+ D D + A+ G VFH A+ V VE NP A+K GT NV
Sbjct: 308 IGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEY------NPEEAIKTNVLGTENVAE 361
Query: 114 AAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK-- 171
AA GVK+ V+ S+ ++ P+ N +K LAEK
Sbjct: 362 AAIKNGVKKFVLISTDKAVNPT----------------------NV--MGATKRLAEKLF 397
Query: 172 -AAWEFAKEKGLDVVVVNPGTVM---GPVIP 198
AA G VV G V+ G VIP
Sbjct: 398 QAANRNVSGTGTRFCVVRFGNVLGSRGSVIP 428
|
Length = 588 |
| >gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 48/218 (22%), Positives = 76/218 (34%), Gaps = 45/218 (20%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
S + +VV +TGG G +G + L R V + + + L + LR+
Sbjct: 3 HSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP--LSQTLPGV--PADALRI 58
Query: 61 FQIDLLDYDAIAAAVT-------GCTGVFHLA----SPCIVDKVEDPQNQLLNPAVKGTV 109
IDL+D A AV + ++A I D D +++ VK T+
Sbjct: 59 GGIDLVDPQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTL 118
Query: 110 NVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165
N AA A G R+V + +++ P A Y +
Sbjct: 119 NASKAALPALTASGGGRIVNIGAGAALKAGPGMGA---------------------YAAA 157
Query: 166 KT----LAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPP 199
K L E A E ++G+ V V P + P
Sbjct: 158 KAGVARLTEALAAEL-LDRGITVNAVLPSIIDTPPNRA 194
|
Length = 239 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 88/350 (25%), Positives = 127/350 (36%), Gaps = 90/350 (25%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDER-----ETAHLKALEG--ADTRLRL 60
V +TGG+G IGS L+ LLER + V + N + R + +L +EG AD L
Sbjct: 3 VLITGGAGQIGSHLIEHLLERGHQV-VVIDNFATGRREHLPDHPNLTVVEGSIADKALVD 61
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPA--VKGTVNVLTAAKAL 118
DA V H A+ +DP + + V G NV+ AAK
Sbjct: 62 KLFGDFKPDA----------VVHTAA-----AYKDPDDWYEDTLTNVVGGANVVQAAKKA 106
Query: 119 GVKRVV---------VTSSISSIT-PSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTL 168
GVKR++ + I P+ P Y +SKT
Sbjct: 107 GVKRLIYFQTALCYGLKPMQQPIRLDHPRAPPGSS------------------YAISKTA 148
Query: 169 AEKAAWEFAKEKGLDVV------VVNPGTVMGPVIPPTLNASMLMLLRLLQG----CTDT 218
E + + G+D V V P V+GP+ PT RL G TDT
Sbjct: 149 GE----YYLELSGVDFVTFRLANVTGPRNVIGPL--PTF------YQRLKAGKKCFVTDT 196
Query: 219 YENF-FMGS-VHFKDVALAHIL---VYENPSACGRHLCVEAISHYGDFVAKV--AELYPE 271
+F F+ D AL I Y S +I D V + L PE
Sbjct: 197 RRDFVFVKDLARVVDKALDGIRGHGAYHFSSGED-----VSIKELFDAVVEALDLPLRPE 251
Query: 272 YDIPRLPKDTQPGLLRTKDGAKKLMDLG-LQFIPMDQIIKDSVESLKAKG 320
++ L D P +L D ++ D G +F P+ + + ++ G
Sbjct: 252 VEVVELGPDDVPSILL--DPSRTFQDFGWKEFTPLSETVSAALAWYDKHG 299
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 5e-06
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-DERETAHLKALEGADTRLRLFQID 64
+++ +TGG+G G+ ++ L+ T ++ S DE++ ++ + +++L+ + D
Sbjct: 5 KILLITGGTGSFGNAVLRRFLD---TDIKEIRIFSRDEKKQDDMRK-KYNNSKLKFYIGD 60
Query: 65 LLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124
+ DY +I A G ++H A+ V E + + V GT NVL AA A GVKRVV
Sbjct: 61 VRDYRSILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVV 120
Query: 125 VTSSISSITP 134
S+ ++ P
Sbjct: 121 CLSTDKAVYP 130
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 62/261 (23%), Positives = 99/261 (37%), Gaps = 55/261 (21%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTG +G IGS +V L+ + V ++ + A L+A GA ++ + DL D
Sbjct: 3 VFVTGATGFIGSAVVRELVAAGHEVVGLARS---DAGAAKLEAA-GA----QVHRGDLED 54
Query: 68 YDAIAAAVTGCTGVFHLA---------SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL 118
D + A V HLA C VD+ A++ L
Sbjct: 55 LDILRKAAAEADAVIHLAFTHDFDNFAQACEVDR----------RAIEALGEALRGTG-- 102
Query: 119 GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAK 178
K ++ TS I + P+ D+ +D T P ++ ++E AA E A
Sbjct: 103 --KPLIYTSGIWLLGPTGGQEEDEEAPDDPPT------------PAARAVSEAAALELA- 147
Query: 179 EKGLDV-VVVNPGTVMGPVIPPTLNASMLMLLRLLQ-----GCTDTYENFFMGSVHFKDV 232
E+G+ VV P V G + + ML+ + + +N + +VH D
Sbjct: 148 ERGVRASVVRLPPVVHG----RGDHGFVPMLIAIAREKGVSAYVGDGKNRW-PAVHRDDA 202
Query: 233 ALAHILVYENPSACGRHLCVE 253
A + L E A + V
Sbjct: 203 ARLYRLALEKGKAGSVYHAVA 223
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGAD--TRLRLFQIDL 65
+ VTGG+G IGS V LLE + V + NLS +AL + T + + DL
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEV-VILDNLS----NGSREALPRGERITPVTFVEGDL 56
Query: 66 LDYDAIAAAVTG--CTGVFHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
D + + V H A V + V+ P N V GT+N+L A + GVK+
Sbjct: 57 RDRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRN-NVVGTLNLLEAMQQAGVKK 115
Query: 123 VVVTSS 128
+ +SS
Sbjct: 116 FIFSSS 121
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-06
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V +TGG G G L L + VH + ++ ++ EG ++ Q D+ D
Sbjct: 2 VLITGGGGYFGFRLGCALAKS--GVHVILFDIRRPQQELP----EG----IKFIQADVRD 51
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+ AV G VFH+AS + + + + + V+GT N++ V R++ TS
Sbjct: 52 LSQLEKAVAGVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVRRRVPRLIYTS 111
Query: 128 SISSI 132
+ + I
Sbjct: 112 TFNVI 116
|
An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 61/302 (20%), Positives = 100/302 (33%), Gaps = 46/302 (15%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHL-KALEG---------- 53
V +TG +G +G++L+ LL+R+ ++ V+ +E L L+
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 54 --------ADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAV 105
D + DY +A V + H + V+ V P +L V
Sbjct: 61 LSRIKVVVGDLSKPNLGLSDDDYQELAEEV---DVIIHNGA--NVNWV-YPYEELKPANV 114
Query: 106 KGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI-WYPL 164
GT +L A +K + S++S + D++ D + Y
Sbjct: 115 LGTKELLKLAATGKLKPLHFVSTLSVFSA----EEYNALDDEESDDMLESQNGLPNGYIQ 170
Query: 165 SKTLAEKAAWEFAKEKGLDVVVVNPGTVMG-PVIPPTLNASMLMLLRLLQGC--TDTYEN 221
SK +AEK E A +GL V ++ PG + G RLL+GC Y
Sbjct: 171 SKWVAEKLLRE-AANRGLPVAIIRPGNIFGDSETGIGNTDDFFW--RLLKGCLQLGIYPI 227
Query: 222 -----FFMGSVHFKDVALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPR 276
+ L N + L I D + + E Y I
Sbjct: 228 SGAPLDLSPVDWVARAIVKLALNESNEFSIYHLLNPPLI-SLNDLLDALEE--KGYSIKE 284
Query: 277 LP 278
+
Sbjct: 285 VS 286
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
V G SG IG + L R + V ++ S L L G + + D +D
Sbjct: 4 VLGASGPIGREVARELRRRGWDVRLVSRSGS------KLAWLPGVE----IVAADAMDAS 53
Query: 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
++ AA G ++H A+P +L P ++ NV+ AA+A G K V+
Sbjct: 54 SVIAAARGADVIYHCANPAYTR-----WEELFPPLME---NVVAAAEANGAKLVLP 101
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ V G +G G +V L+ + V A V++ E + LKA G + L + DL D
Sbjct: 1 ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKS-LKAA-GVE----LVEGDLDD 54
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124
++++ A+ G VF + + ++ED + AAK GVK +
Sbjct: 55 HESLVEALKGVDVVFSVTGFWLSKEIED------------GKKLADAAKEAGVKHFI 99
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD-ERETAHLKALE-GADTRL 58
M K A +TG +G GS+L LLLE+ Y VH + S HL D RL
Sbjct: 1 MGKVA---LITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRL 57
Query: 59 RLFQIDLLDYDAIAAAV--TGCTGVFHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTAA 115
L DL D + + +++LA+ V E P+ A+ GT+ +L A
Sbjct: 58 HLHYGDLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAI-GTLRLLEAI 116
Query: 116 KALGVKRVVVTSSISS 131
+ LG K+ + +S
Sbjct: 117 RILGEKKTRFYQASTS 132
|
Length = 345 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL 65
+ VTGG+G IGS LV +L+ + ++ + E +LR D+
Sbjct: 4 TILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFIIGDV 63
Query: 66 LDYDAIAAAVT--GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRV 123
D + + A G VFH A+ V +ED + + V GT NV+ AA GV++
Sbjct: 64 RDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIENGVEKF 123
Query: 124 VVTSS 128
V S+
Sbjct: 124 VCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-05
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 17/153 (11%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
MS + + VTG S IG + L V N A L A R+
Sbjct: 1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALA--AELRAAGGEARV 58
Query: 61 FQIDLLDYDAIAAAVT-------GCTGVFHLA---SPCIVDKVEDPQ-NQLLNPAVKGTV 109
D+ D A+ A + + + A ++ ++ + +++++ + GT
Sbjct: 59 LVFDVSDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTF 118
Query: 110 NVLTAA----KALGVKRVVVTSSISSITPSPKW 138
NV+ AA R+V SS+S +T +P
Sbjct: 119 NVVRAALPPMIKARYGRIVNISSVSGVTGNPGQ 151
|
Length = 246 |
| >gnl|CDD|215072 PLN00141, PLN00141, Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 26/136 (19%)
Query: 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERET---------AHLKALEG 53
+ + V V G +G G +V LL + + V A V+++ + + EG
Sbjct: 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEG 74
Query: 54 ADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLT 113
+D +L + D DA+ A TG F +P VD GTVN++
Sbjct: 75 SD---KLVEAIGDDSDAVICA-TGFRRSFDPFAPWKVDNF-------------GTVNLVE 117
Query: 114 AAKALGVKRVVVTSSI 129
A + GV R ++ SSI
Sbjct: 118 ACRKAGVTRFILVSSI 133
|
Length = 251 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 54/226 (23%), Positives = 82/226 (36%), Gaps = 48/226 (21%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVK-------NLSDERETAHLKALEGADTRLRLFQ 62
VTGG+G IGS V +L + H NL +L +E R R Q
Sbjct: 5 VTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNL------ENLADVED-SPRYRFVQ 57
Query: 63 IDLLDYDAIAAAVTGCT--GVFHLASPCIVDK-VEDPQNQLLNPAVKGTVNVLTAAKALG 119
D+ D + + V H A+ VD+ ++ P + V GT +L AA+
Sbjct: 58 GDICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAP-FIQTNVVGTYTLLEAARKYW 116
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWE---- 175
K IS+ D+V + D+ + + P S A KAA +
Sbjct: 117 GKFRFH--HIST---------DEVYGDLGLDDDAFTETTP-YNPSSPYSASKAASDLLVR 164
Query: 176 -FAKEKGLDVVVVNPGTVMGP------VIPPTLNASMLMLLRLLQG 214
+ + GL + GP +IP LM++ L G
Sbjct: 165 AYVRTYGLPATITRCSNNYGPYQFPEKLIP-------LMIINALLG 203
|
Length = 340 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERETAHLKALEGADTRLRLFQIDL 65
V VTG + IG V LL V+A V++ AHL A G ++ ++D+
Sbjct: 5 TVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPG---SAAHLVAKYGD--KVVPLRLDV 59
Query: 66 LDYDAIAAAVTGCT---------GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-- 114
D ++I AA GV A+ + + + Q ++ V G + + A
Sbjct: 60 TDPESIKAAAAQAKDVDVVINNAGVLKPATL-LEEGALEALKQEMDVNVFGLLRLAQAFA 118
Query: 115 --AKALGVKRVVVTSSISSI 132
KA G +V +S++S+
Sbjct: 119 PVLKANGGGAIVNLNSVASL 138
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 54/217 (24%), Positives = 74/217 (34%), Gaps = 69/217 (31%)
Query: 10 VTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD- 67
+TG S IG LV LL R TV AT ++ S E L AL + +RL + ++D+ D
Sbjct: 3 ITGASRGIGLELVRQLLARGNNTVIATCRDPSAATE---LAALGASHSRLHILELDVTDE 59
Query: 68 YDAIAAAVTG------------CTGVFHLASPCIVDKV--EDPQNQLLNPAVKGTVNVLT 113
A AV G+ H S +V ED VNVL
Sbjct: 60 IAESAEAVAERLGDAGLDVLINNAGILH--SYGPASEVDSEDLLEVF-------QVNVLG 110
Query: 114 ---AAKAL------GVKRVVVT-----SSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159
+A G + ++ SI T +
Sbjct: 111 PLLLTQAFLPLLLKGARAKIINISSRVGSIGDNTSGGWYS-------------------- 150
Query: 160 IWYPLSKT----LAEKAAWEFAKEKGLDVVVVNPGTV 192
Y SK L + A E K G+ VV ++PG V
Sbjct: 151 --YRASKAALNMLTKSLAVEL-KRDGITVVSLHPGWV 184
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 44/190 (23%), Positives = 62/190 (32%), Gaps = 22/190 (11%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V +TG SG +G L LL + + A R+ DL
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNER--LILIDVVSPKA-----PSGAPRVTQIAGDLA 54
Query: 67 DYDAIAAAVTG-CTGVFHLASPCIVD-KVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRV 123
I A G VFHLA IV E + V GT N+L A + G R
Sbjct: 55 VPALIEALANGRPDVVFHLA--AIVSGGAEADFDLGYRVNVDGTRNLLEALRKNGPKPRF 112
Query: 124 VVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLD 183
V TSS++ P D + Y K + E ++++ +D
Sbjct: 113 VFTSSLAVYGLPLPNPVTDHTALDPASS----------YGAQKAMCELLLNDYSRRGFVD 162
Query: 184 VVVVNPGTVM 193
+ TV
Sbjct: 163 GRTLRLPTVC 172
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 25/195 (12%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+C+TG G I S + L + + A SD ++ H+ +DL
Sbjct: 24 ICITGAGGFIASHIARRLKAEGHYIIA-----SDWKKNEHMSEDMFCH---EFHLVDLRV 75
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
+ G VF+LA+ D ++ + ++ + N+L AA+ GVKR
Sbjct: 76 MENCLKVTKGVDHVFNLAA----DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR 131
Query: 123 VVVTSSISSITPSPKWPADKV--KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK 180
SS + I P K V K+ D W E Q+ Y L K E+ + K+
Sbjct: 132 FFYASS-ACIYPEFKQLETNVSLKESDAWPAEP---QDA--YGLEKLATEELCKHYTKDF 185
Query: 181 GLDVVVVNPGTVMGP 195
G++ + + GP
Sbjct: 186 GIECRIGRFHNIYGP 200
|
Length = 370 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERET----AHLKALEGADTRLRLFQI 63
+ VTG +G IG + LLER V + NL+D + A L+ L G + +
Sbjct: 3 ILVTGAAGFIGFHVAKRLLERGDEV-VGIDNLNDYYDVRLKEARLELL-GKSGGFKFVKG 60
Query: 64 DLLDYDAI--AAAVTGCTGVFHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
DL D +A+ V HLA+ V +E+P + + V G +N+L + GV
Sbjct: 61 DLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIV-GFLNLLELCRHFGV 119
Query: 121 KRVVVTSSISSI 132
K +V SS SS+
Sbjct: 120 KHLVYASS-SSV 130
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|235630 PRK05865, PRK05865, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ VTG SG +G L + LL + + V ++ D ++ AD D+ D
Sbjct: 3 IAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSS-------AD----FIAADIRD 51
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
A+ +A+TG V H A V + + + GT NVL A G R+V TS
Sbjct: 52 ATAVESAMTGADVVAHCAW------VRGRNDHI---NIDGTANVLKAMAETGTGRIVFTS 102
Query: 128 S 128
S
Sbjct: 103 S 103
|
Length = 854 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERE-TAHLKALEGADTRLRLFQIDLL 66
+ +TGG G IGS L LL + RY + SD R+ AH+ + +D+L
Sbjct: 2 ILITGGLGQIGSELAKLLRK-RYGKDNVI--ASDIRKPPAHVVLSGPFEY------LDVL 52
Query: 67 DYDAIAAAVT--GCTGVFHLASPCIVDKVEDPQNQL---LNPAVKGTVNVLTAAKALGVK 121
D+ ++ V T + HLA+ ++ V + L +N + G NVL A+ +
Sbjct: 53 DFKSLEEIVVNHKITWIIHLAA--LLSAVGEKNPPLAWDVN--MNGLHNVLELAREHNL- 107
Query: 122 RVVVTSSISSITPSPKWPADKVKD 145
R+ V S+I + P+ P + D
Sbjct: 108 RIFVPSTIGAFGPTT--PRNNTPD 129
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 29/143 (20%)
Query: 10 VTGGSGCIG----SWLVS------LLLERRYTVHATVKNLSDERETAHLKALEGADTRLR 59
+TGG G +G WL + +LL RR R A L R+
Sbjct: 155 ITGGLGGLGLLVARWLAARGARHLVLLSRR---------GPAPRAAARAALLRAGGARVS 205
Query: 60 LFQIDLLDYDAIAA------AVTGCTGVFHLASPCIVDKVEDPQ----NQLLNPAVKGTV 109
+ + D+ D A+AA A GV H A + + +L V G +
Sbjct: 206 VVRCDVTDPAALAALLAELAAGGPLAGVIHAAGVLRDALLAELTPAAFAAVLAAKVAGAL 265
Query: 110 NVLTAAKALGVKRVVVTSSISSI 132
N+ L + V+ SS++++
Sbjct: 266 NLHELTPDLPLDFFVLFSSVAAL 288
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKA-LEGADTRLR 59
S V VTG + +G + L V V SDE L +E R +
Sbjct: 2 GSLMGRVALVTGAARGLGRAIALRLARAGADV--VVHYRSDEEAAEELVEAVEALGRRAQ 59
Query: 60 LFQIDLLDYDAIAAAVT 76
Q D+ D A+ AAV
Sbjct: 60 AVQADVTDKAALEAAVA 76
|
Length = 249 |
| >gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+TG S IG+ + L +T+ R L L F +DL
Sbjct: 5 TALITGASRGIGAAIARELA-PTHTLLLG------GRPAERLDELAAELPGATPFPVDLT 57
Query: 67 DYDAIAAAVTG 77
D +AIAAAV
Sbjct: 58 DPEAIAAAVEQ 68
|
Length = 227 |
| >gnl|CDD|187651 cd08947, NmrA_TMR_like_SDR_a, NmrA (a transcriptional regulator), HSCARG (an NADPH sensor), and triphenylmethane reductase (TMR) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.001
Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 25/151 (16%)
Query: 8 VCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+ VTG +G G ++ LL + V A V+N+ KA AD + + Q D
Sbjct: 1 IAVTGATGQQGGSVIRHLLAKGASQVRAVVRNVE--------KAATLADQGVEVRQGDYN 52
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+ + A G + +F + P D +K NV AA+ GVK + T
Sbjct: 53 QPELLQKAFAGASKLFIITGP-----HYDNTL-----EIKQGKNVADAARRAGVKHIYST 102
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQ 157
+ + K+ E R
Sbjct: 103 GYAFAEESAIPLAHVKL------AVEYAIRT 127
|
Atypical SDRs belonging to this subgroup include NmrA, HSCARG, and TMR, these proteins bind NAD(P) but they lack the usual catalytic residues of the SDRs. Atypical SDRs are distinct from classical SDRs. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. TMR, an NADP-binding protein, lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 224 |
| >gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA 54
+ E V VTG +G +GS V++L + YTV A E + +LK+L GA
Sbjct: 143 QTPEDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGK---EEQADYLKSL-GA 192
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|187658 cd08955, KR_2_FAS_SDR_x, beta-ketoacyl reductase (KR) domain of fatty acid synthase (FAS), subgroup 2, complex (x) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 32/149 (21%)
Query: 10 VTGGSGCIG----SWLVSL------LLERRYTVHATVKNLSDERETAHLKALEGADTRLR 59
+TGG G +G WLV L RR + ALE A +
Sbjct: 154 ITGGLGGLGLLVAEWLVERGARHLVLTGRRAP---------SAAARQAIAALEEAGAEVV 204
Query: 60 LFQIDLLDYDAIAAAV----TGC---TGVFHLASPCIVDKVEDPQN-----QLLNPAVKG 107
+ D+ D DA+AAA+ GV H A + D V Q+ ++L P V+G
Sbjct: 205 VLAADVSDRDALAAALAQIRASLPPLRGVIHAAG-VLDDGVLANQDWERFRKVLAPKVQG 263
Query: 108 TVNVLTAAKALGVKRVVVTSSISSITPSP 136
N+ + L + V+ SS++S+ SP
Sbjct: 264 AWNLHQLTQDLPLDFFVLFSSVASLLGSP 292
|
Ketoreductase, a module of the multidomain polyketide synthase, has 2 subdomains, each corresponding to a short-chain dehydrogenases/reductase (SDR) family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerizes but is composed of 2 subdomains, each resembling an SDR monomer. In some instances, as in porcine FAS, an enoyl reductase (a Rossman fold NAD binding domain of the MDR family) module is inserted between the sub-domains. The active site resembles that of typical SDRs, except that the usual positions of the catalytic asparagine and tyrosine are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular polyketide synthases are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) fatty acid synthase. In some instances, such as porcine FAS , an enoyl reductase module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consists of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthesis uses dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-ketoacyl reductase (KR), forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-enoyl reductase (ER). Polyketide syntheses also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes the KR domain of the Lyngbya majuscule Jam J, -K, and #L which are encoded on the jam gene cluster and are involved in the synthesis of the Jamaicamides (neurotoxins); Lyngbya majuscule Jam P belongs to a different KR_FAS_SDR_x subfamily. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 376 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 53/229 (23%), Positives = 78/229 (34%), Gaps = 55/229 (24%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLD 67
VTGG+G IGS V +L A V L +L+ L + R R + D+ D
Sbjct: 4 VTGGAGFIGSNFVRYIL--NEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGD 61
Query: 68 YDAIAAAVT--GCTGVFHLASPCIVDKVEDPQNQLLNPA------VKGTVNVLTAAKALG 119
+ ++ T V H A+ VD + PA V GT +L A +
Sbjct: 62 RELVSRLFTEHQPDAVVHFAAESHVD------RSISGPAAFIETNVVGTYTLLEAVRKYW 115
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDE---DCWTDEEYCRQNEIWYPLSKTLAEKAAWE- 175
+ IS+ DE D + + P S A KAA +
Sbjct: 116 HEFRFH--HIST-------------DEVYGDLEKGDAFTETTP-LAPSSPYSASKAASDH 159
Query: 176 ----FAKEKGLDVVVVNPGTVMGP------VIPPTLNASMLMLLRLLQG 214
+ + GL ++ GP +IP LM+ L G
Sbjct: 160 LVRAYHRTYGLPALITRCSNNYGPYQFPEKLIP-------LMITNALAG 201
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ +TGG+G IG L L +R + V ++ T EG L
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTILTRSPPPGANTKW----EGYKPWAGEDADSLEG 56
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQ--LLNPAVKGTVNVLTAAKALGVK-RVV 124
DA V +LA I DK + + + + + T ++ A A K +V
Sbjct: 57 ADA----------VINLAGEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAAAEQKPKVF 106
Query: 125 VTSS 128
+++S
Sbjct: 107 ISAS 110
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLR 59
M + +VV VTG + IG V LL R V+A ++ ++ R+
Sbjct: 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE---------SVTDLGPRVV 52
Query: 60 LFQIDLLDYDAIAAAVTGCT---------GVFHLASP 87
Q+D+ D ++AAA + G+F S
Sbjct: 53 PLQLDVTDPASVAAAAEAASDVTILVNNAGIFRTGSL 89
|
Length = 238 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 33/228 (14%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDE------RETAHLKALEGADT--- 56
V +TG +G +G++L+ LL R V V+ S+E RE L D
Sbjct: 2 VLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWHEDLARE 61
Query: 57 RLR---------LFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKG 107
R+ + +++ +A V + H + +V+ V P ++L V G
Sbjct: 62 RIEVVAGDLSEPRLGLSDAEWERLAENV-DT--IVHNGA--LVNWVY-PYSELRGANVLG 115
Query: 108 TVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKT 167
T VL A + K + S+IS + + +D+ T Y SK
Sbjct: 116 TREVLRLAASGRAKPLHYVSTIS--VGAAIDLSTVTEDDA--TVTPP-PGLAGGYAQSKW 170
Query: 168 LAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC 215
+AE E A ++GL V +V PG ++G +N+S +L R+++GC
Sbjct: 171 VAELLVRE-ASDRGLPVTIVRPGRILGNSYTGAINSSD-ILWRMVKGC 216
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTG S IG + L Y V ++N L AL + + D
Sbjct: 2 VALVTGASRGIGIEIARALARDGYRVSLGLRNPE------DLAALSASGGDVEAVPYDAR 55
Query: 67 DYDAIAAAV 75
D + A V
Sbjct: 56 DPEDARALV 64
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 48/202 (23%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATV------KNLSDERETAHLKALEGADTRLRL 60
+ +TGG+G IG L L + V V K L L
Sbjct: 1 KIVITGGTGFIGRALTRRLTAAGHEV--VVLSRRPGKAEGLAEVI-TWDGLSLGPWEL-- 55
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDK--VEDPQNQLLNPAVKGTVNVLTAAKAL 118
G V +LA I + E + ++L+ ++ T ++ A
Sbjct: 56 ---------------PGADAVINLAGEPIACRRWTEANKKEILSSRIESTRVLVEAIANA 100
Query: 119 GVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEY----CRQNEIWYPLSKTLAEKAA 173
+V++++S D+V E+ + +++ C+ W EKAA
Sbjct: 101 PAPPKVLISASAVGYYGHSG---DEVLTENSPSGKDFLAEVCKA---W--------EKAA 146
Query: 174 WEFAKEKGLDVVVVNPGTVMGP 195
+ A E G VV++ G V+GP
Sbjct: 147 -QPASELGTRVVILRTGVVLGP 167
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.004
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 19/142 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD---------ERETAHLKALEGADTRL 58
V VTGGSG IGS LL+ + V + NL + ER D R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDV-VILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 59 RLFQIDLLDYDAIAAAVTGCTGVFHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTAAKA 117
++L AI V H A V + V+ P N V GT+ +++A +A
Sbjct: 62 EALLTEILHDHAIDT-------VIHFAGLKAVGESVQKPLEYYDN-NVNGTLRLISAMRA 113
Query: 118 LGVKRVVVTSSISSITPSPKWP 139
VK ++ +SS + PK P
Sbjct: 114 ANVKNLIFSSSATVYGDQPKIP 135
|
Length = 338 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 100.0 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.98 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.98 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.97 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.96 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.96 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.96 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.95 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.95 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.95 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.94 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.94 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.94 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.94 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.94 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.94 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.93 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.93 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.93 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.93 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.93 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.93 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.93 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.93 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.93 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.93 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.93 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.93 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.93 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.93 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.92 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.92 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.92 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.92 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.92 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.92 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.92 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.92 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.92 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.92 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.92 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.92 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.92 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.92 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.91 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.91 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.91 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.91 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.91 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.91 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.91 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.91 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.91 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.91 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.91 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.91 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.91 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.91 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.91 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.9 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.9 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.9 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.9 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.9 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.9 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.9 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.9 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.9 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.9 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.9 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.9 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.9 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.9 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.9 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.9 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.89 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.89 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.89 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.89 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.89 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.89 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.89 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.89 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.88 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.88 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.88 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.88 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.88 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.88 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.87 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.87 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.87 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.87 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.87 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.87 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.87 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.87 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.86 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.86 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.86 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.85 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.85 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.85 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.85 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.85 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.84 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.84 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.84 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.84 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.83 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.83 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.82 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.82 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.82 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.82 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.82 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.81 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.81 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.81 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.81 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.8 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.79 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.79 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.79 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.79 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.77 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.76 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.76 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.76 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.75 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.71 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.71 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.69 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.69 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.69 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.69 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.68 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.68 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.68 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.67 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.66 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.64 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.55 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.54 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.51 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.5 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.47 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.46 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.44 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.3 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.18 | |
| PLN00106 | 323 | malate dehydrogenase | 99.15 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.13 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.98 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.97 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.97 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.91 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.87 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.79 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.72 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.61 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.56 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.56 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.53 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.49 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.45 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.42 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.38 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.32 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.26 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.25 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.25 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.21 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.14 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 98.07 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.05 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 98.03 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 98.0 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.97 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.95 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.9 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.89 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.87 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.83 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.81 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.81 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.78 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.77 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.77 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.75 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.75 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.74 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.73 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.72 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.71 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.67 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.65 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.65 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.64 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.63 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.62 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.61 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.59 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.56 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.55 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.53 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.53 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.53 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.53 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.52 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.51 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.5 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.5 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.46 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.45 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.43 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.42 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.4 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.39 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.39 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.36 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.36 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.36 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.35 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.34 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.33 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.33 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.32 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.29 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.28 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.28 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.24 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.23 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.22 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.21 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.2 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 97.19 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.17 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 97.16 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 97.14 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.13 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.13 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.12 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.11 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.1 | |
| PRK08223 | 287 | hypothetical protein; Validated | 97.1 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 97.08 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 97.04 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 97.01 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.99 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.99 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.98 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.94 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.93 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.93 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.91 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.9 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.89 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.89 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 96.88 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.86 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.86 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.85 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.85 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.84 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.84 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.83 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.83 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.8 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 96.8 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.8 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.8 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 96.8 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.79 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.78 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 96.77 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.76 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.76 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 96.76 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.75 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 96.75 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.74 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 96.74 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.73 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.72 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.72 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 96.72 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.72 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.7 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.7 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.68 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.68 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.68 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.67 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.66 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.66 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 96.65 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.65 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.64 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.63 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.62 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.62 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.61 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 96.6 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.58 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.55 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.55 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 96.55 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.54 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.52 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.51 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 96.51 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.49 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.48 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.47 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.47 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.46 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 96.45 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.44 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 96.43 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.43 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.42 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.42 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.41 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.4 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.39 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.35 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.35 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 96.34 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.34 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.34 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 96.33 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 96.32 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 96.31 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.3 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 96.27 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.26 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.26 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.26 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.25 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.25 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.24 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.24 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 96.24 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 96.23 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 96.23 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 96.2 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.17 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.17 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.15 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 96.14 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 96.09 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.08 |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-54 Score=360.02 Aligned_cols=319 Identities=49% Similarity=0.853 Sum_probs=283.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+++|+|||||||||++++++|+++||.|+++.|++.+....+.+.+++....+...+.+|+.|++++.+++++||+|||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 57899999999999999999999999999999999988777778888887777899999999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCC-CCCCCCccccCCCCCChhhhccCCCc
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPS-PKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
+|.+..+.... +..+.++..+.|+.|++++|++.. ++|+|++||++++..+ ..+..+..++|+.|.++.++.....+
T Consensus 85 ~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~ 163 (327)
T KOG1502|consen 85 TASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLW 163 (327)
T ss_pred eCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHHH
Confidence 99987663333 455899999999999999999988 9999999999998876 33445789999999999999888899
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhc
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
|..||..+|+.++.++.+.+++.+.+.|+.|+||...+..+.....+.++.+|....+.+..+.|||++|+|.|++.+++
T Consensus 164 Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E 243 (327)
T KOG1502|consen 164 YALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNFWLAFVDVRDVALAHVLALE 243 (327)
T ss_pred HHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCCceeeEeHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999887666667788889999877777777779999999999999999
Q ss_pred CCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCC-CCCCccccccchhHhhhC-CcccCHHHHHHHHHHHHHHc
Q 020608 242 NPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDT-QPGLLRTKDGAKKLMDLG-LQFIPMDQIIKDSVESLKAK 319 (323)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG-~~~~~~~~~l~~~~~~~~~~ 319 (323)
.+.+.|+|+|.++..++.|+++.+.+.+|.+.+|...... ......+.+|++|+++|| |+++++++.+.++++++++.
T Consensus 244 ~~~a~GRyic~~~~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~~~l~e~~~dt~~sl~~~ 323 (327)
T KOG1502|consen 244 KPSAKGRYICVGEVVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSEKLKSLGGFKFRPLEETLSDTVESLREK 323 (327)
T ss_pred CcccCceEEEecCcccHHHHHHHHHHhCCCCCCCCCCCccccccccccccccHHHHhcccceecChHHHHHHHHHHHHHh
Confidence 9999999999998888999999999999988877655544 233344578999998887 77799999999999999999
Q ss_pred CCCC
Q 020608 320 GFIS 323 (323)
Q Consensus 320 ~~~~ 323 (323)
+++.
T Consensus 324 ~~l~ 327 (327)
T KOG1502|consen 324 GLLL 327 (327)
T ss_pred cCCC
Confidence 9863
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=356.42 Aligned_cols=315 Identities=47% Similarity=0.798 Sum_probs=246.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
.++|+|||||||||||++|+++|+++|++|+++.|+.+.... .....+.....+++++.+|++|.+++.++++++|+||
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKN-THLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhH-HHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 467899999999999999999999999999999997643221 1122222212368889999999999999999999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+|+.. ..++...+++|+.++.+++++|++.++++||++||.+++|+.....+..+++|+++.....+..+.++|
T Consensus 87 h~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y 161 (342)
T PLN02214 87 HTASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY 161 (342)
T ss_pred EecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHH
Confidence 999863 245678899999999999999999999999999998667754321112458888764433333455789
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
+.+|.++|.+++.++++++++++++||++||||+...........+.....|.....+++.++|||++|+|++++.++++
T Consensus 162 ~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al~~ 241 (342)
T PLN02214 162 CYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEA 241 (342)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccCCCCCcCeeEHHHHHHHHHHHHhC
Confidence 99999999999999888899999999999999986533222222233445666555666778899999999999999998
Q ss_pred CCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCC-CCCCCCccccccchhHhhhCCcccCHHHHHHHHHHHHHHcCC
Q 020608 243 PSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPK-DTQPGLLRTKDGAKKLMDLGLQFIPMDQIIKDSVESLKAKGF 321 (323)
Q Consensus 243 ~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lG~~~~~~~~~l~~~~~~~~~~~~ 321 (323)
+..++.||++++..+++|+++.+.+.+|...++.... ...+......+|++|+++|||+|++++|+|+++++|+++++.
T Consensus 242 ~~~~g~yn~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~LG~~p~~lee~i~~~~~~~~~~~~ 321 (342)
T PLN02214 242 PSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGLEFTSTKQSLYDTVKSLQEKGH 321 (342)
T ss_pred cccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHHHHcCCcccCHHHHHHHHHHHHHHcCC
Confidence 7667789988778899999999999997655443322 122333455789999977999999999999999999999987
Q ss_pred CC
Q 020608 322 IS 323 (323)
Q Consensus 322 ~~ 323 (323)
++
T Consensus 322 ~~ 323 (342)
T PLN02214 322 LA 323 (342)
T ss_pred CC
Confidence 63
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-51 Score=331.73 Aligned_cols=294 Identities=22% Similarity=0.216 Sum_probs=240.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
|+||||||+||||||.|.+|++.|++|++++.-.... .+.+... ...++++|+.|.+.+.+.|+ ++|.|||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~--~~~v~~~-----~~~f~~gDi~D~~~L~~vf~~~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGH--KIALLKL-----QFKFYEGDLLDRALLTAVFEENKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCC--HHHhhhc-----cCceEEeccccHHHHHHHHHhcCCCEEEE
Confidence 6899999999999999999999999999998654221 1222211 15889999999999999998 6899999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+||...++.+-..|.++++.|+.||++|++++++.++++|||.||+ ++|+.+. ..|++|+.++.|. |+||
T Consensus 74 FAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStA-avYG~p~---~~PI~E~~~~~p~------NPYG 143 (329)
T COG1087 74 FAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTA-AVYGEPT---TSPISETSPLAPI------NPYG 143 (329)
T ss_pred CccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecch-hhcCCCC---CcccCCCCCCCCC------Ccch
Confidence 9999999999999999999999999999999999999999999998 7777765 6799999998876 8899
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC-------CCCchhHHHHHHHHcCCCC-----------CccCcCCC
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP-------PTLNASMLMLLRLLQGCTD-----------TYENFFMG 225 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~-------~~~~~~~~~~~~~~~g~~~-----------~~~~~~~~ 225 (323)
.||++.|++++.++..++++++++|.+++-|.... .........+.....|+.. ..|...++
T Consensus 144 ~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRD 223 (329)
T COG1087 144 RSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRD 223 (329)
T ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeee
Confidence 99999999999999999999999999999996432 1112222233333344322 13334678
Q ss_pred cccHHHHHHHHHHhhcCCCCC---ccEEE-EcCccCHHHHHHHHHHHCCCCCCCC-CCCCCCCCCccccccchhH-hhhC
Q 020608 226 SVHFKDVALAHILVYENPSAC---GRHLC-VEAISHYGDFVAKVAELYPEYDIPR-LPKDTQPGLLRTKDGAKKL-MDLG 299 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~~~---~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~lG 299 (323)
||||.|+|++.+.+++.-..+ ..||+ ++..+|+.|+++.+.+..|. ++|. ..++++.++..++.|++|+ ++||
T Consensus 224 YIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~-~ip~~~~~RR~GDpa~l~Ad~~kA~~~Lg 302 (329)
T COG1087 224 YIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGR-DIPVEIAPRRAGDPAILVADSSKARQILG 302 (329)
T ss_pred eeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCC-cCceeeCCCCCCCCceeEeCHHHHHHHhC
Confidence 999999999999998753332 35897 48899999999999999974 4454 3455666777899999999 8999
Q ss_pred Ccc-c-CHHHHHHHHHHHHH
Q 020608 300 LQF-I-PMDQIIKDSVESLK 317 (323)
Q Consensus 300 ~~~-~-~~~~~l~~~~~~~~ 317 (323)
|+| + ++++.++..++|..
T Consensus 303 w~p~~~~L~~ii~~aw~W~~ 322 (329)
T COG1087 303 WQPTYDDLEDIIKDAWDWHQ 322 (329)
T ss_pred CCcccCCHHHHHHHHHHHhh
Confidence 999 6 99999999999998
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=328.14 Aligned_cols=304 Identities=21% Similarity=0.180 Sum_probs=257.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 81 (323)
|++|||||+||||+++++.++++. .+|++++.-- =+...+.+..+.+ .+++.|+++||+|.+.+.++++ ++|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLT-YAgn~~~l~~~~~-~~~~~fv~~DI~D~~~v~~~~~~~~~D~V 78 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLT-YAGNLENLADVED-SPRYRFVQGDICDRELVDRLFKEYQPDAV 78 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEeccc-ccCCHHHHHhhhc-CCCceEEeccccCHHHHHHHHHhcCCCeE
Confidence 689999999999999999999885 4577776432 1222233333332 4689999999999999999999 68999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
+|+|+-++++.+-..+...+++|+.||.+|+++++++..+ ||+++||. .+|+..... +..++|+++.+|. +
T Consensus 79 vhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTD-EVYG~l~~~-~~~FtE~tp~~Ps------S 150 (340)
T COG1088 79 VHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTD-EVYGDLGLD-DDAFTETTPYNPS------S 150 (340)
T ss_pred EEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccc-cccccccCC-CCCcccCCCCCCC------C
Confidence 9999999999999999999999999999999999999854 99999999 777765421 2368999999887 8
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCc--CCCcccHHHHHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENF--FMGSVHFKDVALAHI 237 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~--~~~~i~v~D~a~~~~ 237 (323)
+|++||++++.++++|.+.+|+++++.|+++-|||.+.+ ....+.++..+..|++++ +|++ .++|+||+|-|+|+.
T Consensus 151 PYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfp-EKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~ 229 (340)
T COG1088 151 PYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFP-EKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAID 229 (340)
T ss_pred CcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCc-hhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHH
Confidence 899999999999999999999999999999999998764 455666778888898877 5554 677999999999999
Q ss_pred HhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC-----CCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHH
Q 020608 238 LVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD-----IPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQII 309 (323)
Q Consensus 238 ~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l 309 (323)
.++++...+..||++ +...+..|+++.|++.++... +.....+++....++.+|.+|+ ++|||.| .+|++||
T Consensus 230 ~Vl~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~Gl 309 (340)
T COG1088 230 LVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETFETGL 309 (340)
T ss_pred HHHhcCcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCcCCCHHHHH
Confidence 999998887779986 567899999999999997643 2445566777788899999999 9999999 9999999
Q ss_pred HHHHHHHHHcC
Q 020608 310 KDSVESLKAKG 320 (323)
Q Consensus 310 ~~~~~~~~~~~ 320 (323)
+++++||.+|.
T Consensus 310 rkTv~WY~~N~ 320 (340)
T COG1088 310 RKTVDWYLDNE 320 (340)
T ss_pred HHHHHHHHhch
Confidence 99999999874
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=349.24 Aligned_cols=317 Identities=47% Similarity=0.779 Sum_probs=246.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+|||||||||||++|+++|+++|++|+++.|+.........+.......++++++.+|++|++.+.++++++|+|||
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 46899999999999999999999999999999997654332222222211134789999999999999999999999999
Q ss_pred cccCCccCCCCCch-hhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccc-cCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 84 LASPCIVDKVEDPQ-NQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSI-TPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 84 ~a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
+|+.... ...++ ...+++|+.++.+++++|++. ++++||++||.+++ |+........+++|+.+..|.++....+
T Consensus 83 ~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~ 160 (322)
T PLN02662 83 TASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKL 160 (322)
T ss_pred eCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcccc
Confidence 9987532 22233 378899999999999999887 78999999998653 4322111134688888776654444456
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhh
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~ 240 (323)
+|+.+|..+|.+++.++++++++++++||+++|||............+..+..|.+ ..+++.++|||++|+|++++.++
T Consensus 161 ~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~a~~~~~ 239 (322)
T PLN02662 161 WYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQ-TFPNASYRWVDVRDVANAHIQAF 239 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCc-cCCCCCcCeEEHHHHHHHHHHHh
Confidence 79999999999999998888999999999999999865432333334455555543 34566788999999999999999
Q ss_pred cCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcccCHHHHHHHHHHHHHHcC
Q 020608 241 ENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFIPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~l~~~~~~~~~~~ 320 (323)
+.+...+.||+++..++++|+++.+.+.++...++..............+|++|+++|||++++++++|+++++|+++++
T Consensus 240 ~~~~~~~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~~~~~~~~l~~~~~~~~~~~ 319 (322)
T PLN02662 240 EIPSASGRYCLVERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEKAKSLGIEFIPLEVSLKDTVESLKEKG 319 (322)
T ss_pred cCcCcCCcEEEeCCCCCHHHHHHHHHHHCCCCCCCCCCCCccccccccccChHHHHHhCCccccHHHHHHHHHHHHHHcC
Confidence 98766678998888899999999999998765544433222233445679999997799999899999999999999999
Q ss_pred CCC
Q 020608 321 FIS 323 (323)
Q Consensus 321 ~~~ 323 (323)
+++
T Consensus 320 ~~~ 322 (322)
T PLN02662 320 FLS 322 (322)
T ss_pred CCC
Confidence 864
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=347.98 Aligned_cols=320 Identities=44% Similarity=0.760 Sum_probs=246.0
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|+..+|+|||||||||||++++++|+++|++|+++.|+..+...............+++++.+|++|.+.+.++++++|+
T Consensus 1 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (322)
T PLN02986 1 MNGGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDA 80 (322)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCE
Confidence 66678999999999999999999999999999999998754433222222111124689999999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccc-cCCCCCCCCccccCCCCCChhhhccC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSI-TPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
|||+|+.... ...++....+++|+.++.+++++|++. ++++||++||.+++ ++......+.+++|+++..|..+..+
T Consensus 81 vih~A~~~~~-~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 159 (322)
T PLN02986 81 VFHTASPVFF-TVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRET 159 (322)
T ss_pred EEEeCCCcCC-CCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhcc
Confidence 9999997432 112333457899999999999999885 68999999998664 33221111346888887766544445
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHIL 238 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~ 238 (323)
.++|+.+|.++|.+++.+.++++++++++||+++|||............+..+..|.+. .+.+.++|||++|+|++++.
T Consensus 160 ~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~v~v~Dva~a~~~ 238 (322)
T PLN02986 160 KNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL-FNNRFYRFVDVRDVALAHIK 238 (322)
T ss_pred ccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC-CCCcCcceeEHHHHHHHHHH
Confidence 57899999999999999998889999999999999997654322233445556666643 45556789999999999999
Q ss_pred hhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcccCHHHHHHHHHHHHHH
Q 020608 239 VYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFIPMDQIIKDSVESLKA 318 (323)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~l~~~~~~~~~ 318 (323)
+++++..++.||++++.++++|+++.+.+.+|...++..............+|++|+++|||+|++|+++|+++++|+++
T Consensus 239 al~~~~~~~~yni~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lg~~~~~l~e~~~~~~~~~~~ 318 (322)
T PLN02986 239 ALETPSANGRYIIDGPIMSVNDIIDILRELFPDLCIADTNEESEMNEMICKVCVEKVKNLGVEFTPMKSSLRDTILSLKE 318 (322)
T ss_pred HhcCcccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCCCccccccccCCccCHHHHHHcCCcccCHHHHHHHHHHHHHH
Confidence 99987766789998888999999999999998654443211111111123489999988999998899999999999999
Q ss_pred cCCC
Q 020608 319 KGFI 322 (323)
Q Consensus 319 ~~~~ 322 (323)
.|+|
T Consensus 319 ~~~~ 322 (322)
T PLN02986 319 KCLL 322 (322)
T ss_pred cCCC
Confidence 8875
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=348.59 Aligned_cols=308 Identities=17% Similarity=0.085 Sum_probs=236.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHH-HHHH-hhccC-CCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERE-TAHL-KALEG-ADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~-~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
+++|+|||||||||||++|+++|+++|++|++++|....... .... ..... ...+++++.+|++|.+.+.++++++|
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d 92 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVD 92 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCC
Confidence 467999999999999999999999999999999986532111 1111 11110 11367899999999999999999999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
+|||+|+....+....++...+++|+.|+.+++++|++.++++|||+||++ +|+... +.+..|+++..|.
T Consensus 93 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~-vyg~~~---~~~~~e~~~~~p~------ 162 (348)
T PRK15181 93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSS-TYGDHP---DLPKIEERIGRPL------ 162 (348)
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechH-hhCCCC---CCCCCCCCCCCCC------
Confidence 999999986655555667788999999999999999999999999999984 454332 4456676655543
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCC-ccC--cCCCcccHHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDT-YEN--FFMGSVHFKDVA 233 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~-~~~--~~~~~i~v~D~a 233 (323)
++|+.+|.++|.++..++++++++++++||+++|||+.+... .....++.++..|++.. .++ +.++|+|++|+|
T Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a 242 (348)
T PRK15181 163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVI 242 (348)
T ss_pred ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHH
Confidence 679999999999999998888999999999999999865332 23345566677777655 444 457899999999
Q ss_pred HHHHHhhcCCC---CCccEEEE-cCccCHHHHHHHHHHHCCCCCC------CCCCCCCCCCCccccccchhH-hhhCCcc
Q 020608 234 LAHILVYENPS---ACGRHLCV-EAISHYGDFVAKVAELYPEYDI------PRLPKDTQPGLLRTKDGAKKL-MDLGLQF 302 (323)
Q Consensus 234 ~~~~~~~~~~~---~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~lG~~~ 302 (323)
++++.++.... .++.||++ ++.+|++|+++.+.+.++.... +............+.+|++|+ ++|||+|
T Consensus 243 ~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~P 322 (348)
T PRK15181 243 QANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTFLSYEP 322 (348)
T ss_pred HHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHHhCCCC
Confidence 99998776432 34579985 6789999999999988863211 111111222334578899999 7799999
Q ss_pred -cCHHHHHHHHHHHHHHcC
Q 020608 303 -IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 303 -~~~~~~l~~~~~~~~~~~ 320 (323)
++++++|+++++|++.+.
T Consensus 323 ~~sl~egl~~~~~w~~~~~ 341 (348)
T PRK15181 323 EFDIKEGLKQTLKWYIDKH 341 (348)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 899999999999998764
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=341.24 Aligned_cols=320 Identities=40% Similarity=0.664 Sum_probs=246.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|.-++|+||||||+||||++|+++|+++|++|+++.|++.................+++++.+|++|.+.++++++++|+
T Consensus 1 ~~~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 80 (325)
T PLN02989 1 MADGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCET 80 (325)
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCE
Confidence 44467999999999999999999999999999998887654322222111111124688999999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccccCCCC-CCCCccccCCCCCChhhhccC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSITPSPK-WPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~ 158 (323)
|||+|+........+++...+++|+.++.+++++|.+. ++++||++||.+++++... .....+++|+.+..|.....+
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 160 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEER 160 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccc
Confidence 99999975443345567788999999999999999875 4789999999877665421 111446899988877543334
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHIL 238 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~ 238 (323)
.++|+.+|..+|.+++.++++++++++++||+++|||+...........+..+..|+... +.+.++|+|++|+|++++.
T Consensus 161 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~-~~~~r~~i~v~Dva~a~~~ 239 (325)
T PLN02989 161 KQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPF-NTTHHRFVDVRDVALAHVK 239 (325)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCC-CCcCcCeeEHHHHHHHHHH
Confidence 477999999999999999888899999999999999987643333334555666665433 3445679999999999999
Q ss_pred hhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCccccccchhHhhhCCcc-cCHHHHHHHHHHHH
Q 020608 239 VYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQ-PGLLRTKDGAKKLMDLGLQF-IPMDQIIKDSVESL 316 (323)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~~~~~~ 316 (323)
+++.+...+.||++++.+|++|+++.+.+.+|...++....... .....+..|++|+++|||+| ++++++|+++++|+
T Consensus 240 ~l~~~~~~~~~ni~~~~~s~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~p~~~l~~gi~~~~~~~ 319 (325)
T PLN02989 240 ALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKSLGIIEFTPTETSLRDTVLSL 319 (325)
T ss_pred HhcCcccCceEEEecCCCCHHHHHHHHHHHCCCCCCCCCCCCcccccccCcCCCHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99876666789998888999999999999997543322111111 11235688999997799999 99999999999999
Q ss_pred HHcCC
Q 020608 317 KAKGF 321 (323)
Q Consensus 317 ~~~~~ 321 (323)
+..+.
T Consensus 320 ~~~~~ 324 (325)
T PLN02989 320 KEKCL 324 (325)
T ss_pred HHhCC
Confidence 87764
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=340.05 Aligned_cols=319 Identities=39% Similarity=0.680 Sum_probs=235.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|..+.|+|||||||||||++|+++|+++|++|+++.|+.+................+++++.+|++|.+.+.++++++|+
T Consensus 1 ~~~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ 80 (351)
T PLN02650 1 MGSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG 80 (351)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence 56678999999999999999999999999999999997644332222211111123588999999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCcc-ccCCCCCChhh---h
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKV-KDEDCWTDEEY---C 155 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~-~~e~~~~~~~~---~ 155 (323)
|||+|+..... ..++....+++|+.++.+++++|++.+ +++|||+||.+++++... ..+ ++|+.+..... .
T Consensus 81 ViH~A~~~~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~---~~~~~~E~~~~~~~~~~~~ 156 (351)
T PLN02650 81 VFHVATPMDFE-SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEH---QKPVYDEDCWSDLDFCRRK 156 (351)
T ss_pred EEEeCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCC---CCCccCcccCCchhhhhcc
Confidence 99999865321 223345789999999999999999876 789999999866665432 222 56665422111 1
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc-CcCCCcccHHHHHH
Q 020608 156 RQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE-NFFMGSVHFKDVAL 234 (323)
Q Consensus 156 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~i~v~D~a~ 234 (323)
..+.++|+.||.++|.+++.+++++|++++++||+++|||+.................+.....+ .+.++|+|++|+|+
T Consensus 157 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~V~Dva~ 236 (351)
T PLN02650 157 KMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLCN 236 (351)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCccccCcCCCcceeeHHHHHH
Confidence 11235799999999999999998899999999999999998653221111111112233322221 23468999999999
Q ss_pred HHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc-cCHHHHHHHHH
Q 020608 235 AHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQIIKDSV 313 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~~~ 313 (323)
+++.+++++...+.|+++++.+++.|+++.+.+.++...++............+.+|++|+++|||+| ++++++|++++
T Consensus 237 a~~~~l~~~~~~~~~i~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~egl~~~i 316 (351)
T PLN02650 237 AHIFLFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKSVEFSSKKLTDLGFTFKYSLEDMFDGAI 316 (351)
T ss_pred HHHHHhcCcCcCceEEecCCCcCHHHHHHHHHHhCcccCCCCCCCCcCcccccccCChHHHHHhCCCCCCCHHHHHHHHH
Confidence 99999987666667987888899999999999988754444332222223344567888888899999 89999999999
Q ss_pred HHHHHcCCCC
Q 020608 314 ESLKAKGFIS 323 (323)
Q Consensus 314 ~~~~~~~~~~ 323 (323)
+|+++++.+|
T Consensus 317 ~~~~~~~~~~ 326 (351)
T PLN02650 317 ETCREKGLIP 326 (351)
T ss_pred HHHHHcCCCC
Confidence 9999998764
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-47 Score=334.65 Aligned_cols=318 Identities=34% Similarity=0.581 Sum_probs=233.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+||||||+||||++|+++|+++|++|+++.|+.+..........+.. ..+++++.+|++|.+++.++++++|+||
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQE-LGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCC-CCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 467899999999999999999999999999999887644332222222221 1358899999999999999999999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccccCCCCCCCCccccCCCCCChh---hhccC
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE---YCRQN 158 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~ 158 (323)
|+|+.... ...+.....+++|+.++.++++++.+. ++++||++||.++++.........+++|+.+.... ....+
T Consensus 86 h~A~~~~~-~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p 164 (338)
T PLN00198 86 HVATPVNF-ASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPP 164 (338)
T ss_pred EeCCCCcc-CCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCc
Confidence 99986422 122333457899999999999999876 58899999999666543211113356665432110 01123
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-cc-------CcCCCcccHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YE-------NFFMGSVHFK 230 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~-------~~~~~~i~v~ 230 (323)
.++|+.||.++|.+++.++++++++++++||++||||+...........+..+..+++.. .+ ++.++|+|++
T Consensus 165 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~ 244 (338)
T PLN00198 165 TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVE 244 (338)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCcceeEHH
Confidence 367999999999999999988899999999999999986432222222233455555432 22 2236899999
Q ss_pred HHHHHHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc-cCHHHHH
Q 020608 231 DVALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQII 309 (323)
Q Consensus 231 D~a~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l 309 (323)
|+|++++.+++.....+.|++++..+++.|+++.+.+.++...++...... +......+|++|++++||+| ++++++|
T Consensus 245 D~a~a~~~~~~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~G~~p~~~l~~gi 323 (338)
T PLN00198 245 DVCRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQVPTDFGDF-PSKAKLIISSEKLISEGFSFEYGIEEIY 323 (338)
T ss_pred HHHHHHHHHhhCcCcCCcEEEecCCCCHHHHHHHHHHHCCCCCCCcccccc-CCCCccccChHHHHhCCceecCcHHHHH
Confidence 999999999987655667887888899999999999988654333222211 12234678999996689999 9999999
Q ss_pred HHHHHHHHHcCCCC
Q 020608 310 KDSVESLKAKGFIS 323 (323)
Q Consensus 310 ~~~~~~~~~~~~~~ 323 (323)
+++++|++++++++
T Consensus 324 ~~~~~~~~~~~~~~ 337 (338)
T PLN00198 324 DQTVEYFKAKGLLK 337 (338)
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999875
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-45 Score=325.60 Aligned_cols=306 Identities=22% Similarity=0.223 Sum_probs=229.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~Vi 82 (323)
||+|||||||||||++|+++|+++|++++++.++............+. ...+++++.+|++|.+.+++++++ +|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVA-QSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcc-cCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 579999999999999999999999987655444322211111111111 123678899999999999999884 89999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhh---------CCcCEEEEecccccccCCCCCCCCccccCCCCCChh
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKA---------LGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE 153 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~---------~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~ 153 (323)
|+||........+.+...+++|+.++.+++++|++ .++++||++||.+ +|+.... ...+++|+.+..|.
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~-~~~~~~E~~~~~p~ 157 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLHS-TDDFFTETTPYAPS 157 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCCC-CCCCcCCCCCCCCC
Confidence 99998655434456788999999999999999976 2467999999984 4543211 13468888766554
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHH
Q 020608 154 YCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFK 230 (323)
Q Consensus 154 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~ 230 (323)
+.|+.||.++|.+++.++++++++++++||+++|||+.... .....++.+...+.+.. + +++.++|+|++
T Consensus 158 ------s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~-~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~ 230 (355)
T PRK10217 158 ------SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE-KLIPLMILNALAGKPLPVYGNGQQIRDWLYVE 230 (355)
T ss_pred ------ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcc-cHHHHHHHHHhcCCCceEeCCCCeeeCcCcHH
Confidence 67999999999999999888899999999999999986432 23344556666676543 3 45577899999
Q ss_pred HHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC--CCC----------CCCCCCCCCccccccchhH-h
Q 020608 231 DVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD--IPR----------LPKDTQPGLLRTKDGAKKL-M 296 (323)
Q Consensus 231 D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~-~ 296 (323)
|+|++++.+++....++.||++ ++++|+.|+++.+++.++... .+. ...........+.+|++|+ +
T Consensus 231 D~a~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 310 (355)
T PRK10217 231 DHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKIAR 310 (355)
T ss_pred HHHHHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHHHHHH
Confidence 9999999999876556679985 678999999999999875311 110 0011112234568899999 8
Q ss_pred hhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 297 DLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 297 ~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
+|||+| ++++++|+++++|++.+.
T Consensus 311 ~lg~~p~~~l~e~l~~~~~~~~~~~ 335 (355)
T PRK10217 311 ELGWLPQETFESGMRKTVQWYLANE 335 (355)
T ss_pred hcCCCCcCcHHHHHHHHHHHHHhCH
Confidence 899999 999999999999998764
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=321.10 Aligned_cols=317 Identities=35% Similarity=0.579 Sum_probs=226.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+||||||+||||++++++|+++|++|+++.|+...... ....+.. ..+++++.+|+++.+.+.++++++|+|||
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLH--LLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHH--HHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 57899999999999999999999999999999886532221 1112211 34688999999999999999999999999
Q ss_pred cccCCccCC--CCCchhh-----hhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCC-CCCccccCCCCCChhh
Q 020608 84 LASPCIVDK--VEDPQNQ-----LLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKW-PADKVKDEDCWTDEEY 154 (323)
Q Consensus 84 ~a~~~~~~~--~~~~~~~-----~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~-~~~~~~~e~~~~~~~~ 154 (323)
+|+...... ...++.. .++.|+.++.+++++|++.+ +++||++||.++|+..... ....+++|+.+.....
T Consensus 86 ~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~ 165 (353)
T PLN02896 86 VAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDH 165 (353)
T ss_pred CCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHH
Confidence 999765432 2233433 44556799999999998875 7899999998555432211 0013567764322110
Q ss_pred ---hccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc----C----cC
Q 020608 155 ---CRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE----N----FF 223 (323)
Q Consensus 155 ---~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~----~----~~ 223 (323)
...+.++|+.||.++|.++..++++++++++++||++||||+...........+.....|.....+ . +.
T Consensus 166 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 245 (353)
T PLN02896 166 VWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMGS 245 (353)
T ss_pred hhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccccccCc
Confidence 111335799999999999999998899999999999999998653322111112222234322111 1 13
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc-
Q 020608 224 MGSVHFKDVALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF- 302 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~- 302 (323)
++|||++|+|++++.+++.+...+.|++++..++++|+++.+.+.++...+...............+|++++++|||+|
T Consensus 246 ~dfi~v~Dva~a~~~~l~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGw~p~ 325 (353)
T PLN02896 246 IALVHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSIPSEISSKKLRDLGFEYK 325 (353)
T ss_pred eeEEeHHHHHHHHHHHHhCCCcCccEEecCCCCCHHHHHHHHHHhCCCCCccccccccccCccccccCHHHHHHcCCCcc
Confidence 4799999999999999987655567888888899999999999998743221111111111123456888887799999
Q ss_pred cCHHHHHHHHHHHHHHcCCCC
Q 020608 303 IPMDQIIKDSVESLKAKGFIS 323 (323)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~~~~ 323 (323)
++++++|+++++|+++++++|
T Consensus 326 ~~l~~~i~~~~~~~~~~~~~~ 346 (353)
T PLN02896 326 YGIEEIIDQTIDCCVDHGFLP 346 (353)
T ss_pred CCHHHHHHHHHHHHHHCCCCC
Confidence 899999999999999999875
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=323.27 Aligned_cols=305 Identities=21% Similarity=0.132 Sum_probs=233.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 80 (323)
+++|+|||||||||||++++++|+++|++|++++|+......... .+. ...+++++.+|++|.+++.+++++ +|+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~--~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFE--LLN-LAKKIEDHFGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHH--HHh-hcCCceEEEccCCCHHHHHHHHhhcCCCE
Confidence 367999999999999999999999999999999987654322111 111 123577899999999999999884 699
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
|||+|+.........++...+++|+.++.++++++++.+ ++++|++||.. +|+.... ..+++|+.+..|.
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~-vyg~~~~--~~~~~e~~~~~p~------ 149 (349)
T TIGR02622 79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDK-CYRNDEW--VWGYRETDPLGGH------ 149 (349)
T ss_pred EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechh-hhCCCCC--CCCCccCCCCCCC------
Confidence 999999765545566778899999999999999998876 78999999984 4543321 2356777665543
Q ss_pred CchHHHHHHHHHHHHHHHHhC-------CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc--cCcCCCcccHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEK-------GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY--ENFFMGSVHFK 230 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~-------~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~i~v~ 230 (323)
++|+.+|.++|.+++.++.++ +++++++||+++|||+..........++..+..|.+... +.+.++|+|++
T Consensus 150 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~rd~i~v~ 229 (349)
T TIGR02622 150 DPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVIIRNPDATRPWQHVL 229 (349)
T ss_pred CcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEECCCCcccceeeHH
Confidence 779999999999999887654 899999999999999753322334456667777776553 45677899999
Q ss_pred HHHHHHHHhhcCC-----CCCccEEEEc---CccCHHHHHHHHHHHCCCCCCCCCC---CCCCCCCccccccchhH-hhh
Q 020608 231 DVALAHILVYENP-----SACGRHLCVE---AISHYGDFVAKVAELYPEYDIPRLP---KDTQPGLLRTKDGAKKL-MDL 298 (323)
Q Consensus 231 D~a~~~~~~~~~~-----~~~~~~~~~~---~~~~~~e~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~l 298 (323)
|+|++++.+++.. ..++.||++. +++++.|+++.+.+.++..++.... ...........+|++|+ ++|
T Consensus 230 D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 309 (349)
T TIGR02622 230 EPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLL 309 (349)
T ss_pred HHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHHh
Confidence 9999999887642 2246799863 5899999999999887643222111 11122334567899999 779
Q ss_pred CCcc-cCHHHHHHHHHHHHHHc
Q 020608 299 GLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 299 G~~~-~~~~~~l~~~~~~~~~~ 319 (323)
||+| ++++++|+++++|+++.
T Consensus 310 gw~p~~~l~~gi~~~i~w~~~~ 331 (349)
T TIGR02622 310 GWHPRWGLEEAVSRTVDWYKAW 331 (349)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
Confidence 9999 99999999999999875
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=325.37 Aligned_cols=307 Identities=16% Similarity=0.171 Sum_probs=223.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhcc--CCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALE--GADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+.|+|||||||||||++|+++|+++ |++|++++|+..... .+.... ....+++++.+|++|.+.+.++++++|+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~---~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIK---HLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhh---hhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 5679999999999999999999998 599999988643221 111110 1124689999999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChh-------
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE------- 153 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~------- 153 (323)
|||+|+.........++...+..|+.++.+++++|++.+ ++|||+||.+ +|+... ..+++|+.+..+.
T Consensus 90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~-vYg~~~---~~~~~e~~p~~~~~~~~~~~ 164 (386)
T PLN02427 90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCE-VYGKTI---GSFLPKDHPLRQDPAFYVLK 164 (386)
T ss_pred EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeee-eeCCCc---CCCCCccccccccccccccc
Confidence 999999765433334455677899999999999998887 8999999985 454322 2233333332110
Q ss_pred ---------hhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC---------C-chhHHHHHHHHcC
Q 020608 154 ---------YCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT---------L-NASMLMLLRLLQG 214 (323)
Q Consensus 154 ---------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~---------~-~~~~~~~~~~~~g 214 (323)
....+.+.|+.+|.++|.++..+++.++++++++||++||||+.... . .....++..+..+
T Consensus 165 e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 244 (386)
T PLN02427 165 EDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRR 244 (386)
T ss_pred ccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcC
Confidence 00123367999999999999998888899999999999999975310 0 1122334556667
Q ss_pred CCCC-cc--CcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEc--CccCHHHHHHHHHHHCCCCCC-CC-----C-CCC
Q 020608 215 CTDT-YE--NFFMGSVHFKDVALAHILVYENPS--ACGRHLCVE--AISHYGDFVAKVAELYPEYDI-PR-----L-PKD 280 (323)
Q Consensus 215 ~~~~-~~--~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~--~~~~~~e~~~~i~~~~~~~~~-~~-----~-~~~ 280 (323)
++.. .+ .+.++|||++|+|++++.+++++. .++.||+++ +.+++.|+++.+.+.+|.... +. . .+.
T Consensus 245 ~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~ 324 (386)
T PLN02427 245 EPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTVDVSS 324 (386)
T ss_pred CCeEEECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccccccCc
Confidence 6654 33 445689999999999999998763 344699864 489999999999999874211 10 0 000
Q ss_pred C------CCCCccccccchhH-hhhCCcc-cCHHHHHHHHHHHHHH
Q 020608 281 T------QPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVESLKA 318 (323)
Q Consensus 281 ~------~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~ 318 (323)
. ......+..|++|+ ++|||+| ++++++|+++++|++.
T Consensus 325 ~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~ 370 (386)
T PLN02427 325 KEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHK 370 (386)
T ss_pred ccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHH
Confidence 0 01234567799999 7799999 9999999999999765
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=319.84 Aligned_cols=304 Identities=17% Similarity=0.193 Sum_probs=227.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC-CHhHHHHHhcCCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL-DYDAIAAAVTGCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~d~Vi 82 (323)
||+|||||||||||++|+++|+++ |++|++++|+.... . .+.. ..+++++.+|++ +.+.+.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~---~---~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRL---G---DLVN-HPRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHH---H---Hhcc-CCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 478999999999999999999987 69999998854211 1 1111 236889999997 7778888899999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChh-hhccCCCc
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE-YCRQNEIW 161 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~ 161 (323)
|+|+.........++...+++|+.++++++++|++.+ ++|||+||++ +|+... ..+++|+.+.... +...+.+.
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~-vyg~~~---~~~~~ee~~~~~~~~~~~p~~~ 148 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSE-VYGMCP---DEEFDPEASPLVYGPINKPRWI 148 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecce-eeccCC---CcCcCccccccccCcCCCccch
Confidence 9999765544456677889999999999999999887 7999999995 454432 3356665532110 01123367
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC-------CchhHHHHHHHHcCCCCC---ccCcCCCcccHHH
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-------LNASMLMLLRLLQGCTDT---YENFFMGSVHFKD 231 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~~~~---~~~~~~~~i~v~D 231 (323)
|+.+|.++|.+++.++++++++++++||+++|||+.... ......++.++..|++.. .+.+.++|||++|
T Consensus 149 Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D 228 (347)
T PRK11908 149 YACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDD 228 (347)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHH
Confidence 999999999999999888899999999999999975321 122345666777777654 2456778999999
Q ss_pred HHHHHHHhhcCCC---CCccEEEEc--CccCHHHHHHHHHHHCCCCC-C-------CCCC-CC------CCCCCcccccc
Q 020608 232 VALAHILVYENPS---ACGRHLCVE--AISHYGDFVAKVAELYPEYD-I-------PRLP-KD------TQPGLLRTKDG 291 (323)
Q Consensus 232 ~a~~~~~~~~~~~---~~~~~~~~~--~~~~~~e~~~~i~~~~~~~~-~-------~~~~-~~------~~~~~~~~~~~ 291 (323)
+|++++.+++++. .++.||+++ ..+|++|+++.|.+.++..+ + .... .. .......+..|
T Consensus 229 ~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 308 (347)
T PRK11908 229 GIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPK 308 (347)
T ss_pred HHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhccccCC
Confidence 9999999998753 245699864 36999999999998886421 1 0000 00 00112245668
Q ss_pred chhH-hhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 292 AKKL-MDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 292 ~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
++|+ +.|||+| ++++++|+++++|++++.
T Consensus 309 ~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~ 339 (347)
T PRK11908 309 IDNTMQELGWAPKTTMDDALRRIFEAYRGHV 339 (347)
T ss_pred hHHHHHHcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 8999 8899999 999999999999998754
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=316.35 Aligned_cols=302 Identities=18% Similarity=0.137 Sum_probs=228.4
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcH--HHHHHHh-hcc-CCCCCeEEEEccCCCHhHHHHHhcC--CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE--RETAHLK-ALE-GADTRLRLFQIDLLDYDAIAAAVTG--CT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~-~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~--~d 79 (323)
|+|||||||||||++|+++|+++|++|++++|+++.. .....+. ... ....+++++.+|++|.+.+.+++++ +|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 6899999999999999999999999999999876421 1111111 110 0123688999999999999999984 69
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC---EEEEecccccccCCCCCCCCccccCCCCCChhhhc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK---RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCR 156 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 156 (323)
+|||+|+..........+...+++|+.|+.+++++|++.+++ +|||+||.+ +|+... ..+++|+.+..|.
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~-vyg~~~---~~~~~E~~~~~p~--- 153 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSE-LYGKVQ---EIPQNETTPFYPR--- 153 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHH-hhCCCC---CCCCCCCCCCCCC---
Confidence 999999986554444556678889999999999999987753 899999994 455432 3467888776654
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC--chhHHHHHHHHcCCCC--Cc--cCcCCCcccHH
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL--NASMLMLLRLLQGCTD--TY--ENFFMGSVHFK 230 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~--~~~~~~~~~~~~g~~~--~~--~~~~~~~i~v~ 230 (323)
++|+.||.++|.+++.+++++++++++.|+.++|||+..... ......+.++..|++. .. +++.++|+|++
T Consensus 154 ---~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~ 230 (343)
T TIGR01472 154 ---SPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAK 230 (343)
T ss_pred ---ChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHH
Confidence 779999999999999999888999999999999999754321 1222344455566532 23 45678899999
Q ss_pred HHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC-C-------------------CCC-CCCCCCCCccc
Q 020608 231 DVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD-I-------------------PRL-PKDTQPGLLRT 288 (323)
Q Consensus 231 D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-~-------------------~~~-~~~~~~~~~~~ 288 (323)
|+|++++.+++++. .+.||++ ++++|++|+++.+.+.+|... . +.. ..........+
T Consensus 231 D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T TIGR01472 231 DYVEAMWLMLQQDK-PDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVDLL 309 (343)
T ss_pred HHHHHHHHHHhcCC-CccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccchh
Confidence 99999999998654 4679975 788999999999999987321 0 000 00112233345
Q ss_pred cccchhH-hhhCCcc-cCHHHHHHHHHHHHHH
Q 020608 289 KDGAKKL-MDLGLQF-IPMDQIIKDSVESLKA 318 (323)
Q Consensus 289 ~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~ 318 (323)
..|++|+ ++|||+| ++++++|+++++|+++
T Consensus 310 ~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 310 LGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred cCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 7799999 8899999 9999999999998874
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=323.23 Aligned_cols=301 Identities=19% Similarity=0.222 Sum_probs=226.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
+.|||||||||||||++|+++|+++|++|++++|....... ....+. ...+++++.+|+.+.. +.++|+|||
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~--~~~~~~-~~~~~~~~~~Di~~~~-----~~~~D~ViH 190 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKE--NLVHLF-GNPRFELIRHDVVEPI-----LLEVDQIYH 190 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHh--Hhhhhc-cCCceEEEECcccccc-----ccCCCEEEE
Confidence 35799999999999999999999999999999886432111 111111 1246788999987643 467999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+|+.........++...+++|+.++.+++++|++.++ +||++||.+ +|+... ..+.+|+.+... .+..+.+.|+
T Consensus 191 lAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~-VYg~~~---~~p~~E~~~~~~-~p~~p~s~Yg 264 (436)
T PLN02166 191 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPL---EHPQKETYWGNV-NPIGERSCYD 264 (436)
T ss_pred CceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHH-HhCCCC---CCCCCccccccC-CCCCCCCchH
Confidence 9997654334456778999999999999999999885 899999984 455432 346677643211 1112336799
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC-chhHHHHHHHHcCCCCC-ccC--cCCCcccHHHHHHHHHHh
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL-NASMLMLLRLLQGCTDT-YEN--FFMGSVHFKDVALAHILV 239 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~-~~~~~~~~~~~~g~~~~-~~~--~~~~~i~v~D~a~~~~~~ 239 (323)
.+|..+|.+++.+++.++++++++||+++|||+..... .....++.++..+++.. .++ +.++|+|++|+|++++.+
T Consensus 265 ~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~ 344 (436)
T PLN02166 265 EGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVAL 344 (436)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHH
Confidence 99999999999998888999999999999999864322 23345677777777654 444 467799999999999999
Q ss_pred hcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHHHHHH
Q 020608 240 YENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVESL 316 (323)
Q Consensus 240 ~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~ 316 (323)
++.. ..+.||++ ++.+|+.|+++.+.+.++......+.+..........+|++|+ +.|||+| ++++++|+++++|+
T Consensus 345 ~~~~-~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i~~~ 423 (436)
T PLN02166 345 MEGE-HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLNWEPKISLREGLPLMVSDF 423 (436)
T ss_pred HhcC-CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8754 45689985 6789999999999999874321112222223334568899999 7789999 99999999999999
Q ss_pred HHc
Q 020608 317 KAK 319 (323)
Q Consensus 317 ~~~ 319 (323)
+++
T Consensus 424 ~~~ 426 (436)
T PLN02166 424 RNR 426 (436)
T ss_pred HHH
Confidence 865
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=324.57 Aligned_cols=315 Identities=18% Similarity=0.153 Sum_probs=224.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHH--------------HHHHhhcc-CCCCCeEEEEccCCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERE--------------TAHLKALE-GADTRLRLFQIDLLD 67 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~Dl~~ 67 (323)
.+||+|||||||||||++|+++|+++|++|++++|....... ...+..+. ....+++++.+|++|
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~d 124 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICD 124 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCCC
Confidence 468999999999999999999999999999998753211100 01111110 012368899999999
Q ss_pred HhHHHHHhc--CCCEEEEcccCCccCCCCC---chhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCC-C
Q 020608 68 YDAIAAAVT--GCTGVFHLASPCIVDKVED---PQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWP-A 140 (323)
Q Consensus 68 ~~~~~~~~~--~~d~Vih~a~~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~-~ 140 (323)
.+.+.++++ ++|+|||+|+....+.... ++...+++|+.|+.+++++|++.+++ +||++||. .+|+....+ .
T Consensus 125 ~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~-~vYG~~~~~~~ 203 (442)
T PLN02572 125 FEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTM-GEYGTPNIDIE 203 (442)
T ss_pred HHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecc-eecCCCCCCCc
Confidence 999999988 4899999998754433222 23556789999999999999998875 99999998 455432110 0
Q ss_pred Ccccc------CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC--------------
Q 020608 141 DKVKD------EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-------------- 200 (323)
Q Consensus 141 ~~~~~------e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-------------- 200 (323)
+.+++ |+++.. +..+.++|+.+|.++|.++..+++.+|++++++||+++|||+....
T Consensus 204 E~~i~~~~~~~e~~~~~---~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~ 280 (442)
T PLN02572 204 EGYITITHNGRTDTLPY---PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDG 280 (442)
T ss_pred ccccccccccccccccC---CCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCccc
Confidence 11122 222111 2234478999999999999999988999999999999999986431
Q ss_pred --CchhHHHHHHHHcCCCCC-cc--CcCCCcccHHHHHHHHHHhhcCCCCCc---cEEEEcCccCHHHHHHHHHHH---C
Q 020608 201 --LNASMLMLLRLLQGCTDT-YE--NFFMGSVHFKDVALAHILVYENPSACG---RHLCVEAISHYGDFVAKVAEL---Y 269 (323)
Q Consensus 201 --~~~~~~~~~~~~~g~~~~-~~--~~~~~~i~v~D~a~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~i~~~---~ 269 (323)
......++.++..|++.. ++ .+.++|+|++|+|++++.++++....| .||++++.+|+.|+++.+.+. +
T Consensus 281 ~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs~~~si~el~~~i~~~~~~~ 360 (442)
T PLN02572 281 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFTEQFSVNELAKLVTKAGEKL 360 (442)
T ss_pred chhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCCCceeHHHHHHHHHHHHHhh
Confidence 012234456666777654 44 456789999999999999998653333 488877789999999999998 6
Q ss_pred CCC-CCCCCCCC-CCCCCccccccchhHhhhCCcc-c---CHHHHHHHHHHHHHHcCC
Q 020608 270 PEY-DIPRLPKD-TQPGLLRTKDGAKKLMDLGLQF-I---PMDQIIKDSVESLKAKGF 321 (323)
Q Consensus 270 ~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~lG~~~-~---~~~~~l~~~~~~~~~~~~ 321 (323)
+.. .+...... .......+..|++|+++|||+| + +++++|.+++.||+++-+
T Consensus 361 g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~LGw~p~~~~~~l~~~l~~~~~~~~~~~~ 418 (442)
T PLN02572 361 GLDVEVISVPNPRVEAEEHYYNAKHTKLCELGLEPHLLSDSLLDSLLNFAVKYKDRVD 418 (442)
T ss_pred CCCCCeeeCCCCcccccccccCccHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHhhcc
Confidence 532 11111111 1112234677999997799999 7 899999999999987644
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-44 Score=321.49 Aligned_cols=301 Identities=19% Similarity=0.213 Sum_probs=224.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+|||||||||||++|+++|+++|++|++++|....... ...... ...+++++.+|+.+.. +.++|+|||
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~-~~~~~~--~~~~~~~i~~D~~~~~-----l~~~D~ViH 189 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKE-NVMHHF--SNPNFELIRHDVVEPI-----LLEVDQIYH 189 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchh-hhhhhc--cCCceEEEECCccChh-----hcCCCEEEE
Confidence 56899999999999999999999999999999875432111 111111 1246888999987753 457999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+|+.........++...+++|+.++.+++++|++.++ +|||+||.. +|+... ..+.+|+.+.... +..+.+.|+
T Consensus 190 lAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~-VYg~~~---~~p~~E~~~~~~~-P~~~~s~Y~ 263 (442)
T PLN02206 190 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPL---QHPQVETYWGNVN-PIGVRSCYD 263 (442)
T ss_pred eeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChH-HhCCCC---CCCCCccccccCC-CCCccchHH
Confidence 9997654334456778999999999999999999885 999999985 444432 3456676432211 112236799
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC-CchhHHHHHHHHcCCCCC-ccC--cCCCcccHHHHHHHHHHh
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-LNASMLMLLRLLQGCTDT-YEN--FFMGSVHFKDVALAHILV 239 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-~~~~~~~~~~~~~g~~~~-~~~--~~~~~i~v~D~a~~~~~~ 239 (323)
.+|.++|.++..+.+.++++++++||+++|||+.... ......++.++..+++.. .++ +.++|+|++|+|++++.+
T Consensus 264 ~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a 343 (442)
T PLN02206 264 EGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 343 (442)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHH
Confidence 9999999999999888899999999999999975422 122345666677776654 444 467799999999999999
Q ss_pred hcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHHHHHH
Q 020608 240 YENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVESL 316 (323)
Q Consensus 240 ~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~ 316 (323)
++.. ..+.||++ ++.+|+.|+++.+.+.++........+..........+|++|+ ++|||+| ++++++|+++++|+
T Consensus 344 ~e~~-~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa~~~LGw~P~~~l~egl~~~~~~~ 422 (442)
T PLN02206 344 MEGE-HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDF 422 (442)
T ss_pred HhcC-CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8765 45679985 6789999999999998853211111112222334567899999 8899999 99999999999999
Q ss_pred HHc
Q 020608 317 KAK 319 (323)
Q Consensus 317 ~~~ 319 (323)
+..
T Consensus 423 ~~~ 425 (442)
T PLN02206 423 RQR 425 (442)
T ss_pred HHh
Confidence 764
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=313.63 Aligned_cols=310 Identities=20% Similarity=0.209 Sum_probs=232.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHH-HHHHhhcc-CCCCCeEEEEccCCCHhHHHHHhc--
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERE-TAHLKALE-GADTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
|+|++|+|||||||||||++|+++|+++|++|++++|....... ........ ....+++++.+|++|.+.+.++++
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~ 80 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST 80 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence 88899999999999999999999999999999999875432211 11222211 112468889999999999998886
Q ss_pred CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhc
Q 020608 77 GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCR 156 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 156 (323)
++|+|||+|+.........++...+++|+.++.+++++|++.++++||++||+ .+|+... ..+++|+.+..+.
T Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~-~vyg~~~---~~~~~E~~~~~~~--- 153 (352)
T PLN02240 81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSA-TVYGQPE---EVPCTEEFPLSAT--- 153 (352)
T ss_pred CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccH-HHhCCCC---CCCCCCCCCCCCC---
Confidence 68999999997544344456778999999999999999999888999999998 5554432 5578898877664
Q ss_pred cCCCchHHHHHHHHHHHHHHHHh-CCccEEEEcCCCccCCCCC------CC--CchhHHHHHHHHcCCCC--C-------
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKE-KGLDVVVVNPGTVMGPVIP------PT--LNASMLMLLRLLQGCTD--T------- 218 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~Rp~~v~G~~~~------~~--~~~~~~~~~~~~~g~~~--~------- 218 (323)
+.|+.+|.++|.+++.++.. .+++++++|++++||++.. .. ......++..+..++.. .
T Consensus 154 ---~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (352)
T PLN02240 154 ---NPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYP 230 (352)
T ss_pred ---CHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCC
Confidence 67999999999999988654 5899999999999997532 11 11122334444444321 1
Q ss_pred --ccCcCCCcccHHHHHHHHHHhhcCC----CC-CccEEEE-cCccCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCcccc
Q 020608 219 --YENFFMGSVHFKDVALAHILVYENP----SA-CGRHLCV-EAISHYGDFVAKVAELYPEYDIPRL-PKDTQPGLLRTK 289 (323)
Q Consensus 219 --~~~~~~~~i~v~D~a~~~~~~~~~~----~~-~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 289 (323)
.+.+.++|||++|+|++++.+++.. .. ++.||++ ++++|++|+++.+.+.++.. .+.. .+........+.
T Consensus 231 ~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~~ 309 (352)
T PLN02240 231 TKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKK-IPLKLAPRRPGDAEEVY 309 (352)
T ss_pred CCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCC-CCceeCCCCCCChhhhh
Confidence 2344567999999999999888642 22 3469974 78899999999999998642 2221 122222334456
Q ss_pred ccchhH-hhhCCcc-cCHHHHHHHHHHHHHHcCC
Q 020608 290 DGAKKL-MDLGLQF-IPMDQIIKDSVESLKAKGF 321 (323)
Q Consensus 290 ~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~~ 321 (323)
.|++|+ ++|||+| ++++++|+++++|+++++.
T Consensus 310 ~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 343 (352)
T PLN02240 310 ASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPY 343 (352)
T ss_pred cCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 799999 8899999 8999999999999998864
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=313.51 Aligned_cols=299 Identities=15% Similarity=0.110 Sum_probs=222.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+|||||||||||++|+++|+++||+|++++|..+... .......+++.+|++|.+.+..+++++|+|||
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~--------~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih 91 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM--------SEDMFCHEFHLVDLRVMENCLKVTKGVDHVFN 91 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc--------ccccccceEEECCCCCHHHHHHHHhCCCEEEE
Confidence 5789999999999999999999999999999998643211 00011357789999999999998999999999
Q ss_pred cccCCccC-CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCC-CCCccccCCC--CCChhhhccCC
Q 020608 84 LASPCIVD-KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKW-PADKVKDEDC--WTDEEYCRQNE 159 (323)
Q Consensus 84 ~a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~-~~~~~~~e~~--~~~~~~~~~~~ 159 (323)
+|+..... ....++...++.|+.++.+++++|++.++++|||+||.. +|+.... ....++.|++ +..| .
T Consensus 92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~-vYg~~~~~~~~~~~~E~~~~p~~p------~ 164 (370)
T PLN02695 92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSAC-IYPEFKQLETNVSLKESDAWPAEP------Q 164 (370)
T ss_pred cccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchh-hcCCccccCcCCCcCcccCCCCCC------C
Confidence 99865321 122334556789999999999999999999999999984 4544321 1112456654 3333 3
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcC-CCCC-c--cCcCCCcccHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQG-CTDT-Y--ENFFMGSVHFKDV 232 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g-~~~~-~--~~~~~~~i~v~D~ 232 (323)
+.|+.+|..+|.+++.++.+++++++++||+++|||+..... .....++.++..+ .+.. . +++.++|+|++|+
T Consensus 165 s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~ 244 (370)
T PLN02695 165 DAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDEC 244 (370)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHH
Confidence 779999999999999998888999999999999999754221 1233445555443 3333 3 4456789999999
Q ss_pred HHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHH
Q 020608 233 ALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQII 309 (323)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l 309 (323)
+++++.+++.. ..+.||++ ++.+|++|+++.+.+..|... +...............|++|+ +.|||+| ++++++|
T Consensus 245 a~ai~~~~~~~-~~~~~nv~~~~~~s~~el~~~i~~~~g~~~-~i~~~~~~~~~~~~~~d~sk~~~~lgw~p~~~l~e~i 322 (370)
T PLN02695 245 VEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEIALSFENKKL-PIKHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGL 322 (370)
T ss_pred HHHHHHHHhcc-CCCceEecCCCceeHHHHHHHHHHHhCCCC-CceecCCCCCccccccCHHHHHHhcCCCCCCCHHHHH
Confidence 99999988764 34679985 678999999999998876421 211111112223456899999 7799999 8999999
Q ss_pred HHHHHHHHHc
Q 020608 310 KDSVESLKAK 319 (323)
Q Consensus 310 ~~~~~~~~~~ 319 (323)
+++++|++++
T Consensus 323 ~~~~~~~~~~ 332 (370)
T PLN02695 323 RITYFWIKEQ 332 (370)
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=310.06 Aligned_cols=305 Identities=17% Similarity=0.129 Sum_probs=230.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcH--HHHHHHh-hccCCCCCeEEEEccCCCHhHHHHHhcC--
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE--RETAHLK-ALEGADTRLRLFQIDLLDYDAIAAAVTG-- 77 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 77 (323)
.++|+|||||||||||++|+++|+++|++|+++.|+.+.. ...+... .......+++++.+|++|.+.+.++++.
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 4679999999999999999999999999999999875321 1111111 0111123688999999999999998884
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-----EEEEecccccccCCCCCCCCccccCCCCCCh
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-----RVVVTSSISSITPSPKWPADKVKDEDCWTDE 152 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~ 152 (323)
+|+|||+|+.........++...+++|+.++.++++++++.+++ +||++||. .+|+.. ..+++|+.+..|
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~-~vyg~~----~~~~~E~~~~~p 158 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSS-EMYGST----PPPQSETTPFHP 158 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccH-HHhCCC----CCCCCCCCCCCC
Confidence 69999999986554444566778899999999999999988765 89999998 455543 226788877665
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCCCCC--c--cCcCCCc
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGCTDT--Y--ENFFMGS 226 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~~--~--~~~~~~~ 226 (323)
. +.|+.||.++|.+++.++.++++.++..|+.++|||+...... ....++.++..+.+.. . +++.++|
T Consensus 159 ~------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~ 232 (340)
T PLN02653 159 R------SPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDW 232 (340)
T ss_pred C------ChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecc
Confidence 4 7799999999999999998889999999999999997543221 1122334455665432 2 3456789
Q ss_pred ccHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCC---CCCCCCC-CCCCCCccccccchhH-hhhCC
Q 020608 227 VHFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEY---DIPRLPK-DTQPGLLRTKDGAKKL-MDLGL 300 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~-~~lG~ 300 (323)
+|++|+|++++.++++.. .+.||++ ++++|+.|+++.+.+.++.. .+..... ..........+|++|+ ++|||
T Consensus 233 i~v~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw 311 (340)
T PLN02653 233 GFAGDYVEAMWLMLQQEK-PDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGW 311 (340)
T ss_pred eeHHHHHHHHHHHHhcCC-CCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHHhCC
Confidence 999999999999998653 4679974 78899999999999998742 1111111 1122334567899999 88999
Q ss_pred cc-cCHHHHHHHHHHHHHHc
Q 020608 301 QF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 301 ~~-~~~~~~l~~~~~~~~~~ 319 (323)
+| ++++++|+++++|++..
T Consensus 312 ~p~~~l~~gi~~~~~~~~~~ 331 (340)
T PLN02653 312 KPKVGFEQLVKMMVDEDLEL 331 (340)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99 99999999999998743
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=335.23 Aligned_cols=307 Identities=16% Similarity=0.174 Sum_probs=231.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhH-HHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDA-IAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~V 81 (323)
++|+|||||||||||++|+++|+++ |++|++++|...... . +.. ..+++++.+|++|.+. ++++++++|+|
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~--~----~~~-~~~~~~~~gDl~d~~~~l~~~l~~~D~V 386 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAIS--R----FLG-HPRFHFVEGDISIHSEWIEYHIKKCDVV 386 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhh--h----hcC-CCceEEEeccccCcHHHHHHHhcCCCEE
Confidence 4789999999999999999999986 799999998653211 1 111 2368899999998655 67788999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhc-cCCC
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCR-QNEI 160 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~ 160 (323)
||+|+.........++...+++|+.++.+++++|++.+ ++|||+||.+ +|+... ..+++|+++..+..+. .+.+
T Consensus 387 iHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~-vyg~~~---~~~~~E~~~~~~~~p~~~p~s 461 (660)
T PRK08125 387 LPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSE-VYGMCT---DKYFDEDTSNLIVGPINKQRW 461 (660)
T ss_pred EECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchh-hcCCCC---CCCcCccccccccCCCCCCcc
Confidence 99999866544455667789999999999999999988 8999999984 455432 4467887754221111 1335
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC-------CchhHHHHHHHHcCCCCC-c--cCcCCCcccHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-------LNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFK 230 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~ 230 (323)
.|+.||.++|.+++.+++.++++++++||+++|||+.... ......++.++..+++.. . +.+.++|+|++
T Consensus 462 ~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~ 541 (660)
T PRK08125 462 IYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIR 541 (660)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHH
Confidence 7999999999999999888899999999999999975421 122345566666777654 3 34568899999
Q ss_pred HHHHHHHHhhcCCC---CCccEEEEc-C-ccCHHHHHHHHHHHCCCCC----CCCCCCC-----------CCCCCccccc
Q 020608 231 DVALAHILVYENPS---ACGRHLCVE-A-ISHYGDFVAKVAELYPEYD----IPRLPKD-----------TQPGLLRTKD 290 (323)
Q Consensus 231 D~a~~~~~~~~~~~---~~~~~~~~~-~-~~~~~e~~~~i~~~~~~~~----~~~~~~~-----------~~~~~~~~~~ 290 (323)
|+|++++.++++.. .++.||+++ + .+|++|+++.+.+.++... ++..... .........+
T Consensus 542 Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
T PRK08125 542 DGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVEHRKP 621 (660)
T ss_pred HHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccccccccccCC
Confidence 99999999998653 234699864 4 6899999999999987422 1111100 0012234567
Q ss_pred cchhH-hhhCCcc-cCHHHHHHHHHHHHHHcCCC
Q 020608 291 GAKKL-MDLGLQF-IPMDQIIKDSVESLKAKGFI 322 (323)
Q Consensus 291 ~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~~~ 322 (323)
|++|+ ++|||+| ++++++|+++++|++++..+
T Consensus 622 d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~ 655 (660)
T PRK08125 622 SIRNARRLLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_pred ChHHHHHHhCCCCCCcHHHHHHHHHHHHHhcccc
Confidence 99999 7899999 99999999999999987653
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=288.25 Aligned_cols=302 Identities=20% Similarity=0.216 Sum_probs=237.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCC-CcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNL-SDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCT 79 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 79 (323)
-++++||||+||||++.+..++.. .++.+.++.-. ... ...++... ..++..++.+|+.+...+..++. .+|
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~~~l~~~~-n~p~ykfv~~di~~~~~~~~~~~~~~id 82 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--LKNLEPVR-NSPNYKFVEGDIADADLVLYLFETEEID 82 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--cchhhhhc-cCCCceEeeccccchHHHHhhhccCchh
Confidence 378999999999999999999986 45555554311 111 22222222 24689999999999888777766 689
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
.|+|+|+...+..+..++.+....|+.++.+|+++++.. ++++|||+||. .+|+..+. .....|...++|.
T Consensus 83 ~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTd-eVYGds~~--~~~~~E~s~~nPt----- 154 (331)
T KOG0747|consen 83 TVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTD-EVYGDSDE--DAVVGEASLLNPT----- 154 (331)
T ss_pred hhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEeccc-ceecCccc--cccccccccCCCC-----
Confidence 999999999998888899999999999999999999988 49999999999 66665542 2233377777776
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCc--CCCcccHHHHHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENF--FMGSVHFKDVALA 235 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~--~~~~i~v~D~a~~ 235 (323)
++|+++|+++|..+++|.+++|++++++|.++||||++.+. ...+.++.....+++.. .|++ .++|+|++|++++
T Consensus 155 -npyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~-klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea 232 (331)
T KOG0747|consen 155 -NPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPE-KLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEA 232 (331)
T ss_pred -CchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChH-HHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHH
Confidence 88999999999999999999999999999999999987643 33444555445565554 4444 5669999999999
Q ss_pred HHHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHC----CCC---CCCCCCCCCCCCCccccccchhHhhhCCcc-cCHH
Q 020608 236 HILVYENPSACGRHLC-VEAISHYGDFVAKVAELY----PEY---DIPRLPKDTQPGLLRTKDGAKKLMDLGLQF-IPMD 306 (323)
Q Consensus 236 ~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~ 306 (323)
+..+++..+.+.+||+ ++.+.+..|+++.|.+.+ +.. +.+....+++....++.+|.+|++.|||+| ++++
T Consensus 233 ~~~v~~Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik~LGw~~~~p~~ 312 (331)
T KOG0747|consen 233 FKAVLEKGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIKKLGWRPTTPWE 312 (331)
T ss_pred HHHHHhcCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHHhcCCcccCcHH
Confidence 9999999766777997 477888888888887766 322 223333445555667999999999999999 9999
Q ss_pred HHHHHHHHHHHHc
Q 020608 307 QIIKDSVESLKAK 319 (323)
Q Consensus 307 ~~l~~~~~~~~~~ 319 (323)
+||+.+++||.++
T Consensus 313 eGLrktie~y~~~ 325 (331)
T KOG0747|consen 313 EGLRKTIEWYTKN 325 (331)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=286.97 Aligned_cols=300 Identities=19% Similarity=0.222 Sum_probs=245.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc--CCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE--GADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
.++++|+||||.||||||||+.|..+||+|++++--.+.. ...+. ...+.++.+.-|+..+ ++.++|.
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~-----k~n~~~~~~~~~fel~~hdv~~p-----l~~evD~ 94 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGR-----KENLEHWIGHPNFELIRHDVVEP-----LLKEVDQ 94 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccc-----hhhcchhccCcceeEEEeechhH-----HHHHhhh
Confidence 3578999999999999999999999999999997543221 11111 1134677777777554 6778999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|||+|+..+......++..++.+|+.++.+++-.|++.+ +||++.||+ .+|+.+. ..|-.|+.|.+.. +..+..
T Consensus 95 IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTs-eVYgdp~---~hpq~e~ywg~vn-pigpr~ 168 (350)
T KOG1429|consen 95 IYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTS-EVYGDPL---VHPQVETYWGNVN-PIGPRS 168 (350)
T ss_pred hhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecc-cccCCcc---cCCCccccccccC-cCCchh
Confidence 999999988877788889999999999999999999998 799999998 7777754 6677888776653 445667
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC-CchhHHHHHHHHcCCCCC-ccCc--CCCcccHHHHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-LNASMLMLLRLLQGCTDT-YENF--FMGSVHFKDVALAH 236 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-~~~~~~~~~~~~~g~~~~-~~~~--~~~~i~v~D~a~~~ 236 (323)
.|...|+++|.++..|.++.|+.+.|.|+++.|||...-. ......++....++.+.. ++++ .++|+|++|+++++
T Consensus 169 cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegl 248 (350)
T KOG1429|consen 169 CYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGL 248 (350)
T ss_pred hhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHH
Confidence 7999999999999999999999999999999999976533 334446677778888776 5655 45599999999999
Q ss_pred HHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHHH
Q 020608 237 ILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSV 313 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~ 313 (323)
+.+++.+..+ -+|+ .++.+|+.|+++++.+..+....+.+.....+++.....|+.++ +.|||.| .+|+++|+.++
T Consensus 249 l~Lm~s~~~~-pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~~t~ 327 (350)
T KOG1429|consen 249 LRLMESDYRG-PVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQLGWEPKVSLREGLPLTV 327 (350)
T ss_pred HHHhcCCCcC-CcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHhCCCCCCcHHHhhHHHH
Confidence 9999977553 3776 57889999999999999976655666666667778889999999 7899999 99999999999
Q ss_pred HHHHHc
Q 020608 314 ESLKAK 319 (323)
Q Consensus 314 ~~~~~~ 319 (323)
.|.+++
T Consensus 328 ~~fr~~ 333 (350)
T KOG1429|consen 328 TYFRER 333 (350)
T ss_pred HHHHHH
Confidence 998763
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=308.32 Aligned_cols=306 Identities=21% Similarity=0.163 Sum_probs=225.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCE-EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
|+|||||||||||++|+++|+++|++ |+++.|...... ......+. ...+++++.+|++|.+++.++++ ++|+||
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 78 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN-LESLADVS-DSERYVFEHADICDRAELDRIFAQHQPDAVM 78 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch-HHHHHhcc-cCCceEEEEecCCCHHHHHHHHHhcCCCEEE
Confidence 48999999999999999999999976 555544321111 11121221 12357889999999999999987 489999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC---------CcCEEEEecccccccCCCCCCC-------CccccC
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL---------GVKRVVVTSSISSITPSPKWPA-------DKVKDE 146 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~v~~SS~~~~~~~~~~~~-------~~~~~e 146 (323)
|+|+.........++..++++|+.++.+++++|++. ++++||++||.++ |+....+. ..+++|
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~v-yg~~~~~~~~~~~~~~~~~~E 157 (352)
T PRK10084 79 HLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEV-YGDLPHPDEVENSEELPLFTE 157 (352)
T ss_pred ECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhh-cCCCCccccccccccCCCccc
Confidence 999976443344566889999999999999999864 4679999999854 44321000 123677
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~ 223 (323)
+++..|. +.|+.+|.++|.+++.++++++++++++||+++|||+.... .....++..+..+.+.. + +++.
T Consensus 158 ~~~~~p~------~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~ 230 (352)
T PRK10084 158 TTAYAPS------SPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQI 230 (352)
T ss_pred cCCCCCC------ChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCcc-chHHHHHHHHhcCCCeEEeCCCCeE
Confidence 7666554 77999999999999999888899999999999999985322 23344556666666543 3 4557
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC---CCCC-----CCCCCCCCccccccchh
Q 020608 224 MGSVHFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD---IPRL-----PKDTQPGLLRTKDGAKK 294 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~ 294 (323)
++|+|++|+|++++.+++....++.||++ ++.+++.|+++.+++.++... .+.. ..........+.+|++|
T Consensus 231 ~~~v~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~k 310 (352)
T PRK10084 231 RDWLYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDASK 310 (352)
T ss_pred EeeEEHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeeeCHHH
Confidence 78999999999999998875556679986 678899999999999886421 0100 01111223346789999
Q ss_pred H-hhhCCcc-cCHHHHHHHHHHHHHHcCC
Q 020608 295 L-MDLGLQF-IPMDQIIKDSVESLKAKGF 321 (323)
Q Consensus 295 ~-~~lG~~~-~~~~~~l~~~~~~~~~~~~ 321 (323)
+ ++|||+| ++++++|+++++|++++..
T Consensus 311 ~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 339 (352)
T PRK10084 311 ISRELGWKPQETFESGIRKTVEWYLANTE 339 (352)
T ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHhCHH
Confidence 9 7799999 9999999999999988643
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=330.74 Aligned_cols=308 Identities=19% Similarity=0.163 Sum_probs=232.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh--cCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV--TGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~d 79 (323)
++|+|||||||||||++|+++|+++ +++|++++|..... ....+... ....+++++.+|++|.+.+..++ .++|
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~-~~~~l~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCS-NLKNLNPS-KSSPNFKFVKGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccc-hhhhhhhc-ccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence 4689999999999999999999998 68999988743111 11111111 11247899999999998888765 5799
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
+|||+|+.........++...+++|+.++.+++++|++.+ +++|||+||.. +|+........+.+|+.+..|.
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~-vyg~~~~~~~~~~~E~~~~~p~----- 156 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDE-VYGETDEDADVGNHEASQLLPT----- 156 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchH-HhCCCccccccCccccCCCCCC-----
Confidence 9999999876544445566788999999999999999887 89999999984 4544322111223566555443
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-cc--CcCCCcccHHHHHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YE--NFFMGSVHFKDVALA 235 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~--~~~~~~i~v~D~a~~ 235 (323)
++|+.+|.++|.+++.++++++++++++||++||||+.... .....++..+..|.+.. .+ .+.++|+|++|+|++
T Consensus 157 -~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~-~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a 234 (668)
T PLN02260 157 -NPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE-KLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEA 234 (668)
T ss_pred -CCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcc-cHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHH
Confidence 77999999999999999888899999999999999986432 22334455666666554 33 345679999999999
Q ss_pred HHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCC--CCCCCCCCCCccccccchhHhhhCCcc-cCHHHHHHH
Q 020608 236 HILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIP--RLPKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQIIKD 311 (323)
Q Consensus 236 ~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~ 311 (323)
+..+++....++.||++ ++.+++.|+++.+++.+|..... ......+.....+.+|++|+++|||+| ++++++|++
T Consensus 235 ~~~~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~~lGw~p~~~~~egl~~ 314 (668)
T PLN02260 235 FEVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLKKLGWQERTSWEEGLKK 314 (668)
T ss_pred HHHHHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHHHcCCCCCCCHHHHHHH
Confidence 99999876667789985 67899999999999998743211 111112223345678999998899999 999999999
Q ss_pred HHHHHHHcCC
Q 020608 312 SVESLKAKGF 321 (323)
Q Consensus 312 ~~~~~~~~~~ 321 (323)
+++|+++++.
T Consensus 315 ~i~w~~~~~~ 324 (668)
T PLN02260 315 TMEWYTSNPD 324 (668)
T ss_pred HHHHHHhChh
Confidence 9999998754
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=297.19 Aligned_cols=300 Identities=32% Similarity=0.408 Sum_probs=230.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|+||||+||||++++++|+++|++|++++|++..... +. ..+++++.+|++|.++++++++++|+|||+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~--~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN------LE--GLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc------cc--cCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 489999999999999999999999999999997543211 11 1267889999999999999999999999999
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+... ....++...+++|+.++.++++++++.+++++|++||.+++..... ..+++|+.+..+. ...+.|+.+
T Consensus 73 ~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~---~~~~~e~~~~~~~---~~~~~Y~~s 144 (328)
T TIGR03466 73 ADYR--LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGD---GTPADETTPSSLD---DMIGHYKRS 144 (328)
T ss_pred eecc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCC---CCCcCccCCCCcc---cccChHHHH
Confidence 8532 2344567889999999999999999988999999999955543222 4567888766542 122569999
Q ss_pred HHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCC
Q 020608 166 KTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 166 K~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
|.++|.+++.++.+++++++++||+.+|||+...... ....+.....+......+...+|+|++|+|++++.++++...
T Consensus 145 K~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~ 223 (328)
T TIGR03466 145 KFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTP-TGRIIVDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERGRI 223 (328)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCc-HHHHHHHHHcCCCceeeCCCcceEEHHHHHHHHHHHHhCCCC
Confidence 9999999999988789999999999999997543221 222333444444333344456799999999999999987655
Q ss_pred CccEEEEcCccCHHHHHHHHHHHCCCCC----CCCCC--------------CCCCCC---------CccccccchhH-hh
Q 020608 246 CGRHLCVEAISHYGDFVAKVAELYPEYD----IPRLP--------------KDTQPG---------LLRTKDGAKKL-MD 297 (323)
Q Consensus 246 ~~~~~~~~~~~~~~e~~~~i~~~~~~~~----~~~~~--------------~~~~~~---------~~~~~~~~~~~-~~ 297 (323)
+..|+++++.+++.|+++.+.+.+|... +|... ....+. ...+.+|++|+ +.
T Consensus 224 ~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 303 (328)
T TIGR03466 224 GERYILGGENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRE 303 (328)
T ss_pred CceEEecCCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCChHHHHHH
Confidence 4458888888999999999999987421 11100 000010 12457899999 88
Q ss_pred hCCcccCHHHHHHHHHHHHHHcCCC
Q 020608 298 LGLQFIPMDQIIKDSVESLKAKGFI 322 (323)
Q Consensus 298 lG~~~~~~~~~l~~~~~~~~~~~~~ 322 (323)
|||+|++++++|+++++|++++|++
T Consensus 304 lg~~p~~~~~~i~~~~~~~~~~~~~ 328 (328)
T TIGR03466 304 LGYRQRPAREALRDAVEWFRANGYL 328 (328)
T ss_pred cCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=292.02 Aligned_cols=289 Identities=32% Similarity=0.550 Sum_probs=219.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+|||||||||||++++++|+++|++|+++.|+.+.......+..+.....+++++.+|++|.+.+.+++.++|.|+|
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~ 84 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC 84 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 56899999999999999999999999999999986433322222333322234688999999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccccCC-CCCCCCccccCCCCCChhhhccCCCc
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSITPS-PKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
+++.... ....+..++++|+.++.+++++|.+. ++++||++||.++++.. .......+++|++|..+.++..+..+
T Consensus 85 ~~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 162 (297)
T PLN02583 85 CFDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLW 162 (297)
T ss_pred eCccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccH
Confidence 8764321 12235678999999999999999876 58899999999765422 11112457888888666554444457
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhc
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
|+.||..+|++++.++++.+++++++||++||||+..... ....+.....+++.+.|||++|+|++++.+++
T Consensus 163 Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~--------~~~~~~~~~~~~~~~~~v~V~Dva~a~~~al~ 234 (297)
T PLN02583 163 HALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN--------PYLKGAAQMYENGVLVTVDVNFLVDAHIRAFE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch--------hhhcCCcccCcccCcceEEHHHHHHHHHHHhc
Confidence 9999999999999998778999999999999999764321 12233333345556779999999999999999
Q ss_pred CCCCCccEEEEcCccC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc
Q 020608 242 NPSACGRHLCVEAISH-YGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF 302 (323)
Q Consensus 242 ~~~~~~~~~~~~~~~~-~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~ 302 (323)
.+...+.|+++++.++ +.++++++.+.+|..+++....+..+......++++|+++||+++
T Consensus 235 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 296 (297)
T PLN02583 235 DVSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYEMQGSEVYQQRIRNKKLNKLMEDF 296 (297)
T ss_pred CcccCCcEEEecCCCccHHHHHHHHHHhCCCCCCCCcccccCCCccccccChHHHHHhCccc
Confidence 8888888999877655 678999999999987665432221233345788999999999874
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=295.81 Aligned_cols=303 Identities=20% Similarity=0.173 Sum_probs=229.7
Q ss_pred eEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCEEE
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTGVF 82 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~Vi 82 (323)
+|||||||||||++++++|+++| ++|+++.|...... .+....+.. ..+++++.+|++|++++.+++++ +|+||
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 78 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGN-LENLADLED-NPRYRFVKGDIGDRELVSRLFTEHQPDAVV 78 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchh-hhhhhhhcc-CCCcEEEEcCCcCHHHHHHHHhhcCCCEEE
Confidence 58999999999999999999987 78998876432111 111222211 23678899999999999999987 89999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
|+|+..........+...+++|+.++.+++++|++.+.+ ++|++||..+ |+.... ..+++|+.+..|. +.
T Consensus 79 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v-~g~~~~--~~~~~e~~~~~~~------~~ 149 (317)
T TIGR01181 79 HFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEV-YGDLEK--GDAFTETTPLAPS------SP 149 (317)
T ss_pred EcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccce-eCCCCC--CCCcCCCCCCCCC------Cc
Confidence 999976544445567788999999999999999887543 8999999854 443321 2257777766553 67
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHHHHHHHHHH
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDVALAHIL 238 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~a~~~~~ 238 (323)
|+.+|..+|.+++.++.+.+++++++||+.+|||..... .....++..+..+.+.. . +...++|+|++|+|+++..
T Consensus 150 Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~ 228 (317)
T TIGR01181 150 YSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPE-KLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYL 228 (317)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcc-cHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHH
Confidence 999999999999999888899999999999999976432 23334556666676543 3 3346779999999999999
Q ss_pred hhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHHHH
Q 020608 239 VYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDI-PRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVE 314 (323)
Q Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~ 314 (323)
++++...++.||++ ++.+++.|+++.+.+.++..+. .............+.+|++|+ +.|||+| ++++++|+++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~ 308 (317)
T TIGR01181 229 VLEKGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFEEGLRKTVQ 308 (317)
T ss_pred HHcCCCCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 99876556679985 6789999999999999974221 111111222223456899999 7899999 899999999999
Q ss_pred HHHHcCC
Q 020608 315 SLKAKGF 321 (323)
Q Consensus 315 ~~~~~~~ 321 (323)
|++++..
T Consensus 309 ~~~~~~~ 315 (317)
T TIGR01181 309 WYLDNEW 315 (317)
T ss_pred HHHhccC
Confidence 9988764
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=296.22 Aligned_cols=302 Identities=18% Similarity=0.146 Sum_probs=222.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHH-HHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERE-TAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
|+|||||||||||++|+++|+++|++|+++.|....... ........ ..++.++.+|++|.+.+.++++ ++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhc--CCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 589999999999999999999999999998765332221 11122211 2356788999999999998887 589999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCC-ChhhhccCCCc
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWT-DEEYCRQNEIW 161 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~~~ 161 (323)
|+|+..........+...+++|+.++.++++++++.++++||++||++ +|+... ..+++|+++. .|. +.
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~-~yg~~~---~~~~~E~~~~~~p~------~~ 148 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSAT-VYGDQP---KIPYVESFPTGTPQ------SP 148 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHH-hhCCCC---CCccccccCCCCCC------Ch
Confidence 999875443334455678999999999999999999999999999984 444332 4567888765 332 67
Q ss_pred hHHHHHHHHHHHHHHHHhC-CccEEEEcCCCccCCCCC------CC--CchhHHHHHHHHcCC-CC--------C--ccC
Q 020608 162 YPLSKTLAEKAAWEFAKEK-GLDVVVVNPGTVMGPVIP------PT--LNASMLMLLRLLQGC-TD--------T--YEN 221 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~-~~~~~~~Rp~~v~G~~~~------~~--~~~~~~~~~~~~~g~-~~--------~--~~~ 221 (323)
|+.+|.++|.+++.+++.. +++++++|++++|||... .. .......+.++..+. +. . .+.
T Consensus 149 Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 228 (338)
T PRK10675 149 YGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228 (338)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCc
Confidence 9999999999999987654 899999999999997421 10 111222334444432 11 1 234
Q ss_pred cCCCcccHHHHHHHHHHhhcCC--CC-CccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-h
Q 020608 222 FFMGSVHFKDVALAHILVYENP--SA-CGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-M 296 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~--~~-~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 296 (323)
+.++|+|++|+|++++.+++.. .. ++.||++ ++.+|+.|+++.+.+.++........+..........+|++|+ +
T Consensus 229 ~~~~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~ 308 (338)
T PRK10675 229 GVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADR 308 (338)
T ss_pred EEEeeEEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCCCchhhhhcCHHHHHH
Confidence 4578999999999999998752 22 3469985 7789999999999999974221111122222334567899999 7
Q ss_pred hhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 297 DLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 297 ~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
.+||+| ++++++|+++++|++++
T Consensus 309 ~lg~~p~~~~~~~~~~~~~~~~~~ 332 (338)
T PRK10675 309 ELNWRVTRTLDEMAQDTWHWQSRH 332 (338)
T ss_pred HhCCCCcCcHHHHHHHHHHHHHhh
Confidence 899999 99999999999999875
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=298.66 Aligned_cols=297 Identities=26% Similarity=0.411 Sum_probs=217.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC---CCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG---ADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
+++|+||||||+||||++|+++|+++|++|+++.|+.+.......+..... ...+++++.+|++|.+.+.++++++|
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~~d 130 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDGCA 130 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHhcc
Confidence 467899999999999999999999999999998886533222111111100 01357889999999999999999999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccc-cccCCC-CCCCCccccCCCCCChhhhc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSIS-SITPSP-KWPADKVKDEDCWTDEEYCR 156 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~-~~~~~~-~~~~~~~~~e~~~~~~~~~~ 156 (323)
+|||+|+...............++|+.++.+++++|++. ++++|||+||.+ .+|+.. .......++|+.+.....+.
T Consensus 131 ~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~~~ 210 (367)
T PLN02686 131 GVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFCR 210 (367)
T ss_pred EEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChhhcc
Confidence 999999875432221222456788999999999999886 799999999974 344421 11001346777655443344
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHH
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAH 236 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~ 236 (323)
.+.++|+.+|.++|.+++.+++++|++++++||++||||+...... ..+.....|....++++.++|+||+|+|+++
T Consensus 211 ~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~---~~~~~~~~g~~~~~g~g~~~~v~V~Dva~A~ 287 (367)
T PLN02686 211 DNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNS---TATIAYLKGAQEMLADGLLATADVERLAEAH 287 (367)
T ss_pred cccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCC---hhHHHHhcCCCccCCCCCcCeEEHHHHHHHH
Confidence 4557899999999999999988889999999999999997543221 1122444565444677777899999999999
Q ss_pred HHhhcCC---CCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCC-CCCCccccccchhH-hhhCCcc
Q 020608 237 ILVYENP---SACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDT-QPGLLRTKDGAKKL-MDLGLQF 302 (323)
Q Consensus 237 ~~~~~~~---~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~lG~~~ 302 (323)
+.+++.. ..++.|+++++.+++.|+++.+.+.++........+.. ......+..|++|+ ++|||+|
T Consensus 288 ~~al~~~~~~~~~~~yi~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~kl~~~l~~~~ 358 (367)
T PLN02686 288 VCVYEAMGNKTAFGRYICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNKKLSRLMSRTR 358 (367)
T ss_pred HHHHhccCCCCCCCcEEEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHHHHHHHHHHhh
Confidence 9999842 34556877889999999999999999742211112222 34566789999999 8899998
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=295.78 Aligned_cols=284 Identities=17% Similarity=0.123 Sum_probs=213.5
Q ss_pred EEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEEccc
Q 020608 9 CVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFHLAS 86 (323)
Q Consensus 9 lItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih~a~ 86 (323)
||||||||||++|++.|+++|++|+++.+. ..+|++|.+++.++++ ++|+|||||+
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~ 58 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH----------------------KELDLTRQADVEAFFAKEKPTYVILAAA 58 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc----------------------ccCCCCCHHHHHHHHhccCCCEEEEeee
Confidence 699999999999999999999988765332 1589999999999887 5799999999
Q ss_pred CCccC-CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC-chHH
Q 020608 87 PCIVD-KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI-WYPL 164 (323)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~Y~~ 164 (323)
..... .....+...+++|+.++.+++++|++.+++++|++||+.+ |+... ..+++|+++... +..+.+ +|+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~v-yg~~~---~~~~~E~~~~~~--~~~p~~~~Y~~ 132 (306)
T PLN02725 59 KVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCI-YPKFA---PQPIPETALLTG--PPEPTNEWYAI 132 (306)
T ss_pred eecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceee-cCCCC---CCCCCHHHhccC--CCCCCcchHHH
Confidence 75432 2334566789999999999999999999999999999854 54332 557888764321 111223 4999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC---CchhHHHH----HHHHcCCCCC--c--cCcCCCcccHHHHH
Q 020608 165 SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT---LNASMLML----LRLLQGCTDT--Y--ENFFMGSVHFKDVA 233 (323)
Q Consensus 165 sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~---~~~~~~~~----~~~~~g~~~~--~--~~~~~~~i~v~D~a 233 (323)
+|.++|.+++.+.+.++++++++||+.+|||+.... ......++ .+...+.+.. + +.+.++|+|++|+|
T Consensus 133 sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~ 212 (306)
T PLN02725 133 AKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLA 212 (306)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHH
Confidence 999999999999888899999999999999975321 11112222 2233455433 2 34456899999999
Q ss_pred HHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc-cCHHHHHHH
Q 020608 234 LAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQIIKD 311 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~ 311 (323)
++++.+++.....+.||++ ++.+++.|+++.+.+.++...................+|++|++++||+| ++++++|++
T Consensus 213 ~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~l~~ 292 (306)
T PLN02725 213 DAVVFLMRRYSGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLRSLGWDPKFSLKDGLQE 292 (306)
T ss_pred HHHHHHHhccccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHHHhCCCCCCCHHHHHHH
Confidence 9999999876555678885 67899999999999988642111111122222335678999997799999 899999999
Q ss_pred HHHHHHHcC
Q 020608 312 SVESLKAKG 320 (323)
Q Consensus 312 ~~~~~~~~~ 320 (323)
+++|++++.
T Consensus 293 ~~~~~~~~~ 301 (306)
T PLN02725 293 TYKWYLENY 301 (306)
T ss_pred HHHHHHhhh
Confidence 999999874
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=279.22 Aligned_cols=307 Identities=21% Similarity=0.188 Sum_probs=245.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC-CcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL-SDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGV 81 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 81 (323)
.++||||||+||||+|.+.+|+++|++|++++.-. .-.....+..++...+..+.++.+|++|.+.++++|+ .+|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 47999999999999999999999999999987422 2234445555554445789999999999999999998 67999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCC-hhhhccCCC
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTD-EEYCRQNEI 160 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~ 160 (323)
+|+|+...++.+..++..++.+|+.|+.++++.+++++++.+|+.||+ .+|+.+. ..|++|+++.. |- +
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssa-tvYG~p~---~ip~te~~~t~~p~------~ 151 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSA-TVYGLPT---KVPITEEDPTDQPT------N 151 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecce-eeecCcc---eeeccCcCCCCCCC------C
Confidence 999999988888888999999999999999999999999999999998 6666655 67999999887 43 7
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccC--CCCCCCCc------hhHHHHHHHHc---------CCCCC--ccC
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMG--PVIPPTLN------ASMLMLLRLLQ---------GCTDT--YEN 221 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G--~~~~~~~~------~~~~~~~~~~~---------g~~~~--~~~ 221 (323)
+|+.+|...|+++..+...++..++.+|.++++| |..+.... ........... |.+.. .|+
T Consensus 152 pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~dgt 231 (343)
T KOG1371|consen 152 PYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDGT 231 (343)
T ss_pred cchhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccccCCC
Confidence 8999999999999999988899999999999999 43221110 00001111111 22222 456
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCC---CccEEE-EcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-h
Q 020608 222 FFMGSVHFKDVALAHILVYENPSA---CGRHLC-VEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-M 296 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 296 (323)
..+++||+-|.|+..+.+++.... .++||+ ++.++++.+++.+++++.|........+.+..+......+++++ +
T Consensus 232 ~vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~a~~ 311 (343)
T KOG1371|consen 232 IVRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSKAQR 311 (343)
T ss_pred eeecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHHHHH
Confidence 677899999999999999987554 235897 57889999999999999975422223333556777788999999 9
Q ss_pred hhCCcc-cCHHHHHHHHHHHHHHcCC
Q 020608 297 DLGLQF-IPMDQIIKDSVESLKAKGF 321 (323)
Q Consensus 297 ~lG~~~-~~~~~~l~~~~~~~~~~~~ 321 (323)
+|||++ +++++++++.++|..++.+
T Consensus 312 elgwk~~~~iee~c~dlw~W~~~np~ 337 (343)
T KOG1371|consen 312 ELGWKAKYGLQEMLKDLWRWQKQNPS 337 (343)
T ss_pred HhCCccccCHHHHHHHHHHHHhcCCC
Confidence 999999 9999999999999998865
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=294.09 Aligned_cols=284 Identities=19% Similarity=0.192 Sum_probs=204.5
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC---HhH-HHHHhc-----CC
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD---YDA-IAAAVT-----GC 78 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~~-~~~~~~-----~~ 78 (323)
|||||||||||++|+++|+++|++++++.|+........ .+..+|+.| .++ ++.+++ ++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 69 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV------------NLVDLDIADYMDKEDFLAQIMAGDDFGDI 69 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHHH------------hhhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence 799999999999999999999998777777653321100 112344444 333 333432 68
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
|+|||+|+..... . .+....++.|+.++.+++++|++.++ +|||+||.++ |+... ..+++|+.+..|.
T Consensus 70 d~Vih~A~~~~~~-~-~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~v-yg~~~---~~~~~E~~~~~p~----- 137 (308)
T PRK11150 70 EAIFHEGACSSTT-E-WDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAAT-YGGRT---DDFIEEREYEKPL----- 137 (308)
T ss_pred cEEEECceecCCc-C-CChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHH-hCcCC---CCCCccCCCCCCC-----
Confidence 9999999864432 2 23455789999999999999999886 7999999954 54432 3356777665554
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc---hhHHHHHHHHcCCCCC-c-cC--cCCCcccHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN---ASMLMLLRLLQGCTDT-Y-EN--FFMGSVHFKD 231 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~---~~~~~~~~~~~g~~~~-~-~~--~~~~~i~v~D 231 (323)
++|+.+|.++|++++.++.+++++++++||+++|||+...... ....+..++.+|.+.. . ++ ..++|+|++|
T Consensus 138 -~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D 216 (308)
T PRK11150 138 -NVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGD 216 (308)
T ss_pred -CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHH
Confidence 6799999999999999988889999999999999998643221 1122335566666443 2 33 3577999999
Q ss_pred HHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCC---CCCccccccchhHhhhCCcc--cCH
Q 020608 232 VALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQ---PGLLRTKDGAKKLMDLGLQF--IPM 305 (323)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lG~~~--~~~ 305 (323)
+|++++.+++.. .++.||++ ++++|+.|+++.+.+.++...+.....+.. .......+|++|++++||+| +++
T Consensus 217 ~a~a~~~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~g~~p~~~~~ 295 (308)
T PRK11150 217 VAAVNLWFWENG-VSGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDKLKGRYQAFTQADLTKLRAAGYDKPFKTV 295 (308)
T ss_pred HHHHHHHHHhcC-CCCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccccccccceecccCHHHHHhcCCCCCCCCH
Confidence 999999998764 35689985 677999999999999886422221111111 11223578999997789997 499
Q ss_pred HHHHHHHHHHHH
Q 020608 306 DQIIKDSVESLK 317 (323)
Q Consensus 306 ~~~l~~~~~~~~ 317 (323)
+++|+++++|+.
T Consensus 296 ~~gl~~~~~~~~ 307 (308)
T PRK11150 296 AEGVAEYMAWLN 307 (308)
T ss_pred HHHHHHHHHHhh
Confidence 999999999975
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=289.33 Aligned_cols=274 Identities=17% Similarity=0.073 Sum_probs=208.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
|+||||||+||||++|+++|+++| +|++++|.. ..+.+|++|.+.+.++++ ++|+|||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~-------------------~~~~~Dl~d~~~~~~~~~~~~~D~Vih 60 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHS-------------------TDYCGDFSNPEGVAETVRKIRPDVIVN 60 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEecccc-------------------ccccCCCCCHHHHHHHHHhcCCCEEEE
Confidence 489999999999999999999999 798887742 124689999999999888 5899999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
||+...+..+..++...+++|+.++.+++++|++.++ ++||+||..+|.+. . ..+++|+++..|. +.|+
T Consensus 61 ~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~-~---~~p~~E~~~~~P~------~~Yg 129 (299)
T PRK09987 61 AAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGT-G---DIPWQETDATAPL------NVYG 129 (299)
T ss_pred CCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCC-C---CCCcCCCCCCCCC------CHHH
Confidence 9998776556667778889999999999999999985 89999998554333 2 4578898877665 7799
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCc----CCCcccHHHHHHHHHH
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENF----FMGSVHFKDVALAHIL 238 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~----~~~~i~v~D~a~~~~~ 238 (323)
.+|..+|.++..++ .+.+++||+++|||+.. .....++..+..+++.. ++++ ...+.+++|++.++..
T Consensus 130 ~sK~~~E~~~~~~~----~~~~ilR~~~vyGp~~~---~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~ 202 (299)
T PRK09987 130 ETKLAGEKALQEHC----AKHLIFRTSWVYAGKGN---NFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRV 202 (299)
T ss_pred HHHHHHHHHHHHhC----CCEEEEecceecCCCCC---CHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999987653 46799999999999743 22334455555565544 4442 2335667788888887
Q ss_pred hhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCC--CCC-----CCC----CCCCCCCccccccchhH-hhhCCcccCH
Q 020608 239 VYENPSACGRHLCV-EAISHYGDFVAKVAELYPEY--DIP-----RLP----KDTQPGLLRTKDGAKKL-MDLGLQFIPM 305 (323)
Q Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~--~~~-----~~~----~~~~~~~~~~~~~~~~~-~~lG~~~~~~ 305 (323)
++......|.||++ ++.+|+.|+++.+.+.++.. ..+ ... +.....+....+|++|+ +.+||+|++|
T Consensus 203 ~~~~~~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~~~ 282 (299)
T PRK09987 203 ALNKPEVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLPDW 282 (299)
T ss_pred hhccCCCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCccH
Confidence 77655455789985 67899999999997754211 110 000 11123445678899999 6699999999
Q ss_pred HHHHHHHHHHHH
Q 020608 306 DQIIKDSVESLK 317 (323)
Q Consensus 306 ~~~l~~~~~~~~ 317 (323)
+++|+++++.+.
T Consensus 283 ~~~l~~~~~~~~ 294 (299)
T PRK09987 283 QVGVKRMLTELF 294 (299)
T ss_pred HHHHHHHHHHHh
Confidence 999999997654
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=289.90 Aligned_cols=297 Identities=28% Similarity=0.258 Sum_probs=232.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC-CEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC-TGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-d~Vih~ 84 (323)
|+|||||||||||++|+++|+++|++|++++|......... .++.++.+|+++.+...++++.+ |+|||+
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~ 71 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDRDLVDELAKGVPDAVIHL 71 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc---------cccceeeecccchHHHHHHHhcCCCEEEEc
Confidence 34999999999999999999999999999999764433211 25788999999998888888888 999999
Q ss_pred ccCCccCCCCC-chhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCC-CCCChhhhccCCCch
Q 020608 85 ASPCIVDKVED-PQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDED-CWTDEEYCRQNEIWY 162 (323)
Q Consensus 85 a~~~~~~~~~~-~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~Y 162 (323)
|+......... ++...+++|+.++.+++++|++.++++|||.||.+.++.... ..+++|+ .+..|. ++|
T Consensus 72 aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~---~~~~~E~~~~~~p~------~~Y 142 (314)
T COG0451 72 AAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPP---PLPIDEDLGPPRPL------NPY 142 (314)
T ss_pred cccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCC---CCCcccccCCCCCC------CHH
Confidence 99876544333 456789999999999999999988999999888766665521 4478888 444443 479
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCCC-CC-cc--CcCCCcccHHHHHHHH
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGCT-DT-YE--NFFMGSVHFKDVALAH 236 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~-~~-~~--~~~~~~i~v~D~a~~~ 236 (323)
+.+|.++|.++..+.+.++++++++||+.+|||+...... .....+..+..+.+ .. .+ ...++++|++|+|+++
T Consensus 143 g~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 222 (314)
T COG0451 143 GVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADAL 222 (314)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHH
Confidence 9999999999999998789999999999999998765421 22233455666765 33 23 3345799999999999
Q ss_pred HHhhcCCCCCccEEEEc-C-ccCHHHHHHHHHHHCCCCCCC-CCCC--CCCCCCccccccchhH-hhhCCcc-cCHHHHH
Q 020608 237 ILVYENPSACGRHLCVE-A-ISHYGDFVAKVAELYPEYDIP-RLPK--DTQPGLLRTKDGAKKL-MDLGLQF-IPMDQII 309 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~~~-~-~~~~~e~~~~i~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l 309 (323)
+.+++++... .||+++ . .++++|+++.+.+.++..... .... ..........+|.+++ ++|||.| .++++++
T Consensus 223 ~~~~~~~~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i 301 (314)
T COG0451 223 LLALENPDGG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEGL 301 (314)
T ss_pred HHHHhCCCCc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCHHHHH
Confidence 9999987776 899864 4 799999999999999764321 1111 1223344678899999 8999999 8999999
Q ss_pred HHHHHHHHHcCC
Q 020608 310 KDSVESLKAKGF 321 (323)
Q Consensus 310 ~~~~~~~~~~~~ 321 (323)
.++++|+.....
T Consensus 302 ~~~~~~~~~~~~ 313 (314)
T COG0451 302 ADTLEWLLKKLE 313 (314)
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=276.94 Aligned_cols=300 Identities=21% Similarity=0.146 Sum_probs=219.0
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEEc
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFHL 84 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih~ 84 (323)
+|||||||||||++++++|+++|++|+++.|...... ........ ..+++++.+|+++.+++.++++ ++|+|||+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ 77 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSP--EALKRGER-ITRVTFVEGDLRDRELLDRLFEEHKIDAVIHF 77 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccch--hhhhhhcc-ccceEEEECCCCCHHHHHHHHHhCCCcEEEEC
Confidence 6899999999999999999999999998765432211 11111111 1157788999999999999887 68999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 164 (323)
|+..........+...++.|+.++.++++++.+.+++++|++||.+. |+... ..+++|+++..+. +.|+.
T Consensus 78 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~-~g~~~---~~~~~e~~~~~~~------~~y~~ 147 (328)
T TIGR01179 78 AGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAV-YGEPS---SIPISEDSPLGPI------NPYGR 147 (328)
T ss_pred ccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhh-cCCCC---CCCccccCCCCCC------CchHH
Confidence 99765444445566788999999999999999988889999999844 44332 4467888766543 67999
Q ss_pred HHHHHHHHHHHHHHh-CCccEEEEcCCCccCCCCCCC-------CchhHHHHHHHHc--CCCC---------CccCcCCC
Q 020608 165 SKTLAEKAAWEFAKE-KGLDVVVVNPGTVMGPVIPPT-------LNASMLMLLRLLQ--GCTD---------TYENFFMG 225 (323)
Q Consensus 165 sK~~~e~~~~~~~~~-~~~~~~~~Rp~~v~G~~~~~~-------~~~~~~~~~~~~~--g~~~---------~~~~~~~~ 225 (323)
+|..+|.+++.++++ .+++++++||+.+|||..... .......+..... ..+. ..++..++
T Consensus 148 sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (328)
T TIGR01179 148 SKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRD 227 (328)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEe
Confidence 999999999998877 799999999999999853211 1111111222222 1111 12334567
Q ss_pred cccHHHHHHHHHHhhcCC---CCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCC
Q 020608 226 SVHFKDVALAHILVYENP---SACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGL 300 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~---~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~ 300 (323)
|||++|+|+++..++... ..++.||++ ++.+|+.|+++.+++.+|........+...........|++++ +.|||
T Consensus 228 ~v~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 307 (328)
T TIGR01179 228 YIHVMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRRELGW 307 (328)
T ss_pred eeeHHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHHHhCC
Confidence 999999999999998642 234569985 6789999999999999975321111111112223456799999 77999
Q ss_pred cc-cC-HHHHHHHHHHHHHHc
Q 020608 301 QF-IP-MDQIIKDSVESLKAK 319 (323)
Q Consensus 301 ~~-~~-~~~~l~~~~~~~~~~ 319 (323)
+| ++ ++++|+++++|+.+|
T Consensus 308 ~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 308 QPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred CCCcchHHHHHHHHHHHHhcC
Confidence 99 76 999999999999865
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=271.69 Aligned_cols=268 Identities=19% Similarity=0.125 Sum_probs=208.2
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC--CEEEEc
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC--TGVFHL 84 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d~Vih~ 84 (323)
+|||||||||||++++++|+++|++|+++.|+ .+|+.+.+.+.++++++ |+|||+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-----------------------~~d~~~~~~~~~~~~~~~~d~vi~~ 57 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS-----------------------QLDLTDPEALERLLRAIRPDAVVNT 57 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----------------------ccCCCCHHHHHHHHHhCCCCEEEEC
Confidence 58999999999999999999999999998773 48999999999999865 999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 164 (323)
|+..........+...+++|+.++.++++++++.+. +||++||.++|.+ .. ..+++|+++.++. +.|+.
T Consensus 58 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~-~~---~~~~~E~~~~~~~------~~Y~~ 126 (287)
T TIGR01214 58 AAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDG-EG---KRPYREDDATNPL------NVYGQ 126 (287)
T ss_pred CccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecC-CC---CCCCCCCCCCCCc------chhhH
Confidence 997654334445677889999999999999998874 8999999855433 22 4578888776554 67999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 165 SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 165 sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+|..+|.+++.+ +.+++++||+.+|||+... .....++..+..+.+.. .+++..+++|++|+|+++..+++.+
T Consensus 127 ~K~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 200 (287)
T TIGR01214 127 SKLAGEQAIRAA----GPNALIVRTSWLYGGGGGR--NFVRTMLRLAGRGEELRVVDDQIGSPTYAKDLARVIAALLQRL 200 (287)
T ss_pred HHHHHHHHHHHh----CCCeEEEEeeecccCCCCC--CHHHHHHHHhhcCCCceEecCCCcCCcCHHHHHHHHHHHHhhc
Confidence 999999998654 6899999999999998431 22333455555555544 5666678999999999999999876
Q ss_pred -CCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCC----CC-------CCCCCCCccccccchhH-hhhCCcccCHHHHH
Q 020608 244 -SACGRHLCV-EAISHYGDFVAKVAELYPEYDIPR----LP-------KDTQPGLLRTKDGAKKL-MDLGLQFIPMDQII 309 (323)
Q Consensus 244 -~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~-~~lG~~~~~~~~~l 309 (323)
..++.||++ ++.+++.|+++.+++.++...... .. ...........+|++|+ +.|||.+++++++|
T Consensus 201 ~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~~~~~~~~l 280 (287)
T TIGR01214 201 ARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTPLPHWREAL 280 (287)
T ss_pred cCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCCCccHHHHH
Confidence 356779975 678999999999999987532110 00 00111223467999999 77899559999999
Q ss_pred HHHHH
Q 020608 310 KDSVE 314 (323)
Q Consensus 310 ~~~~~ 314 (323)
+++++
T Consensus 281 ~~~~~ 285 (287)
T TIGR01214 281 RAYLQ 285 (287)
T ss_pred HHHHh
Confidence 98875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=275.55 Aligned_cols=287 Identities=18% Similarity=0.109 Sum_probs=209.6
Q ss_pred EEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----CCCEEE
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----GCTGVF 82 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~Vi 82 (323)
|||||||||||+++++.|+++|+ +|+++.|..... . ...+ ....+.+|+++.+.++.+.+ ++|+||
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~---~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~D~vv 71 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-K---FLNL-----ADLVIADYIDKEDFLDRLEKGAFGKIEAIF 71 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-h---hhhh-----hheeeeccCcchhHHHHHHhhccCCCCEEE
Confidence 69999999999999999999998 788887654322 1 1111 11346788888887777664 799999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+|+.... ...++...+++|+.++.+++++|++.++ +||++||.+ +|+.. ..+++|+++.. .+.+.|
T Consensus 72 h~A~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~-vy~~~----~~~~~e~~~~~-----~p~~~Y 138 (314)
T TIGR02197 72 HQGACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAA-TYGDG----EAGFREGRELE-----RPLNVY 138 (314)
T ss_pred ECccccCc--cccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHH-hcCCC----CCCcccccCcC-----CCCCHH
Confidence 99997433 3345677889999999999999998886 899999984 55543 23455655421 123679
Q ss_pred HHHHHHHHHHHHHHHHh--CCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCC---------ccCcCCCccc
Q 020608 163 PLSKTLAEKAAWEFAKE--KGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDT---------YENFFMGSVH 228 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~--~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~---------~~~~~~~~i~ 228 (323)
+.+|..+|.+++.+... .+++++++||+.+|||+..... .....++..+..+.+.. .|.+.++|+|
T Consensus 139 ~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 218 (314)
T TIGR02197 139 GYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVY 218 (314)
T ss_pred HHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEE
Confidence 99999999999875432 3679999999999999864321 22334455666665442 1334467999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC-CCCCCCCCC---CCCccccccchhH-hhhCCcc
Q 020608 229 FKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD-IPRLPKDTQ---PGLLRTKDGAKKL-MDLGLQF 302 (323)
Q Consensus 229 v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~-~~lG~~~ 302 (323)
++|+++++..++.. ..++.||++ ++++|+.|+++.+.+.++... +........ .......+|++|+ +.+||+|
T Consensus 219 v~D~a~~i~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~p 297 (314)
T TIGR02197 219 VKDVVDVNLWLLEN-GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGYYGP 297 (314)
T ss_pred HHHHHHHHHHHHhc-ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhcCCCC
Confidence 99999999999987 456789985 678999999999999987422 111111111 1122457899999 7789999
Q ss_pred -cCHHHHHHHHHHHHH
Q 020608 303 -IPMDQIIKDSVESLK 317 (323)
Q Consensus 303 -~~~~~~l~~~~~~~~ 317 (323)
++++++|+++++|+.
T Consensus 298 ~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 298 FTTLEEGVKDYVQWLL 313 (314)
T ss_pred cccHHHHHHHHHHHHh
Confidence 999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=270.58 Aligned_cols=250 Identities=30% Similarity=0.299 Sum_probs=186.5
Q ss_pred EEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEccc
Q 020608 9 CVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLAS 86 (323)
Q Consensus 9 lItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a~ 86 (323)
|||||+||||++|+++|+++| ++|.+++|.+..... ...... ....++.+|++|.+++.++++++|+|||+|+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~-~~~~~~----~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa 75 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL-KDLQKS----GVKEYIQGDITDPESLEEALEGVDVVFHTAA 75 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc-hhhhcc----cceeEEEeccccHHHHHHHhcCCceEEEeCc
Confidence 699999999999999999999 799999887644321 111111 1234899999999999999999999999999
Q ss_pred CCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHH
Q 020608 87 PCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK 166 (323)
Q Consensus 87 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK 166 (323)
...... .......+++|+.||+|++++|++.++++|||+||.+++..+....+-...+|+.+.. ..+.++|+.||
T Consensus 76 ~~~~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~----~~~~~~Y~~SK 150 (280)
T PF01073_consen 76 PVPPWG-DYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYP----SSPLDPYAESK 150 (280)
T ss_pred cccccC-cccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCccc----ccccCchHHHH
Confidence 764422 4566789999999999999999999999999999998776533211112235554432 23557899999
Q ss_pred HHHHHHHHHHHH---h--CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC-CCcc--CcCCCcccHHHHHHHHHH
Q 020608 167 TLAEKAAWEFAK---E--KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT-DTYE--NFFMGSVHFKDVALAHIL 238 (323)
Q Consensus 167 ~~~e~~~~~~~~---~--~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~-~~~~--~~~~~~i~v~D~a~~~~~ 238 (323)
..+|++++.+.. + ..+..++|||+.||||++..... .+......|.. ...+ ....+++|++|+|.+++.
T Consensus 151 ~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~---~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvl 227 (280)
T PF01073_consen 151 ALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVP---RLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVL 227 (280)
T ss_pred HHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccc---hhhHHHHhcccceeecCCCceECcEeHHHHHHHHHH
Confidence 999999998764 1 25999999999999998654322 22333334422 2233 345779999999999998
Q ss_pred hhcC-------CCCCcc-EEEE-cCccC-HHHHHHHHHHHCCC
Q 020608 239 VYEN-------PSACGR-HLCV-EAISH-YGDFVAKVAELYPE 271 (323)
Q Consensus 239 ~~~~-------~~~~~~-~~~~-~~~~~-~~e~~~~i~~~~~~ 271 (323)
+++. ....|+ |+++ ++++. +.|+.+.+.+.+|.
T Consensus 228 A~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~ 270 (280)
T PF01073_consen 228 AAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGY 270 (280)
T ss_pred HHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCC
Confidence 7652 223455 8886 56787 99999999999975
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=277.68 Aligned_cols=272 Identities=19% Similarity=0.125 Sum_probs=205.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+++|+||||||+||||++++++|+++| ++|++++|+..... .....+. ..+++++.+|++|.+.+.++++++|+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~--~~~~~~~--~~~~~~v~~Dl~d~~~l~~~~~~iD~ 77 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW--EMQQKFP--APCLRFFIGDVRDKERLTRALRGVDY 77 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHH--HHHHHhC--CCcEEEEEccCCCHHHHHHHHhcCCE
Confidence 367999999999999999999999986 78999988643221 1111111 24688999999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|||+||....+....++.+.+++|+.++.++++++++.++++||++||..... +.+
T Consensus 78 Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~~~------------------------p~~ 133 (324)
T TIGR03589 78 VVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAAN------------------------PIN 133 (324)
T ss_pred EEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCC------------------------CCC
Confidence 99999976544445566789999999999999999999889999999963211 114
Q ss_pred chHHHHHHHHHHHHHHHH---hCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC-CCC--ccCcCCCcccHHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAK---EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC-TDT--YENFFMGSVHFKDVAL 234 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~---~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~--~~~~~~~~i~v~D~a~ 234 (323)
+|+.+|.++|.+++.++. .+|++++++|||++|||+.. ....+...+..+. +.. .+...++|+|++|+|+
T Consensus 134 ~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~----~i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a~ 209 (324)
T TIGR03589 134 LYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS----VVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVN 209 (324)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC----cHHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHHH
Confidence 599999999999887543 46999999999999998632 2333444444554 233 2444567999999999
Q ss_pred HHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CccccccchhH-hhhCCcc-cCHHHHHH
Q 020608 235 AHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPG-LLRTKDGAKKL-MDLGLQF-IPMDQIIK 310 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~lG~~~-~~~~~~l~ 310 (323)
+++.+++....+..|+.++..+++.|+++.+.+..+....+. +... .....+|++++ +.|||+| ++++++++
T Consensus 210 a~~~al~~~~~~~~~~~~~~~~sv~el~~~i~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~lg~~~~~~l~~~~~ 284 (324)
T TIGR03589 210 FVLKSLERMLGGEIFVPKIPSMKITDLAEAMAPECPHKIVGI----RPGEKLHEVMITEDDARHTYELGDYYAILPSIS 284 (324)
T ss_pred HHHHHHhhCCCCCEEccCCCcEEHHHHHHHHHhhCCeeEeCC----CCCchhHhhhcChhhhhhhcCCCCeEEEccccc
Confidence 999999865333347656677999999999998764322111 1112 23366899999 8899999 99999986
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=248.46 Aligned_cols=267 Identities=20% Similarity=0.158 Sum_probs=222.4
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEEc
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFHL 84 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih~ 84 (323)
+|||||++|++|++|++.|. .+++|+.++|. ..|++|.+.+.++++ ++|+|||+
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~-----------------------~~Ditd~~~v~~~i~~~~PDvVIn~ 57 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRA-----------------------ELDITDPDAVLEVIRETRPDVVINA 57 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCc-----------------------cccccChHHHHHHHHhhCCCEEEEC
Confidence 49999999999999999998 77899998774 399999999999998 56999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 164 (323)
|+...+...+.+++..+.+|..++.+++++|++.|. ++||+||..++.+.. ..++.|+++++|. +.||.
T Consensus 58 AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFDG~~----~~~Y~E~D~~~P~------nvYG~ 126 (281)
T COG1091 58 AAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFDGEK----GGPYKETDTPNPL------NVYGR 126 (281)
T ss_pred ccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEecCCC----CCCCCCCCCCCCh------hhhhH
Confidence 999999889999999999999999999999999985 999999998877765 5789999999887 88999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 165 SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 165 sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
||.++|..++.+ +.+..++|.+++||... .++...++.....|+++. +.++..+++++.|+|+++..++...
T Consensus 127 sKl~GE~~v~~~----~~~~~I~Rtswv~g~~g---~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~ 199 (281)
T COG1091 127 SKLAGEEAVRAA----GPRHLILRTSWVYGEYG---NNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKE 199 (281)
T ss_pred HHHHHHHHHHHh----CCCEEEEEeeeeecCCC---CCHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhcc
Confidence 999999998644 57899999999999864 233334455556666665 6778888999999999999999988
Q ss_pred CCCccEEEEc-CccCHHHHHHHHHHHCCCCC----CCCCC--CCCCCCCccccccchhH-hhhCCcccCHHHHHHHHHHH
Q 020608 244 SACGRHLCVE-AISHYGDFVAKVAELYPEYD----IPRLP--KDTQPGLLRTKDGAKKL-MDLGLQFIPMDQIIKDSVES 315 (323)
Q Consensus 244 ~~~~~~~~~~-~~~~~~e~~~~i~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~-~~lG~~~~~~~~~l~~~~~~ 315 (323)
...+.||+++ +.+||-|+++.|.+..+... ..... +...+.+....+|+.|+ +.+|+.+++++++++++++.
T Consensus 200 ~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~~w~~~l~~~~~~ 279 (281)
T COG1091 200 KEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLPEWREALKALLDE 279 (281)
T ss_pred ccCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCccHHHHHHHHHhh
Confidence 8888999864 45799999999999986221 11111 22224455678999999 77899999999999998764
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=268.26 Aligned_cols=281 Identities=18% Similarity=0.142 Sum_probs=204.0
Q ss_pred CCceEEEe----ccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHH-----HHhhccCCCCCeEEEEccCCCHhHHHHH
Q 020608 4 EAEVVCVT----GGSGCIGSWLVSLLLERRYTVHATVKNLSDERETA-----HLKALEGADTRLRLFQIDLLDYDAIAAA 74 (323)
Q Consensus 4 ~~~~vlIt----GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (323)
++|+|||| |||||||++|+++|+++||+|+++.|+........ ....+. ..+++++.+|++|.+.+. .
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~~~-~ 127 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS--SAGVKTVWGDPADVKSKV-A 127 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh--hcCceEEEecHHHHHhhh-c
Confidence 56899999 99999999999999999999999999864321110 011111 125888999997733222 1
Q ss_pred hcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhh
Q 020608 75 VTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEY 154 (323)
Q Consensus 75 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~ 154 (323)
..++|+|||+++. +..++.+++++|++.++++|||+||.++ |+... ..+..|+++..|.
T Consensus 128 ~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~v-yg~~~---~~p~~E~~~~~p~- 186 (378)
T PLN00016 128 GAGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGV-YKKSD---EPPHVEGDAVKPK- 186 (378)
T ss_pred cCCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhh-cCCCC---CCCCCCCCcCCCc-
Confidence 2478999999753 1346889999999999999999999954 54432 3456777665442
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc---cCcCCCcccHHH
Q 020608 155 CRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY---ENFFMGSVHFKD 231 (323)
Q Consensus 155 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~i~v~D 231 (323)
. +|..+|.+++ +.+++++++||+++|||+.... ....++.++..+.+... +.+.++|+|++|
T Consensus 187 --------~-sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~~~~--~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~D 251 (378)
T PLN00016 187 --------A-GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGNNKD--CEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKD 251 (378)
T ss_pred --------c-hHHHHHHHHH----HcCCCeEEEeceeEECCCCCCc--hHHHHHHHHHcCCceeecCCCCeeeceecHHH
Confidence 2 8999998764 4689999999999999975432 22234556666766542 344567999999
Q ss_pred HHHHHHHhhcCCCC-CccEEEE-cCccCHHHHHHHHHHHCCCCC-CCCCCCCC---------CCCCccccccchhH-hhh
Q 020608 232 VALAHILVYENPSA-CGRHLCV-EAISHYGDFVAKVAELYPEYD-IPRLPKDT---------QPGLLRTKDGAKKL-MDL 298 (323)
Q Consensus 232 ~a~~~~~~~~~~~~-~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~-~~l 298 (323)
+|+++..+++++.. ++.||++ ++.+|+.|+++.+.+.+|... +....+.. +.....+..|++|+ ++|
T Consensus 252 va~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~~L 331 (378)
T PLN00016 252 LASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKEEL 331 (378)
T ss_pred HHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHHHhc
Confidence 99999999987644 4569986 567999999999999987532 11011110 01122345799999 889
Q ss_pred CCcc-cCHHHHHHHHHHHHHHcCCCC
Q 020608 299 GLQF-IPMDQIIKDSVESLKAKGFIS 323 (323)
Q Consensus 299 G~~~-~~~~~~l~~~~~~~~~~~~~~ 323 (323)
||+| ++++++|+++++|++.+|+++
T Consensus 332 Gw~p~~~l~egl~~~~~~~~~~~~~~ 357 (378)
T PLN00016 332 GWTPKFDLVEDLKDRYELYFGRGRDR 357 (378)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 9999 899999999999999999864
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=263.26 Aligned_cols=270 Identities=23% Similarity=0.212 Sum_probs=196.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
||||||||+|+||++|.++|.++|++|+++.|. ..|++|.+.+.++++ ++|+|||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-----------------------~~dl~d~~~~~~~~~~~~pd~Vin 57 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS-----------------------DLDLTDPEAVAKLLEAFKPDVVIN 57 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-----------------------CS-TTSHHHHHHHHHHH--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-----------------------hcCCCCHHHHHHHHHHhCCCeEec
Confidence 799999999999999999999999999998664 589999999999887 5899999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
||+...+..++.++...+++|+.++.+++++|.+.+. ++||+||..++.+.. ..+++|+++++|. +.||
T Consensus 58 ~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~~----~~~y~E~d~~~P~------~~YG 126 (286)
T PF04321_consen 58 CAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGDK----GGPYTEDDPPNPL------NVYG 126 (286)
T ss_dssp ------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SST----SSSB-TTS----S------SHHH
T ss_pred cceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCCc----ccccccCCCCCCC------CHHH
Confidence 9998877667778899999999999999999999985 999999997776653 6679999988776 8899
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhcC
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.+|+++|+.++... -+..|+|++.+||+.. ......++..+..++... ..+..+.++|++|+|+++..++++
T Consensus 127 ~~K~~~E~~v~~~~----~~~~IlR~~~~~g~~~---~~~~~~~~~~~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l~~~ 199 (286)
T PF04321_consen 127 RSKLEGEQAVRAAC----PNALILRTSWVYGPSG---RNFLRWLLRRLRQGEPIKLFDDQYRSPTYVDDLARVILELIEK 199 (286)
T ss_dssp HHHHHHHHHHHHH-----SSEEEEEE-SEESSSS---SSHHHHHHHHHHCTSEEEEESSCEE--EEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CCEEEEecceecccCC---CchhhhHHHHHhcCCeeEeeCCceeCCEEHHHHHHHHHHHHHh
Confidence 99999999997633 3899999999999932 233445566666777665 566777899999999999999986
Q ss_pred CCC----CccEEEE-cCccCHHHHHHHHHHHCCCCC-----CCCCC-CCCCCCCccccccchhH-hhhCCcccCHHHHHH
Q 020608 243 PSA----CGRHLCV-EAISHYGDFVAKVAELYPEYD-----IPRLP-KDTQPGLLRTKDGAKKL-MDLGLQFIPMDQIIK 310 (323)
Q Consensus 243 ~~~----~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~-~~lG~~~~~~~~~l~ 310 (323)
... .|.||++ ++.+|+.|+++.+++.++... ++... ......+....+|++|+ +.+|+++++++++|+
T Consensus 200 ~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~~~~~~l~ 279 (286)
T PF04321_consen 200 NLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPPPWREGLE 279 (286)
T ss_dssp HHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS---BHHHHHH
T ss_pred cccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCcCHHHHHH
Confidence 543 5889974 678999999999999986422 11111 11223445679999999 777999999999999
Q ss_pred HHHHHH
Q 020608 311 DSVESL 316 (323)
Q Consensus 311 ~~~~~~ 316 (323)
++++-+
T Consensus 280 ~~~~~~ 285 (286)
T PF04321_consen 280 ELVKQY 285 (286)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=253.00 Aligned_cols=303 Identities=25% Similarity=0.271 Sum_probs=221.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++.+++||||+||+|++|+++|++++ .+|++++..+............ ....++++.+|++|...+..+++++ .|
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~--~~~~v~~~~~D~~~~~~i~~a~~~~-~V 79 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF--RSGRVTVILGDLLDANSISNAFQGA-VV 79 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc--cCCceeEEecchhhhhhhhhhccCc-eE
Confidence 67899999999999999999999998 7999998876422221111111 2457899999999999999999999 88
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
+|||+........++.+..+++|+.||.+++++|++.+++++||+||.+++.+... ...-+|+.+. | ..+.+.
T Consensus 80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~---~~n~~E~~p~-p---~~~~d~ 152 (361)
T KOG1430|consen 80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEP---IINGDESLPY-P---LKHIDP 152 (361)
T ss_pred EEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCee---cccCCCCCCC-c---cccccc
Confidence 88888655544566788899999999999999999999999999999977776542 1233444332 2 234467
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-cc--CcCCCcccHHHHHHHHHH
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YE--NFFMGSVHFKDVALAHIL 238 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~--~~~~~~i~v~D~a~~~~~ 238 (323)
|+.||..+|.+++..+...++..+++||..||||++... ...+...+..|.... .+ ....++++++.+|.+++.
T Consensus 153 Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~---~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahil 229 (361)
T KOG1430|consen 153 YGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRL---LPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHIL 229 (361)
T ss_pred cchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccc---cHHHHHHHHccCceEEeeccccccceEEechhHHHHHH
Confidence 999999999999988765679999999999999997643 233444555565443 23 345569999999988886
Q ss_pred hhc-----CCCCCcc-EEEE-cCccCHHHHHHHHHHHCCCCC-----CCCCC---------------C-CCCC-------
Q 020608 239 VYE-----NPSACGR-HLCV-EAISHYGDFVAKVAELYPEYD-----IPRLP---------------K-DTQP------- 283 (323)
Q Consensus 239 ~~~-----~~~~~~~-~~~~-~~~~~~~e~~~~i~~~~~~~~-----~~~~~---------------~-~~~~------- 283 (323)
+.. .+...|+ |+++ +.++..-++...+.+.+|... +|.+. . ..+.
T Consensus 230 A~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~~v~ 309 (361)
T KOG1430|consen 230 AARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRFRVA 309 (361)
T ss_pred HHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChhhee
Confidence 653 3445666 7775 566655555558888775321 11110 0 0100
Q ss_pred -CCccccccchhH-hhhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 284 -GLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 284 -~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
......+|.+|+ ++|||+| .++++++.+++.|..+.
T Consensus 310 ~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~ 348 (361)
T KOG1430|consen 310 LLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASE 348 (361)
T ss_pred eeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhh
Confidence 011358899999 8999999 99999999999987654
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=250.88 Aligned_cols=228 Identities=27% Similarity=0.303 Sum_probs=186.7
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCEEEEcc
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTGVFHLA 85 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~Vih~a 85 (323)
|||||||||||++|+++|+++|++|+.+.|+..+....... .+++++.+|+.|.+.++++++. +|+|||+|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~-------~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK-------LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH-------TTEEEEESETTSHHHHHHHHHHHTESEEEEEB
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc-------ceEEEEEeeccccccccccccccCceEEEEee
Confidence 79999999999999999999999999999887544332221 1688999999999999999985 49999999
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+....+.........++.|+.++.++++++++.+++++|++||+ ..|+... ..+++|+.+..|. ++|+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~-~~y~~~~---~~~~~e~~~~~~~------~~Y~~~ 143 (236)
T PF01370_consen 74 AFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSA-SVYGDPD---GEPIDEDSPINPL------SPYGAS 143 (236)
T ss_dssp SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEG-GGGTSSS---SSSBETTSGCCHS------SHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-ccccccc---ccccccccccccc------cccccc
Confidence 97532223356678899999999999999999998999999997 4554443 6678999887665 779999
Q ss_pred HHHHHHHHHHHHHhCCccEEEEcCCCccCCC--CCCCCchhHHHHHHHHcCCCCC---ccCcCCCcccHHHHHHHHHHhh
Q 020608 166 KTLAEKAAWEFAKEKGLDVVVVNPGTVMGPV--IPPTLNASMLMLLRLLQGCTDT---YENFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 166 K~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~--~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~i~v~D~a~~~~~~~ 240 (323)
|..+|++++.+.++++++++++||+++|||. ..........++.++.+|++.. .+++.++|+|++|+|++++.++
T Consensus 144 K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 223 (236)
T PF01370_consen 144 KRAAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAAL 223 (236)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHH
Confidence 9999999999998889999999999999998 1122334456778888888654 3455677999999999999999
Q ss_pred cCCC-CCccEEEE
Q 020608 241 ENPS-ACGRHLCV 252 (323)
Q Consensus 241 ~~~~-~~~~~~~~ 252 (323)
+++. .++.||++
T Consensus 224 ~~~~~~~~~yNig 236 (236)
T PF01370_consen 224 ENPKAAGGIYNIG 236 (236)
T ss_dssp HHSCTTTEEEEES
T ss_pred hCCCCCCCEEEeC
Confidence 9888 66779874
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=224.86 Aligned_cols=288 Identities=20% Similarity=0.199 Sum_probs=220.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 80 (323)
||+|||||++|.+|+++++.+.+.|. +-.++.-+ -.+|+++.++.+++|+ +..+
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s----------------------kd~DLt~~a~t~~lF~~ekPth 58 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS----------------------KDADLTNLADTRALFESEKPTH 58 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc----------------------ccccccchHHHHHHHhccCCce
Confidence 58999999999999999999999876 33333222 1599999999999998 5799
Q ss_pred EEEcccCCcc-CCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 81 VFHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 81 Vih~a~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
|||+|++... -.+...+.+.+..|+.-.-|++..|.+.|+++++++.|+ ..++.-. ..||+|+...+.+ +....
T Consensus 59 VIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclSt-CIfPdkt---~yPIdEtmvh~gp-phpsN 133 (315)
T KOG1431|consen 59 VIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLST-CIFPDKT---SYPIDETMVHNGP-PHPSN 133 (315)
T ss_pred eeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcce-eecCCCC---CCCCCHHHhccCC-CCCCc
Confidence 9999998643 224556678999999999999999999999999999998 4555443 6788887655442 22223
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHH----HcCC-CCC-ccCc--CCCccc
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRL----LQGC-TDT-YENF--FMGSVH 228 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~----~~g~-~~~-~~~~--~~~~i~ 228 (323)
.+|+.+|+++.-..+.|+.++|-..+.+-|.++|||.++... ...+.++.++ ..|. +.. +|.+ .+.|+|
T Consensus 134 ~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiy 213 (315)
T KOG1431|consen 134 FGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIY 213 (315)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhh
Confidence 569999999998889999999999999999999999876543 2223333332 2333 222 5544 456999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEE-cC--ccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc--c
Q 020608 229 FKDVALAHILVYENPSACGRHLCV-EA--ISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF--I 303 (323)
Q Consensus 229 v~D~a~~~~~~~~~~~~~~~~~~~-~~--~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~--~ 303 (323)
++|+|+++++++++-+.-.-.|++ ++ .+|++|+++++.+.++-..--.+....++.......|++|++.|+|.| +
T Consensus 214 s~DLA~l~i~vlr~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~sl~pd~~ft 293 (315)
T KOG1431|consen 214 SDDLADLFIWVLREYEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLRSLLPDFKFT 293 (315)
T ss_pred HhHHHHHHHHHHHhhcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHHHhCCCcccC
Confidence 999999999999875543345654 55 799999999999998543222344444456667789999999999998 5
Q ss_pred CHHHHHHHHHHHHHHc
Q 020608 304 PMDQIIKDSVESLKAK 319 (323)
Q Consensus 304 ~~~~~l~~~~~~~~~~ 319 (323)
+|+++|.++++||.+|
T Consensus 294 ~l~~ai~~t~~Wy~~N 309 (315)
T KOG1431|consen 294 PLEQAISETVQWYLDN 309 (315)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 5999999999999875
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=266.59 Aligned_cols=248 Identities=20% Similarity=0.151 Sum_probs=188.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|+|||||||||++++++|+++|++|++++|+..+. . ..+++++.+|++|.+++.++++++|+|||+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~--------~---~~~v~~v~gDL~D~~~l~~al~~vD~VVHlA 69 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS--------W---PSSADFIAADIRDATAVESAMTGADVVAHCA 69 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh--------c---ccCceEEEeeCCCHHHHHHHHhCCCEEEECC
Confidence 4899999999999999999999999999999864211 1 1257889999999999999999999999999
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+.... .+++|+.++.++++++++.++++||++||.+
T Consensus 70 a~~~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~----------------------------------- 105 (854)
T PRK05865 70 WVRGR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH----------------------------------- 105 (854)
T ss_pred Ccccc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-----------------------------------
Confidence 75321 5689999999999999999999999999861
Q ss_pred HHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC--cCCCcccHHHHHHHHHHhhcCC
Q 020608 166 KTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN--FFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 166 K~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
|..+|.++. +++++++++||+++|||+.. .++..+........+. ..++|||++|+|+++..+++..
T Consensus 106 K~aaE~ll~----~~gl~~vILRp~~VYGP~~~-------~~i~~ll~~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~ 174 (854)
T PRK05865 106 QPRVEQMLA----DCGLEWVAVRCALIFGRNVD-------NWVQRLFALPVLPAGYADRVVQVVHSDDAQRLLVRALLDT 174 (854)
T ss_pred HHHHHHHHH----HcCCCEEEEEeceEeCCChH-------HHHHHHhcCceeccCCCCceEeeeeHHHHHHHHHHHHhCC
Confidence 777787763 46899999999999999621 1233322211112233 3457999999999999998654
Q ss_pred C-CCccEEEE-cCccCHHHHHHHHHHHCCCCCC--CCCCCCC---CCCCccccccchhH-hhhCCcc-cCHHHHHHHHHH
Q 020608 244 S-ACGRHLCV-EAISHYGDFVAKVAELYPEYDI--PRLPKDT---QPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVE 314 (323)
Q Consensus 244 ~-~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~ 314 (323)
. .++.||++ ++.+|++|+++.+.+.....+. ....... ........+|++|+ +.|||+| ++++++|+++++
T Consensus 175 ~~~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~dti~ 254 (854)
T PRK05865 175 VIDSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLEDFTL 254 (854)
T ss_pred CcCCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 3 45679975 6789999999999875421111 1100100 01112346899999 8899999 999999999999
Q ss_pred HHHHc
Q 020608 315 SLKAK 319 (323)
Q Consensus 315 ~~~~~ 319 (323)
|++.+
T Consensus 255 ~~r~r 259 (854)
T PRK05865 255 AVRGR 259 (854)
T ss_pred HHHhh
Confidence 99864
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=227.09 Aligned_cols=305 Identities=19% Similarity=0.169 Sum_probs=238.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHH-HHhhccC-CCCCeEEEEccCCCHhHHHHHhc--CCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETA-HLKALEG-ADTRLRLFQIDLLDYDAIAAAVT--GCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~--~~d 79 (323)
++|+.||||-||+-|++|++.|++.||+|.++.|+.+...... ++-+.+. .+.+++++.+|++|...+.++++ ++|
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence 4689999999999999999999999999999999754322211 2222222 23568999999999999999988 579
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc--CEEEEecccccccCCCCCCCCccccCCCCCChhhhcc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV--KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQ 157 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 157 (323)
.|+|+|+.+.++.+++.|..+.+++..|+.+|+++.+..+. .+|...||. ..|+... ..|.+|++|..|.
T Consensus 81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStS-E~fG~v~---~~pq~E~TPFyPr---- 152 (345)
T COG1089 81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTS-ELYGLVQ---EIPQKETTPFYPR---- 152 (345)
T ss_pred hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccH-HhhcCcc---cCccccCCCCCCC----
Confidence 99999999999999999999999999999999999988764 377777776 8888765 7789999999886
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC--chhHHHHHHHHcCCCCC--cc--CcCCCcccHHH
Q 020608 158 NEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL--NASMLMLLRLLQGCTDT--YE--NFFMGSVHFKD 231 (323)
Q Consensus 158 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~--~~~~~~~~~~~~g~~~~--~~--~~~~~~i~v~D 231 (323)
++|+.+|+-+..+...|.+.+|+-.+.=..++--+|.....+ ......+.++..|.... .| +..++|-|+.|
T Consensus 153 --SPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~D 230 (345)
T COG1089 153 --SPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKD 230 (345)
T ss_pred --CHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHH
Confidence 889999999999999999999999998888888888754432 12223444555565432 44 35788999999
Q ss_pred HHHHHHHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCC-CCC-----C-------------CCCC--CCCCCcccc
Q 020608 232 VALAHILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEY-DIP-----R-------------LPKD--TQPGLLRTK 289 (323)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~-~~~-----~-------------~~~~--~~~~~~~~~ 289 (323)
-+++.+.+++.... ..|++ +++..|++|+++...+..|.. .+. . +.+. ++....-..
T Consensus 231 YVe~mwlmLQq~~P-ddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~Ll 309 (345)
T COG1089 231 YVEAMWLMLQQEEP-DDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLL 309 (345)
T ss_pred HHHHHHHHHccCCC-CceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchhhhhhc
Confidence 99999999987763 45776 689999999999999988621 100 0 0000 111222356
Q ss_pred ccchhH-hhhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 290 DGAKKL-MDLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 290 ~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
-|++|+ ++|||+| +++++.+++|+++-.+.
T Consensus 310 gdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~ 341 (345)
T COG1089 310 GDPTKAKEKLGWRPEVSLEELVREMVEADLEA 341 (345)
T ss_pred CCHHHHHHHcCCccccCHHHHHHHHHHHHHHH
Confidence 799999 7899999 99999999999986654
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=256.48 Aligned_cols=267 Identities=14% Similarity=0.109 Sum_probs=189.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC---CEEEEEecCCCcHHHHHHHh-hc-------------cC-----CCCCeEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR---YTVHATVKNLSDERETAHLK-AL-------------EG-----ADTRLRLF 61 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~-~~-------------~~-----~~~~~~~~ 61 (323)
++|+|||||||||||++|++.|++.+ .+|+++.|........+.+. .+ .. ...+++++
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i 89 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV 89 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence 67999999999999999999999864 37899999876443333321 10 00 01578999
Q ss_pred EccCC-------CHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEeccccccc
Q 020608 62 QIDLL-------DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSIT 133 (323)
Q Consensus 62 ~~Dl~-------~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~ 133 (323)
.||++ +.+.++++++++|+|||+|+...+ ..++...+++|+.|+.+++++|++. ++++|||+||.+++.
T Consensus 90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG 166 (491)
T PLN02996 90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCG 166 (491)
T ss_pred ecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEec
Confidence 99998 445577888899999999998654 2457789999999999999999886 688999999995554
Q ss_pred CCCCCCCCccccCCC-C----------------------------------------CChhhhccCCCchHHHHHHHHHH
Q 020608 134 PSPKWPADKVKDEDC-W----------------------------------------TDEEYCRQNEIWYPLSKTLAEKA 172 (323)
Q Consensus 134 ~~~~~~~~~~~~e~~-~----------------------------------------~~~~~~~~~~~~Y~~sK~~~e~~ 172 (323)
...+.-.+.++++.. + ..+.....++++|+.||.++|.+
T Consensus 167 ~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~l 246 (491)
T PLN02996 167 EKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEML 246 (491)
T ss_pred CCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHHH
Confidence 322100011111100 0 00000123457899999999999
Q ss_pred HHHHHHhCCccEEEEcCCCccCCCCCCCCc------hhHHHHHHHHcCCCCC-c--cCcCCCcccHHHHHHHHHHhhcCC
Q 020608 173 AWEFAKEKGLDVVVVNPGTVMGPVIPPTLN------ASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 173 ~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~------~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+..++ .+++++++||++||||...+... ....++..+.+|.... . ++..+++|||+|+|++++.++...
T Consensus 247 v~~~~--~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~ 324 (491)
T PLN02996 247 LGNFK--ENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMAAH 324 (491)
T ss_pred HHHhc--CCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHHHh
Confidence 98775 38999999999999997644211 1123344455565533 3 445788999999999999998752
Q ss_pred ----CCCccEEEE-c--CccCHHHHHHHHHHHCCCCCCC
Q 020608 244 ----SACGRHLCV-E--AISHYGDFVAKVAELYPEYDIP 275 (323)
Q Consensus 244 ----~~~~~~~~~-~--~~~~~~e~~~~i~~~~~~~~~~ 275 (323)
..+..||++ + .++|+.|+++.+.+.++..+..
T Consensus 325 ~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~~ 363 (491)
T PLN02996 325 AGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPWI 363 (491)
T ss_pred hccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCCc
Confidence 123459985 5 6899999999999988665543
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=243.16 Aligned_cols=263 Identities=16% Similarity=0.162 Sum_probs=191.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|||||||||||++|+++|+++||+|++++|+.++.. .+. ..+++++.+|++|++++.++++++|+|||++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~---~l~-----~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKAS---FLK-----EWGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhh---hHh-----hcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 48999999999999999999999999999999753221 111 1268899999999999999999999999998
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+.. ..++....++|+.++.+++++|++.++++||++||.++. ... ..+|..+
T Consensus 73 ~~~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~-~~~----------------------~~~~~~~ 124 (317)
T CHL00194 73 TSR-----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAE-QYP----------------------YIPLMKL 124 (317)
T ss_pred CCC-----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccccc-ccC----------------------CChHHHH
Confidence 642 223445778999999999999999999999999996321 110 0338899
Q ss_pred HHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC--ccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 166 KTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT--YENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 166 K~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
|..+|.+++ +++++++++||+.+|+..... .......+.+.. .+...++|||++|+|+++..+++++
T Consensus 125 K~~~e~~l~----~~~l~~tilRp~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~ 193 (317)
T CHL00194 125 KSDIEQKLK----KSGIPYTIFRLAGFFQGLISQ-------YAIPILEKQPIWITNESTPISYIDTQDAAKFCLKSLSLP 193 (317)
T ss_pred HHHHHHHHH----HcCCCeEEEeecHHhhhhhhh-------hhhhhccCCceEecCCCCccCccCHHHHHHHHHHHhcCc
Confidence 999998774 578999999999888642110 111122233332 2345567999999999999999875
Q ss_pred CC-CccEEEE-cCccCHHHHHHHHHHHCCCC----CCCCCCC-----------C---CCC---------CCccccccchh
Q 020608 244 SA-CGRHLCV-EAISHYGDFVAKVAELYPEY----DIPRLPK-----------D---TQP---------GLLRTKDGAKK 294 (323)
Q Consensus 244 ~~-~~~~~~~-~~~~~~~e~~~~i~~~~~~~----~~~~~~~-----------~---~~~---------~~~~~~~~~~~ 294 (323)
.. ++.||++ ++.+|++|+++.+.+.+|.. .+|.+.. . ... .......+.++
T Consensus 194 ~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 273 (317)
T CHL00194 194 ETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMAE 273 (317)
T ss_pred cccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHHH
Confidence 54 4569985 67899999999999998642 1221110 0 000 00123446677
Q ss_pred H-hhhCCcc---cCHHHHHHHHHHH
Q 020608 295 L-MDLGLQF---IPMDQIIKDSVES 315 (323)
Q Consensus 295 ~-~~lG~~~---~~~~~~l~~~~~~ 315 (323)
+ +.+|+.| .++++++++.++-
T Consensus 274 ~~~~~g~~p~~~~~~~~~~~~~~~~ 298 (317)
T CHL00194 274 LYKIFKIDPNELISLEDYFQEYFER 298 (317)
T ss_pred HHHHhCCChhhhhhHHHHHHHHHHH
Confidence 7 7889997 6889888887764
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=244.07 Aligned_cols=274 Identities=22% Similarity=0.231 Sum_probs=186.5
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcccC
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLASP 87 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a~~ 87 (323)
|||||||||||++++++|+++|++|++++|++....... ... ..|+.. ..+...+.++|+|||+|+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~--~~~~~~-~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK----------WEG--YKPWAP-LAESEALEGADAVINLAGE 67 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc----------cee--eecccc-cchhhhcCCCCEEEECCCC
Confidence 699999999999999999999999999999875422100 001 112222 3445667889999999997
Q ss_pred CccCC--CCCchhhhhhHHHHHHHHHHHHHhhCCcC--EEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 88 CIVDK--VEDPQNQLLNPAVKGTVNVLTAAKALGVK--RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 88 ~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
..... ........+++|+.+++++++++++.+++ .||+.||. .+|+... ..+++|+.+..+. +.|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~-~~yg~~~---~~~~~E~~~~~~~------~~~~ 137 (292)
T TIGR01777 68 PIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAV-GYYGTSE---DRVFTEEDSPAGD------DFLA 137 (292)
T ss_pred CcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeE-EEeCCCC---CCCcCcccCCCCC------ChHH
Confidence 54322 22345678889999999999999998864 45555555 4555432 4567887744332 3366
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHH--HHHcCCCCCccCcCCCcccHHHHHHHHHHhhc
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLL--RLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
..+...|..+..+ ++.+++++++||+.+|||... . ...++. ....+.+...++..++|||++|+|+++..+++
T Consensus 138 ~~~~~~e~~~~~~-~~~~~~~~ilR~~~v~G~~~~--~--~~~~~~~~~~~~~~~~g~~~~~~~~i~v~Dva~~i~~~l~ 212 (292)
T TIGR01777 138 ELCRDWEEAAQAA-EDLGTRVVLLRTGIVLGPKGG--A--LAKMLPPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFALE 212 (292)
T ss_pred HHHHHHHHHhhhc-hhcCCceEEEeeeeEECCCcc--h--hHHHHHHHhcCcccccCCCCcccccEeHHHHHHHHHHHhc
Confidence 6666667665544 346899999999999999642 1 111111 11222222345567889999999999999998
Q ss_pred CCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC---CCCCCCC-----C-CCCCccccccchhHhhhCCcc-c-CHHHHH
Q 020608 242 NPSACGRHLCV-EAISHYGDFVAKVAELYPEYD---IPRLPKD-----T-QPGLLRTKDGAKKLMDLGLQF-I-PMDQII 309 (323)
Q Consensus 242 ~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~---~~~~~~~-----~-~~~~~~~~~~~~~~~~lG~~~-~-~~~~~l 309 (323)
++...+.||++ ++++|+.|+++.+++.++... +|.+... . .....+..++++|++++||+| + +++|++
T Consensus 213 ~~~~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 213 NASISGPVNATAPEPVRNKEFAKALARALHRPAFFPVPAFVLRALLGEMADLLLKGQRVLPEKLLEAGFQFQYPDLDEAL 292 (292)
T ss_pred CcccCCceEecCCCccCHHHHHHHHHHHhCCCCcCcCCHHHHHHHhchhhHHHhCCcccccHHHHhcCCeeeCcChhhcC
Confidence 87667789985 678999999999999997421 2211100 0 001124567889998899999 5 688864
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=241.15 Aligned_cols=239 Identities=23% Similarity=0.186 Sum_probs=203.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 80 (323)
.+|+||||||+|-||+.+|+++++.+. ++++++|++-+.......-.......++.++.||++|.+.++.++++ +|+
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 689999999999999999999999874 78888887644433222211111246889999999999999999997 999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|||.|+..++|..+.+|.+.+++|+.||.|++++|.++++++||.+||..++++. |
T Consensus 329 VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~Pt------------------------N 384 (588)
T COG1086 329 VFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPT------------------------N 384 (588)
T ss_pred EEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCc------------------------h
Confidence 9999999999999999999999999999999999999999999999999877754 5
Q ss_pred chHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC--cccHHHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG--SVHFKDVALA 235 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~i~v~D~a~~ 235 (323)
.||.||+.+|.++.++++.. +..++++|+|||.|.. ....+.+...+.+|.|...-+..+. |..++|.++.
T Consensus 385 vmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr----GSViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~L 460 (588)
T COG1086 385 VMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR----GSVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQL 460 (588)
T ss_pred HhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC----CCCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHH
Confidence 69999999999999997744 3899999999999975 2345567788889998875554444 9999999999
Q ss_pred HHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCC
Q 020608 236 HILVYENPSACGRHLCV-EAISHYGDFVAKVAELYP 270 (323)
Q Consensus 236 ~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~ 270 (323)
++.+....+.+..|.+. |+++++.|+++.+.+..|
T Consensus 461 VlqA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 461 VLQAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 99999887676678886 799999999999999886
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=236.27 Aligned_cols=233 Identities=22% Similarity=0.150 Sum_probs=177.6
Q ss_pred EEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhcc--CCCCCe----EEEEccCCCHhHHHHHhc--CC
Q 020608 8 VCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALE--GADTRL----RLFQIDLLDYDAIAAAVT--GC 78 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~----~~~~~Dl~~~~~~~~~~~--~~ 78 (323)
||||||+|.||+.||++|++.+ .++++++|++...... ..++. ....++ ..+.+|++|.+.+.++++ ++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l--~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~p 78 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL--ERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKP 78 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH--HHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH--HHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCC
Confidence 7999999999999999999988 5899999875433332 22231 112234 346899999999999999 89
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
|+|||.|+..+++..+.++.+.+++|+.||+|++++|.++++++||++||..++.+.
T Consensus 79 diVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Pt----------------------- 135 (293)
T PF02719_consen 79 DIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPT----------------------- 135 (293)
T ss_dssp SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS-------------------------
T ss_pred CEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCC-----------------------
Confidence 999999999999888999999999999999999999999999999999998666533
Q ss_pred CCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC--cCCCcccHHHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN--FFMGSVHFKDVA 233 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~i~v~D~a 233 (323)
|.||.||+.+|.++..++... +..++++|+|+|.|.. ....+.+..++.+|.|+...+ ..+-|+.++|++
T Consensus 136 -nvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~----GSVip~F~~Qi~~g~PlTvT~p~mtRffmti~EAv 210 (293)
T PF02719_consen 136 -NVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR----GSVIPLFKKQIKNGGPLTVTDPDMTRFFMTIEEAV 210 (293)
T ss_dssp -SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT----TSCHHHHHHHHHTTSSEEECETT-EEEEE-HHHHH
T ss_pred -cHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC----CcHHHHHHHHHHcCCcceeCCCCcEEEEecHHHHH
Confidence 669999999999999988665 6899999999999964 344667888999999887544 344499999999
Q ss_pred HHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCC
Q 020608 234 LAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYP 270 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~ 270 (323)
+.++.+......+..|... ++++++.|+++.+.+..|
T Consensus 211 ~Lvl~a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g 248 (293)
T PF02719_consen 211 QLVLQAAALAKGGEIFVLDMGEPVKILDLAEAMIELSG 248 (293)
T ss_dssp HHHHHHHHH--TTEEEEE---TCEECCCHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCcEEEecCCCCcCHHHHHHHHHhhcc
Confidence 9999998876666668875 789999999999999986
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=256.96 Aligned_cols=297 Identities=23% Similarity=0.146 Sum_probs=205.2
Q ss_pred ceEEEeccccHHHHHHHHHHH--HCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH------hHHHHHhcC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLL--ERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY------DAIAAAVTG 77 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~------~~~~~~~~~ 77 (323)
|+|||||||||||++|+++|+ +.|++|++++|+............. ...+++++.+|++|+ +.++++ ++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~--~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYW--GADRVVPLVGDLTEPGLGLSEADIAEL-GD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhc--CCCcEEEEecccCCccCCcCHHHHHHh-cC
Confidence 489999999999999999999 4799999999964322211111111 114789999999984 456665 89
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhcc
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQ 157 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 157 (323)
+|+|||||+.... ........++|+.++.+++++|++.++++|||+||.+++ +.. ..+.+|+.+..+ ..
T Consensus 78 ~D~Vih~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~-g~~----~~~~~e~~~~~~---~~ 146 (657)
T PRK07201 78 IDHVVHLAAIYDL---TADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVA-GDY----EGVFREDDFDEG---QG 146 (657)
T ss_pred CCEEEECceeecC---CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccc-cCc----cCccccccchhh---cC
Confidence 9999999997543 234466789999999999999999989999999998554 332 234455543222 12
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---ch---hHHHHHHHHcCC---CCC-ccCcCCCcc
Q 020608 158 NEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NA---SMLMLLRLLQGC---TDT-YENFFMGSV 227 (323)
Q Consensus 158 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~---~~~~~~~~~~g~---~~~-~~~~~~~~i 227 (323)
+.++|+.+|.++|.++.. ..+++++++||+++|||...... .. ....+..+.... +.. .+.+..+++
T Consensus 147 ~~~~Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (657)
T PRK07201 147 LPTPYHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIV 223 (657)
T ss_pred CCCchHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeee
Confidence 236799999999999863 35899999999999998643211 11 111222221111 111 223456799
Q ss_pred cHHHHHHHHHHhhcCCCCC-ccEEEE-cCccCHHHHHHHHHHHCCCCC-------CCCCCC----C-C------------
Q 020608 228 HFKDVALAHILVYENPSAC-GRHLCV-EAISHYGDFVAKVAELYPEYD-------IPRLPK----D-T------------ 281 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~~~~-~~~~~~-~~~~~~~e~~~~i~~~~~~~~-------~~~~~~----~-~------------ 281 (323)
|++|+++++..+++.+... +.||++ ++++++.|+++.+.+.++... +|.+.. . .
T Consensus 224 ~vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 303 (657)
T PRK07201 224 PVDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAVAT 303 (657)
T ss_pred eHHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHHHH
Confidence 9999999999998865544 469985 678999999999999986432 121100 0 0
Q ss_pred -C--------CCCccccccchhH-hhh---CCcccCHHHHHHHHHHHHHHc
Q 020608 282 -Q--------PGLLRTKDGAKKL-MDL---GLQFIPMDQIIKDSVESLKAK 319 (323)
Q Consensus 282 -~--------~~~~~~~~~~~~~-~~l---G~~~~~~~~~l~~~~~~~~~~ 319 (323)
. .......+|++++ +.| |+.+..+.+.+.+.++|..++
T Consensus 304 ~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 354 (657)
T PRK07201 304 QLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVPRLASYAPRLWDYWERH 354 (657)
T ss_pred hcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCCChHHHHHHHHHHHHhc
Confidence 0 0011247889998 777 666688899999999877654
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=231.12 Aligned_cols=270 Identities=12% Similarity=0.082 Sum_probs=187.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
.|+||||||+||||++|+++|+++|++|++.. +|++|.+.+...++ ++|+||
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~--------------------------~~~~~~~~v~~~l~~~~~D~Vi 62 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS--------------------------GRLENRASLEADIDAVKPTHVF 62 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEec--------------------------CccCCHHHHHHHHHhcCCCEEE
Confidence 47899999999999999999999999987531 34455555665555 689999
Q ss_pred EcccCCccCC---CCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCC--CCccccCCCCCChhhhcc
Q 020608 83 HLASPCIVDK---VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWP--ADKVKDEDCWTDEEYCRQ 157 (323)
Q Consensus 83 h~a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~ 157 (323)
|+||....+. ...++...+++|+.++.+++++|++.+++ ++++||.+++......+ ...+++|++++.+
T Consensus 63 H~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~----- 136 (298)
T PLN02778 63 NAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDTPNF----- 136 (298)
T ss_pred ECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCCCCC-----
Confidence 9999865322 34567889999999999999999999885 55666653443221111 0224677655432
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHH
Q 020608 158 NEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAH 236 (323)
Q Consensus 158 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~ 236 (323)
+.+.|+.+|.++|.++..++ +..++|++..+|++... ...++..+..+.+.. .+ .+|+|++|+++++
T Consensus 137 ~~s~Yg~sK~~~E~~~~~y~-----~~~~lr~~~~~~~~~~~----~~~fi~~~~~~~~~~~~~---~s~~yv~D~v~al 204 (298)
T PLN02778 137 TGSFYSKTKAMVEELLKNYE-----NVCTLRVRMPISSDLSN----PRNFITKITRYEKVVNIP---NSMTILDELLPIS 204 (298)
T ss_pred CCCchHHHHHHHHHHHHHhh-----ccEEeeecccCCccccc----HHHHHHHHHcCCCeeEcC---CCCEEHHHHHHHH
Confidence 22679999999999998765 35678888878764321 122456666666533 33 3699999999999
Q ss_pred HHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCC----CCCCCCCC--CCCCCccccccchhH-hhhCCcccCHHHH
Q 020608 237 ILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEY----DIPRLPKD--TQPGLLRTKDGAKKL-MDLGLQFIPMDQI 308 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~-~~lG~~~~~~~~~ 308 (323)
+.+++... .|.||+ +++.+|+.|+++.+++.++.. .+...... .........+|++|+ +.++=.+...+++
T Consensus 205 ~~~l~~~~-~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~~~~~~~~~ 283 (298)
T PLN02778 205 IEMAKRNL-TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPELLPIKESL 283 (298)
T ss_pred HHHHhCCC-CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHhcccccchHHHH
Confidence 99987643 478998 477899999999999999641 11100000 000111337999999 5555545778899
Q ss_pred HHHHHHHHHHc
Q 020608 309 IKDSVESLKAK 319 (323)
Q Consensus 309 l~~~~~~~~~~ 319 (323)
+++.++-++..
T Consensus 284 ~~~~~~~~~~~ 294 (298)
T PLN02778 284 IKYVFEPNKKT 294 (298)
T ss_pred HHHHHHHHHhh
Confidence 99988877543
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-30 Score=229.12 Aligned_cols=254 Identities=21% Similarity=0.181 Sum_probs=179.9
Q ss_pred eEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhh----c--cCC--C-CCeEEEEccCCCH------h
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKA----L--EGA--D-TRLRLFQIDLLDY------D 69 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~----~--~~~--~-~~~~~~~~Dl~~~------~ 69 (323)
+|||||||||||++|+++|+++| ++|+++.|+.+.....+.+.+ . ... . .+++++.+|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58999999999999999999998 679999998754322222211 1 000 1 4789999999754 4
Q ss_pred HHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 70 ~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
.+..+.+++|+|||+|+.... ..++...+++|+.++.+++++|.+.++++|+++||.+++.... ..+..|+++
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~----~~~~~~~~~ 153 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAID----LSTVTEDDA 153 (367)
T ss_pred HHHHHHhhCCEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcC----CCCcccccc
Confidence 567777899999999987532 2345677889999999999999998888999999996654432 122344433
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCCccC-cCCC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDTYEN-FFMG 225 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~~~~-~~~~ 225 (323)
..+. ...+.+.|+.+|..+|.+++.+.. .|++++++|||.+||+...... .....++............. ...+
T Consensus 154 ~~~~-~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 231 (367)
T TIGR01746 154 IVTP-PPGLAGGYAQSKWVAELLVREASD-RGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPDSPELTED 231 (367)
T ss_pred cccc-ccccCCChHHHHHHHHHHHHHHHh-cCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCCCCCccccC
Confidence 2221 112336799999999999988764 4999999999999998432211 11222222222222222222 2466
Q ss_pred cccHHHHHHHHHHhhcCCCC---CccEEEE-cCccCHHHHHHHHHHHCC
Q 020608 226 SVHFKDVALAHILVYENPSA---CGRHLCV-EAISHYGDFVAKVAELYP 270 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~~---~~~~~~~-~~~~~~~e~~~~i~~~~~ 270 (323)
++|++|+|++++.++..+.. ++.||++ ++++++.|+++.+.+ .+
T Consensus 232 ~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g 279 (367)
T TIGR01746 232 LTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AG 279 (367)
T ss_pred cccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cC
Confidence 99999999999999876654 4569985 688999999999988 53
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-31 Score=213.06 Aligned_cols=276 Identities=21% Similarity=0.275 Sum_probs=193.1
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-CCCEEEEccc
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-GCTGVFHLAS 86 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~Vih~a~ 86 (323)
|+|||||||||++|+.+|.+.||+|+++.|+++.... +.. ..++..+.+....+ ++|+|||+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~------------~~~---~~v~~~~~~~~~~~~~~DavINLAG 65 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQ------------NLH---PNVTLWEGLADALTLGIDAVINLAG 65 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhh------------hcC---ccccccchhhhcccCCCCEEEECCC
Confidence 6899999999999999999999999999998755432 111 11123334444445 7999999999
Q ss_pred CCccCC--CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 87 PCIVDK--VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
..-... +.+......+..+..|..|.++..+. +.+.+|.-|.+ +||+... +..++|+.+...+
T Consensus 66 ~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAv-GyYG~~~---~~~~tE~~~~g~~--------- 132 (297)
T COG1090 66 EPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAV-GYYGHSG---DRVVTEESPPGDD--------- 132 (297)
T ss_pred CccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceE-EEecCCC---ceeeecCCCCCCC---------
Confidence 765543 44556678888999999999997754 34445555544 7888765 7889998654332
Q ss_pred HHHHHHHHHHHHHH--HHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhh
Q 020608 163 PLSKTLAEKAAWEF--AKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 163 ~~sK~~~e~~~~~~--~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~ 240 (323)
..-..|..|-... ++..|.+++.+|.|.|.+|... .-..+....+...|.+...|.+.++|||++|+++++..++
T Consensus 133 -Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GG--aL~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll 209 (297)
T COG1090 133 -FLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGG--ALGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLL 209 (297)
T ss_pred -hHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCc--chhhhcchhhhccCCccCCCCceeeeeeHHHHHHHHHHHH
Confidence 2222222222111 2235999999999999998532 1122233445666777777788888999999999999999
Q ss_pred cCCCCCccEEE-EcCccCHHHHHHHHHHHCCCC---CCCCCCCCCCCC------CccccccchhHhhhCCcc--cCHHHH
Q 020608 241 ENPSACGRHLC-VEAISHYGDFVAKVAELYPEY---DIPRLPKDTQPG------LLRTKDGAKKLMDLGLQF--IPMDQI 308 (323)
Q Consensus 241 ~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~--~~~~~~ 308 (323)
++....|.||+ ++.+++..++.+.+.+.+... .+|.+..+.... .....+=++|+...||++ .+++++
T Consensus 210 ~~~~lsGp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~aGF~F~y~dl~~A 289 (297)
T COG1090 210 ENEQLSGPFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKLEAAGFQFQYPDLEEA 289 (297)
T ss_pred hCcCCCCcccccCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHHHHCCCeeecCCHHHH
Confidence 99999999997 589999999999999999632 333322111111 112344455666679998 799999
Q ss_pred HHHHHH
Q 020608 309 IKDSVE 314 (323)
Q Consensus 309 l~~~~~ 314 (323)
|.+.+.
T Consensus 290 L~~il~ 295 (297)
T COG1090 290 LADILK 295 (297)
T ss_pred HHHHHh
Confidence 998764
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=231.08 Aligned_cols=229 Identities=16% Similarity=0.092 Sum_probs=173.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----CCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----GCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d 79 (323)
++++|||||||||||++++++|+++|++|+++.|+.+................+++++.+|++|++.+.++++ ++|
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~D 138 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPVD 138 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCCc
Confidence 5789999999999999999999999999999999764321111111111112468899999999999999888 589
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
+||||++.... .....+++|+.++.++++++++.++++||++||.+++.+.
T Consensus 139 ~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~p~------------------------ 189 (390)
T PLN02657 139 VVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQKPL------------------------ 189 (390)
T ss_pred EEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccCcc------------------------
Confidence 99999874211 1234577899999999999999999999999998432110
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCC---CcccHHHHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFM---GSVHFKDVALA 235 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~---~~i~v~D~a~~ 235 (323)
..|..+|..+|..+.. ...+++++++||+.+||+.. ..+..+..|.+.. ++++.. .+||++|+|++
T Consensus 190 ~~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~~--------~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~ 259 (390)
T PLN02657 190 LEFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSLG--------GQVEIVKDGGPYVMFGDGKLCACKPISEADLASF 259 (390)
T ss_pred hHHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhcccH--------HHHHhhccCCceEEecCCcccccCceeHHHHHHH
Confidence 2388999999988764 34799999999999997531 1234445666653 555542 47999999999
Q ss_pred HHHhhcCCCC-CccEEEEc--CccCHHHHHHHHHHHCCC
Q 020608 236 HILVYENPSA-CGRHLCVE--AISHYGDFVAKVAELYPE 271 (323)
Q Consensus 236 ~~~~~~~~~~-~~~~~~~~--~~~~~~e~~~~i~~~~~~ 271 (323)
+..++.++.. +..||+++ +.+|++|+++.+.+.+|.
T Consensus 260 i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~ 298 (390)
T PLN02657 260 IADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGK 298 (390)
T ss_pred HHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCC
Confidence 9999876544 44589863 589999999999999875
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=213.01 Aligned_cols=220 Identities=25% Similarity=0.247 Sum_probs=134.0
Q ss_pred EeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHh-hccC----------CCCCeEEEEccCCCH------hH
Q 020608 10 VTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLK-ALEG----------ADTRLRLFQIDLLDY------DA 70 (323)
Q Consensus 10 ItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~-~~~~----------~~~~~~~~~~Dl~~~------~~ 70 (323)
|||||||||++|+++|++++. +|+++.|..+.....+++. .+.. ...+++++.||++++ ++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999876 9999999876655555552 2211 146899999999975 45
Q ss_pred HHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCC-Ccc--ccCC
Q 020608 71 IAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPA-DKV--KDED 147 (323)
Q Consensus 71 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~-~~~--~~e~ 147 (323)
++.+.+++|+|||||+...+. .++.+.+++|+.|+.++++.|.+.+.++|+|+||. .+.+...... +.. ..+.
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~~~---~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa-~v~~~~~~~~~~~~~~~~~~ 156 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVNFN---APYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTA-YVAGSRPGTIEEKVYPEEED 156 (249)
T ss_dssp HHHHHHH--EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEG-GGTTS-TTT--SSS-HHH--
T ss_pred hhccccccceeeecchhhhhc---ccchhhhhhHHHHHHHHHHHHHhccCcceEEeccc-cccCCCCCcccccccccccc
Confidence 777778999999999987653 35566889999999999999997776799999994 5554432110 000 1111
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC---CCCc-hhHHHHHHHHcCCCCC---cc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP---PTLN-ASMLMLLRLLQGCTDT---YE 220 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~---~~~~-~~~~~~~~~~~g~~~~---~~ 220 (323)
... ......+.|..||.++|.+++.++++.|++++|+|||.|+|.... .... ....+...+..|.... .+
T Consensus 157 ~~~---~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 233 (249)
T PF07993_consen 157 DLD---PPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDP 233 (249)
T ss_dssp EEE-----TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB--
T ss_pred cch---hhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCC
Confidence 111 112334789999999999999999877999999999999994322 1222 2223333444454332 22
Q ss_pred CcCCCcccHHHHHHHH
Q 020608 221 NFFMGSVHFKDVALAH 236 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~ 236 (323)
....++++||.+|+++
T Consensus 234 ~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 234 DARLDLVPVDYVARAI 249 (249)
T ss_dssp -TT--EEEHHHHHHHH
T ss_pred CceEeEECHHHHHhhC
Confidence 3458899999999985
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-28 Score=222.33 Aligned_cols=255 Identities=13% Similarity=0.096 Sum_probs=180.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC---EEEEEecCCCcHHHHHHHh-hcc---------C---------CCCCeEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY---TVHATVKNLSDERETAHLK-ALE---------G---------ADTRLRLF 61 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~-~~~---------~---------~~~~~~~~ 61 (323)
++|+|||||||||||++|++.|++.+. +|+++.|........++++ ++. + ...+++++
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 579999999999999999999998754 7899999876554444442 110 0 12468999
Q ss_pred EccCCCH------hHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccccC
Q 020608 62 QIDLLDY------DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSITP 134 (323)
Q Consensus 62 ~~Dl~~~------~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~ 134 (323)
.+|++++ +.++.+.+++|+|||+|+...+ ..++...+++|+.|+.+++++|++. ++++|||+||++++ +
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f---~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVy-G 273 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTTF---DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVN-G 273 (605)
T ss_pred EeeCCCcccCCCHHHHHHHHhcCCEEEECcccccc---ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceee-c
Confidence 9999986 4567777889999999998654 3467789999999999999999886 47899999998554 4
Q ss_pred CCCCCCCccccCCCCC----------------------Ch-------------------------------hhhccCCCc
Q 020608 135 SPKWPADKVKDEDCWT----------------------DE-------------------------------EYCRQNEIW 161 (323)
Q Consensus 135 ~~~~~~~~~~~e~~~~----------------------~~-------------------------------~~~~~~~~~ 161 (323)
.. ...+.|.... .+ .....++|.
T Consensus 274 ~~----~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNt 349 (605)
T PLN02503 274 QR----QGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDT 349 (605)
T ss_pred CC----CCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCCh
Confidence 33 1223332221 00 011234588
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCc----------cCCCCCCCCchhHHHHHHHHcCCCC-C--ccCcCCCccc
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTV----------MGPVIPPTLNASMLMLLRLLQGCTD-T--YENFFMGSVH 228 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v----------~G~~~~~~~~~~~~~~~~~~~g~~~-~--~~~~~~~~i~ 228 (323)
|..+|.++|.++..+. .+++++|+||+.| |+++... ..+ .+....+|... . .++...++|+
T Consensus 350 Yt~TK~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~--~~p--~~~~~g~G~lr~~~~~~~~~~DiVP 423 (605)
T PLN02503 350 YVFTKAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRM--MDP--IVLYYGKGQLTGFLADPNGVLDVVP 423 (605)
T ss_pred HHHHHHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccc--cch--hhhheeccceeEEEeCCCeeEeEEe
Confidence 9999999999998654 4899999999999 4443211 111 11222344322 1 3445677999
Q ss_pred HHHHHHHHHHhhcC-----CCCCccEEEE-c--CccCHHHHHHHHHHHCCCC
Q 020608 229 FKDVALAHILVYEN-----PSACGRHLCV-E--AISHYGDFVAKVAELYPEY 272 (323)
Q Consensus 229 v~D~a~~~~~~~~~-----~~~~~~~~~~-~--~~~~~~e~~~~i~~~~~~~ 272 (323)
||.++++++.++.. .....+||++ + .++++.++.+.+.+.+...
T Consensus 424 VD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~ 475 (605)
T PLN02503 424 ADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSS 475 (605)
T ss_pred ecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhC
Confidence 99999999988431 1123469985 5 6899999999999877443
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=226.57 Aligned_cols=264 Identities=13% Similarity=0.119 Sum_probs=184.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 81 (323)
+.|+||||||+||||++|++.|.++|++|... .+|++|.+.+.+.++ ++|+|
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~--------------------------~~~l~d~~~v~~~i~~~~pd~V 432 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG--------------------------KGRLEDRSSLLADIRNVKPTHV 432 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEee--------------------------ccccccHHHHHHHHHhhCCCEE
Confidence 45789999999999999999999999987421 256788888887776 68999
Q ss_pred EEcccCCcc---CCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCC--CCccccCCCCCChhhhc
Q 020608 82 FHLASPCIV---DKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWP--ADKVKDEDCWTDEEYCR 156 (323)
Q Consensus 82 ih~a~~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~--~~~~~~e~~~~~~~~~~ 156 (323)
||||+.... ..++.++...+++|+.++.+++++|++.++ ++|++||.+++.+....+ ...+++|++++.+
T Consensus 433 ih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~---- 507 (668)
T PLN02260 433 FNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNF---- 507 (668)
T ss_pred EECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC-eEEEEcccceecCCcccccccCCCCCcCCCCCC----
Confidence 999998643 234567788999999999999999999998 567778764543221100 0246788765433
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC-CCccCcCCCcccHHHHHHH
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT-DTYENFFMGSVHFKDVALA 235 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~i~v~D~a~~ 235 (323)
+.+.|+.||+++|.++..+. +..++|+..+||+...... .++..+.+... ...+. ...+.+|++.+
T Consensus 508 -~~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~~~----nfv~~~~~~~~~~~vp~---~~~~~~~~~~~ 574 (668)
T PLN02260 508 -TGSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSNPR----NFITKISRYNKVVNIPN---SMTVLDELLPI 574 (668)
T ss_pred -CCChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCCcc----HHHHHHhccceeeccCC---CceehhhHHHH
Confidence 12679999999999997663 4567777778865422111 23334443332 22332 35678899988
Q ss_pred HHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCC-CC---CCCCCC-C--CCCCCCccccccchhH-hhhCCcccCHH
Q 020608 236 HILVYENPSACGRHLCV-EAISHYGDFVAKVAELYP-EY---DIPRLP-K--DTQPGLLRTKDGAKKL-MDLGLQFIPMD 306 (323)
Q Consensus 236 ~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~-~~---~~~~~~-~--~~~~~~~~~~~~~~~~-~~lG~~~~~~~ 306 (323)
++.+++. ..+|.||++ ++.+|+.|+++.+.+.++ .. ++.... . ...+.+.. .+|++|+ +.+|+ +++++
T Consensus 575 ~~~l~~~-~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~~~k~~~~~~~-~~~~~ 651 (668)
T PLN02260 575 SIEMAKR-NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMDASKLKKEFPE-LLSIK 651 (668)
T ss_pred HHHHHHh-CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-cccHHHHHHhCcc-ccchH
Confidence 8888874 345889986 567999999999999774 21 111111 1 11123333 8999999 56788 89999
Q ss_pred HHHHHHHH
Q 020608 307 QIIKDSVE 314 (323)
Q Consensus 307 ~~l~~~~~ 314 (323)
++|++++.
T Consensus 652 ~~l~~~~~ 659 (668)
T PLN02260 652 ESLIKYVF 659 (668)
T ss_pred HHHHHHHh
Confidence 99998875
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=219.20 Aligned_cols=239 Identities=15% Similarity=0.134 Sum_probs=170.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|||||||||||||++|+++|+++|++|++++|.+... ...+++++.+|+++.. +.+++.++|+|||+|
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~-----------~~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLA 68 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA-----------LDPRVDYVCASLRNPV-LQELAGEADAVIHLA 68 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc-----------ccCCceEEEccCCCHH-HHHHhcCCCEEEEcC
Confidence 4899999999999999999999999999999864210 0236889999999985 778888999999999
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+.... ....+|+.++.|++++|++.++ ++||+||.+ +.. ..|.
T Consensus 69 a~~~~--------~~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~~---G~~-----------------------~~~~-- 111 (699)
T PRK12320 69 PVDTS--------APGGVGITGLAHVANAAARAGA-RLLFVSQAA---GRP-----------------------ELYR-- 111 (699)
T ss_pred ccCcc--------chhhHHHHHHHHHHHHHHHcCC-eEEEEECCC---CCC-----------------------cccc--
Confidence 86311 1225899999999999999987 799999862 221 0132
Q ss_pred HHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC-chhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 166 KTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL-NASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 166 K~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
.+|.++. .++++++++|++++|||...... .....++.....++ ...+||++|++++++.+++...
T Consensus 112 --~aE~ll~----~~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~-------pI~vIyVdDvv~alv~al~~~~ 178 (699)
T PRK12320 112 --QAETLVS----TGWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSAR-------PIRVLHLDDLVRFLVLALNTDR 178 (699)
T ss_pred --HHHHHHH----hcCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCC-------ceEEEEHHHHHHHHHHHHhCCC
Confidence 3565543 45689999999999999654221 11122222222222 2336899999999999998643
Q ss_pred CCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHH--HHHHH
Q 020608 245 ACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQ--IIKDS 312 (323)
Q Consensus 245 ~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~--~l~~~ 312 (323)
.|.||++ ++.+|++|+++.+....+... ............|.... ..++|.| .+++. .+.++
T Consensus 179 -~GiyNIG~~~~~Si~el~~~i~~~~p~~~-----~~~~~~~~~~~pdi~~a~~~~~w~~~~~~~~~~~~~~~ 245 (699)
T PRK12320 179 -NGVVDLATPDTTNVVTAWRLLRSVDPHLR-----TRRVRSWEQLIPEVDIAAVQEDWNFEFGWQATEAIVDT 245 (699)
T ss_pred -CCEEEEeCCCeeEHHHHHHHHHHhCCCcc-----ccccccHHHhCCCCchhhhhcCCCCcchHHHHHHHHhh
Confidence 4689975 788999999999977643221 12223344567778887 6789999 77654 45544
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=200.02 Aligned_cols=233 Identities=22% Similarity=0.202 Sum_probs=166.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
.|++|||||+||||++++++|+++|++|+++.|++... +.+... ...++.++.+|++|.+++.++++ +
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~---~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDAL---DDLKAR--YGDRLWVLQLDVTDSAAVRAVVDRAFAALGR 76 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHh--ccCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999999999864222 111111 12368899999999998877654 5
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+|+|||+||...... ..+.+...+++|+.++.++++++ ++.+.+++|++||.++..+.+.
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 144 (276)
T PRK06482 77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAYPG------------ 144 (276)
T ss_pred CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCCCC------------
Confidence 799999999764432 23345678899999999999997 5556789999999854432221
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCc---cCCCCCCCC------chhHHHHHHHHcCCCC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTV---MGPVIPPTL------NASMLMLLRLLQGCTD 217 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v---~G~~~~~~~------~~~~~~~~~~~~g~~~ 217 (323)
.+.|+.+|.+.|.+++.++.+ +|++++++|||.+ ||++..... ......+.+.......
T Consensus 145 ---------~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (276)
T PRK06482 145 ---------FSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSF 215 (276)
T ss_pred ---------CchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccC
Confidence 145999999999999988766 5999999999988 555432110 0111112222222111
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHC
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELY 269 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~ 269 (323)
..+.+++|++++++.++........||++ +...++.|++..+.+..
T Consensus 216 ------~~~~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (276)
T PRK06482 216 ------AIPGDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAAL 262 (276)
T ss_pred ------CCCCCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHH
Confidence 11468999999999999876565668875 55677777777665554
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=195.85 Aligned_cols=223 Identities=21% Similarity=0.177 Sum_probs=158.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|+++.|+++... +..+++...+.++.++.+|++|.+.++++++
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGAN--AVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHH--HHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999998763322 2233333334467889999999998887665
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHH----HHHHHHHH-hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKG----TVNVLTAA-KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~----~~~l~~~~-~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.+|+|||||+...... ..+.+...+++|+.+ +.++++++ +..+.++||++||..+..+...
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~~~--------- 153 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPL--------- 153 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCCCC---------
Confidence 3899999999754322 234466778899999 66666666 6666789999999855443221
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchh--------HHHHHHHHcCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNAS--------MLMLLRLLQGC 215 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~--------~~~~~~~~~g~ 215 (323)
.+.|+.+|...+.+++.++.+ .+++++++||+.+++|......... .........+
T Consensus 154 ------------~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (262)
T PRK13394 154 ------------KSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLG- 220 (262)
T ss_pred ------------CcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhc-
Confidence 134999999999998888766 4899999999999998643211000 0111111111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
+.....|++++|++++++.++..... .|+ |++++
T Consensus 221 ----~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~ 257 (262)
T PRK13394 221 ----KTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSH 257 (262)
T ss_pred ----CCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCC
Confidence 12235599999999999999975432 355 55554
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-27 Score=198.62 Aligned_cols=256 Identities=23% Similarity=0.156 Sum_probs=172.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhcc--------CCCCCeEEEEccCCC------HhH
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALE--------GADTRLRLFQIDLLD------YDA 70 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~~~~Dl~~------~~~ 70 (323)
++||+||||||+|++|+++|+.+- .+|+|++|..++....+++++.. ....+++.+.||+.. ...
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 589999999999999999999875 49999999887665555555432 224689999999984 356
Q ss_pred HHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 71 IAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 71 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
++.+.+.+|.|||+|+.... ..++.+....|+.||..+++.|...+.|.+.|+||+++.............+|+.+.
T Consensus 81 ~~~La~~vD~I~H~gA~Vn~---v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~ 157 (382)
T COG3320 81 WQELAENVDLIIHNAALVNH---VFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT 157 (382)
T ss_pred HHHHhhhcceEEecchhhcc---cCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence 77888899999999998643 567788999999999999999999888999999999654433221111222222222
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC--ccCc--CCCc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT--YENF--FMGS 226 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~--~~~~--~~~~ 226 (323)
.. ....+.++|+.||-++|.+++.+... |++++|+|||.|.|+...... ....++.++.++.... .|+. .++.
T Consensus 158 ~~-~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~-n~~D~~~Rlv~~~~~lg~~P~~~~~~~~ 234 (382)
T COG3320 158 RN-VGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGAL-NTRDFLTRLVLGLLQLGIAPDSEYSLDM 234 (382)
T ss_pred cc-ccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCcc-ccchHHHHHHHHHHHhCCCCCcccchhh
Confidence 21 12234478999999999999999865 999999999999998763221 2223333443332111 2221 1222
Q ss_pred ccH-----------HHHHHHHHHhhcCCC-CCccEEE--EcCccCHHHHHHHHHH
Q 020608 227 VHF-----------KDVALAHILVYENPS-ACGRHLC--VEAISHYGDFVAKVAE 267 (323)
Q Consensus 227 i~v-----------~D~a~~~~~~~~~~~-~~~~~~~--~~~~~~~~e~~~~i~~ 267 (323)
+.+ .-+++++..+..++. ..++|.+ -+..+...++.+.+.+
T Consensus 235 ~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 235 LPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred CccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence 222 222333333332211 1233443 2677888888887776
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=189.50 Aligned_cols=220 Identities=20% Similarity=0.177 Sum_probs=158.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+||||||||+||++|+++|+++|++|+++.|+.... .......+.....++.++.+|+.|.+++.++++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEA-AEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERF 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHc
Confidence 4668999999999999999999999999998877765322 112222222224568899999999998887764
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||...... ..+.+...+++|+.++.++++.+ ++.+.+++|++||.+++++....
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~~~--------- 153 (249)
T PRK12825 83 GRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWPGR--------- 153 (249)
T ss_pred CCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCCc---------
Confidence 5799999999654322 34456788999999999999997 45567899999998666543211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|...+.+++.++.+ .+++++++|||.++|+....... ...... .+ .. ...
T Consensus 154 ------------~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~--~~~~~~----~~-~~--~~~ 212 (249)
T PRK12825 154 ------------SNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIE--EAREAK----DA-ET--PLG 212 (249)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccc--hhHHhh----hc-cC--CCC
Confidence 34999999999999888765 58999999999999987543211 111111 00 11 112
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.+++++|+++++..+++... ..|+ |++++
T Consensus 213 ~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~ 244 (249)
T PRK12825 213 RSGTPEDIARAVAFLCSDASDYITGQVIEVTG 244 (249)
T ss_pred CCcCHHHHHHHHHHHhCccccCcCCCEEEeCC
Confidence 28899999999999997643 2344 66653
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=194.67 Aligned_cols=234 Identities=21% Similarity=0.128 Sum_probs=169.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
++|+||||||+|+||++++++|+++|++|++++|++++... ..... ...+.++.+|++|.++++++++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~--~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLAD--LAEKY---GDRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHH--HHHhc---cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999999999999987533221 11111 2367888999999988877654
Q ss_pred CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+||||||...... ..+.+.+.+++|+.++.++++++ ++.+.+++|++||.+++.+....
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~---------- 146 (275)
T PRK08263 77 RLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFPMS---------- 146 (275)
T ss_pred CCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCCCc----------
Confidence 5799999999764322 34567889999999998888886 45566799999998666544321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc------hhHHHHHHHHcCCCCCc
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN------ASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~------~~~~~~~~~~~g~~~~~ 219 (323)
+.|+.+|.+.+.+.+.++.+ +|++++++|||.+.++....... ........+....
T Consensus 147 -----------~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 211 (275)
T PRK08263 147 -----------GIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQW---- 211 (275)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHHH----
Confidence 34999999999998888765 58999999999998875421110 0001111111110
Q ss_pred cCcCCCc-ccHHHHHHHHHHhhcCCCCCccEEEE--cCccCHHHHHHHHHHHC
Q 020608 220 ENFFMGS-VHFKDVALAHILVYENPSACGRHLCV--EAISHYGDFVAKVAELY 269 (323)
Q Consensus 220 ~~~~~~~-i~v~D~a~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~i~~~~ 269 (323)
....+ ++++|+|++++.+++.+...+.|+++ +..+++.++.+.+.+.-
T Consensus 212 --~~~~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (275)
T PRK08263 212 --SERSVDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATWE 262 (275)
T ss_pred --HhccCCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHHH
Confidence 11224 78999999999999987776676653 35688889988888753
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=187.66 Aligned_cols=222 Identities=22% Similarity=0.167 Sum_probs=160.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+|+||||+|+||++++++|+++|++|++++|+..+.. .....+.....++.++.+|+.|.++++++++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAA--ATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999753322 2222233333468899999999999888775
Q ss_pred -CCCEEEEcccCCcc----CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccc-cCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIV----DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSI-TPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~-~~~~~~~~~~~~~e 146 (323)
.+|+|||+++.... ....+++...+++|+.++.++++++. +.+.++||++||..++ .+...
T Consensus 82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~--------- 152 (251)
T PRK12826 82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGYPG--------- 152 (251)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCCCC---------
Confidence 68999999987654 22344567789999999999999873 4456799999998554 22111
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
...|+.+|.+++.+++.++.+ .+++++++|||.++||........ ........+.+.
T Consensus 153 ------------~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~--~~~~~~~~~~~~------ 212 (251)
T PRK12826 153 ------------LAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDA--QWAEAIAAAIPL------ 212 (251)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCch--HHHHHHHhcCCC------
Confidence 134999999999999888765 489999999999999975432211 111122222211
Q ss_pred CCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcCc
Q 020608 224 MGSVHFKDVALAHILVYENPSA--CGR-HLCVEAI 255 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~~ 255 (323)
..+++++|+|+++..++..... .|+ +++.++.
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 213 GRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGA 247 (251)
T ss_pred CCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 1478999999999998875432 344 6665543
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=190.53 Aligned_cols=229 Identities=17% Similarity=0.094 Sum_probs=159.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
|+++++|||||||+||+++++.|+++|++|++++|+++..............+.+++++.+|++|++++++ ++
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 35688999999999999999999999999999998764332222111111113468899999999988765 33
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
.+|+|||||+...... ..+.+.+.+++|+.++.++++++ ++.+.+++|++||.++.++....
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~--------- 150 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFPGL--------- 150 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCCCC---------
Confidence 5799999998754321 22455677889999999998885 55567899999998666544321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHH---hCCccEEEEcCCCccCCCCCCCC----------chhHHHHHHHHcC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAK---EKGLDVVVVNPGTVMGPVIPPTL----------NASMLMLLRLLQG 214 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~~Rp~~v~G~~~~~~~----------~~~~~~~~~~~~g 214 (323)
..|+.+|...+.+++.++. .+|++++++|||.+++|...... ......+......
T Consensus 151 ------------~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (280)
T PRK06914 151 ------------SPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKH 218 (280)
T ss_pred ------------chhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHH
Confidence 3499999999999888863 35999999999999998532111 0001111111100
Q ss_pred CCCCccCcCCCcccHHHHHHHHHHhhcCCCCCccEEEE-cCccC
Q 020608 215 CTDTYENFFMGSVHFKDVALAHILVYENPSACGRHLCV-EAISH 257 (323)
Q Consensus 215 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~ 257 (323)
.......+++++|+|++++.+++++.....|+++ +..++
T Consensus 219 ----~~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (280)
T PRK06914 219 ----INSGSDTFGNPIDVANLIVEIAESKRPKLRYPIGKGVKLM 258 (280)
T ss_pred ----HhhhhhccCCHHHHHHHHHHHHcCCCCCcccccCCchHHH
Confidence 0111234789999999999999987765557775 44443
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=187.60 Aligned_cols=223 Identities=16% Similarity=0.103 Sum_probs=156.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+.+|+++||||+|+||++++++|+++|++|+++.|+..... .....+...+.+++++.+|++|.++++++++
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCE--ELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEAL 85 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 35679999999999999999999999999999988643221 2222222223467889999999999887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++. +.+.++||++||..++.+.+.
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~~---------- 155 (274)
T PRK07775 86 GEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRPH---------- 155 (274)
T ss_pred CCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCC----------
Confidence 5799999999754322 224556778999999999998864 334568999999855543321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCC-CCchhHHHHHHHHcCCCCCccCcC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPP-TLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
...|+.+|.+.|.+++.++.+. |++++++|||.+.++.... ........+....... +...
T Consensus 156 -----------~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~----~~~~ 220 (274)
T PRK07775 156 -----------MGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWG----QARH 220 (274)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhc----cccc
Confidence 1349999999999999988664 8999999999887663221 1111111111111100 1122
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCccEEEE
Q 020608 224 MGSVHFKDVALAHILVYENPSACGRHLCV 252 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~ 252 (323)
..++|++|+|++++.+++++..+..||+.
T Consensus 221 ~~~~~~~dva~a~~~~~~~~~~~~~~~~~ 249 (274)
T PRK07775 221 DYFLRASDLARAITFVAETPRGAHVVNME 249 (274)
T ss_pred ccccCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence 44899999999999999876544457764
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=189.75 Aligned_cols=223 Identities=20% Similarity=0.118 Sum_probs=156.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
.+|+||||||+|+||++++++|+++|++|+++.|++.+.. .+... ...++..+.+|++|.+++.++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~---~l~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 77 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARA---DFEAL--HPDRALARLLDVTDFDAIDAVVADAEATFG 77 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHH---HHHhh--cCCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5688999999999999999999999999999999753221 11111 12367889999999998887765
Q ss_pred CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++. +.+.+++|++||.++..+.+..
T Consensus 78 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~~~---------- 147 (277)
T PRK06180 78 PIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMPGI---------- 147 (277)
T ss_pred CCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCCCc----------
Confidence 5799999999754322 223456779999999999999853 3456799999998665543221
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCC----chhH---HHHHHHHcCCCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTL----NASM---LMLLRLLQGCTDT 218 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~----~~~~---~~~~~~~~g~~~~ 218 (323)
..|+.+|...|.+++.++.+ +|++++++|||.+.++...... .... ..........
T Consensus 148 -----------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 213 (277)
T PRK06180 148 -----------GYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAR--- 213 (277)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHH---
Confidence 44999999999999888765 4899999999999887432111 0000 0011110000
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCCCCccEEEEcCc
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPSACGRHLCVEAI 255 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~ 255 (323)
.......+..++|+|++++.+++.+.....|.++.+.
T Consensus 214 ~~~~~~~~~~~~dva~~~~~~l~~~~~~~~~~~g~~~ 250 (277)
T PRK06180 214 EAKSGKQPGDPAKAAQAILAAVESDEPPLHLLLGSDA 250 (277)
T ss_pred HhhccCCCCCHHHHHHHHHHHHcCCCCCeeEeccHHH
Confidence 0001123568999999999999877655456555443
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=185.51 Aligned_cols=224 Identities=19% Similarity=0.144 Sum_probs=156.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
|++++||||||+|+||++++++|+++|++|++++|++.+... ....+...+.+++++.+|++|.+++.++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAA--AAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH--HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999997643322 222222234578899999999998887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
.+|+|||+|+...... ..+.+...+++|+.++.++++.+ ++.+.++||++||..++++....
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~--------- 150 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSAGK--------- 150 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCc---------
Confidence 5799999999754322 23345567889999966555554 45567899999998666654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCch--------hHHHHHHHHcCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNA--------SMLMLLRLLQGCT 216 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~--------~~~~~~~~~~g~~ 216 (323)
+.|+.+|.+.+.+++.++.+ .+++++++|||.+++|........ ..........
T Consensus 151 ------------~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 215 (258)
T PRK12429 151 ------------AAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLL--- 215 (258)
T ss_pred ------------chhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHh---
Confidence 34999999999988887665 389999999999999864321100 0000000100
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
.......+++++|+|+++..++..... .|+ |+++++
T Consensus 216 --~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 216 --PLVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred --ccCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 011234599999999999999875432 345 566543
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=224.96 Aligned_cols=258 Identities=24% Similarity=0.231 Sum_probs=180.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC----CEEEEEecCCCcHHHHHHHhhc-c-------CCCCCeEEEEccCCC-----
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR----YTVHATVKNLSDERETAHLKAL-E-------GADTRLRLFQIDLLD----- 67 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~-~-------~~~~~~~~~~~Dl~~----- 67 (323)
.++|||||||||||++++++|++++ ++|+++.|........+.+.+. . ....+++++.+|+++
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 4789999999999999999999887 7999999976544333332211 0 112368999999974
Q ss_pred -HhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCC-------
Q 020608 68 -YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWP------- 139 (323)
Q Consensus 68 -~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~------- 139 (323)
.+.+..+..++|+|||+|+.... ..++......|+.|+.+++++|++.++++|+|+||.+++.......
T Consensus 1051 ~~~~~~~l~~~~d~iiH~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~~ 1127 (1389)
T TIGR03443 1051 SDEKWSDLTNEVDVIIHNGALVHW---VYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELVQ 1127 (1389)
T ss_pred CHHHHHHHHhcCCEEEECCcEecC---ccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhhh
Confidence 45567777899999999997643 2344555568999999999999988889999999996653211000
Q ss_pred -CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcC----
Q 020608 140 -ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQG---- 214 (323)
Q Consensus 140 -~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g---- 214 (323)
....+.|+.+..+. .....+.|+.||.++|.++..+.. .|++++++|||.|||+....... ...++..+.++
T Consensus 1128 ~~~~~~~e~~~~~~~-~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~-~~~~~~~~~~~~~~~ 1204 (1389)
T TIGR03443 1128 AGGAGIPESDDLMGS-SKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATN-TDDFLLRMLKGCIQL 1204 (1389)
T ss_pred ccCCCCCcccccccc-cccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCC-chhHHHHHHHHHHHh
Confidence 01234454433221 122346799999999999988764 59999999999999996543211 11222222222
Q ss_pred CCCCccCcCCCcccHHHHHHHHHHhhcCCCC---CccEEEE-cCccCHHHHHHHHHHH
Q 020608 215 CTDTYENFFMGSVHFKDVALAHILVYENPSA---CGRHLCV-EAISHYGDFVAKVAEL 268 (323)
Q Consensus 215 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~-~~~~~~~e~~~~i~~~ 268 (323)
.......+.++|++++|+|++++.++..+.. ...||++ +..+++.++++.+.+.
T Consensus 1205 ~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1205 GLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY 1262 (1389)
T ss_pred CCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh
Confidence 1122233457899999999999999876532 2248875 5578999999998764
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=185.56 Aligned_cols=238 Identities=21% Similarity=0.169 Sum_probs=166.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC--CCCeEEEEccCCCHhHHHHHhc---
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
.|++|++|||||+|+||++++++|+++|++|+++.|++.+.. ....++... ..++.++.+|++|+++++++++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLA--AAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAAT 81 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHH--HHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999999999999998753222 122222211 2467889999999998887766
Q ss_pred ----CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ----GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+|||+|+.... ....+.+...+++|+.++.++++++.+ .+.++|+++||.....+.+.
T Consensus 82 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~------ 155 (276)
T PRK05875 82 AWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHRW------ 155 (276)
T ss_pred HHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCCC------
Confidence 67999999986421 113344677899999999999988643 33459999999855432221
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
.+.|+.+|.+.|.+++.++.+. +++++++|||.+.++....... ............+
T Consensus 156 ---------------~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~---- 215 (276)
T PRK05875 156 ---------------FGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITE-SPELSADYRACTP---- 215 (276)
T ss_pred ---------------CcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccccc-CHHHHHHHHcCCC----
Confidence 1459999999999999988764 6999999999998875432111 1111112211111
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEE-cCcc----CHHHHHHHHHHHC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPSA--CGR-HLCV-EAIS----HYGDFVAKVAELY 269 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~-~~~~----~~~e~~~~i~~~~ 269 (323)
...+++++|+|+++..+++.+.. .|+ +++. +..+ +..|+++.+.+..
T Consensus 216 --~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 270 (276)
T PRK05875 216 --LPRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGAD 270 (276)
T ss_pred --CCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHH
Confidence 12267899999999999987543 244 6664 4444 7778877776543
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=182.69 Aligned_cols=221 Identities=21% Similarity=0.175 Sum_probs=151.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++++||||||+||||++++++|+++|++|++++|+..+. .......+... ...+.++.+|++|.+++.++++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAE-ADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999864321 11111222211 2357889999999998888776
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+|+...... ..+.+..++++|+.++.++++++... ..+.++++||.....+
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 149 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAERP------------- 149 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcCC-------------
Confidence 4799999999643221 23456778999999999999998542 2246666665422111
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
.. +.+.|+.+|..+|.+++.++.++ +++++++||+.++||...... ..........+.+. ..
T Consensus 150 --~~------~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~--~~~~~~~~~~~~~~------~~ 213 (249)
T PRK09135 150 --LK------GYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSF--DEEARQAILARTPL------KR 213 (249)
T ss_pred --CC------CchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccC--CHHHHHHHHhcCCc------CC
Confidence 11 11459999999999999998775 699999999999999754322 12222233333221 11
Q ss_pred cccHHHHHHHHHHhhcCC-CCCcc-EEEEc
Q 020608 226 SVHFKDVALAHILVYENP-SACGR-HLCVE 253 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~-~~~~~-~~~~~ 253 (323)
+.+++|+|+++..++... ...|. |++++
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~ 243 (249)
T PRK09135 214 IGTPEDIAEAVRFLLADASFITGQILAVDG 243 (249)
T ss_pred CcCHHHHHHHHHHHcCccccccCcEEEECC
Confidence 346899999997666543 23344 88754
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=176.96 Aligned_cols=297 Identities=18% Similarity=0.146 Sum_probs=217.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-----CCCCeEEEEccCCCHhHHHHHhc--CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-----ADTRLRLFQIDLLDYDAIAAAVT--GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~--~~ 78 (323)
|..||||-||.=|++|++.|+.+||+|.++.|+.+. ....+.+.+-. .+..+..+.+|++|...+.+++. ++
T Consensus 29 kvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSs-FNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ikP 107 (376)
T KOG1372|consen 29 KVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSS-FNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIKP 107 (376)
T ss_pred eEEEEecccCCCchHHHHHHHhCCceeeEEEeeccc-cchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccCc
Confidence 468999999999999999999999999999997653 22333333321 13467889999999999999988 56
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC---EEEEecccccccCCCCCCCCccccCCCCCChhhh
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK---RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC 155 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~ 155 (323)
+-|+|+|+.+++..+++-++-+-++...|+++|+++.+.++.. +|-..||. ..|+... +.|-+|.+|..|.
T Consensus 108 tEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstS-ElyGkv~---e~PQsE~TPFyPR-- 181 (376)
T KOG1372|consen 108 TEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTS-ELYGKVQ---EIPQSETTPFYPR-- 181 (376)
T ss_pred hhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccH-hhccccc---CCCcccCCCCCCC--
Confidence 8999999999888888888889999999999999999887632 66666665 8887654 6678899888776
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCCCCC--ccC--cCCCcccH
Q 020608 156 RQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGCTDT--YEN--FFMGSVHF 229 (323)
Q Consensus 156 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~~--~~~--~~~~~i~v 229 (323)
++|+.+|..+-.++..|.+.+++-.+.=-.++--.|.....+. .+.+-+.++-.|.... .|+ ..++|-|+
T Consensus 182 ----SPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA 257 (376)
T KOG1372|consen 182 ----SPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHA 257 (376)
T ss_pred ----ChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchh
Confidence 8899999999888888887787755554445555554432211 1111122222333222 333 35779999
Q ss_pred HHHHHHHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCC----------------------CCCCCcc
Q 020608 230 KDVALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKD----------------------TQPGLLR 287 (323)
Q Consensus 230 ~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~----------------------~~~~~~~ 287 (323)
.|-++|.+.++++.+.....+.+++..|++|+++......|..- .|.+. ++-....
T Consensus 258 ~dYVEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig~~l--~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~ 335 (376)
T KOG1372|consen 258 GDYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEVL--NWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDT 335 (376)
T ss_pred HHHHHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhCcEE--eecccccccccccCCceEEEEecccccCcchhhh
Confidence 99999999999887664333457999999999998887775310 11100 0111223
Q ss_pred ccccchhH-hhhCCcc-cCHHHHHHHHHHH
Q 020608 288 TKDGAKKL-MDLGLQF-IPMDQIIKDSVES 315 (323)
Q Consensus 288 ~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~ 315 (323)
..-|.+|+ +.|||+| .++.+-+++|++.
T Consensus 336 LqGdasKAk~~LgW~pkv~f~eLVkeMv~~ 365 (376)
T KOG1372|consen 336 LQGDASKAKKTLGWKPKVTFPELVKEMVAS 365 (376)
T ss_pred hcCChHHHHHhhCCCCccCHHHHHHHHHHh
Confidence 56799999 8899999 9999999999874
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=182.84 Aligned_cols=219 Identities=18% Similarity=0.142 Sum_probs=154.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh-------cC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV-------TG 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~ 77 (323)
||++|||||+|+||++++++|+++|++|+++.|+...... ....+.....++.++.+|+.|.+++++++ .+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEA--AAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHH--HHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999999999997533222 22222222346888999999999665544 36
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+|+|||+|+...... ..+.+...++.|+.++..+++++ ++.+.+++|++||.+++.+.+..
T Consensus 79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~~----------- 147 (255)
T TIGR01963 79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASPFK----------- 147 (255)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCCCC-----------
Confidence 799999998754322 22345677889999988888887 45667899999998555543221
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC----------
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT---------- 216 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~---------- 216 (323)
..|+.+|.+.+.+++.++.+ .+++++++||+.+++|..... +........
T Consensus 148 ----------~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 210 (255)
T TIGR01963 148 ----------SAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQ-------IADQAKTRGIPEEQVIREV 210 (255)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHH-------HHhhhcccCCCchHHHHHH
Confidence 34999999999998887765 389999999999999853210 000000000
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
...+....+++|++|+|++++.+++.... .|+ |++++
T Consensus 211 ~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~ 250 (255)
T TIGR01963 211 MLPGQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDG 250 (255)
T ss_pred HHccCccccCcCHHHHHHHHHHHcCccccCccceEEEEcC
Confidence 00122345699999999999999976422 344 77754
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=184.78 Aligned_cols=215 Identities=17% Similarity=0.113 Sum_probs=151.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+++||||+|+||++++++|+++|++|++.+|+.+... +..+.+...+.++.++.+|++|.+++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~--~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLR--QAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 67889999999999999999999999999999988753322 2233333323467889999999999887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCC-cCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALG-VKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++. +.+ .+++|++||..++.+.+..
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~~~-------- 153 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGL-------- 153 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCCCC--------
Confidence 4799999999753322 334567788999999999999874 333 4689999998665443221
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC-CCcc--
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT-DTYE-- 220 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~-~~~~-- 220 (323)
..|+.+|.+.+.+.+.++.+ .|+++++++||.+.++....... . .......... ...+
T Consensus 154 -------------~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~--~~~~~~~~~~~~~~~~~ 217 (275)
T PRK05876 154 -------------GAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSER-I--RGAACAQSSTTGSPGPL 217 (275)
T ss_pred -------------chHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhh-h--cCccccccccccccccc
Confidence 44999999866666666544 48999999999999885432100 0 0000000001 1111
Q ss_pred CcCCCcccHHHHHHHHHHhhcCC
Q 020608 221 NFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
....++++++|+|++++.++.++
T Consensus 218 ~~~~~~~~~~dva~~~~~ai~~~ 240 (275)
T PRK05876 218 PLQDDNLGVDDIAQLTADAILAN 240 (275)
T ss_pred cccccCCCHHHHHHHHHHHHHcC
Confidence 12345899999999999998764
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=180.38 Aligned_cols=221 Identities=13% Similarity=0.069 Sum_probs=158.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG----- 77 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 77 (323)
+++++++||||+|+||++++++|+++|++|+++.++.. ....+....+...+.++.++.+|++|.+++.+++++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK-EAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHF 82 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999987655432 222223333333345688999999999988877763
Q ss_pred --CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 78 --CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 78 --~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
+|+|||+|+...... ..+.+.+.+++|+.++.++++++.. .+.+++|++||..+..+....
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~--------- 153 (247)
T PRK12935 83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGFGQ--------- 153 (247)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCCCC---------
Confidence 799999999754321 2356778899999999999999853 345699999998665543211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+. ++++++++||.+.++..... ..........+. ...
T Consensus 154 ------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~---~~~~~~~~~~~~------~~~ 212 (247)
T PRK12935 154 ------------TNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEV---PEEVRQKIVAKI------PKK 212 (247)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhc---cHHHHHHHHHhC------CCC
Confidence 349999999999888887664 89999999999988753211 111122222221 123
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCccEEEEcC
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGRHLCVEA 254 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~ 254 (323)
.++|++|++++++.+++... .+..|++.++
T Consensus 213 ~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g 244 (247)
T PRK12935 213 RFGQADEIAKGVVYLCRDGAYITGQQLNINGG 244 (247)
T ss_pred CCcCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence 47899999999999987542 2334777654
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=188.29 Aligned_cols=203 Identities=16% Similarity=0.166 Sum_probs=148.0
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh------cC-CC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV------TG-CT 79 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------~~-~d 79 (323)
+||||||||+||++++++|+++|++|+++.|++++.. ..+++.+.+|++|++.+..++ ++ +|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~-----------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d 69 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA-----------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEIS 69 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc-----------CCCCccccccCCCHHHHHHHHhcccCcCCcee
Confidence 5899999999999999999999999999999875321 125667789999999999998 56 99
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
.|+|+++... +. .....+++++|++.|+++||++||.....+.
T Consensus 70 ~v~~~~~~~~-----~~--------~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~------------------------ 112 (285)
T TIGR03649 70 AVYLVAPPIP-----DL--------APPMIKFIDFARSKGVRRFVLLSASIIEKGG------------------------ 112 (285)
T ss_pred EEEEeCCCCC-----Ch--------hHHHHHHHHHHHHcCCCEEEEeeccccCCCC------------------------
Confidence 9999986421 10 2345689999999999999999987332210
Q ss_pred CchHHHHHHHHHHHHHHHHh-CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHc-CCCC-CccCcCCCcccHHHHHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKE-KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQ-GCTD-TYENFFMGSVHFKDVALAH 236 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~i~v~D~a~~~ 236 (323)
..+...|.++ ++ .|++++++||+.+++...... ....+.. +... ..+++.++|||++|+|+++
T Consensus 113 ----~~~~~~~~~l----~~~~gi~~tilRp~~f~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~v~~~Dva~~~ 178 (285)
T TIGR03649 113 ----PAMGQVHAHL----DSLGGVEYTVLRPTWFMENFSEEF------HVEAIRKENKIYSATGDGKIPFVSADDIARVA 178 (285)
T ss_pred ----chHHHHHHHH----HhccCCCEEEEeccHHhhhhcccc------cccccccCCeEEecCCCCccCcccHHHHHHHH
Confidence 0122233333 34 489999999999986532110 0111112 2211 1356778899999999999
Q ss_pred HHhhcCCCC-CccEEEE-cCccCHHHHHHHHHHHCCC
Q 020608 237 ILVYENPSA-CGRHLCV-EAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 237 ~~~~~~~~~-~~~~~~~-~~~~~~~e~~~~i~~~~~~ 271 (323)
..++..+.. ++.|+++ ++.+|+.|+++.+.+.+|.
T Consensus 179 ~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~ 215 (285)
T TIGR03649 179 YRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGR 215 (285)
T ss_pred HHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCC
Confidence 999987654 4458864 6889999999999999975
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=180.40 Aligned_cols=221 Identities=21% Similarity=0.170 Sum_probs=158.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.|++|+||||||+|+||++++++|+++|++|+++.|++.+... ....+...+.++.++.+|++|++++.++++
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEA--LAAELRAAGGEARVLVFDVSDEAAVRALIEAAVE 78 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHH--HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 77778999999999999999999999999999999997643221 222222234568899999999998877665
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
.+|+|||+||...... ..+.+...++.|+.++.++++++. +.+.+++|++||.+..++....
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~~~------- 151 (246)
T PRK05653 79 AFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNPGQ------- 151 (246)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCCCC-------
Confidence 4699999998754321 233456788999999999998884 4566899999998655433211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+++.++++ .+++++++||+.++++..... ............ .
T Consensus 152 --------------~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~---~~~~~~~~~~~~------~ 208 (246)
T PRK05653 152 --------------TNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGL---PEEVKAEILKEI------P 208 (246)
T ss_pred --------------cHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhh---hHHHHHHHHhcC------C
Confidence 34999999999988888765 489999999999999864321 111111111111 1
Q ss_pred CCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 223 FMGSVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
...+++++|+++++..++..... .|. +++++
T Consensus 209 ~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 242 (246)
T PRK05653 209 LGRLGQPEEVANAVAFLASDAASYITGQVIPVNG 242 (246)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcCccCCEEEeCC
Confidence 14478999999999999875332 344 55654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=181.79 Aligned_cols=221 Identities=18% Similarity=0.155 Sum_probs=157.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+.++.. +....+...+.++.++.+|++|.++++++++
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLA--AAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH--HHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999988753222 2223333323468889999999998888765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
.+|+|||+|+...... ..+.+...+++|+.++.++++++.+ .+.+++|++||.....+....
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~--------- 156 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARPGI--------- 156 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCCCCC---------
Confidence 4799999999754322 2344577888999999999999854 346799999998544332211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+ +|++++++|||.+.++....... .......+....+ ..
T Consensus 157 ------------~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~-~~~~~~~~~~~~~------~~ 217 (255)
T PRK07523 157 ------------APYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVA-DPEFSAWLEKRTP------AG 217 (255)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhcc-CHHHHHHHHhcCC------CC
Confidence 44999999999999988764 58999999999999986432111 1111112222211 12
Q ss_pred CcccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 225 GSVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
.+.+++|+|.+++.++..... .|+ +++.+
T Consensus 218 ~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~g 249 (255)
T PRK07523 218 RWGKVEELVGACVFLASDASSFVNGHVLYVDG 249 (255)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCcEEEECC
Confidence 367899999999999875432 344 55543
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=183.20 Aligned_cols=227 Identities=14% Similarity=0.066 Sum_probs=156.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++++||||||+|+||++++++|+++|++|++..|+... ........+...+.++.++.+|+++.+++.++++
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAE-EMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChH-HHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 44678999999999999999999999999999887765422 2222233333223457788999999988777655
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++.+. ..++||++||..++.+...
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 150 (252)
T PRK06077 81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPAYG---------- 150 (252)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCCCC----------
Confidence 5799999999753322 12234577899999999999998643 2358999999855543321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
.+.|+.+|...|.+++.++.++ ++.+.+++||.+.++.................... .....
T Consensus 151 -----------~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 214 (252)
T PRK06077 151 -----------LSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEKF-----TLMGK 214 (252)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHhc-----CcCCC
Confidence 1459999999999999988775 78999999999988753211000000000111100 01124
Q ss_pred cccHHHHHHHHHHhhcCCCCCc-cEEEEcC
Q 020608 226 SVHFKDVALAHILVYENPSACG-RHLCVEA 254 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~~~~-~~~~~~~ 254 (323)
+++++|+|++++.++..+...| .|++++.
T Consensus 215 ~~~~~dva~~~~~~~~~~~~~g~~~~i~~g 244 (252)
T PRK06077 215 ILDPEEVAEFVAAILKIESITGQVFVLDSG 244 (252)
T ss_pred CCCHHHHHHHHHHHhCccccCCCeEEecCC
Confidence 8999999999999997655444 4777543
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=181.80 Aligned_cols=215 Identities=20% Similarity=0.130 Sum_probs=155.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|+++||||+|+||++|+++|+++|++|+++.|+.+... +..+.+. .+.++.++.+|++|.++++++++
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~--~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAE--RVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAA 77 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHH--HHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999998753322 2222222 23468899999999998887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+|+...... ..+.+...+++|+.++.++.+.+ ++.+.++++++||.++.++....
T Consensus 78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~------- 150 (252)
T PRK06138 78 RWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRGR------- 150 (252)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCCc-------
Confidence 6899999999754321 33445677899999998877765 44566799999998776654321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch--hHHHHHHHHcCCCCCcc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA--SMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~--~~~~~~~~~~g~~~~~~ 220 (323)
+.|+.+|.+.+.+++.++.+. +++++++|||.++++........ ....+.....+.
T Consensus 151 --------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~----- 211 (252)
T PRK06138 151 --------------AAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR----- 211 (252)
T ss_pred --------------cHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc-----
Confidence 349999999999999987664 89999999999999863321100 001111111111
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
.....+++++|+|++++.++..+.
T Consensus 212 ~~~~~~~~~~d~a~~~~~l~~~~~ 235 (252)
T PRK06138 212 HPMNRFGTAEEVAQAALFLASDES 235 (252)
T ss_pred CCCCCCcCHHHHHHHHHHHcCchh
Confidence 011227899999999999998754
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-24 Score=169.79 Aligned_cols=211 Identities=19% Similarity=0.201 Sum_probs=158.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+.+|.++|||||++||.+++++|++.|++|++..|+.+..+ +...++.. ..+..+..|++|+++++++++
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~--~la~~~~~--~~~~~~~~DVtD~~~~~~~i~~~~~~~ 79 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLE--ALADEIGA--GAALALALDVTDRAAVEAAIEALPEEF 79 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHH--HHHHhhcc--CceEEEeeccCCHHHHHHHHHHHHHhh
Confidence 45688999999999999999999999999999999753222 22233322 368899999999988665544
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|++|||||...... ..++|..++++|+.|..+..++. .+.+.+++|++||+++.+..++.
T Consensus 80 g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~--------- 150 (246)
T COG4221 80 GRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGG--------- 150 (246)
T ss_pred CcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCC---------
Confidence 6899999999875422 56789999999999999999986 34555699999999887776643
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC-chhHHHHHHHHcCCCCCccCcC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL-NASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
+.|+.+|.+...+.+.+.++. +++++.+-||.+-+....... ............+
T Consensus 151 ------------~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~~--------- 209 (246)
T COG4221 151 ------------AVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYKG--------- 209 (246)
T ss_pred ------------ccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhcc---------
Confidence 449999999999888887764 899999999999664222111 0011112221111
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCc
Q 020608 224 MGSVHFKDVALAHILVYENPSACG 247 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~~~ 247 (323)
..++.++|+|+++.++++.|..-.
T Consensus 210 ~~~l~p~dIA~~V~~~~~~P~~vn 233 (246)
T COG4221 210 GTALTPEDIAEAVLFAATQPQHVN 233 (246)
T ss_pred CCCCCHHHHHHHHHHHHhCCCccc
Confidence 236789999999999999887643
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=183.17 Aligned_cols=228 Identities=20% Similarity=0.120 Sum_probs=156.1
Q ss_pred CC-CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MS-KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~-~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|+ +++|+++||||+||||++++++|+++|++|+++.|+.+.. .......+...+.++.++.+|++|++++.++++
T Consensus 1 ~~~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 1 MGDLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPR-ANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CCCCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHh-HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 44 5668999999999999999999999999999998875321 111222222223467889999999998877665
Q ss_pred ----CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 77 ----GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
++|+|||+|+.... ...++...+++|+.++.++++++.+. ..+++|++||..+.+... .+..+.
T Consensus 80 ~~~~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~--------~~~~~~ 149 (248)
T PRK07806 80 EEFGGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT--------VKTMPE 149 (248)
T ss_pred HhCCCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc--------ccCCcc
Confidence 58999999986422 22345678899999999999998764 235899999964432111 011111
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc-hhHHHHHHHHcCCCCCccCcCCCc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN-ASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
..+|+.+|.++|.+++.++.+ .++++++++|+.+-+|....... ........ .. .+ ...+
T Consensus 150 --------~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~----~~--~~--~~~~ 213 (248)
T PRK07806 150 --------YEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAIEA----RR--EA--AGKL 213 (248)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCCHHHHHH----HH--hh--hccc
Confidence 145999999999999988765 48999999999887763211000 00000000 00 01 1248
Q ss_pred ccHHHHHHHHHHhhcCCCCCcc-EEEEcCc
Q 020608 227 VHFKDVALAHILVYENPSACGR-HLCVEAI 255 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~~~~~-~~~~~~~ 255 (323)
++++|+|++++.+++.....|. |++++..
T Consensus 214 ~~~~dva~~~~~l~~~~~~~g~~~~i~~~~ 243 (248)
T PRK07806 214 YTVSEFAAEVARAVTAPVPSGHIEYVGGAD 243 (248)
T ss_pred CCHHHHHHHHHHHhhccccCccEEEecCcc
Confidence 8999999999999987655565 7776543
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-24 Score=184.01 Aligned_cols=223 Identities=17% Similarity=0.140 Sum_probs=159.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++..|+.+.....+..+.+...+.++.++.+|++|.++++++++
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999988877543322222223333334567889999999988877664
Q ss_pred -CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 -GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++... ..++||++||..++.+....
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~~---------- 202 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPTL---------- 202 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCCCc----------
Confidence 689999999964321 144568889999999999999998653 23599999998665443321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.+|....... .......+....+ ...
T Consensus 203 -----------~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~-~~~~~~~~~~~~p------~~r 264 (300)
T PRK06128 203 -----------LDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQ-PPEKIPDFGSETP------MKR 264 (300)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCC-CHHHHHHHhcCCC------CCC
Confidence 33999999999999998876 48999999999999986432111 1112222222211 122
Q ss_pred cccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 226 SVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
+.+++|+|.+++.++..... .|+ +++.+
T Consensus 265 ~~~p~dva~~~~~l~s~~~~~~~G~~~~v~g 295 (300)
T PRK06128 265 PGQPVEMAPLYVLLASQESSYVTGEVFGVTG 295 (300)
T ss_pred CcCHHHHHHHHHHHhCccccCccCcEEeeCC
Confidence 56899999999999875432 344 56654
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=179.85 Aligned_cols=219 Identities=17% Similarity=0.084 Sum_probs=152.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+++||||+|+||++++++|+++|++|++++|+.. ..+..+++...+.++.++.+|++|.+++.++++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL---VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH---HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999988642 112223332224467889999999988776655
Q ss_pred -CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||.... ....+.+...+++|+.++..+++.+ ++.+.++||++||...+ +..
T Consensus 83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~-~~~---------- 151 (260)
T PRK12823 83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATR-GIN---------- 151 (260)
T ss_pred CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCcccc-CCC----------
Confidence 57999999985321 1244566778899999888766665 34556799999998543 111
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCC--------C--CchhHHHHHHHHc
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPP--------T--LNASMLMLLRLLQ 213 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~--------~--~~~~~~~~~~~~~ 213 (323)
..+|+.+|.+.+.+++.++.+. |+++++++||.+++|.... . ......+......
T Consensus 152 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T PRK12823 152 ------------RVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLD 219 (260)
T ss_pred ------------CCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhc
Confidence 0349999999999999988775 8999999999999984210 0 0001111222222
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
+.+. ..+.+++|+|+++..++.... ..|+ +++.+
T Consensus 220 ~~~~------~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~g 256 (260)
T PRK12823 220 SSLM------KRYGTIDEQVAAILFLASDEASYITGTVLPVGG 256 (260)
T ss_pred cCCc------ccCCCHHHHHHHHHHHcCcccccccCcEEeecC
Confidence 2111 125589999999999987543 2343 56644
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=180.32 Aligned_cols=231 Identities=19% Similarity=0.098 Sum_probs=164.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
++++|||||+|+||++++++|+++|++|++++|++.... ...+.+. ..+++++.+|++|.+++..+++ +
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~--~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALA--AFADALG--DARFVPVACDLTDAASLAAALANAAAERGP 77 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999998753322 2222221 2368889999999998877665 4
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+|+|||++|...... ..+.+...+++|+.++.++++++. +.+.+++|++||....... ..
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-~~----------- 145 (257)
T PRK07074 78 VDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAAL-GH----------- 145 (257)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCC-CC-----------
Confidence 799999999754321 223345667899999999998873 3456789999997433211 10
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
..|+.+|.+.+.+++.++.++ |++++++|||.++++...........+....... ....++
T Consensus 146 ----------~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~------~~~~~~ 209 (257)
T PRK07074 146 ----------PAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKW------YPLQDF 209 (257)
T ss_pred ----------cccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhc------CCCCCC
Confidence 239999999999999988664 7999999999999986432111111222222111 122458
Q ss_pred ccHHHHHHHHHHhhcCCC--CCcc-EEEE-cCccCHHHHHHHHHH
Q 020608 227 VHFKDVALAHILVYENPS--ACGR-HLCV-EAISHYGDFVAKVAE 267 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~--~~~~-~~~~-~~~~~~~e~~~~i~~ 267 (323)
+|++|++++++.++.... ..|+ +++. +...+.+|+++.+.+
T Consensus 210 ~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 210 ATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 999999999999997532 2455 4454 556789999988765
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-24 Score=180.42 Aligned_cols=220 Identities=20% Similarity=0.188 Sum_probs=155.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|++|||||+|+||++++++|+++|++|++++|+..+. .......+.....++.++.+|++|.+++.++++ .
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE-LAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH-HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999998864322 112222222223468899999999988777654 5
Q ss_pred CCEEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHHhhC-----C-----cCEEEEecccccccCCCCCCCC
Q 020608 78 CTGVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAAKAL-----G-----VKRVVVTSSISSITPSPKWPAD 141 (323)
Q Consensus 78 ~d~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~-----~~~~v~~SS~~~~~~~~~~~~~ 141 (323)
+|+|||+||..... .+.+.+...+++|+.++.++++++... + .+++|++||..+.++....
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~--- 157 (256)
T PRK12745 81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNR--- 157 (256)
T ss_pred CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCCC---
Confidence 79999999875321 133566788999999999999987432 1 4679999998666544321
Q ss_pred ccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC
Q 020608 142 KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT 218 (323)
Q Consensus 142 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 218 (323)
+.|+.+|.+.|.+++.++.+ +|++++++|||.++++...... .........+..
T Consensus 158 ------------------~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~---~~~~~~~~~~~~-- 214 (256)
T PRK12745 158 ------------------GEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVT---AKYDALIAKGLV-- 214 (256)
T ss_pred ------------------cccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccc---hhHHhhhhhcCC--
Confidence 44999999999999998865 5899999999999997643211 111111111111
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
+ ...+.+++|+++++..++..... .|. |++.+.
T Consensus 215 -~--~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg 250 (256)
T PRK12745 215 -P--MPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGG 250 (256)
T ss_pred -C--cCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCC
Confidence 1 12367999999999988865422 343 666543
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=178.30 Aligned_cols=218 Identities=17% Similarity=0.136 Sum_probs=157.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+++||||+|+||++++++|+++|++|+++.|+..... ...+.+.....++.++.+|++|.++++++++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAE--RVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998753222 1222222223467789999999998877665
Q ss_pred --CCCEEEEcccCCcc-------CCCCCchhhhhhHHHHHHHHHHHHHhhC----CcCEEEEecccccccCCCCCCCCcc
Q 020608 77 --GCTGVFHLASPCIV-------DKVEDPQNQLLNPAVKGTVNVLTAAKAL----GVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 --~~d~Vih~a~~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
.+|+|||+||.... ....+.+...+++|+.++.++++++... +.++||++||.+++.+.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------- 152 (250)
T PRK07774 81 FGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWLYS-------- 152 (250)
T ss_pred hCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccCCc--------
Confidence 57999999997531 1133456678899999999999998643 35699999998554321
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
+.|+.+|.+.|.+++.+++++ ++++++++||.+.++...... .......+.++.+.
T Consensus 153 ----------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~~~--- 211 (250)
T PRK07774 153 ----------------NFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVT--PKEFVADMVKGIPL--- 211 (250)
T ss_pred ----------------cccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccC--CHHHHHHHHhcCCC---
Confidence 349999999999999998774 799999999999888654221 11223333333321
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
..+.+++|+|++++.++.... ..|+ |++.+
T Consensus 212 ---~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~ 244 (250)
T PRK07774 212 ---SRMGTPEDLVGMCLFLLSDEASWITGQIFNVDG 244 (250)
T ss_pred ---CCCcCHHHHHHHHHHHhChhhhCcCCCEEEECC
Confidence 124579999999999987642 2344 77654
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=174.38 Aligned_cols=183 Identities=32% Similarity=0.353 Sum_probs=139.3
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcccC
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLASP 87 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a~~ 87 (323)
|+|+||||++|++++++|+++|++|+++.|++.+... ..+++++.+|+.|++++.++++++|+|||+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 7999999999999999999999999999998653332 358999999999999999999999999999975
Q ss_pred CccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHH
Q 020608 88 CIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKT 167 (323)
Q Consensus 88 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~ 167 (323)
... ....+.++++++++.+++++|++||.+.+.... .....+..+.. ..|...|.
T Consensus 71 ~~~-------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~----~~~~~~~~~~~--------~~~~~~~~ 125 (183)
T PF13460_consen 71 PPK-------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPP----GLFSDEDKPIF--------PEYARDKR 125 (183)
T ss_dssp TTT-------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCT----SEEEGGTCGGG--------HHHHHHHH
T ss_pred hcc-------------cccccccccccccccccccceeeeccccCCCCC----cccccccccch--------hhhHHHHH
Confidence 211 177889999999999999999999995544332 11112211111 23888888
Q ss_pred HHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 168 LAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 168 ~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.+|+.+. +.+++++++||+.+||+...... . ... .+.....+||.+|+|++++.++++
T Consensus 126 ~~e~~~~----~~~~~~~ivrp~~~~~~~~~~~~--~-------~~~----~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 126 EAEEALR----ESGLNWTIVRPGWIYGNPSRSYR--L-------IKE----GGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp HHHHHHH----HSTSEEEEEEESEEEBTTSSSEE--E-------ESS----TSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred HHHHHHH----hcCCCEEEEECcEeEeCCCccee--E-------Eec----cCCCCcCcCCHHHHHHHHHHHhCC
Confidence 8887773 56999999999999998743111 0 000 123344699999999999998863
|
... |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=185.84 Aligned_cols=222 Identities=16% Similarity=0.097 Sum_probs=158.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.++++++|||||+|+||++++++|+++|++|++++|+..... +....+ ...+.++.+|++|.++++++++
T Consensus 2 ~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~--~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (257)
T PRK07067 2 MRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARAR--LAALEI---GPAAIAVSLDVTRQDSIDRIVAAAVE 76 (257)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH--HHHHHh---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999988753322 222222 2358889999999998887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC----C-cCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL----G-VKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
.+|+|||+|+...... ..+.+...+++|+.++.++++++... + .+++|++||....++...
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------- 149 (257)
T PRK07067 77 RFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEAL------- 149 (257)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCCC-------
Confidence 5799999999753321 33567788999999999999998542 1 258999999855544321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchh--------HHHHHHHHc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNAS--------MLMLLRLLQ 213 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~--------~~~~~~~~~ 213 (323)
...|+.+|.+.+.+++.++.+ +|+++++++||.+++|......... .......
T Consensus 150 --------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-- 213 (257)
T PRK07067 150 --------------VSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLV-- 213 (257)
T ss_pred --------------CchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHH--
Confidence 144999999999999888765 5899999999999998643210000 0000000
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCCCC---CccEEEEcC
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENPSA---CGRHLCVEA 254 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~~ 254 (323)
+ .+.....+++++|+|+++..++..... +..+++.++
T Consensus 214 ~----~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 253 (257)
T PRK07067 214 G----EAVPLGRMGVPDDLTGMALFLASADADYIVAQTYNVDGG 253 (257)
T ss_pred h----hcCCCCCccCHHHHHHHHHHHhCcccccccCcEEeecCC
Confidence 0 111234588999999999999976432 334777543
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=179.88 Aligned_cols=223 Identities=20% Similarity=0.160 Sum_probs=159.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.++++++|||||+|+||++++++|+++|++|++++|++.+... ....+.. ..++.++.+|+.|.+++.++++
T Consensus 1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (251)
T PRK07231 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAER--VAAEILA-GGRAIAVAADVSDEADVEAAVAAALE 77 (251)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH--HHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999998643222 2222222 3468899999999999887765
Q ss_pred ---CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+|+..... .+.+.+...+++|+.++.++++.+.. .+.++||++||.+++.+....
T Consensus 78 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------ 151 (251)
T PRK07231 78 RFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPGL------ 151 (251)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCCCc------
Confidence 579999999874321 13455678899999998888887643 556799999999666544321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch-hHHHHHHHHcCCCCCcc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA-SMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~-~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|...+.+++.++.++ +++++.++||.+.++........ .......+..+.
T Consensus 152 ---------------~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~----- 211 (251)
T PRK07231 152 ---------------GWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATI----- 211 (251)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCC-----
Confidence 349999999999888887653 89999999999988753321110 001111121211
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCCC--CccEE-EEc
Q 020608 221 NFFMGSVHFKDVALAHILVYENPSA--CGRHL-CVE 253 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~~--~~~~~-~~~ 253 (323)
....+++++|+|.+++.++..... .|.++ +.+
T Consensus 212 -~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~g 246 (251)
T PRK07231 212 -PLGRLGTPEDIANAALFLASDEASWITGVTLVVDG 246 (251)
T ss_pred -CCCCCcCHHHHHHHHHHHhCccccCCCCCeEEECC
Confidence 122378999999999999975432 35544 443
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=181.34 Aligned_cols=230 Identities=18% Similarity=0.143 Sum_probs=161.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+|+++++|||||+|+||++++++|+++|++|++++|+++.. +..+.+...+.++.++.+|+++.++++++++
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD---EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH---HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 56788999999999999999999999999999999876443 2233333334578899999999998887765
Q ss_pred --CCCEEEEcccCCccC---CCCCchhhhhhHHHHHHHHHHHHHhh---CCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 --GCTGVFHLASPCIVD---KVEDPQNQLLNPAVKGTVNVLTAAKA---LGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+|||+||..... ...+.+...+++|+.++.++++.+.. .+.++||++||..+.++....
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~---------- 150 (258)
T PRK08628 81 FGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQGGT---------- 150 (258)
T ss_pred cCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCCCC----------
Confidence 579999999964321 12255778899999999999888743 234689999998666543321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCCccCc
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|...+.+++.++.+ ++++++.++||.+++|...... .........+.... ..+
T Consensus 151 -----------~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~~~-- 215 (258)
T PRK08628 151 -----------SGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKI--PLG-- 215 (258)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcC--Ccc--
Confidence 34999999999999988764 4899999999999998532110 00001111111111 111
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcCccCHHH
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCVEAISHYGD 260 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~~~~~~e 260 (323)
..++.++|+|++++.++.... ..|. +.+.+....+++
T Consensus 216 -~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~~~ 255 (258)
T PRK08628 216 -HRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGYVHLDR 255 (258)
T ss_pred -ccCCCHHHHHHHHHHHhChhhccccCceEEecCCcccccc
Confidence 136789999999999997642 3455 445554444443
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=181.17 Aligned_cols=213 Identities=18% Similarity=0.146 Sum_probs=153.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|-+++|++|||||+|+||++++++|+++|++|++++|++... ....+.+.....++.++.+|++|.++++++++
T Consensus 1 ~~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 1 MLLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERL--DEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 667889999999999999999999999999999999875322 22223333223468899999999998877664
Q ss_pred ---CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+|+.... ....+.+...+++|+.++..+++++... ..++||++||.....+....
T Consensus 79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~------- 151 (258)
T PRK07890 79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQPKY------- 151 (258)
T ss_pred HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCCCc-------
Confidence 57999999986432 1234567888999999999999998542 23599999998654433211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc--------hhHHHHHHHHcC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN--------ASMLMLLRLLQG 214 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~--------~~~~~~~~~~~g 214 (323)
..|+.+|.+.+.+++.++.+ .+++++++|||.+++|....... ..........+.
T Consensus 152 --------------~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (258)
T PRK07890 152 --------------GAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN 217 (258)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc
Confidence 34999999999999998865 38999999999999986321100 000111111111
Q ss_pred CCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 215 CTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 215 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
. ....+.+++|+|++++.++..
T Consensus 218 ~------~~~~~~~~~dva~a~~~l~~~ 239 (258)
T PRK07890 218 S------DLKRLPTDDEVASAVLFLASD 239 (258)
T ss_pred C------CccccCCHHHHHHHHHHHcCH
Confidence 1 112367899999999999874
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=178.18 Aligned_cols=228 Identities=20% Similarity=0.254 Sum_probs=154.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC-HhHHHHHh-cCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD-YDAIAAAV-TGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~-~~~d~V 81 (323)
.+|+||||||||+||++++++|+++|++|+++.|++++... . +.. ..+++++.+|++| .+++.+.+ .++|+|
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~---~--~~~-~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v 89 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKT---S--LPQ-DPSLQIVRADVTEGSDKLVEAIGDDSDAV 89 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHH---h--ccc-CCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence 57899999999999999999999999999999987532211 1 111 2368899999998 46777777 689999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
||+++.... . ++...+++|..++.++++++++.++++||++||.++ |+... +.+..+... . ......
T Consensus 90 i~~~g~~~~---~-~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v-~g~~~---~~~~~~~~~--~---~~~~~~ 156 (251)
T PLN00141 90 ICATGFRRS---F-DPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILV-NGAAM---GQILNPAYI--F---LNLFGL 156 (251)
T ss_pred EECCCCCcC---C-CCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccc-cCCCc---ccccCcchh--H---HHHHHH
Confidence 999886321 1 223346789999999999999988999999999954 43211 111111100 0 000022
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhc
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
|..+|..+|++++ +.+++++++||+.++++....... ...+ ......+|+.+|+|+++..++.
T Consensus 157 ~~~~k~~~e~~l~----~~gi~~~iirpg~~~~~~~~~~~~--------~~~~-----~~~~~~~i~~~dvA~~~~~~~~ 219 (251)
T PLN00141 157 TLVAKLQAEKYIR----KSGINYTIVRPGGLTNDPPTGNIV--------MEPE-----DTLYEGSISRDQVAEVAVEALL 219 (251)
T ss_pred HHHHHHHHHHHHH----hcCCcEEEEECCCccCCCCCceEE--------ECCC-----CccccCcccHHHHHHHHHHHhc
Confidence 4456777777653 568999999999999864321100 0000 0011237999999999999998
Q ss_pred CCCCCc-cEEEE----cCccCHHHHHHHHHH
Q 020608 242 NPSACG-RHLCV----EAISHYGDFVAKVAE 267 (323)
Q Consensus 242 ~~~~~~-~~~~~----~~~~~~~e~~~~i~~ 267 (323)
.+...+ .+.+. +...++.++...+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 220 CPESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred ChhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 766533 35443 224788999887765
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=177.16 Aligned_cols=209 Identities=20% Similarity=0.187 Sum_probs=153.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc-HHHHHH-HhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD-ERETAH-LKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+++||||+|+||++++++|+++|++|+++.|...+ ....+. ...+...+.+++++.+|++|.++++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998764332 222221 22222234578899999999998887764
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh-----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK-----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++. +.+.+++|++||..++++....
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------ 157 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQ------ 157 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCCCCC------
Confidence 589999999975421 2334567789999999999999987 4556799999998776654321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.+ .+++++++|||.+++|....... . .......+
T Consensus 158 ---------------~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~--~---~~~~~~~~----- 212 (249)
T PRK12827 158 ---------------VNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAP--T---EHLLNPVP----- 212 (249)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccch--H---HHHHhhCC-----
Confidence 34999999999998888765 38999999999999986543211 0 11111111
Q ss_pred cCCCcccHHHHHHHHHHhhcCC
Q 020608 222 FFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
...+.+++|+|+++..++...
T Consensus 213 -~~~~~~~~~va~~~~~l~~~~ 233 (249)
T PRK12827 213 -VQRLGEPDEVAALVAFLVSDA 233 (249)
T ss_pred -CcCCcCHHHHHHHHHHHcCcc
Confidence 112458899999999988653
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=175.59 Aligned_cols=222 Identities=19% Similarity=0.176 Sum_probs=157.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||||+||+++++.|+++|++|+++.|+.... .......+.....++.++.+|+++.+++.++++
T Consensus 1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 1 MSLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAG-AEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 677889999999999999999999999999998888865321 112222222224578889999999998877665
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+|+...... ..+.+...+++|+.++.++++++.. .+.+++|++||..++++....
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~~~------- 152 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQ------- 152 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCCCC-------
Confidence 5799999999754321 2334567788999999999998854 345689999998666654321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+++.++++ .+++++++|||.+.++..... ............+
T Consensus 153 --------------~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~---~~~~~~~~~~~~~------ 209 (248)
T PRK05557 153 --------------ANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDAL---PEDVKEAILAQIP------ 209 (248)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccccc---ChHHHHHHHhcCC------
Confidence 34999999999888877654 389999999999877653321 1112222222211
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
...+++++|++.++..++.... ..|+ +++.+
T Consensus 210 ~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~ 243 (248)
T PRK05557 210 LGRLGQPEEIASAVAFLASDEAAYITGQTLHVNG 243 (248)
T ss_pred CCCCcCHHHHHHHHHHHcCcccCCccccEEEecC
Confidence 1226789999999998886522 2344 56643
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=180.92 Aligned_cols=216 Identities=19% Similarity=0.130 Sum_probs=151.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
|++|+++||||+|+||++++++|+++|++|+++.|+.+.. ..... .+++++.+|++|.++++++++
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l---~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKM---EDLAS-----LGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHh-----CCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999999999999875321 11111 257889999999999888776
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHH----HHhhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLT----AAKALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||...... ..+.+...+++|+.++..+++ .+++.+.+++|++||.++..+.+.
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~---------- 142 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTPL---------- 142 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCCCC----------
Confidence 6899999999754322 345677889999999655555 445666679999999754332211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCC---------chhHH----HHHHH
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTL---------NASML----MLLRL 211 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~---------~~~~~----~~~~~ 211 (323)
...|+.+|.+.+.+.+.++.+ +|++++++|||.+.+|...... ..... ....+
T Consensus 143 -----------~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (273)
T PRK06182 143 -----------GAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASM 211 (273)
T ss_pred -----------ccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHH
Confidence 134999999999988777644 5899999999999998532100 00000 00011
Q ss_pred HcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCccEEEEc
Q 020608 212 LQGCTDTYENFFMGSVHFKDVALAHILVYENPSACGRHLCVE 253 (323)
Q Consensus 212 ~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~ 253 (323)
... .....+.+++|+|++++.++........|+++.
T Consensus 212 ~~~------~~~~~~~~~~~vA~~i~~~~~~~~~~~~~~~g~ 247 (273)
T PRK06182 212 RST------YGSGRLSDPSVIADAISKAVTARRPKTRYAVGF 247 (273)
T ss_pred HHh------hccccCCCHHHHHHHHHHHHhCCCCCceeecCc
Confidence 000 011236789999999999998654444566543
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=177.55 Aligned_cols=219 Identities=18% Similarity=0.132 Sum_probs=156.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+||||||+|+||++++++|+++|++|+++.|+.. ....+... ..+.++.++.+|+++.+++.++++
T Consensus 1 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~-~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (248)
T TIGR01832 1 FSLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP-SETQQQVE---ALGRRFLSLTADLSDIEAIKALVDSAVE 76 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHH---hcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999988642 12122222 223468899999999998876654
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||...... ..+.+.+.+++|+.++.++++++.. .+ .+++|++||..++.+....
T Consensus 77 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~------ 150 (248)
T TIGR01832 77 EFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGIRV------ 150 (248)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCCCC------
Confidence 5899999999754321 2345677899999999999998743 33 4699999998655433211
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+.++....... .......... . .+
T Consensus 151 ---------------~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~-~---~~- 209 (248)
T TIGR01832 151 ---------------PSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRA-DEDRNAAILE-R---IP- 209 (248)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhcccc-ChHHHHHHHh-c---CC-
Confidence 239999999999999998774 8999999999999885431110 0011111111 1 11
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
...+++++|+|++++.++.... ..|+++.
T Consensus 210 -~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~ 240 (248)
T TIGR01832 210 -AGRWGTPDDIGGPAVFLASSASDYVNGYTLA 240 (248)
T ss_pred -CCCCcCHHHHHHHHHHHcCccccCcCCcEEE
Confidence 1247899999999999997533 2456554
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=182.32 Aligned_cols=171 Identities=14% Similarity=0.082 Sum_probs=129.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+..... +....+...+.++.++.+|++|.++++++++
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALD--RAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHH--HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999998653222 2222232223468889999999999888776
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCc------CEEEEecccccccCCCCCCCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGV------KRVVVTSSISSITPSPKWPAD 141 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~------~~~v~~SS~~~~~~~~~~~~~ 141 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++ .+.+. +++|++||.+++++....
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~--- 158 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAM--- 158 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCC---
Confidence 4799999999865422 33556778999999999988774 33332 589999998666543221
Q ss_pred ccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-----CccEEEEcCCCccCCC
Q 020608 142 KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-----GLDVVVVNPGTVMGPV 196 (323)
Q Consensus 142 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~Rp~~v~G~~ 196 (323)
..|+.+|.+.+.+++.++.++ ++++..+.||.+..+.
T Consensus 159 ------------------~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~ 200 (287)
T PRK06194 159 ------------------GIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGI 200 (287)
T ss_pred ------------------cchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcc
Confidence 349999999999999887764 4777888888876653
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=176.05 Aligned_cols=221 Identities=19% Similarity=0.158 Sum_probs=153.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEE-ecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHAT-VKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++++++||||+|+||++++++|+++|++|+++ .|+. .........+...+..++++.+|++|.+++.++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNK--QAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999775 4543 22222222332223468889999999999887665
Q ss_pred --------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCc
Q 020608 77 --------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 --------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++.+. ..+++|++||..++.+....
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~~~---- 157 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFTGS---- 157 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCCCC----
Confidence 4899999999754322 22334677889999999999998653 33599999998555433211
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.+ .++++++++||.+++|........ .. +........
T Consensus 158 -----------------~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~-~~-~~~~~~~~~--- 215 (254)
T PRK12746 158 -----------------IAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDD-PE-IRNFATNSS--- 215 (254)
T ss_pred -----------------cchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccC-hh-HHHHHHhcC---
Confidence 34999999999998888765 489999999999999864321100 01 111111111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCCC---CccEEEEc
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPSA---CGRHLCVE 253 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~~~~~~ 253 (323)
....+++++|+|+++..++..... +..|++.+
T Consensus 216 --~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~ 250 (254)
T PRK12746 216 --VFGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSG 250 (254)
T ss_pred --CcCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCC
Confidence 112367899999999988875432 33477654
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=175.75 Aligned_cols=221 Identities=19% Similarity=0.155 Sum_probs=154.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEE-ecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHAT-VKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
|++++++||||+|+||++++++|+++|++|+++ .|+... ..+..+.+...+.++.++.+|++|+++++++++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKA--AEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEE 79 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999998764 555322 222223333334568889999999998887776
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.+|+|||+|+...... ..+.+...+++|+.++.++++++.. .+.++||++||..+..+....
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~-------- 151 (250)
T PRK08063 80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLENY-------- 151 (250)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCc--------
Confidence 5799999998753322 2234456788999999999999854 345699999998554433211
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+ .++++++++||.+.++....... ............ + .
T Consensus 152 -------------~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~-~~~~~~~~~~~~----~--~ 211 (250)
T PRK08063 152 -------------TTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPN-REELLEDARAKT----P--A 211 (250)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccC-chHHHHHHhcCC----C--C
Confidence 34999999999999888765 48999999999998875432111 111111111111 1 1
Q ss_pred CCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 224 MGSVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
..+++++|+|++++.++..+.. .|+ +++.+
T Consensus 212 ~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 244 (250)
T PRK08063 212 GRMVEPEDVANAVLFLCSPEADMIRGQTIIVDG 244 (250)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence 2368999999999999876432 344 45544
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-24 Score=182.23 Aligned_cols=221 Identities=20% Similarity=0.163 Sum_probs=153.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
++++++|||||+|+||++++++|+++|++|+++.|++..... ....... .++.++.+|++|+++++++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAA--TAARLPG--AKVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH--HHHHHhc--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999997532221 1111211 156889999999998877664
Q ss_pred -CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHh----hCCc-CEEEEecccccccCCCCCCCCcccc
Q 020608 77 -GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGV-KRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+|+..... ...+.+.+.+++|+.++.++++++. ..+. ++++++||.++..+.+..
T Consensus 85 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~~------- 157 (264)
T PRK12829 85 GGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPGR------- 157 (264)
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCCCC-------
Confidence 689999999975221 1334567889999999999999873 3344 578888887555443321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch--------hHHHHHHHHcC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA--------SMLMLLRLLQG 214 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~--------~~~~~~~~~~g 214 (323)
..|+.+|.+.|.+++.++.+. +++++++|||.++||........ ...........
T Consensus 158 --------------~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (264)
T PRK12829 158 --------------TPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEK 223 (264)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhc
Confidence 339999999999998887653 89999999999999864211000 00000000110
Q ss_pred CCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 215 CTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 215 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.....+++++|+|.++..++.... ..|+ |+++++
T Consensus 224 ------~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g 260 (264)
T PRK12829 224 ------ISLGRMVEPEDIAATALFLASPAARYITGQAISVDGN 260 (264)
T ss_pred ------CCCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCCC
Confidence 112248999999999998886422 2344 666543
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=176.67 Aligned_cols=222 Identities=17% Similarity=0.126 Sum_probs=156.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
++++++|||||+|+||++++++|+++|++|++++|+.+.... ....+...+.++.++.+|++|.++++++++
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEK--VAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHH--HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999999999887533222 222222223468899999999998888765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+|+...... ..+.+...+++|+.++.++++++. +.+.+++|++||.+++.+....
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~~--------- 149 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSGE--------- 149 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCCCC---------
Confidence 5899999998643211 233456789999999999988874 4556799999998666554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCCccC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.+. +++++++|||.+++|...... .........+....+ .
T Consensus 150 ------------~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 213 (250)
T TIGR03206 150 ------------AVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIP----L 213 (250)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCC----c
Confidence 349999999999988887764 899999999999998532110 001111222222211 1
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
..+..++|+|+++..++..... .|+ +++.+
T Consensus 214 --~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~ 246 (250)
T TIGR03206 214 --GRLGQPDDLPGAILFFSSDDASFITGQVLSVSG 246 (250)
T ss_pred --cCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCC
Confidence 1245789999999998875432 344 44543
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=176.37 Aligned_cols=223 Identities=15% Similarity=0.085 Sum_probs=153.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-C-CCCeEEEEccCCCHhHHHHHhc------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-A-DTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~-~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+|+||||||+|+||++++++|+++|++|++++|+...... ..+.+.. . ..+++++.+|++|.+++.++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAAN--VAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF 79 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH--HHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5889999999999999999999999999999987533222 1122211 1 1368899999999988877654
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++.+ .+ .+++|++||..+.++....
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~~~-------- 151 (259)
T PRK12384 80 GRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHN-------- 151 (259)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCCCC--------
Confidence 5799999998754322 3345677889999999888887643 34 3599999997554433211
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC------
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD------ 217 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~------ 217 (323)
..|+.+|.+.+.+++.++.+ +|++++++|||.++++...... ....... .+...
T Consensus 152 -------------~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~ 214 (259)
T PRK12384 152 -------------SGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSL--LPQYAKK--LGIKPDEVEQY 214 (259)
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhh--hHHHHHh--cCCChHHHHHH
Confidence 34999999999988888754 6999999999999876532211 1111100 01000
Q ss_pred -CccCcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 218 -TYENFFMGSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 218 -~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
........+++++|++.++..++..... .|. |+++++
T Consensus 215 ~~~~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g 255 (259)
T PRK12384 215 YIDKVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGG 255 (259)
T ss_pred HHHhCcccCCCCHHHHHHHHHHHcCcccccccCceEEEcCC
Confidence 0011223478999999999998875432 344 777654
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=183.10 Aligned_cols=219 Identities=21% Similarity=0.189 Sum_probs=153.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|+ ++++|+||||+|+||++++++|+++|++|++++|++.+... ..+++++.+|++|.++++++++
T Consensus 1 m~-~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~~ 69 (270)
T PRK06179 1 MS-NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVIA 69 (270)
T ss_pred CC-CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHHH
Confidence 44 56789999999999999999999999999999997532211 2367889999999999888776
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
.+|+||||||...... ..+.+...+++|+.++.++++++ ++.+.+++|++||..++.+.+.
T Consensus 70 ~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 141 (270)
T PRK06179 70 RAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAPY-------- 141 (270)
T ss_pred hCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCCCC--------
Confidence 4699999999754322 33456788999999999999885 4566789999999865543321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchh--HHHHHHHHcCCCCCcc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNAS--MLMLLRLLQGCTDTYE 220 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~--~~~~~~~~~g~~~~~~ 220 (323)
...|+.+|...+.+++.++.+ .|+++++++||.+.++......... ................
T Consensus 142 -------------~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (270)
T PRK06179 142 -------------MALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVA 208 (270)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHH
Confidence 134999999999998887655 5999999999999988543211000 0000000000000000
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCCCCccEEE
Q 020608 221 NFFMGSVHFKDVALAHILVYENPSACGRHLC 251 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~ 251 (323)
........++|+|+.++.++..+.....|..
T Consensus 209 ~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~ 239 (270)
T PRK06179 209 KAVKKADAPEVVADTVVKAALGPWPKMRYTA 239 (270)
T ss_pred hccccCCCHHHHHHHHHHHHcCCCCCeeEec
Confidence 0011245789999999999987654434544
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=178.24 Aligned_cols=222 Identities=16% Similarity=0.159 Sum_probs=159.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|++|||||+|+||++++++|+++|++|+++.|+.... .......+...+.++.++.+|++|.+.++++++
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHED-ANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999998875322 112222222223467889999999998887765
Q ss_pred --CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+|+..... ...+.+...+++|+.++.++++++... ..+++|++||..++.+....
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~~~--------- 192 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNETL--------- 192 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCCCc---------
Confidence 579999999975321 123456788999999999999998653 23599999998666544321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.++ |++++.++||.++++....... ......+.... ...
T Consensus 193 ------------~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~--~~~~~~~~~~~------~~~ 252 (290)
T PRK06701 193 ------------IDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFD--EEKVSQFGSNT------PMQ 252 (290)
T ss_pred ------------chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccC--HHHHHHHHhcC------CcC
Confidence 239999999999999998774 8999999999999986432211 11122221111 112
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.+.+++|+|++++.++.... ..|. +++.+
T Consensus 253 ~~~~~~dva~~~~~ll~~~~~~~~G~~i~idg 284 (290)
T PRK06701 253 RPGQPEELAPAYVFLASPDSSYITGQMLHVNG 284 (290)
T ss_pred CCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence 36789999999999987643 2344 44543
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=179.25 Aligned_cols=214 Identities=19% Similarity=0.162 Sum_probs=152.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++..|+.+.....+..+.+...+.++.++.+|++|.++++++++
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999998876543222222222222223467889999999988876654
Q ss_pred -CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 -GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|++||+|+.... ..+.+++...+++|+.++.++++++... ..++||++||..++.+....
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~~~---------- 196 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHL---------- 196 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCCCc----------
Confidence 57999999986421 1244667889999999999999998643 23599999998665443321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|.+.+.+++.++.+ +|+++++++||.+++|....... .......+.... +. ..
T Consensus 197 -----------~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~-~~~~~~~~~~~~----~~--~r 258 (294)
T PRK07985 197 -----------LDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ-TQDKIPQFGQQT----PM--KR 258 (294)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCC-CHHHHHHHhccC----CC--CC
Confidence 34999999999999988876 48999999999999986421110 111112222211 11 12
Q ss_pred cccHHHHHHHHHHhhcCCC
Q 020608 226 SVHFKDVALAHILVYENPS 244 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~ 244 (323)
+..++|+|.++..++....
T Consensus 259 ~~~pedva~~~~fL~s~~~ 277 (294)
T PRK07985 259 AGQPAELAPVYVYLASQES 277 (294)
T ss_pred CCCHHHHHHHHHhhhChhc
Confidence 5679999999999987543
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=176.88 Aligned_cols=205 Identities=18% Similarity=0.133 Sum_probs=150.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|++|||||+|+||++++++|+++|++|+++.|+. . .....++.++.+|+++.++++++++
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--------~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--------L---TQEDYPFATFVLDVSDAAAVAQVCQRLLA 72 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--------h---hhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 445678999999999999999999999999999998864 1 1113468889999999998888765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
.+|+|||+|+...... ..+.+...+++|+.++..+++++. +.+.+++|++||.....+...
T Consensus 73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~-------- 144 (252)
T PRK08220 73 ETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRIG-------- 144 (252)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCC--------
Confidence 4799999999754322 344677889999999999999974 344568999999855433221
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchh---HHH----HHHHHcCC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNAS---MLM----LLRLLQGC 215 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~---~~~----~~~~~~g~ 215 (323)
...|+.+|...+.+++.++.+ +++++++++||.+++|......... ... ......+
T Consensus 145 -------------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~- 210 (252)
T PRK08220 145 -------------MAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLG- 210 (252)
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhc-
Confidence 144999999999999888876 6899999999999998642110000 000 0111111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
.....+++++|+|++++.++...
T Consensus 211 -----~~~~~~~~~~dva~~~~~l~~~~ 233 (252)
T PRK08220 211 -----IPLGKIARPQEIANAVLFLASDL 233 (252)
T ss_pred -----CCCcccCCHHHHHHHHHHHhcch
Confidence 11234789999999999998753
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-23 Score=174.82 Aligned_cols=207 Identities=17% Similarity=0.087 Sum_probs=150.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+++||||+|+||++++++|+++|++|++++|++.+.. +...++ ..++.++.+|+++.+++.++++
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~--~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGS--KVAKAL---GENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHH--HHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999988653222 112222 2367889999999988766544
Q ss_pred -CCCEEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHHhh---CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAAKA---LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... ...+.+.+.+++|+.++.++++++.. ...+++|++||..++++....
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~~~-------- 154 (255)
T PRK05717 83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEPDT-------- 154 (255)
T ss_pred CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCCCC--------
Confidence 479999999975321 13345678999999999999999853 223689999998666544321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
+.|+.+|.+.+.+++.++.++ ++++++++||.+.++........ ......... .+. .
T Consensus 155 -------------~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~~---~~~~~~~~~---~~~--~ 213 (255)
T PRK05717 155 -------------EAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRAE---PLSEADHAQ---HPA--G 213 (255)
T ss_pred -------------cchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccch---HHHHHHhhc---CCC--C
Confidence 349999999999999998875 58999999999999853321111 111111111 111 1
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
.+.+++|+|.++..++...
T Consensus 214 ~~~~~~~va~~~~~l~~~~ 232 (255)
T PRK05717 214 RVGTVEDVAAMVAWLLSRQ 232 (255)
T ss_pred CCcCHHHHHHHHHHHcCch
Confidence 2678999999999888653
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=174.62 Aligned_cols=211 Identities=22% Similarity=0.238 Sum_probs=152.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|++|||||+|+||++++++|+++|++|++++|++.+.. +....+.. ...+++.+|++|.++++++++
T Consensus 3 ~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (239)
T PRK12828 3 HSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLS--QTLPGVPA--DALRIGGIDLVDPQAARRAVDEVNR 78 (239)
T ss_pred CCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHH--HHHHHHhh--cCceEEEeecCCHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999764322 12222221 256778899999998887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+++...... ..+.+.+.+++|+.++.++++++. +.+.+++|++||.+++.+....
T Consensus 79 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------- 151 (239)
T PRK12828 79 QFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGPGM------- 151 (239)
T ss_pred HhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCCCc-------
Confidence 5799999998653221 233456678899999999988874 3457899999999655433211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+++.++.+ .+++++++|||.++++...... + ...
T Consensus 152 --------------~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~--------------~---~~~ 200 (239)
T PRK12828 152 --------------GAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADM--------------P---DAD 200 (239)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcC--------------C---chh
Confidence 34999999999888877654 4899999999999998422110 0 001
Q ss_pred CCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 223 FMGSVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
...+++++|+|+++..++.+... .|+ +++.+
T Consensus 201 ~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g 234 (239)
T PRK12828 201 FSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDG 234 (239)
T ss_pred hhcCCCHHHHHHHHHHHhCcccccccceEEEecC
Confidence 12278999999999999986532 355 44544
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=174.81 Aligned_cols=216 Identities=20% Similarity=0.209 Sum_probs=154.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GCT 79 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 79 (323)
+++++++||||+|+||+++++.|+++|++|+++.|+..+.. +..+. .+..++.+|+++.+.++++++ ++|
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~--~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~d 79 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALD--RLAGE-----TGCEPLRLDVGDDAAIRAALAAAGAFD 79 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHH-----hCCeEEEecCCCHHHHHHHHHHhCCCC
Confidence 45689999999999999999999999999999998643221 11111 135678899999998888776 489
Q ss_pred EEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC----C-cCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 80 GVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL----G-VKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 80 ~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
+|||+|+...... ..+++.+.+++|+.++.++++++.+. + .++||++||.+.+++....
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------------ 147 (245)
T PRK07060 80 GLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPDH------------ 147 (245)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCCC------------
Confidence 9999999754321 23456778889999999999987542 2 3699999998666654321
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSV 227 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 227 (323)
..|+.+|.+.|.+++.++.+ .+++++.+|||.++++......... .....+.... ....++
T Consensus 148 ---------~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~ 211 (245)
T PRK07060 148 ---------LAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDP-QKSGPMLAAI------PLGRFA 211 (245)
T ss_pred ---------cHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCH-HHHHHHHhcC------CCCCCC
Confidence 34999999999999988865 3899999999999998643211111 1111111111 123488
Q ss_pred cHHHHHHHHHHhhcCCCC--CccE-EEEc
Q 020608 228 HFKDVALAHILVYENPSA--CGRH-LCVE 253 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~~~--~~~~-~~~~ 253 (323)
+++|+|+++..++..+.. .|++ ++.+
T Consensus 212 ~~~d~a~~~~~l~~~~~~~~~G~~~~~~~ 240 (245)
T PRK07060 212 EVDDVAAPILFLLSDAASMVSGVSLPVDG 240 (245)
T ss_pred CHHHHHHHHHHHcCcccCCccCcEEeECC
Confidence 999999999999976542 3554 4443
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-23 Score=185.75 Aligned_cols=232 Identities=19% Similarity=0.171 Sum_probs=157.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHH-Hhhcc----C--CCCCeEEEEccCCCHhHHHHHhc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAH-LKALE----G--ADTRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~----~--~~~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
++++||||||+|+||++++++|+++|++|+++.|+..+...... +.++. . ...+++++.+|++|.+++.+++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 56889999999999999999999999999999997644322111 11110 0 11358899999999999999999
Q ss_pred CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhc
Q 020608 77 GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCR 156 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 156 (323)
++|+|||++|.... ...++...+++|+.++.++++++++.++++||++||.++..... .+. ....
T Consensus 159 giDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~--------p~~-~~~s---- 223 (576)
T PLN03209 159 NASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGF--------PAA-ILNL---- 223 (576)
T ss_pred CCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCc--------ccc-chhh----
Confidence 99999999986422 11245667889999999999999999999999999985421110 000 0111
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC-CCcccHHHHHHH
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF-MGSVHFKDVALA 235 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~i~v~D~a~~ 235 (323)
...|...|..+|..+. .+|+++++||||.++++....... .. +. . ...+.. ...+..+|||++
T Consensus 224 --k~~~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~d~~~~t--~~-v~---~----~~~d~~~gr~isreDVA~v 287 (576)
T PLN03209 224 --FWGVLCWKRKAEEALI----ASGLPYTIVRPGGMERPTDAYKET--HN-LT---L----SEEDTLFGGQVSNLQVAEL 287 (576)
T ss_pred --HHHHHHHHHHHHHHHH----HcCCCEEEEECCeecCCccccccc--cc-ee---e----ccccccCCCccCHHHHHHH
Confidence 1337778888887764 579999999999999885432110 00 00 0 001111 125789999999
Q ss_pred HHHhhcCCC-CCc-cEEEEcCc----cCHHHHHHHHH
Q 020608 236 HILVYENPS-ACG-RHLCVEAI----SHYGDFVAKVA 266 (323)
Q Consensus 236 ~~~~~~~~~-~~~-~~~~~~~~----~~~~e~~~~i~ 266 (323)
++.++.++. ..+ .+.+.++. .++.++...+-
T Consensus 288 VvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~ip 324 (576)
T PLN03209 288 MACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKIP 324 (576)
T ss_pred HHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhcc
Confidence 999998664 333 36554332 45566555443
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=174.50 Aligned_cols=231 Identities=22% Similarity=0.214 Sum_probs=155.0
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|+ ++|+|+||||+|+||++++++|+++|++|++++|+++... .+.. .+++++.+|++|.++++++++
T Consensus 1 m~-~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~---~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 1 MD-MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVA---ALEA-----EGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred CC-CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHH-----CCceEEEccCCCHHHHHHHHHHHHH
Confidence 54 5689999999999999999999999999999999753322 2211 257889999999988776654
Q ss_pred ----CCCEEEEcccCCccCC----CCCchhhhhhHHHHH----HHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ----GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKG----TVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~----~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||...... ..+.+...+++|+.| ++.++..+++.+.++||++||..++.+...
T Consensus 72 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~------- 144 (277)
T PRK05993 72 LSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPMKY------- 144 (277)
T ss_pred HcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCCCCc-------
Confidence 4799999998754322 233456789999999 555666666777789999999855433221
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhH------------HH--
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASM------------LM-- 207 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~------------~~-- 207 (323)
...|+.+|.+.+.+++.++.+ +|+++++++||.+.++.......... .+
T Consensus 145 --------------~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (277)
T PRK05993 145 --------------RGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFRANALAAFKRWIDIENSVHRAAYQQ 210 (277)
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchhhHHHHHHhhhhccccchhHHHHHH
Confidence 144999999999998887644 58999999999998875321100000 00
Q ss_pred -HHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHCC
Q 020608 208 -LLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYP 270 (323)
Q Consensus 208 -~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~ 270 (323)
...... . .......+.++++|+.++.++++......|.++. . ..+...+.+.+|
T Consensus 211 ~~~~~~~-~----~~~~~~~~~~~~va~~i~~a~~~~~~~~~~~~~~-~---~~~~~~~~~~~p 265 (277)
T PRK05993 211 QMARLEG-G----GSKSRFKLGPEAVYAVLLHALTAPRPRPHYRVTT-P---AKQGALLKRLLP 265 (277)
T ss_pred HHHHHHh-h----hhccccCCCHHHHHHHHHHHHcCCCCCCeeeeCc-h---hHHHHHHHHHCC
Confidence 000000 0 0000113578999999999998765433444332 1 234444555544
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=173.08 Aligned_cols=218 Identities=18% Similarity=0.145 Sum_probs=153.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
.++|++|||||+|+||++++++|+++|++|+++.|+..+ .......++...+.++.++.+|++|.+++.++++
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRD-EAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 457899999999999999999999999999888765321 1112222222224568889999999998887765
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC----CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL----GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||..... ...+.+.+.+++|+.++.++++++... +.+++|++||...+.+.+..
T Consensus 86 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~p~~--------- 156 (258)
T PRK09134 86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLNPDF--------- 156 (258)
T ss_pred CCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCCCCc---------
Confidence 479999999875331 133466788999999999999987543 23588888886433222110
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|.+.|.+.+.+++++ ++++++++||.+.++.... . ..+.....+.+ .+ .
T Consensus 157 ------------~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~~----~-~~~~~~~~~~~--~~----~ 213 (258)
T PRK09134 157 ------------LSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQS----P-EDFARQHAATP--LG----R 213 (258)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcccC----h-HHHHHHHhcCC--CC----C
Confidence 349999999999999988764 4899999999997754211 1 11222222221 11 1
Q ss_pred cccHHHHHHHHHHhhcCCCCCcc-EEEEc
Q 020608 226 SVHFKDVALAHILVYENPSACGR-HLCVE 253 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~~~~~-~~~~~ 253 (323)
..+++|+|++++.+++.+...|+ +++.+
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~g~~~~i~g 242 (258)
T PRK09134 214 GSTPEEIAAAVRYLLDAPSVTGQMIAVDG 242 (258)
T ss_pred CcCHHHHHHHHHHHhcCCCcCCCEEEECC
Confidence 46799999999999987766666 45543
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=176.55 Aligned_cols=213 Identities=20% Similarity=0.123 Sum_probs=151.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+..... +....+.. ..+++++.+|++|.++++++++
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQ--NVCDSLGG-EPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH--HHHHHhcC-CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999988643222 22222321 3468899999999999888776
Q ss_pred -CCCEEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 -GCTGVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||..... .+.+++...+++|+.++.++++++.. .+.+++|++||.++.++....
T Consensus 93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~------- 165 (280)
T PLN02253 93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLGP------- 165 (280)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCCCC-------
Confidence 689999999975321 13356788999999999999998753 234689999998665543221
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC---chhHHHHH---HHHcCCC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL---NASMLMLL---RLLQGCT 216 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~---~~~~g~~ 216 (323)
..|+.+|.+.|.+++.++.+. ++++++++||.+.++...... ......+. .......
T Consensus 166 --------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (280)
T PLN02253 166 --------------HAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNA 231 (280)
T ss_pred --------------cccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCC
Confidence 349999999999999988764 899999999999887432111 00001111 1111110
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
. .....++++|+|.+++.++...
T Consensus 232 ~----l~~~~~~~~dva~~~~~l~s~~ 254 (280)
T PLN02253 232 N----LKGVELTVDDVANAVLFLASDE 254 (280)
T ss_pred C----CcCCCCCHHHHHHHHHhhcCcc
Confidence 0 0012478999999999998754
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=176.10 Aligned_cols=200 Identities=22% Similarity=0.128 Sum_probs=148.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++++++||||||+||++++++|+++|++|++..|+++... +....+ ..++++.+|++|+++++++++
T Consensus 1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~--~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAK--ETAAEL----GLVVGGPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHh----ccceEEEccCCCHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999988643221 111222 147788999999998776554
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|++||+||...... ..+.+...+++|+.++.++++++ ++.+.++||++||.++..+.+..
T Consensus 75 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------- 147 (273)
T PRK07825 75 DLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVPGM------- 147 (273)
T ss_pred HcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCCCC-------
Confidence 5799999999754322 23456778999999999988776 34566799999998665543321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|...+.+.+.++.+ .|+++++++|+.+.++..... + ...
T Consensus 148 --------------~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~~---------------~---~~~ 195 (273)
T PRK07825 148 --------------ATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAGT---------------G---GAK 195 (273)
T ss_pred --------------cchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhccc---------------c---ccc
Confidence 34999999888877776655 489999999999876542210 0 011
Q ss_pred CCCcccHHHHHHHHHHhhcCCCC
Q 020608 223 FMGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
...+++++|+|++++.++.++..
T Consensus 196 ~~~~~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 196 GFKNVEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCC
Confidence 23468899999999999987644
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-23 Score=172.87 Aligned_cols=219 Identities=20% Similarity=0.148 Sum_probs=152.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
++++|||||+|+||++++++|+++|++|++..++.. .........+...+.++.++.+|++|.++++++++ .
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNR-DAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCH-HHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999887765432 12222222333223467889999999998887765 5
Q ss_pred CCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhhC------C-cCEEEEecccccccCCCCCCCCcccc
Q 020608 78 CTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKAL------G-VKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~------~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
+|+|||+|+...... ..+++...+++|+.++.++++++.+. + -+++|++||.+++++....
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~------- 153 (248)
T PRK06123 81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGE------- 153 (248)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCCC-------
Confidence 799999999753211 23456688999999999998887442 1 2479999998666654310
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
...|+.+|.+.+.+++.++.+. |++++++||+.++||...... ............+. .
T Consensus 154 -------------~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~--~~~~~~~~~~~~p~----~ 214 (248)
T PRK06123 154 -------------YIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG--EPGRVDRVKAGIPM----G 214 (248)
T ss_pred -------------ccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC--CHHHHHHHHhcCCC----C
Confidence 0239999999999999888764 899999999999999543211 11122222222211 1
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEE
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCV 252 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~ 252 (323)
.+.+++|++++++.++.... ..|. |++.
T Consensus 215 --~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~ 245 (248)
T PRK06123 215 --RGGTAEEVARAILWLLSDEASYTTGTFIDVS 245 (248)
T ss_pred --CCcCHHHHHHHHHHHhCccccCccCCEEeec
Confidence 13478999999999887542 2343 5554
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-23 Score=173.33 Aligned_cols=222 Identities=21% Similarity=0.219 Sum_probs=151.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+|+||||+|+||+++++.|+++|++|+++.|+++.... ....+.. ....+.++.+|++|++++.++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~--~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNE--LLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAE 79 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHH--HHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999887543322 2222211 12346677999999999888776
Q ss_pred ---CCCEEEEcccCCcc-------CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCc
Q 020608 77 ---GCTGVFHLASPCIV-------DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+|||||+.... ..+.+.+...+++|+.++..+++++ ++.+.+++|++||.++.++.. .
T Consensus 80 ~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-----~ 154 (256)
T PRK09186 80 KYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPK-----F 154 (256)
T ss_pred HcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhcccc-----c
Confidence 37999999975321 1123456778889998888777665 345667999999986655321 1
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
...++.+... ...|+.+|...+.+++.++.+ .++++++++||.++++.. . ..........
T Consensus 155 ~~~~~~~~~~------~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~----~---~~~~~~~~~~---- 217 (256)
T PRK09186 155 EIYEGTSMTS------PVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP----E---AFLNAYKKCC---- 217 (256)
T ss_pred hhccccccCC------cchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC----H---HHHHHHHhcC----
Confidence 1222222111 135999999999999888775 489999999999886531 1 1111111111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
+ ...+++++|+|++++.++.+.. ..|.++
T Consensus 218 ~--~~~~~~~~dva~~~~~l~~~~~~~~~g~~~ 248 (256)
T PRK09186 218 N--GKGMLDPDDICGTLVFLLSDQSKYITGQNI 248 (256)
T ss_pred C--ccCCCCHHHhhhhHhheeccccccccCceE
Confidence 1 1237899999999999997543 245544
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-23 Score=172.82 Aligned_cols=210 Identities=20% Similarity=0.144 Sum_probs=150.3
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+++||||+|+||++++++|+++|++|++++|+.+.. .+..+++ +.++.++.+|++|.+++.++++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~--~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASL--EAARAEL---GESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHH--HHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999998864221 1222222 2367889999999887665543
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++... ...++|++||..+.++.+..
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~~~---------- 147 (249)
T PRK06500 78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMPNS---------- 147 (249)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCCCc----------
Confidence 6799999999754322 33567789999999999999998642 23588888887666543321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC---CchhHHHHHHHHcCCCCCccCc
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT---LNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
+.|+.+|.+.|.+++.++.+. |++++++|||.+++|..... ..........+..+.+.
T Consensus 148 -----------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~----- 211 (249)
T PRK06500 148 -----------SVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPL----- 211 (249)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCC-----
Confidence 449999999999998887654 89999999999999853210 01111122222222211
Q ss_pred CCCcccHHHHHHHHHHhhcCC
Q 020608 223 FMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~ 243 (323)
..+..++|+|+++..++...
T Consensus 212 -~~~~~~~~va~~~~~l~~~~ 231 (249)
T PRK06500 212 -GRFGTPEEIAKAVLYLASDE 231 (249)
T ss_pred -CCCcCHHHHHHHHHHHcCcc
Confidence 11458999999999998754
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-23 Score=172.14 Aligned_cols=213 Identities=19% Similarity=0.149 Sum_probs=152.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++++++||||+|+||++++++|+++|++|+++.|+... ......+.+.....++.++.+|+++.++++++++
T Consensus 1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 1 MTLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAA-AADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHH-HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999888775422 1122222333334578899999999998888776
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++.+. ..+++|++||.....+.+.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~---------- 149 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPLPG---------- 149 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCCCC----------
Confidence 689999999975321 133456778999999999999987553 2359999999754433221
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
.+.|+.+|.+.+.+++.++.++ ++++++++||.+.++....... ......+....+ ..
T Consensus 150 -----------~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~--~~~~~~~~~~~~------~~ 210 (245)
T PRK12937 150 -----------YGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKS--AEQIDQLAGLAP------LE 210 (245)
T ss_pred -----------CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCC--HHHHHHHHhcCC------CC
Confidence 1449999999999998887653 8999999999998875321111 112223222221 11
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
.+.+++|+++++..++...
T Consensus 211 ~~~~~~d~a~~~~~l~~~~ 229 (245)
T PRK12937 211 RLGTPEEIAAAVAFLAGPD 229 (245)
T ss_pred CCCCHHHHHHHHHHHcCcc
Confidence 2457899999999998754
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=170.94 Aligned_cols=213 Identities=13% Similarity=0.056 Sum_probs=153.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+..... +...++...+.++.++.+|++|.++++++++
T Consensus 5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 5 FSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAE--LAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHH--HHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999988753222 2233333323467788999999998887664
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
.+|+|||+|+..... ...+.+...+++|+.++..+++++.. .+.++||++||..+..+....
T Consensus 83 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~------- 155 (254)
T PRK08085 83 DIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDTI------- 155 (254)
T ss_pred hcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCCCC-------
Confidence 479999999964321 13456778999999999999988753 345799999998554433211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+.++........ ........... +
T Consensus 156 --------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~-~~~~~~~~~~~----p-- 214 (254)
T PRK08085 156 --------------TPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVED-EAFTAWLCKRT----P-- 214 (254)
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccC-HHHHHHHHhcC----C--
Confidence 349999999999999988764 89999999999999854321110 11111111111 1
Q ss_pred CCCcccHHHHHHHHHHhhcCC
Q 020608 223 FMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~ 243 (323)
...+..++|+|.++..++...
T Consensus 215 ~~~~~~~~~va~~~~~l~~~~ 235 (254)
T PRK08085 215 AARWGDPQELIGAAVFLSSKA 235 (254)
T ss_pred CCCCcCHHHHHHHHHHHhCcc
Confidence 122668999999999998753
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=173.62 Aligned_cols=207 Identities=20% Similarity=0.140 Sum_probs=150.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
|++||||||+|+||+++++.|+++|++|++++|+..... ...+.+...+.++.++.+|++|.+.++++++ +
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLA--SLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999999998753322 2222333334578889999999998887766 5
Q ss_pred CCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhh---CCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 78 CTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKA---LGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+|+|||+|+...... ..+.+.+.+++|+.++.++++.+.. .+.+++|++||..++.+....
T Consensus 79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----------- 147 (263)
T PRK06181 79 IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVPTR----------- 147 (263)
T ss_pred CCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCCCc-----------
Confidence 799999998754332 1223567799999999999999743 234799999998666543321
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMG 225 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 225 (323)
..|+.+|...+.+++.++.+ .++++++++||.+.++....... ..+.+.. .+.+...
T Consensus 148 ----------~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~---------~~~~~~~~~~~~~~~ 208 (263)
T PRK06181 148 ----------SGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALD---------GDGKPLGKSPMQESK 208 (263)
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhcc---------ccccccccccccccC
Confidence 34999999999998877654 48999999999998875431100 0111111 1222235
Q ss_pred cccHHHHHHHHHHhhcCC
Q 020608 226 SVHFKDVALAHILVYENP 243 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~ 243 (323)
+++++|+|++++.+++..
T Consensus 209 ~~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 209 IMSAEECAEAILPAIARR 226 (263)
T ss_pred CCCHHHHHHHHHHHhhCC
Confidence 899999999999999853
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=170.17 Aligned_cols=278 Identities=18% Similarity=0.179 Sum_probs=193.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++-.+-|.|||||+|+++|.+|++.|.+|++--|..+ ....+++-+.+ ...+-++..|++|++++.++.+...+|||
T Consensus 60 sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~--~~~r~lkvmGd-LGQvl~~~fd~~DedSIr~vvk~sNVVIN 136 (391)
T KOG2865|consen 60 SGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDE--YDPRHLKVMGD-LGQVLFMKFDLRDEDSIRAVVKHSNVVIN 136 (391)
T ss_pred cceEEEEecccccccHHHHHHHhhcCCeEEEeccCCc--cchhheeeccc-ccceeeeccCCCCHHHHHHHHHhCcEEEE
Confidence 3456889999999999999999999999999988642 22233332222 34688999999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+.|. +.+...-...++|+.+..++...|++.|+.|||++|+-++- -.. ++-|-
T Consensus 137 LIGr----d~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lgan---v~s--------------------~Sr~L 189 (391)
T KOG2865|consen 137 LIGR----DYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGAN---VKS--------------------PSRML 189 (391)
T ss_pred eecc----ccccCCcccccccchHHHHHHHHHHhhChhheeehhhcccc---ccC--------------------hHHHH
Confidence 9987 23333344778999999999999999999999999998421 110 13389
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc---CCCcccHHHHHHHHHHhh
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF---FMGSVHFKDVALAHILVY 240 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~i~v~D~a~~~~~~~ 240 (323)
.+|.++|..++... ...+|+||+.+||..++.-. .+..+.+- -|.....+.+ ....||+-|||.+++.++
T Consensus 190 rsK~~gE~aVrdaf----PeAtIirPa~iyG~eDrfln--~ya~~~rk-~~~~pL~~~GekT~K~PVyV~DVaa~IvnAv 262 (391)
T KOG2865|consen 190 RSKAAGEEAVRDAF----PEATIIRPADIYGTEDRFLN--YYASFWRK-FGFLPLIGKGEKTVKQPVYVVDVAAAIVNAV 262 (391)
T ss_pred HhhhhhHHHHHhhC----CcceeechhhhcccchhHHH--HHHHHHHh-cCceeeecCCcceeeccEEEehHHHHHHHhc
Confidence 99999999997654 47899999999998654221 11112221 2222223333 233899999999999999
Q ss_pred cCCCCCcc-EEE-EcCccCHHHHHHHHHHHCCC------CCCCCC--------------CCCCC--------CCCccccc
Q 020608 241 ENPSACGR-HLC-VEAISHYGDFVAKVAELYPE------YDIPRL--------------PKDTQ--------PGLLRTKD 290 (323)
Q Consensus 241 ~~~~~~~~-~~~-~~~~~~~~e~~~~i~~~~~~------~~~~~~--------------~~~~~--------~~~~~~~~ 290 (323)
..+.+.|. |-. ++..+...|+++.+.+.+-. .++|.+ .+..+ .......+
T Consensus 263 kDp~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~~pf~~~~pln~d~ie~~~v~~~vl 342 (391)
T KOG2865|consen 263 KDPDSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPFPPPSPLNRDQIERLTVTDLVL 342 (391)
T ss_pred cCccccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheeecCCCCCCCCCHHHhhheeehhhhc
Confidence 99887666 765 67889999999887665411 122211 11100 01112344
Q ss_pred cchhH-hhhCCcccCHHHHHHHHHHHHHH
Q 020608 291 GAKKL-MDLGLQFIPMDQIIKDSVESLKA 318 (323)
Q Consensus 291 ~~~~~-~~lG~~~~~~~~~l~~~~~~~~~ 318 (323)
+.... ++||..++.+|..--+.+.-|+.
T Consensus 343 t~~~tleDLgv~~t~le~~~~e~l~~yR~ 371 (391)
T KOG2865|consen 343 TGAPTLEDLGVVLTKLELYPVEFLRQYRK 371 (391)
T ss_pred CCCCcHhhcCceeeecccccHHHHHHHhh
Confidence 45555 88898888888755555554443
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=170.75 Aligned_cols=220 Identities=18% Similarity=0.137 Sum_probs=157.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+++||||+|+||++++++|+++|++|+++.|+.+.. ......+...+.++.++.+|++|.+++.++++
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATL--EAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHH--HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999975322 12223333334468899999999998887665
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+|+...... ..+.+.+.+++|+.++.++++++.+ .+.+++|++||..+..+....
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~-------- 157 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAGD-------- 157 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCCCc--------
Confidence 4699999999753211 3345677899999999999977643 556799999998655543321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+. +++++.++||.+.++....... .......+.... + .
T Consensus 158 -------------~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~-~~~~~~~~~~~~----~--~ 217 (256)
T PRK06124 158 -------------AVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAA-DPAVGPWLAQRT----P--L 217 (256)
T ss_pred -------------cHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhcc-ChHHHHHHHhcC----C--C
Confidence 349999999999988877653 8999999999999986332111 111111121111 1 1
Q ss_pred CCcccHHHHHHHHHHhhcCCCC--CccEEE
Q 020608 224 MGSVHFKDVALAHILVYENPSA--CGRHLC 251 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~--~~~~~~ 251 (323)
..+++++|++.+++.++..... .|+++.
T Consensus 218 ~~~~~~~~~a~~~~~l~~~~~~~~~G~~i~ 247 (256)
T PRK06124 218 GRWGRPEEIAGAAVFLASPAASYVNGHVLA 247 (256)
T ss_pred CCCCCHHHHHHHHHHHcCcccCCcCCCEEE
Confidence 2378999999999999986543 466553
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=169.95 Aligned_cols=207 Identities=23% Similarity=0.198 Sum_probs=146.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~ 80 (323)
+||++|||||+|+||++++++|+++ ++|++++|+..+.. .+.+. ..+++++.+|++|.++++++++ ++|+
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~---~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 74 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLD---ELAAE---LPGATPFPVDLTDPEAIAAAVEQLGRLDV 74 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHH---HHHHH---hccceEEecCCCCHHHHHHHHHhcCCCCE
Confidence 4689999999999999999999999 99999999753221 11111 1257889999999999998887 5899
Q ss_pred EEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHH----HhhCCcCEEEEecccccccCCCCCCCCccccCCCCCCh
Q 020608 81 VFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTA----AKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDE 152 (323)
Q Consensus 81 Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~ 152 (323)
|||+++...... ..+.+...+++|+.+..++.+. +++. .+++|++||..++.+....
T Consensus 75 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~~~~-------------- 139 (227)
T PRK08219 75 LVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRANPGW-------------- 139 (227)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCcCCCC--------------
Confidence 999998754321 2234566788999986555554 3444 4699999998665433211
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhC-C-ccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHH
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKEK-G-LDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFK 230 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~-~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~ 230 (323)
..|+.+|...+.+++.++.+. + ++++.++||.+.+|.... .... .+.. . ....+++++
T Consensus 140 -------~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~-------~~~~--~~~~--~--~~~~~~~~~ 199 (227)
T PRK08219 140 -------GSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQRG-------LVAQ--EGGE--Y--DPERYLRPE 199 (227)
T ss_pred -------chHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhhh-------hhhh--hccc--c--CCCCCCCHH
Confidence 349999999999988876553 5 899999998877653211 0000 1111 1 113479999
Q ss_pred HHHHHHHHhhcCCCCCccEEEE
Q 020608 231 DVALAHILVYENPSACGRHLCV 252 (323)
Q Consensus 231 D~a~~~~~~~~~~~~~~~~~~~ 252 (323)
|+|++++.+++++..+..+++.
T Consensus 200 dva~~~~~~l~~~~~~~~~~~~ 221 (227)
T PRK08219 200 TVAKAVRFAVDAPPDAHITEVV 221 (227)
T ss_pred HHHHHHHHHHcCCCCCccceEE
Confidence 9999999999887655557654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-23 Score=173.68 Aligned_cols=196 Identities=20% Similarity=0.142 Sum_probs=146.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|+|+||||+|+||++++++|+++|++|++++|+.... .+..+.+.... ++.++.+|++|.+++.++++ .
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~--~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDAL--QAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 48999999999999999999999999999999874322 12222332222 68899999999998877665 3
Q ss_pred CCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHH----HhhCCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 78 CTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTA----AKALGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
+|+|||+||...... ..+.+...+++|+.++.+++++ +++.+.++||++||.+++++.+..
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~~~~---------- 148 (257)
T PRK07024 79 PDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLPGA---------- 148 (257)
T ss_pred CCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCC----------
Confidence 799999999753221 2245678899999999998874 345566799999998766554321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|.+.+.+++.++.+ +|++++++|||.+.+|...... ... ..
T Consensus 149 -----------~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~-----------~~~--------~~ 198 (257)
T PRK07024 149 -----------GAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHNP-----------YPM--------PF 198 (257)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcCC-----------CCC--------CC
Confidence 34999999999999887644 5899999999999987532100 000 01
Q ss_pred cccHHHHHHHHHHhhcCC
Q 020608 226 SVHFKDVALAHILVYENP 243 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~ 243 (323)
++.++|+|+.++.++.+.
T Consensus 199 ~~~~~~~a~~~~~~l~~~ 216 (257)
T PRK07024 199 LMDADRFAARAARAIARG 216 (257)
T ss_pred ccCHHHHHHHHHHHHhCC
Confidence 357999999999999864
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=171.80 Aligned_cols=212 Identities=16% Similarity=0.087 Sum_probs=151.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|++|||||+|+||++++++|+++|++|+++.|+....+ ....++...+.++.++.+|++|.++++++++
T Consensus 5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALE--KLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH--HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999988753322 2223333333467889999999998877664
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+||||||...... ..+.+.+.+++|+.++..+++++.. .+ .+++|++||.++.......
T Consensus 83 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~------ 156 (253)
T PRK05867 83 ELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQ------ 156 (253)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCCCC------
Confidence 6899999999754322 3445677889999999999998743 22 2579999987543211100
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
....|+.+|.+.+.+++.++.++ |++++.++||.+-+|...... .......... +.
T Consensus 157 -------------~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~~----~~~~~~~~~~----~~ 215 (253)
T PRK05867 157 -------------QVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYT----EYQPLWEPKI----PL 215 (253)
T ss_pred -------------CccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccch----HHHHHHHhcC----CC
Confidence 01349999999999999988764 899999999999888543211 1111111111 11
Q ss_pred cCCCcccHHHHHHHHHHhhcCC
Q 020608 222 FFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
..+..++|+|.+++.++...
T Consensus 216 --~r~~~p~~va~~~~~L~s~~ 235 (253)
T PRK05867 216 --GRLGRPEELAGLYLYLASEA 235 (253)
T ss_pred --CCCcCHHHHHHHHHHHcCcc
Confidence 12568999999999998753
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=172.08 Aligned_cols=215 Identities=18% Similarity=0.157 Sum_probs=155.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|+++.|+.... .....+. ..++.++.+|+++.++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~---~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA---EVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999875321 2222221 2356789999999998877665
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++.. .+.++||++||..+.++....
T Consensus 87 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-------- 158 (255)
T PRK06841 87 FGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALERH-------- 158 (255)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCCCC--------
Confidence 5799999999754322 2345667899999999999999753 346799999998666544321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+ .|++++.++||.+.++........ ........+. + .
T Consensus 159 -------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~----~--~ 217 (255)
T PRK06841 159 -------------VAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAG--EKGERAKKLI----P--A 217 (255)
T ss_pred -------------chHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccch--hHHHHHHhcC----C--C
Confidence 34999999999999888776 489999999999988753321110 1111121221 1 1
Q ss_pred CCcccHHHHHHHHHHhhcCCCC--CccEE
Q 020608 224 MGSVHFKDVALAHILVYENPSA--CGRHL 250 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~--~~~~~ 250 (323)
..+.+++|+|++++.++..... .|+.+
T Consensus 218 ~~~~~~~~va~~~~~l~~~~~~~~~G~~i 246 (255)
T PRK06841 218 GRFAYPEEIAAAALFLASDAAAMITGENL 246 (255)
T ss_pred CCCcCHHHHHHHHHHHcCccccCccCCEE
Confidence 2367999999999999976432 45544
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=169.54 Aligned_cols=218 Identities=17% Similarity=0.150 Sum_probs=155.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEE-ecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHAT-VKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|.+++|++|||||||+||+++++.|+++|++|+++ .|+..... .....+...+.++.++.+|++|++++.++++
T Consensus 1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQ--ELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIV 78 (247)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHH--HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 67888999999999999999999999999999988 77643221 2222222223468899999999998887765
Q ss_pred ----CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ----GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||++|...... ..+.+...+++|+.++.++++.+.. .+.+++|++||.+.+++....
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~------ 152 (247)
T PRK05565 79 EKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASCE------ 152 (247)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCCCc------
Confidence 6899999999763221 3345677899999999888888743 445789999998776654321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.+ .|++++++|||.+.++........ ........ .+
T Consensus 153 ---------------~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~---~~~~~~~~----~~- 209 (247)
T PRK05565 153 ---------------VLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEE---DKEGLAEE----IP- 209 (247)
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChH---HHHHHHhc----CC-
Confidence 23999999988887777665 489999999999987754322111 11111111 11
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
...+..++|++.+++.++.... ..|++.
T Consensus 210 -~~~~~~~~~va~~~~~l~~~~~~~~~g~~~ 239 (247)
T PRK05565 210 -LGRLGKPEEIAKVVLFLASDDASYITGQII 239 (247)
T ss_pred -CCCCCCHHHHHHHHHHHcCCccCCccCcEE
Confidence 1225689999999999987543 245543
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=171.39 Aligned_cols=215 Identities=17% Similarity=0.143 Sum_probs=153.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+.. .....+.+...+.++.++.+|++|.++++++++
T Consensus 4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDG-LAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999875321 122223333334467889999999998887665
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||...... ..+.+.+.+++|+.++..+++++. +.+.+++|++||.++..+.....
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~------ 156 (254)
T PRK06114 83 ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRGLL------ 156 (254)
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCC------
Confidence 4799999999754321 345678889999999988887753 34456999999986655432100
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
...|+.+|.+.+.+++.++.+ .|+++++++||.+.++....... ......+.... +.+
T Consensus 157 -------------~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~--~~~~~~~~~~~----p~~ 217 (254)
T PRK06114 157 -------------QAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEM--VHQTKLFEEQT----PMQ 217 (254)
T ss_pred -------------cchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccc--hHHHHHHHhcC----CCC
Confidence 134999999999999888765 48999999999999986432111 11111111111 111
Q ss_pred CCCcccHHHHHHHHHHhhcCC
Q 020608 223 FMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~ 243 (323)
.+..++|+|.+++.++.+.
T Consensus 218 --r~~~~~dva~~~~~l~s~~ 236 (254)
T PRK06114 218 --RMAKVDEMVGPAVFLLSDA 236 (254)
T ss_pred --CCcCHHHHHHHHHHHcCcc
Confidence 2457899999999998753
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=170.24 Aligned_cols=210 Identities=23% Similarity=0.199 Sum_probs=152.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+++||||+|+||++++++|+++|++|+++.|+++... ...+.+.....++.++.+|++|.++++++++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAR--ELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999999999999988653322 2222232223468899999999998887764
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+|+...... ..+.+...+++|+.++.++++++.. .+.+++|++||...+.+....
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 153 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAPKL--------- 153 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCCCc---------
Confidence 6899999999754321 3345667788999999999998743 234599999998665543321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+ .+++++.++||.+.++....... .........+. ...
T Consensus 154 ------------~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~------~~~ 213 (250)
T PRK12939 154 ------------GAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA--DERHAYYLKGR------ALE 213 (250)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC--hHHHHHHHhcC------CCC
Confidence 34999999999999888765 48999999999998886432111 01122222221 123
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
.+++++|+|++++.++...
T Consensus 214 ~~~~~~dva~~~~~l~~~~ 232 (250)
T PRK12939 214 RLQVPDDVAGAVLFLLSDA 232 (250)
T ss_pred CCCCHHHHHHHHHHHhCcc
Confidence 3789999999999999754
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=170.23 Aligned_cols=213 Identities=17% Similarity=0.124 Sum_probs=151.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+++||||+|+||.+++++|+++|++|++++|++++.. +..+++...+.++.++.+|++++++++++++
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELD--QLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999998754322 2223333334468889999999998887765
Q ss_pred ---CCCEEEEcccCCcc--C---CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEeccccccc-CCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIV--D---KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSIT-PSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~-~~~~~~~~~~ 143 (323)
++|+|||+||.... + .+.+.+...+++|+.++..+++++ ++.+.+++|++||..++. +....
T Consensus 80 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~~~~~----- 154 (254)
T PRK07478 80 RFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAGFPGM----- 154 (254)
T ss_pred hcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccCCCCc-----
Confidence 68999999997432 1 133457888999999888776654 445567899999985442 22111
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.||.+.+.+++.++.+. |+++++++||.+-++....... .... ........ +
T Consensus 155 ----------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~-~~~~~~~~---~ 213 (254)
T PRK07478 155 ----------------AAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGD-TPEA-LAFVAGLH---A 213 (254)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccC-CHHH-HHHHHhcC---C
Confidence 349999999999999988764 7999999999998874322111 1111 11111110 1
Q ss_pred CcCCCcccHHHHHHHHHHhhcCC
Q 020608 221 NFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
...+..++|+|++++.++...
T Consensus 214 --~~~~~~~~~va~~~~~l~s~~ 234 (254)
T PRK07478 214 --LKRMAQPEEIAQAALFLASDA 234 (254)
T ss_pred --CCCCcCHHHHHHHHHHHcCch
Confidence 112567999999999998754
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=173.06 Aligned_cols=211 Identities=17% Similarity=0.144 Sum_probs=150.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+||||||+|+||.+++++|++.|++|+++.|+. +.... .+.+...+.++.++.+|+++.++++++++
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDET--RRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HHHHH--HHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999998872 22221 11222223468899999999998887766
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.+|++||+|+..... ...+.+...+++|+.++..+++++. +.+.+++|++||..++.+....
T Consensus 89 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 160 (258)
T PRK06935 89 FGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKFV-------- 160 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCCCc--------
Confidence 579999999975321 1334667889999999888887764 3445799999998665443221
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++++. |+++++++||.+.++......... .......... +.
T Consensus 161 -------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~-~~~~~~~~~~----~~-- 220 (258)
T PRK06935 161 -------------PAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADK-NRNDEILKRI----PA-- 220 (258)
T ss_pred -------------hhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccCh-HHHHHHHhcC----CC--
Confidence 249999999999999988764 899999999999887532211100 1111111111 11
Q ss_pred CCcccHHHHHHHHHHhhcCC
Q 020608 224 MGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~ 243 (323)
..+..++|+|.++..++...
T Consensus 221 ~~~~~~~dva~~~~~l~s~~ 240 (258)
T PRK06935 221 GRWGEPDDLMGAAVFLASRA 240 (258)
T ss_pred CCCCCHHHHHHHHHHHcChh
Confidence 22678899999999988753
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=169.12 Aligned_cols=214 Identities=18% Similarity=0.192 Sum_probs=153.0
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+++||||+|+||.+++++|+++|++|++++|+..+. ....+++......+.++.+|+++.++++++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGC--QAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999864322 22233333223467889999999988877655
Q ss_pred ---CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
.+|+|||+|+.... ....+.+...+++|+.++..+++++ ++.+.++++++||..+..+....
T Consensus 82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------ 155 (252)
T PRK07035 82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPGDFQ------ 155 (252)
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCCCCC------
Confidence 57999999985321 1233456678999999999888776 34456799999998555433211
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.++ |++++.+.||.+.++......... .......... +
T Consensus 156 ---------------~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~-~~~~~~~~~~----~- 214 (252)
T PRK07035 156 ---------------GIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKND-AILKQALAHI----P- 214 (252)
T ss_pred ---------------cchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCH-HHHHHHHccC----C-
Confidence 349999999999999988764 899999999999887533221111 1222222211 1
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC
Q 020608 222 FFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
...+..++|+|+++..++.+..
T Consensus 215 -~~~~~~~~~va~~~~~l~~~~~ 236 (252)
T PRK07035 215 -LRRHAEPSEMAGAVLYLASDAS 236 (252)
T ss_pred -CCCcCCHHHHHHHHHHHhCccc
Confidence 1125679999999999987643
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=170.29 Aligned_cols=212 Identities=20% Similarity=0.139 Sum_probs=153.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+... . ....++.++.+|+++.++++++++
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-------~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-------T---VDGRPAEFHAADVRDPDQVAALVDAIVE 71 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-------h---hcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999987532 0 112367889999999998887765
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh-----CCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA-----LGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++.. .+.+++|++||..+..+....
T Consensus 72 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~------ 145 (252)
T PRK07856 72 RHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPGT------ 145 (252)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCCCC------
Confidence 469999999865321 13345678899999999999998753 234699999998665543321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+++.++.++ .++++.++||.+.++....... ............ +.
T Consensus 146 ---------------~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~----~~- 204 (252)
T PRK07856 146 ---------------AAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYG-DAEGIAAVAATV----PL- 204 (252)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhcc-CHHHHHHHhhcC----CC-
Confidence 349999999999999998764 3899999999998875321110 011111211111 11
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
..+..++|+|.+++.++.... ..|+.+
T Consensus 205 -~~~~~p~~va~~~~~L~~~~~~~i~G~~i 233 (252)
T PRK07856 205 -GRLATPADIAWACLFLASDLASYVSGANL 233 (252)
T ss_pred -CCCcCHHHHHHHHHHHcCcccCCccCCEE
Confidence 125689999999999987532 345544
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=167.49 Aligned_cols=207 Identities=18% Similarity=0.199 Sum_probs=156.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++++++|||||++||.+++++|+++|++|+++.|+.++.. +..+++.+ .+..++++.+|++++++++.+.+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~--~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLE--ALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHH--HHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999754332 33333433 23567899999999999887764
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.+|++|||||...... +.+...+++++|+.+...+..+. .+.+.+++|+++|.+++.+.+..
T Consensus 82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~-------- 153 (265)
T COG0300 82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYM-------- 153 (265)
T ss_pred CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcch--------
Confidence 5899999999876542 45566789999999999888886 44556799999999776655321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.||...-.+.+.+..+ .|+.+..+.||.+..+... . .+.........
T Consensus 154 -------------avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~-~------------~~~~~~~~~~~ 207 (265)
T COG0300 154 -------------AVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFD-A------------KGSDVYLLSPG 207 (265)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccccc-c------------cccccccccch
Confidence 44999999888877777666 4899999999999987643 1 11100001112
Q ss_pred CCcccHHHHHHHHHHhhcCCCC
Q 020608 224 MGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
..++.++|+|+..+..+.+.+.
T Consensus 208 ~~~~~~~~va~~~~~~l~~~k~ 229 (265)
T COG0300 208 ELVLSPEDVAEAALKALEKGKR 229 (265)
T ss_pred hhccCHHHHHHHHHHHHhcCCc
Confidence 3367899999999999987543
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=171.18 Aligned_cols=223 Identities=17% Similarity=0.140 Sum_probs=152.7
Q ss_pred CC-CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MS-KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~-~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|. +++|++|||||+|+||++++++|+++|++|+++.|+ +.. .+....+...+.++.++.+|+++.++++++++
T Consensus 1 m~~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (272)
T PRK08589 1 MKRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAV--SETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIK 77 (272)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHH--HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 44 568999999999999999999999999999999987 222 22233333223468899999999988877665
Q ss_pred ----CCCEEEEcccCCccC-C----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ----GCTGVFHLASPCIVD-K----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|++||+||..... . ..+.+...+++|+.++..+++++. +.+ +++|++||.+++.+....
T Consensus 78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~----- 151 (272)
T PRK08589 78 EQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAADLYR----- 151 (272)
T ss_pred HHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCCCCC-----
Confidence 579999999975321 1 234567788999999988888763 334 699999998655443221
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhH-HHHHHHHcCCCCCc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASM-LMLLRLLQGCTDTY 219 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~-~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.++ |++++.+.||.+.++.......... .....+........
T Consensus 152 ----------------~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (272)
T PRK08589 152 ----------------SGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWMT 215 (272)
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhccC
Confidence 349999999999999988764 7999999999998875321110000 00000100000001
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
+. ..+..++|+|++++.++.... ..|+..
T Consensus 216 ~~--~~~~~~~~va~~~~~l~s~~~~~~~G~~i 246 (272)
T PRK08589 216 PL--GRLGKPEEVAKLVVFLASDDSSFITGETI 246 (272)
T ss_pred CC--CCCcCHHHHHHHHHHHcCchhcCcCCCEE
Confidence 11 125689999999999987533 245543
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=170.89 Aligned_cols=218 Identities=20% Similarity=0.193 Sum_probs=150.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|++|||||+|+||++++++|+++|++|++++|+.+.... ....+.....++.++.+|+++++.+.++++ +
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQA--AADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH--HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999987533222 222222223467889999999998877665 5
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccccCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
+|+||||||...... ..+.+...+++|+.++..+++.+.. .+ ..++|++||..+.++....
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~---------- 149 (256)
T PRK08643 80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPEL---------- 149 (256)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCCC----------
Confidence 799999998643211 2345677899999999888877643 22 3589999998666554321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc-------hhHHHHHHHHcCCCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN-------ASMLMLLRLLQGCTDT 218 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~-------~~~~~~~~~~~g~~~~ 218 (323)
..|+.+|.+.+.+++.++.+ .|++++.++||.+.+|....... ....+........
T Consensus 150 -----------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 215 (256)
T PRK08643 150 -----------AVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKD--- 215 (256)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhcc---
Confidence 34999999999988888765 48999999999999875321000 0000000000110
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+. ..+..++|+|.++..++.... ..|+.+
T Consensus 216 ~~~--~~~~~~~~va~~~~~L~~~~~~~~~G~~i 247 (256)
T PRK08643 216 ITL--GRLSEPEDVANCVSFLAGPDSDYITGQTI 247 (256)
T ss_pred CCC--CCCcCHHHHHHHHHHHhCccccCccCcEE
Confidence 011 125689999999999987543 345544
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=173.54 Aligned_cols=212 Identities=17% Similarity=0.138 Sum_probs=150.3
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+++||||+|+||++++++|+++|++|++++|+.+.. ....+.+...+.++.++.+|++|.+++.++++
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKA--EAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999874322 22223333223468889999999988877654
Q ss_pred --CCCEEEEcccCCccC-------------------CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEeccccc
Q 020608 77 --GCTGVFHLASPCIVD-------------------KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISS 131 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~-------------------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~ 131 (323)
++|+|||+|+..... ...+.+...+++|+.++..+++++ ++.+.+++|++||..+
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~ 164 (278)
T PRK08277 85 FGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNA 164 (278)
T ss_pred cCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchh
Confidence 689999999964321 123456788999999998777664 3344579999999966
Q ss_pred ccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC----chh
Q 020608 132 ITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL----NAS 204 (323)
Q Consensus 132 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~----~~~ 204 (323)
+.+.... ..|+.+|.+.+.+++.++.++ |+++++++||.+.+|...... ...
T Consensus 165 ~~~~~~~---------------------~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~ 223 (278)
T PRK08277 165 FTPLTKV---------------------PAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSL 223 (278)
T ss_pred cCCCCCC---------------------chhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccc
Confidence 5543221 349999999999999988775 899999999999998532110 000
Q ss_pred HHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 205 MLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 205 ~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
........... +. ..+..++|+|.+++.++..
T Consensus 224 ~~~~~~~~~~~----p~--~r~~~~~dva~~~~~l~s~ 255 (278)
T PRK08277 224 TERANKILAHT----PM--GRFGKPEELLGTLLWLADE 255 (278)
T ss_pred hhHHHHHhccC----Cc--cCCCCHHHHHHHHHHHcCc
Confidence 01111111111 11 1256799999999998876
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=168.94 Aligned_cols=202 Identities=15% Similarity=0.118 Sum_probs=150.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++++++||||+|+||++++++|+++|++|++++|+..+.. +....+...+.++.++.+|+++++++.++++
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLK--AVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999999998753222 2222222223478889999999999888776
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+|+...... ..+++.+.+++|+.++.++++++. +.+.+++|++||...+++....
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~--------- 153 (239)
T PRK07666 83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAAVT--------- 153 (239)
T ss_pred CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCCCC---------
Confidence 6899999998754321 234557789999999999998875 3456799999998666554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+ .|++++++|||.+.++..... ....+. + .
T Consensus 154 ------------~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~---------~~~~~~----~---~ 205 (239)
T PRK07666 154 ------------SAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL---------GLTDGN----P---D 205 (239)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc---------cccccC----C---C
Confidence 34999999999888877654 489999999999988753211 000111 1 2
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
.++.++|+|+.++.++..+
T Consensus 206 ~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 206 KVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 3578999999999999865
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=169.92 Aligned_cols=220 Identities=19% Similarity=0.148 Sum_probs=154.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.++.+ ...+.+...+.++.++.+|++|+++++++++
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE--EAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH--HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999999999988643222 2222222223467889999999998866554
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC-----CcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL-----GVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.+|+|||+|+..... ...+.+.+.+++|+.++.++++++... +.++||++||...+++.....
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~~------- 160 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPEV------- 160 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCccc-------
Confidence 579999999864321 133456678899999999999987543 567999999986665543210
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
.....|+.+|.+.+.+++.+++++ |+++++++|+.+-++..... ...+...+..+.+.
T Consensus 161 ----------~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~---~~~~~~~~~~~~~~------ 221 (259)
T PRK08213 161 ----------MDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGT---LERLGEDLLAHTPL------ 221 (259)
T ss_pred ----------cCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhh---hHHHHHHHHhcCCC------
Confidence 011459999999999999988764 79999999999987753321 11222233222221
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
..+..++|++.++..++.... ..|..+
T Consensus 222 ~~~~~~~~va~~~~~l~~~~~~~~~G~~~ 250 (259)
T PRK08213 222 GRLGDDEDLKGAALLLASDASKHITGQIL 250 (259)
T ss_pred CCCcCHHHHHHHHHHHhCccccCccCCEE
Confidence 114468999999988886542 245543
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=169.97 Aligned_cols=220 Identities=19% Similarity=0.138 Sum_probs=155.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+++||||+|+||++++++|+++|++|+++.|+.++.. ...+.+...+.++.++.+|++|.+++.++++
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGE--ETVALIREAGGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH--HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999754322 2222333334568899999999998887665
Q ss_pred --CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 --GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
.+|+|||+|+..... ...+++...+++|+.++..+++++ .+.+.+++|++||..++.+....
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~------- 154 (253)
T PRK06172 82 YGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPKM------- 154 (253)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCC-------
Confidence 469999999974321 134567788999999998877764 33445799999998666544321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+++.++.++ |+++++++||.+-++...............+.... +.
T Consensus 155 --------------~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~----~~- 215 (253)
T PRK06172 155 --------------SIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMH----PV- 215 (253)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccC----CC-
Confidence 349999999999999988775 79999999999988754321110111111111111 11
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
..+..++|++..+.+++.... ..|+++
T Consensus 216 -~~~~~p~~ia~~~~~l~~~~~~~~~G~~i 244 (253)
T PRK06172 216 -GRIGKVEEVASAVLYLCSDGASFTTGHAL 244 (253)
T ss_pred -CCccCHHHHHHHHHHHhCccccCcCCcEE
Confidence 125679999999999987543 355544
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=168.38 Aligned_cols=204 Identities=16% Similarity=0.130 Sum_probs=149.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH-hHHHHHhcCCC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY-DAIAAAVTGCT 79 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~d 79 (323)
|.+++|+++||||+|+||++++++|+++|++|+++.|+.... . ..++.++.+|+++. +.+.+.+.++|
T Consensus 1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------~---~~~~~~~~~D~~~~~~~~~~~~~~id 69 (235)
T PRK06550 1 QEFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD--------L---SGNFHFLQLDLSDDLEPLFDWVPSVD 69 (235)
T ss_pred CCCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc--------c---CCcEEEEECChHHHHHHHHHhhCCCC
Confidence 778889999999999999999999999999999998875321 0 23578899999987 44444456789
Q ss_pred EEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 80 GVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 80 ~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
+|||+|+.... ....+++.+.+++|+.++.++++++.. .+.+++|++||..+..+....
T Consensus 70 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------------ 137 (235)
T PRK06550 70 ILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGGG------------ 137 (235)
T ss_pred EEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCC------------
Confidence 99999985421 123456778899999999999998743 344689999998665543321
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSV 227 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 227 (323)
..|+.+|...+.+++.++.++ |+++++++||.+.++....... ............ + ...+.
T Consensus 138 ---------~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~----~--~~~~~ 201 (235)
T PRK06550 138 ---------AAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE-PGGLADWVARET----P--IKRWA 201 (235)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC-chHHHHHHhccC----C--cCCCC
Confidence 349999999999888887764 8999999999999886432211 111112222221 1 12256
Q ss_pred cHHHHHHHHHHhhcCC
Q 020608 228 HFKDVALAHILVYENP 243 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~ 243 (323)
.++|+|++++.++...
T Consensus 202 ~~~~~a~~~~~l~s~~ 217 (235)
T PRK06550 202 EPEEVAELTLFLASGK 217 (235)
T ss_pred CHHHHHHHHHHHcChh
Confidence 8999999999998653
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=170.80 Aligned_cols=211 Identities=15% Similarity=0.107 Sum_probs=151.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|+++.|+.. ....+.. ...+.++.++.+|++|.++++++++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~-~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA-PETQAQV---EALGRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH-HHHHHHH---HHcCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999887532 1111222 2223468889999999999887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|++||+||...... ..+.+...+++|+.++..+++++.. .+ .+++|++||..++.+....
T Consensus 80 ~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~------ 153 (251)
T PRK12481 80 VMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRV------ 153 (251)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCCC------
Confidence 5799999999753321 3456788999999999998888643 22 3699999998665543321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.+ +|++++.++||.+-.+...... ............ .+.
T Consensus 154 ---------------~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~----~p~ 213 (251)
T PRK12481 154 ---------------PSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALR-ADTARNEAILER----IPA 213 (251)
T ss_pred ---------------cchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcc-cChHHHHHHHhc----CCC
Confidence 23999999999999888875 4899999999999887532110 001111111111 111
Q ss_pred cCCCcccHHHHHHHHHHhhcCC
Q 020608 222 FFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+ .+..++|+|.++..++...
T Consensus 214 ~--~~~~peeva~~~~~L~s~~ 233 (251)
T PRK12481 214 S--RWGTPDDLAGPAIFLSSSA 233 (251)
T ss_pred C--CCcCHHHHHHHHHHHhCcc
Confidence 1 2568999999999998743
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=171.61 Aligned_cols=219 Identities=16% Similarity=0.120 Sum_probs=154.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+++||||+|+||++++++|+++|++|++++|+.+... +...++.. .+.++.++.+|++|.+++.++++
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAE--RAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998753322 22223322 23468889999999998887765
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||..... ...+.+...+++|+.++..+++++. +.+.+++|++||..+..+....
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------- 155 (260)
T PRK07063 83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIPGC------- 155 (260)
T ss_pred HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCCCc-------
Confidence 689999999965322 1345678889999999999999874 3345699999998555433221
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCc---hhHHHHHHHHcCCCCCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLN---ASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~---~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.++ |++++.++||.+-+|....... .............
T Consensus 156 --------------~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---- 217 (260)
T PRK07063 156 --------------FPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQ---- 217 (260)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcC----
Confidence 349999999999999988764 7999999999998775321100 0000111111111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
+.+ .+..++|+|.+++.++.... ..|+..
T Consensus 218 ~~~--r~~~~~~va~~~~fl~s~~~~~itG~~i 248 (260)
T PRK07063 218 PMK--RIGRPEEVAMTAVFLASDEAPFINATCI 248 (260)
T ss_pred CCC--CCCCHHHHHHHHHHHcCccccccCCcEE
Confidence 111 25679999999999987543 245543
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-22 Score=169.24 Aligned_cols=212 Identities=21% Similarity=0.162 Sum_probs=151.6
Q ss_pred CC-CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MS-KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~-~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|. +++|+++||||+|+||++++++|+++|++|++++|+..... +..+.+ ..++.++.+|++|.++++++++
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGA--AVAASL---GERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHh---CCeeEEEEecCCCHHHHHHHHHHHH
Confidence 54 67899999999999999999999999999999999753222 122222 2368889999999998877665
Q ss_pred ----CCCEEEEcccCCcc---CCCCCchhhhhhHHHHHHHHHHHHHhh---CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 ----GCTGVFHLASPCIV---DKVEDPQNQLLNPAVKGTVNVLTAAKA---LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.+|+|||+||.... ....+.+.+.+++|+.++..+++++.. .+.+++|++||.++..+....
T Consensus 76 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~-------- 147 (261)
T PRK08265 76 ARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQTGR-------- 147 (261)
T ss_pred HHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCC--------
Confidence 57999999986432 224456778899999999999998643 234699999998766554321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|...+.+++.++.+. |+++++++||.+.++................... ..+.+
T Consensus 148 -------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~---~~p~~- 210 (261)
T PRK08265 148 -------------WLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP---FHLLG- 210 (261)
T ss_pred -------------chhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc---cCCCC-
Confidence 349999999999999888664 8999999999998875321100000011111110 01111
Q ss_pred CCcccHHHHHHHHHHhhcCC
Q 020608 224 MGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~ 243 (323)
.+..++|+|+++..++...
T Consensus 211 -r~~~p~dva~~~~~l~s~~ 229 (261)
T PRK08265 211 -RVGDPEEVAQVVAFLCSDA 229 (261)
T ss_pred -CccCHHHHHHHHHHHcCcc
Confidence 2567999999999999754
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=168.85 Aligned_cols=216 Identities=19% Similarity=0.149 Sum_probs=151.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
++|+|+||||+|+||++++++|+++|++|+++.|+... ......+.+...+.++.++.+|++|.++++++++
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEE-GAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChH-HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999999999888765322 2222223333334578899999999988777665
Q ss_pred CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC----C-cCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL----G-VKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
.+|+|||+||..... ...+.+...+++|+.++.++++++... + .+++|++||.....+....
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~--------- 150 (256)
T PRK12743 80 RIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPGA--------- 150 (256)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCCCc---------
Confidence 579999999975432 133567788999999999999987542 1 3589999998544333211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+. +++++.++||.+++|....... ........+. +..
T Consensus 151 ------------~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~~---~~~~~~~~~~----~~~-- 209 (256)
T PRK12743 151 ------------SAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDDS---DVKPDSRPGI----PLG-- 209 (256)
T ss_pred ------------chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccCh---HHHHHHHhcC----CCC--
Confidence 349999999999988887653 7999999999999986432111 1111111111 111
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+.+++|++.++..++.... ..|.++
T Consensus 210 ~~~~~~dva~~~~~l~~~~~~~~~G~~~ 237 (256)
T PRK12743 210 RPGDTHEIASLVAWLCSEGASYTTGQSL 237 (256)
T ss_pred CCCCHHHHHHHHHHHhCccccCcCCcEE
Confidence 14589999999998887543 245544
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-22 Score=168.35 Aligned_cols=211 Identities=17% Similarity=0.161 Sum_probs=146.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
++|+++||||+|+||++++++|++.|++|++..++.. ....+...++...+.++..+.+|+++.++++.+++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK-EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999988754321 22222223333334467788999999876654332
Q ss_pred ------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||...... ..+.+..++++|+.++..+++++... ..++||++||..+..+.+..
T Consensus 82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~------ 155 (252)
T PRK12747 82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDF------ 155 (252)
T ss_pred hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCCCc------
Confidence 5899999999643221 23346788899999999999987543 23599999999655433211
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.||.+.+.+++.++.++ |++++++.||.+.+|........ . ......... .+
T Consensus 156 ---------------~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~-~-~~~~~~~~~---~~- 214 (252)
T PRK12747 156 ---------------IAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSD-P-MMKQYATTI---SA- 214 (252)
T ss_pred ---------------hhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccC-H-HHHHHHHhc---Cc-
Confidence 349999999999999887764 89999999999999854321110 0 111111111 01
Q ss_pred cCCCcccHHHHHHHHHHhhcCC
Q 020608 222 FFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
...+.+++|+|.++..++...
T Consensus 215 -~~~~~~~~dva~~~~~l~s~~ 235 (252)
T PRK12747 215 -FNRLGEVEDIADTAAFLASPD 235 (252)
T ss_pred -ccCCCCHHHHHHHHHHHcCcc
Confidence 123678999999999998743
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-22 Score=173.90 Aligned_cols=223 Identities=18% Similarity=0.167 Sum_probs=148.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+|+||||||+||++++++|+++|++|++++|+..... +....+ .++.++.+|++|.++++++++
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~--~~~~~l----~~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAR--EALAGI----DGVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHh----hhCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999753222 222222 137889999999998887664
Q ss_pred -CCCEEEEcccCCccCC--CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 77 -GCTGVFHLASPCIVDK--VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
++|+|||+||....+. ..+.+...+++|+.++..+++++ ++.+.+++|++||.+........ .......+
T Consensus 98 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~---~~~~~~~~ 174 (315)
T PRK06196 98 RRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRW---DDPHFTRG 174 (315)
T ss_pred CCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCc---cccCccCC
Confidence 5899999999753322 34567788999999977777654 44445799999998543322110 00111111
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
..+ ...|+.||.+.+.+++.++.+ .|+++++++||.+.+|.......... .............. ..+
T Consensus 175 ~~~------~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~ 244 (315)
T PRK06196 175 YDK------WLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQ-VALGWVDEHGNPID---PGF 244 (315)
T ss_pred CCh------HHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhh-hhhhhhhhhhhhhh---hhc
Confidence 111 145999999999998888765 48999999999999986432211000 00000000000000 014
Q ss_pred ccHHHHHHHHHHhhcCCC
Q 020608 227 VHFKDVALAHILVYENPS 244 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~ 244 (323)
..++|+|..++.++..+.
T Consensus 245 ~~~~~~a~~~~~l~~~~~ 262 (315)
T PRK06196 245 KTPAQGAATQVWAATSPQ 262 (315)
T ss_pred CCHhHHHHHHHHHhcCCc
Confidence 578999999999986543
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=170.95 Aligned_cols=214 Identities=19% Similarity=0.131 Sum_probs=144.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-CCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-GCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~Vih 83 (323)
+|+||||||||+||++++++|+++|++|+++.|+..+... ..........++.++.+|++|.+++.+++. ++|+|||
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTA--LRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH--HHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 5799999999999999999999999999999987533221 111122223468889999999999998887 8999999
Q ss_pred cccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhh
Q 020608 84 LASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC 155 (323)
Q Consensus 84 ~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~ 155 (323)
||+...... ..+.+...+++|+.++.++.+.+ ++.+.++||++||..+..+.+.
T Consensus 80 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~------------------ 141 (257)
T PRK09291 80 NAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGPF------------------ 141 (257)
T ss_pred CCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCCCC------------------
Confidence 999754322 23345678889999888777654 4455689999999855433221
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc--cCcCCCcccHH
Q 020608 156 RQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY--ENFFMGSVHFK 230 (323)
Q Consensus 156 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~i~v~ 230 (323)
...|+.+|.+.|.+++.++.+ .|++++++|||.+..+...........+... ....... ......++.++
T Consensus 142 ---~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (257)
T PRK09291 142 ---TGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDTMAETPKRWYDP--ARNFTDPEDLAFPLEQFDPQ 216 (257)
T ss_pred ---cchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhhhhhhhhhhcch--hhHHHhhhhhhccccCCCHH
Confidence 134999999999988877654 5999999999988654321100000000000 0000000 11112357889
Q ss_pred HHHHHHHHhhcCC
Q 020608 231 DVALAHILVYENP 243 (323)
Q Consensus 231 D~a~~~~~~~~~~ 243 (323)
|++..++.++..+
T Consensus 217 ~~~~~~~~~l~~~ 229 (257)
T PRK09291 217 EMIDAMVEVIPAD 229 (257)
T ss_pred HHHHHHHHHhcCC
Confidence 9999888887654
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=167.93 Aligned_cols=209 Identities=21% Similarity=0.186 Sum_probs=145.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEe-cCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATV-KNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
|++++||||+|+||++++++|+++|++|+++. |+.+ ...+....+...+.++.++.+|++|.++++++++
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 78 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLH--AAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDE 78 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChH--HHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999998754 4332 1122222233223467889999999998888766
Q ss_pred CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhhC-------CcCEEEEecccccccCCCCCCCCccc
Q 020608 77 GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKAL-------GVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+|+...... ..+.+...+++|+.++.++++++... ..++||++||..++++.+..
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~~------ 152 (247)
T PRK09730 79 PLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGE------ 152 (247)
T ss_pred CCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCCc------
Confidence 4689999999643211 22345678999999998888776332 13579999998666543310
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|...+.+++.++.+ .+++++++||+.+|||....... ...........+.
T Consensus 153 --------------~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~--~~~~~~~~~~~~~---- 212 (247)
T PRK09730 153 --------------YVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGE--PGRVDRVKSNIPM---- 212 (247)
T ss_pred --------------ccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCC--HHHHHHHHhcCCC----
Confidence 023999999999988887655 48999999999999996432211 1122222222221
Q ss_pred cCCCcccHHHHHHHHHHhhcCC
Q 020608 222 FFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
. ...+++|+|++++.++...
T Consensus 213 ~--~~~~~~dva~~~~~~~~~~ 232 (247)
T PRK09730 213 Q--RGGQPEEVAQAIVWLLSDK 232 (247)
T ss_pred C--CCcCHHHHHHHHHhhcChh
Confidence 1 1237899999999988754
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=168.04 Aligned_cols=210 Identities=20% Similarity=0.156 Sum_probs=148.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC---
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--- 77 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 77 (323)
|.+++|+++||||+|+||+++++.|+++|++|++..++... ........+ ..++.++.+|++|.+++.+++++
T Consensus 1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~-~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (253)
T PRK08642 1 MQISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSED-AAEALADEL---GDRAIALQADVTDREQVQAMFATATE 76 (253)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHH-HHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 67778999999999999999999999999999887654322 111111222 24688899999999988877652
Q ss_pred -----CCEEEEcccCCc---------c-CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCC
Q 020608 78 -----CTGVFHLASPCI---------V-DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKW 138 (323)
Q Consensus 78 -----~d~Vih~a~~~~---------~-~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~ 138 (323)
+|+|||+|+... . ..+.+.+.+.+++|+.++.++++++. +.+.+++|++||.....+..
T Consensus 77 ~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~-- 154 (253)
T PRK08642 77 HFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQNPVV-- 154 (253)
T ss_pred HhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC--
Confidence 899999998531 0 11234567789999999999999985 33457999999973221111
Q ss_pred CCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC
Q 020608 139 PADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC 215 (323)
Q Consensus 139 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 215 (323)
+.+.|+.+|.+.+.+++.++.++ |++++.++||.+..+...... .......+....
T Consensus 155 -------------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~--~~~~~~~~~~~~ 213 (253)
T PRK08642 155 -------------------PYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAAT--PDEVFDLIAATT 213 (253)
T ss_pred -------------------CccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccC--CHHHHHHHHhcC
Confidence 11459999999999999998773 799999999999886432211 111222222211
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+ ...+.+++|+|+++..++...
T Consensus 214 ~------~~~~~~~~~va~~~~~l~~~~ 235 (253)
T PRK08642 214 P------LRKVTTPQEFADAVLFFASPW 235 (253)
T ss_pred C------cCCCCCHHHHHHHHHHHcCch
Confidence 1 123789999999999999753
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=175.52 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=133.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|+++||||+|+||.+++++|+++|++|++++|+..+.. +....+.....++.++.+|++|.+++.++++
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAE--AAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 357889999999999999999999999999999998753222 2222332223468899999999998887765
Q ss_pred --CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhh----CC--cCEEEEecccccccCCCCCC--CC
Q 020608 77 --GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKA----LG--VKRVVVTSSISSITPSPKWP--AD 141 (323)
Q Consensus 77 --~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~~v~~SS~~~~~~~~~~~--~~ 141 (323)
++|+|||+||.... ..+.+.+...+++|+.++.++++++.. .+ .+++|++||...++...... ..
T Consensus 81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~ 160 (322)
T PRK07453 81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIP 160 (322)
T ss_pred CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCC
Confidence 48999999996432 123456788899999999999988743 22 35999999986544211100 00
Q ss_pred ccccCCC-------CCCh-----hhhccCCCchHHHHHHHHHHHHHHHHhC----CccEEEEcCCCccCCC
Q 020608 142 KVKDEDC-------WTDE-----EYCRQNEIWYPLSKTLAEKAAWEFAKEK----GLDVVVVNPGTVMGPV 196 (323)
Q Consensus 142 ~~~~e~~-------~~~~-----~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~Rp~~v~G~~ 196 (323)
.+...++ +..+ .....+...|+.||++.+.+++.+++++ |+.++++|||.|++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 161 APADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred CccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 0000000 0000 0001123679999999988888877664 7999999999998643
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=169.42 Aligned_cols=206 Identities=17% Similarity=0.135 Sum_probs=147.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|++|||||+|+||++++++|+++|++|++++|+..+. .++.++.+|++|+++++++++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-------------~~~~~~~~D~~~~~~i~~~~~~~~~~ 69 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY-------------NDVDYFKVDVSNKEQVIKGIDYVISK 69 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc-------------CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999875321 257889999999998887665
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||...... ..+.+...+++|+.++..+++++.. .+.+++|++||..++.+....
T Consensus 70 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 141 (258)
T PRK06398 70 YGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTRNA-------- 141 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCCCC--------
Confidence 5899999999753322 3345677899999999999888743 345799999998655433211
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCC----chhHHHHHHHHcCCCCCcc
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTL----NASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~----~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+.+.+.+.++.+. ++++++++||.+-+|...... ..................+
T Consensus 142 -------------~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (258)
T PRK06398 142 -------------AAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEMHP 208 (258)
T ss_pred -------------chhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhcCC
Confidence 449999999999999998775 489999999999877432100 0000000000000000011
Q ss_pred CcCCCcccHHHHHHHHHHhhcCC
Q 020608 221 NFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
. ..+..++|+|++++.++...
T Consensus 209 ~--~~~~~p~eva~~~~~l~s~~ 229 (258)
T PRK06398 209 M--KRVGKPEEVAYVVAFLASDL 229 (258)
T ss_pred c--CCCcCHHHHHHHHHHHcCcc
Confidence 1 12568999999999998753
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=166.42 Aligned_cols=222 Identities=12% Similarity=0.100 Sum_probs=156.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.....++.++.+|++|.+++.++++
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~--~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN--HVVDEIQQLGGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999988643222 2222222223467889999999998877654
Q ss_pred --CCCEEEEcccCCccC---CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVD---KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+|+..... ...+.+...+++|+.++.++++++. +.+.+++|++||.++..+....
T Consensus 86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~--------- 156 (255)
T PRK06113 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINM--------- 156 (255)
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCc---------
Confidence 579999999975322 1234566779999999999999985 3344699999998654433211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+ .+++++++.||.+..+...... .........+..+ ..
T Consensus 157 ------------~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~~------~~ 216 (255)
T PRK06113 157 ------------TSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQHTP------IR 216 (255)
T ss_pred ------------chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccccc--CHHHHHHHHhcCC------CC
Confidence 34999999999999998765 4899999999999887543211 1112222222211 11
Q ss_pred CcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 225 GSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
.+..++|++.+++.++..... .|+ +++.++
T Consensus 217 ~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg 249 (255)
T PRK06113 217 RLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249 (255)
T ss_pred CCcCHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence 256899999999999875432 354 445443
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=170.02 Aligned_cols=205 Identities=17% Similarity=0.114 Sum_probs=148.4
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 78 (323)
|+|+||||||+||++++++|+++|++|++++|+..... .....+...+.++.++.+|++|.+++.++++ ++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGE--ETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999988753322 2222233334578889999999988887665 68
Q ss_pred CEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 79 TGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 79 d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
|+|||+||...... ..+.+...+++|+.++.++++.+ ++.+.+++|++||..++.+....
T Consensus 79 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~------------ 146 (270)
T PRK05650 79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGPAM------------ 146 (270)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCCCCc------------
Confidence 99999999754322 22455668899998888877764 45566899999998665433221
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhH---HHHHHHHcCCCCCccCcCC
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASM---LMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+.+.++.+. |+++++++||.+.++.......... ........ .
T Consensus 147 ---------~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~----------~ 207 (270)
T PRK05650 147 ---------SSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLE----------K 207 (270)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHHhh----------c
Confidence 349999999998888887764 8999999999999885432111111 11111111 1
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
.+++++|+|+.++.++++.
T Consensus 208 ~~~~~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 208 SPITAADIADYIYQQVAKG 226 (270)
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 2578999999999999864
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=168.01 Aligned_cols=204 Identities=17% Similarity=0.169 Sum_probs=145.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 78 (323)
|+|+||||+|+||++++++|+++|++|++++|++++... ....+ +.+++++.+|++|.++++++++ ++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~--~~~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 75 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE--LKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWRNI 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH--HHHHh---ccceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 589999999999999999999999999999997532221 11111 2368889999999988877654 68
Q ss_pred CEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 79 TGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 79 d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
|+|||+||.... ..+.+.+.+++++|+.++..+++.+ ++.+.+++|++||.++..+...
T Consensus 76 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------ 143 (248)
T PRK10538 76 DVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAG------------ 143 (248)
T ss_pred CEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCCCC------------
Confidence 999999986421 1134566788999999977777665 4456679999999855433221
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC-CchhHHHHHHHHcCCCCCccCcCCC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT-LNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
.+.|+.+|...+.+.+.++.+. ++++++++||.+.|+..... ............. ...
T Consensus 144 ---------~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~~~~~---------~~~ 205 (248)
T PRK10538 144 ---------GNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQ---------NTV 205 (248)
T ss_pred ---------CchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHHHhhcc---------ccC
Confidence 1449999999999998887663 79999999999987643211 0000000001000 112
Q ss_pred cccHHHHHHHHHHhhcCCC
Q 020608 226 SVHFKDVALAHILVYENPS 244 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~ 244 (323)
++.++|+|++++.++..+.
T Consensus 206 ~~~~~dvA~~~~~l~~~~~ 224 (248)
T PRK10538 206 ALTPEDVSEAVWWVATLPA 224 (248)
T ss_pred CCCHHHHHHHHHHHhcCCC
Confidence 5689999999999987553
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=168.17 Aligned_cols=191 Identities=25% Similarity=0.201 Sum_probs=146.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|++++++|+||||+|+||++++++|+++|+ +|+++.|+..+... ...++.++.+|+.|.++++++++
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEAAS 72 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHhcC
Confidence 556778999999999999999999999999 99999987533211 13478899999999999888877
Q ss_pred CCCEEEEcccCCc-c----CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 GCTGVFHLASPCI-V----DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 ~~d~Vih~a~~~~-~----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
.+|+|||+|+... . ....+.+...+++|+.++.++++++. +.+.+++|++||..++.+....
T Consensus 73 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~--------- 143 (238)
T PRK08264 73 DVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFPNL--------- 143 (238)
T ss_pred CCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCCCc---------
Confidence 4799999999732 1 12345667889999999999999864 3456789999998665443211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|...+.+.+.++.+. +++++++||+.+.++..... . .
T Consensus 144 ------------~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~~------------~----------~ 189 (238)
T PRK08264 144 ------------GTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAGL------------D----------A 189 (238)
T ss_pred ------------hHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccccccC------------C----------c
Confidence 349999999999998887663 89999999999987742210 0 0
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
..+.++|+++.++..+...
T Consensus 190 ~~~~~~~~a~~~~~~~~~~ 208 (238)
T PRK08264 190 PKASPADVARQILDALEAG 208 (238)
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 1456788888888887753
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=167.78 Aligned_cols=193 Identities=22% Similarity=0.207 Sum_probs=145.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC----CCE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG----CTG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~d~ 80 (323)
|++++||||||+||++++++|+++|++|++++|+++. .+.+.+ ...++.++.+|++|.+++++++++ +|.
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~---~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~ 74 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSV---LDELHT---QSANIFTLAFDVTDHPGTKAALSQLPFIPEL 74 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHH---HHHHHH---hcCCCeEEEeeCCCHHHHHHHHHhcccCCCE
Confidence 4799999999999999999999999999999986422 122211 123678899999999999988774 589
Q ss_pred EEEcccCCcc-C---CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCCCChhh
Q 020608 81 VFHLASPCIV-D---KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEY 154 (323)
Q Consensus 81 Vih~a~~~~~-~---~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~ 154 (323)
+||+||.... + ...+.+...+++|+.++.++++++... +.+++|++||..+.++.+..
T Consensus 75 ~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~---------------- 138 (240)
T PRK06101 75 WIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELALPRA---------------- 138 (240)
T ss_pred EEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCCCCC----------------
Confidence 9999986432 1 123445678999999999999998653 23589999998655543221
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHH
Q 020608 155 CRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKD 231 (323)
Q Consensus 155 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D 231 (323)
..|+.+|...+.+++.++.+ .|++++++|||.+++|...... . ..+ ..+.++|
T Consensus 139 -----~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~-------------~--~~~----~~~~~~~ 194 (240)
T PRK06101 139 -----EAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNT-------------F--AMP----MIITVEQ 194 (240)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCC-------------C--CCC----cccCHHH
Confidence 34999999999998887743 5899999999999998643210 0 000 1367999
Q ss_pred HHHHHHHhhcCC
Q 020608 232 VALAHILVYENP 243 (323)
Q Consensus 232 ~a~~~~~~~~~~ 243 (323)
+|+.++..++..
T Consensus 195 ~a~~i~~~i~~~ 206 (240)
T PRK06101 195 ASQEIRAQLARG 206 (240)
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=169.75 Aligned_cols=211 Identities=15% Similarity=0.104 Sum_probs=151.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
++++++|||||+|+||.+++++|+++|++|++++|++.+.. +..+.+...+.++.++.+|+++.+++.++++
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~--~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLD--EVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999753222 2222232224568889999999998877655
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh-----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA-----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+|+..... ...+.+...+++|+.++.++++++.. .+.+++|++||..+..+....
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~-------- 157 (263)
T PRK07814 86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGRGF-------- 157 (263)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCCCC--------
Confidence 679999999864322 13356778899999999999999853 345799999998655433211
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
+.|+.+|.+.+.+++.++.+. +++++.++||.+.++....... ...+... ..+.. +. .
T Consensus 158 -------------~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~-~~~~~---~~--~ 217 (263)
T PRK07814 158 -------------AAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAA-NDELRAP-MEKAT---PL--R 217 (263)
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccC-CHHHHHH-HHhcC---CC--C
Confidence 349999999999999988764 5789999999998764321100 1111111 11111 11 1
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
.+..++|+|++++.++...
T Consensus 218 ~~~~~~~va~~~~~l~~~~ 236 (263)
T PRK07814 218 RLGDPEDIAAAAVYLASPA 236 (263)
T ss_pred CCcCHHHHHHHHHHHcCcc
Confidence 2457899999999998753
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=170.92 Aligned_cols=220 Identities=12% Similarity=0.085 Sum_probs=152.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhc----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.++.. +..+.+.. .+.++.++.+|++|.++++++++
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLK--KAREKIKSESNVDVSYIVADLTKREDLERTVKELKN 82 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999998753322 22222221 13468899999999998887765
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++||+||..... .+.+.+...+++|+.+...+++++ ++.+.+++|++||..+..+.+..
T Consensus 83 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~~~-------- 154 (263)
T PRK08339 83 IGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPNI-------- 154 (263)
T ss_pred hCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCCcc--------
Confidence 589999999964321 244667889999998887777665 34455799999998654333211
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC--------CchhHHHHHHHHcCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT--------LNASMLMLLRLLQGC 215 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~--------~~~~~~~~~~~~~g~ 215 (323)
..|+.+|.+.+.+.+.++.+. |++++.+.||.+.++..... ..........+.+.
T Consensus 155 -------------~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (263)
T PRK08339 155 -------------ALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKP- 220 (263)
T ss_pred -------------hhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhcc-
Confidence 339999999999999888774 89999999999987642100 00000111111111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+. ..+..++|+|.++..++.... ..|+..
T Consensus 221 ---~p~--~r~~~p~dva~~v~fL~s~~~~~itG~~~ 252 (263)
T PRK08339 221 ---IPL--GRLGEPEEIGYLVAFLASDLGSYINGAMI 252 (263)
T ss_pred ---CCc--ccCcCHHHHHHHHHHHhcchhcCccCceE
Confidence 111 125689999999999987533 345544
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=178.67 Aligned_cols=262 Identities=18% Similarity=0.182 Sum_probs=182.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC---CEEEEEecCCCcHHHHHHHhhc-------------cCCCCCeEEEEccCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR---YTVHATVKNLSDERETAHLKAL-------------EGADTRLRLFQIDLLD 67 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~~~Dl~~ 67 (323)
++|+|||||||||+|..|++.|+..- -+++++.|........+++... +....++..+.||+.+
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~~ 90 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDISE 90 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccccC
Confidence 67999999999999999999999753 3899999988665555554432 1123578889999986
Q ss_pred H------hHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCC
Q 020608 68 Y------DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 68 ~------~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~ 140 (323)
+ .+++.+.+.+|+|||+||-..+ .+.......+|+.|+.++++.|++.. .+-++|+||+.+- .....-.
T Consensus 91 ~~LGis~~D~~~l~~eV~ivih~AAtvrF---de~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n-~~~~~i~ 166 (467)
T KOG1221|consen 91 PDLGISESDLRTLADEVNIVIHSAATVRF---DEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSN-CNVGHIE 166 (467)
T ss_pred cccCCChHHHHHHHhcCCEEEEeeeeecc---chhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhee-ccccccc
Confidence 4 4566677899999999987544 45567788899999999999998874 7899999998554 2222111
Q ss_pred CccccCCCCCChh--------------------hhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCC-
Q 020608 141 DKVKDEDCWTDEE--------------------YCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPP- 199 (323)
Q Consensus 141 ~~~~~e~~~~~~~--------------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~- 199 (323)
+.+.++....++. ....++|.|..+|+.+|.++...+ .+++++|+||+.|......+
T Consensus 167 E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~st~~EP~ 244 (467)
T KOG1221|consen 167 EKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITSTYKEPF 244 (467)
T ss_pred ccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceeccccCCC
Confidence 2222222211111 112456899999999999998764 47999999999998864332
Q ss_pred -----CCchhHHHHHHHHcCCCCC---ccCcCCCcccHHHHHHHHHHhhcC----CC--CCccEEEE---cCccCHHHHH
Q 020608 200 -----TLNASMLMLLRLLQGCTDT---YENFFMGSVHFKDVALAHILVYEN----PS--ACGRHLCV---EAISHYGDFV 262 (323)
Q Consensus 200 -----~~~~~~~~~~~~~~g~~~~---~~~~~~~~i~v~D~a~~~~~~~~~----~~--~~~~~~~~---~~~~~~~e~~ 262 (323)
+...+...+....+|.... .++...++|.+|.|+.+.+.+.-. .. ..-+||++ ..+++|.++.
T Consensus 245 pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~~ 324 (467)
T KOG1221|consen 245 PGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDFI 324 (467)
T ss_pred CCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHHH
Confidence 2222222233333443222 344566799999999999976621 11 12359974 3579999999
Q ss_pred HHHHHHCCC
Q 020608 263 AKVAELYPE 271 (323)
Q Consensus 263 ~~i~~~~~~ 271 (323)
+...+....
T Consensus 325 e~~~~~~~~ 333 (467)
T KOG1221|consen 325 ELALRYFEK 333 (467)
T ss_pred HHHHHhccc
Confidence 999988743
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-22 Score=168.21 Aligned_cols=221 Identities=19% Similarity=0.176 Sum_probs=150.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.++++++|||||+|+||++++++|+++|++|++++|+.+... .....+.....++.++.+|+++.++++++++
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVD--AAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3456689999999999999999999999999999998753322 2222222223467889999999998887765
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+|+..... ...+.+...+++|+.++.++++++... ..+++|++||..+..+....
T Consensus 83 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~~~~-------- 154 (264)
T PRK07576 83 EFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPMPMQ-------- 154 (264)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCCCCc--------
Confidence 479999999854221 134456778899999999999987542 22699999998554433211
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+ .+++++.++||.+.+.................... .+ .
T Consensus 155 -------------~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~----~~--~ 215 (264)
T PRK07576 155 -------------AHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQS----VP--L 215 (264)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhc----CC--C
Confidence 34999999999999988766 47999999999987532110000000111111111 11 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
..+..++|+|++++.++.... ..|.+.
T Consensus 216 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~ 244 (264)
T PRK07576 216 KRNGTKQDIANAALFLASDMASYITGVVL 244 (264)
T ss_pred CCCCCHHHHHHHHHHHcChhhcCccCCEE
Confidence 225689999999999997532 245544
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=167.49 Aligned_cols=217 Identities=19% Similarity=0.176 Sum_probs=149.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|+++.|+.+.. . ..++.++.+|++|.++++++++
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--------~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--------L---PEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--------c---CCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 4679999999999999999999999999999999875321 1 2357889999999988776543
Q ss_pred -CCCEEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 -GCTGVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++ ++.+.+++|++||..+..+...
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~-------- 147 (260)
T PRK06523 76 GGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLPE-------- 147 (260)
T ss_pred CCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCC--------
Confidence 579999999964211 234567888999999998887765 3445578999999855432210
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch--------hHHHHHHHHcC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA--------SMLMLLRLLQG 214 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~--------~~~~~~~~~~g 214 (323)
....|+.+|...+.+++.++.++ |+++++++||.+.+|........ .......+...
T Consensus 148 ------------~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (260)
T PRK06523 148 ------------STTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDS 215 (260)
T ss_pred ------------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 01449999999999999888664 89999999999999853210000 00000011000
Q ss_pred CCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 215 CTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 215 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
. ...+. ..+..++|+|.++..++.... ..|+ +.+.+
T Consensus 216 ~-~~~p~--~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdg 254 (260)
T PRK06523 216 L-GGIPL--GRPAEPEEVAELIAFLASDRAASITGTEYVIDG 254 (260)
T ss_pred h-ccCcc--CCCCCHHHHHHHHHHHhCcccccccCceEEecC
Confidence 0 00111 125678999999999987532 2344 55544
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-22 Score=168.31 Aligned_cols=212 Identities=15% Similarity=0.072 Sum_probs=152.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+++||||+|+||++++++|+++|++|+++.|+.+... +....+...+.++.++.+|++|.++++++++
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVD--KGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH--HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999988653322 2222333323468899999999999888765
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.+|+|||+||..... ...+.+...+++|+.++..+++++. +.+.++||++||..+.++....
T Consensus 85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 156 (265)
T PRK07097 85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETV-------- 156 (265)
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC--------
Confidence 479999999976432 2345677888999999998888864 3445799999998655543221
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCc-----hhHHHHHHHHcCCCCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLN-----ASMLMLLRLLQGCTDT 218 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~-----~~~~~~~~~~~g~~~~ 218 (323)
..|+.+|.+.+.+++.++.+. |++++.++||.+.+|....... ........+....
T Consensus 157 -------------~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--- 220 (265)
T PRK07097 157 -------------SAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKT--- 220 (265)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcC---
Confidence 349999999999999998774 8999999999999985432100 0000111111111
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcC
Q 020608 219 YENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
+. ..+..++|+|..++.++..
T Consensus 221 -~~--~~~~~~~dva~~~~~l~~~ 241 (265)
T PRK07097 221 -PA--ARWGDPEDLAGPAVFLASD 241 (265)
T ss_pred -Cc--cCCcCHHHHHHHHHHHhCc
Confidence 11 1256789999999999975
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=164.44 Aligned_cols=204 Identities=19% Similarity=0.151 Sum_probs=144.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GCT 79 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 79 (323)
+++|+||||||+|+||++++++|+++|++|+++.|+..+ ...+..... +.+++.+|++|.+.+.++++ ++|
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~-~~~~l~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKD-AAERLAQET-----GATAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHH-HHHHHHHHh-----CCeEEecCCCCHHHHHHHHHHhCCCc
Confidence 567999999999999999999999999999887664321 111111111 35678899999888777665 489
Q ss_pred EEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEeccccccc-CCCCCCCCccccCCCCCCh
Q 020608 80 GVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSIT-PSPKWPADKVKDEDCWTDE 152 (323)
Q Consensus 80 ~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~-~~~~~~~~~~~~e~~~~~~ 152 (323)
+|||+||..... .+.+++...+++|+.++.+++..+... ..+++|++||..+.. +..
T Consensus 78 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---------------- 141 (237)
T PRK12742 78 ILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRMPVA---------------- 141 (237)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccCCCC----------------
Confidence 999999975332 134567889999999999998776543 246999999974421 111
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccH
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHF 229 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v 229 (323)
....|+.+|.+.+.+++.++.+ .|+++++++||.+..+...... . ......... +. ..+..+
T Consensus 142 -----~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~--~--~~~~~~~~~----~~--~~~~~p 206 (237)
T PRK12742 142 -----GMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANG--P--MKDMMHSFM----AI--KRHGRP 206 (237)
T ss_pred -----CCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcccccc--H--HHHHHHhcC----CC--CCCCCH
Confidence 1145999999999999888766 3799999999999887543211 1 111111111 11 125689
Q ss_pred HHHHHHHHHhhcCC
Q 020608 230 KDVALAHILVYENP 243 (323)
Q Consensus 230 ~D~a~~~~~~~~~~ 243 (323)
+|++.++..++...
T Consensus 207 ~~~a~~~~~l~s~~ 220 (237)
T PRK12742 207 EEVAGMVAWLAGPE 220 (237)
T ss_pred HHHHHHHHHHcCcc
Confidence 99999999998754
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-22 Score=172.39 Aligned_cols=209 Identities=18% Similarity=0.127 Sum_probs=151.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+|+||||+|+||++++++|+++|++|+++.|+.+... +..+.+...+.++.++.+|++|.++++++++
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~--~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQ--AVAEECRALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999998753322 2223333334567889999999999887764
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++|||||...... ..+.+...+++|+.++.++++++ ++.+.+++|++||..++.+.+..
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p~~-------- 153 (330)
T PRK06139 82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQPYA-------- 153 (330)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCCCc--------
Confidence 6899999999754322 23455678999999999988886 34445699999998655443221
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.||.+.+.+.+.++.+ .+++++.+.||.+.+|....... . .+... ..
T Consensus 154 -------------~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~----~-----~~~~~---~~ 208 (330)
T PRK06139 154 -------------AAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN----Y-----TGRRL---TP 208 (330)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc----c-----ccccc---cC
Confidence 34999999888887777655 27999999999999986432110 0 01100 01
Q ss_pred CCCcccHHHHHHHHHHhhcCCCC
Q 020608 223 FMGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
...+.+++|+|++++.+++++..
T Consensus 209 ~~~~~~pe~vA~~il~~~~~~~~ 231 (330)
T PRK06139 209 PPPVYDPRRVAKAVVRLADRPRA 231 (330)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCC
Confidence 12257899999999999987643
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=158.72 Aligned_cols=295 Identities=17% Similarity=0.101 Sum_probs=212.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEe-cCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATV-KNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 79 (323)
+-.+|||||+-|.+|..++..|... |.+-+++. ...+.... -..--++..|+.|...+++..- .+|
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V----------~~~GPyIy~DILD~K~L~eIVVn~RId 112 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANV----------TDVGPYIYLDILDQKSLEEIVVNKRID 112 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhh----------cccCCchhhhhhccccHHHhhcccccc
Confidence 3468999999999999999999865 66544442 22111111 0123467789988888887654 689
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
-+||..+..+. ..+.+.....++|+.|.-|+++.|++++. ++...|+++++++.... .|-+.- ....+.
T Consensus 113 WL~HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPR---NPTPdl------tIQRPR 181 (366)
T KOG2774|consen 113 WLVHFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPR---NPTPDL------TIQRPR 181 (366)
T ss_pred eeeeHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCC---CCCCCe------eeecCc
Confidence 99999886543 23444555789999999999999999986 77788998777655321 111111 113455
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccC---CCCCCCCchhHHHHHHHHcCCCCC--ccCcCCCcccHHHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMG---PVIPPTLNASMLMLLRLLQGCTDT--YENFFMGSVHFKDVAL 234 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G---~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~i~v~D~a~ 234 (323)
+.||.||.-+|-+-+.+..++|+++-++|.+.+.. |+..........+..+..+|+... -++.+.++.|.+|+..
T Consensus 182 TIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~ 261 (366)
T KOG2774|consen 182 TIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMA 261 (366)
T ss_pred eeechhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHH
Confidence 88999999999999999888999999999665554 333333344455667777787654 5788888999999999
Q ss_pred HHHHhhcCCCC---CccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCC--ccccccchhH-hhhCCcc-cCHHH
Q 020608 235 AHILVYENPSA---CGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGL--LRTKDGAKKL-MDLGLQF-IPMDQ 307 (323)
Q Consensus 235 ~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~lG~~~-~~~~~ 307 (323)
+++.++..+.. ...||+++...|..|++..+.+.+|.+.+.+....+.... -+..+|-+.+ +++.|+- .++..
T Consensus 262 ~~~~~~~a~~~~lkrr~ynvt~~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l~~ 341 (366)
T KOG2774|consen 262 SVIQLLAADSQSLKRRTYNVTGFSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHLLS 341 (366)
T ss_pred HHHHHHhCCHHHhhhheeeeceeccCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCchhHhhHHHHhhhhhHHH
Confidence 99999876543 2349999999999999999999999887665443332211 1235566666 9999998 88888
Q ss_pred HHHHHHHHHHHc
Q 020608 308 IIKDSVESLKAK 319 (323)
Q Consensus 308 ~l~~~~~~~~~~ 319 (323)
-+.-+++-.+.+
T Consensus 342 ~i~~~i~~~~~n 353 (366)
T KOG2774|consen 342 IISTVVAVHKSN 353 (366)
T ss_pred HHHHHHHHHHhh
Confidence 888777766654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-22 Score=166.59 Aligned_cols=204 Identities=17% Similarity=0.180 Sum_probs=148.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
+||+++||||+|+||+.++++|+++|++|++++|++++.. .....+.....++.++.+|++|.+++.++++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALE--ALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5678999999999999999999999999999999753322 2222222223468889999999998877665
Q ss_pred CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+|||+||...... ..+.+...+++|+.++.++++.+ ++.+.+++|++||..++.+....
T Consensus 83 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~---------- 152 (241)
T PRK07454 83 CPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFPQW---------- 152 (241)
T ss_pred CCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCCCc----------
Confidence 4899999999753321 23456778899999998888776 33445799999998655433211
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|...+.+.+.++.+ .|++++++|||.+-+|....... ... . ....
T Consensus 153 -----------~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~~-----~~~--------~--~~~~ 206 (241)
T PRK07454 153 -----------GAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETV-----QAD--------F--DRSA 206 (241)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccccccc-----ccc--------c--cccc
Confidence 34999999999998887654 48999999999998875321100 000 0 0112
Q ss_pred cccHHHHHHHHHHhhcCCCC
Q 020608 226 SVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~~ 245 (323)
++.++|+|++++.++..+..
T Consensus 207 ~~~~~~va~~~~~l~~~~~~ 226 (241)
T PRK07454 207 MLSPEQVAQTILHLAQLPPS 226 (241)
T ss_pred CCCHHHHHHHHHHHHcCCcc
Confidence 57899999999999987643
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=164.86 Aligned_cols=220 Identities=17% Similarity=0.147 Sum_probs=154.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.++++++|||||+|+||+.+++.|+++|++|++++|+..... .....+...+.++.++.+|+++.++++++++
T Consensus 1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLE--EAVAECGALGTEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999988753221 2222222224568889999999888776554
Q ss_pred ---CCCEEEEcccCCccC-------------CCCCchhhhhhHHHHHHHHHHHHHh----hC-CcCEEEEecccccccCC
Q 020608 77 ---GCTGVFHLASPCIVD-------------KVEDPQNQLLNPAVKGTVNVLTAAK----AL-GVKRVVVTSSISSITPS 135 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~-------------~~~~~~~~~~~~n~~~~~~l~~~~~----~~-~~~~~v~~SS~~~~~~~ 135 (323)
.+|+|||+||..... ...+.+...+++|+.++..+++.+. +. ...++|++||. ..++.
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~-~~~~~ 157 (253)
T PRK08217 79 DFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSI-ARAGN 157 (253)
T ss_pred HcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccc-cccCC
Confidence 479999999864321 1224556788899999988776542 22 23479999987 33433
Q ss_pred CCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHH
Q 020608 136 PKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLL 212 (323)
Q Consensus 136 ~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~ 212 (323)
... ..|+.+|.+.+.+++.++.+ .+++++.++||.+.++...... ........
T Consensus 158 ~~~---------------------~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~---~~~~~~~~ 213 (253)
T PRK08217 158 MGQ---------------------TNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMK---PEALERLE 213 (253)
T ss_pred CCC---------------------chhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccC---HHHHHHHH
Confidence 211 34999999999999988765 5899999999999988643211 12222222
Q ss_pred cCCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCcc-EEEEc
Q 020608 213 QGCTDTYENFFMGSVHFKDVALAHILVYENPSACGR-HLCVE 253 (323)
Q Consensus 213 ~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~ 253 (323)
.+.+ ...+.+++|+|+++..++......|. +++.+
T Consensus 214 ~~~~------~~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~g 249 (253)
T PRK08217 214 KMIP------VGRLGEPEEIAHTVRFIIENDYVTGRVLEIDG 249 (253)
T ss_pred hcCC------cCCCcCHHHHHHHHHHHHcCCCcCCcEEEeCC
Confidence 2221 12256899999999999976544454 55544
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=165.71 Aligned_cols=218 Identities=19% Similarity=0.154 Sum_probs=152.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++++++|||||+|+||++++++|+++|+.|++..|+.+... +....+ ..++.++.+|+++.++++++++
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~--~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLE--ALAAEL---GERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHH--HHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999988877643222 111111 2367889999999998887653
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+|+..... ...+.+...+++|+.++.++++++.+ .+.++||++||.++.++.+..
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-------- 149 (245)
T PRK12936 78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPGQ-------- 149 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCCCC--------
Confidence 589999999975321 13346678899999999999888642 345799999998676654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|...+.+++.++.+ .++++++++||.+.++...... ....... .+. .+ .
T Consensus 150 -------------~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~---~~~~~~~-~~~---~~--~ 207 (245)
T PRK12936 150 -------------ANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLN---DKQKEAI-MGA---IP--M 207 (245)
T ss_pred -------------cchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccC---hHHHHHH-hcC---CC--C
Confidence 34999999888888777655 3899999999998776432211 1111111 111 11 1
Q ss_pred CCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
..+.+++|++.++..++..... .|. +++.++
T Consensus 208 ~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 208 KRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred CCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 2256799999999988865332 344 555443
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=167.52 Aligned_cols=211 Identities=17% Similarity=0.109 Sum_probs=151.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+++||||+|+||++++++|++.|++|++++|... ....+.+. ..+.++..+.+|++|.++++++++
T Consensus 6 ~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~-~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 6 FSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP-TETIEQVT---ALGRRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch-HHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999998876532 22222222 223467889999999988887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|++|||||...... ..+++.+.+++|+.++.++++++.. .+ .+++|++||..++.+....
T Consensus 82 ~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------ 155 (253)
T PRK08993 82 EFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRV------ 155 (253)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCCC------
Confidence 5799999999753221 3456888999999999999998743 22 3589999998665543321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.+ .|++++.++||.+..+..... .........+... .+.
T Consensus 156 ---------------~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~-~~~~~~~~~~~~~----~p~ 215 (253)
T PRK08993 156 ---------------PSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQL-RADEQRSAEILDR----IPA 215 (253)
T ss_pred ---------------cchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhh-ccchHHHHHHHhc----CCC
Confidence 23999999999999888776 489999999999988753211 0001111111111 111
Q ss_pred cCCCcccHHHHHHHHHHhhcCC
Q 020608 222 FFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+ .+..++|+|.+++.++...
T Consensus 216 ~--r~~~p~eva~~~~~l~s~~ 235 (253)
T PRK08993 216 G--RWGLPSDLMGPVVFLASSA 235 (253)
T ss_pred C--CCcCHHHHHHHHHHHhCcc
Confidence 1 2667899999999999754
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=167.06 Aligned_cols=210 Identities=19% Similarity=0.147 Sum_probs=148.9
Q ss_pred CCCCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCC---------cHHHHHHHhhccCCCCCeEEEEccCCCHh
Q 020608 1 MSKEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLS---------DERETAHLKALEGADTRLRLFQIDLLDYD 69 (323)
Q Consensus 1 m~~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 69 (323)
|++++|+|||||||| +||.+++++|+++|++|+++.|++. ..........+...+.+++++.+|+++.+
T Consensus 1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 80 (256)
T PRK12748 1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPY 80 (256)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 778889999999995 7999999999999999999988732 11111112222222346889999999998
Q ss_pred HHHHHhc-------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC----CcCEEEEecccccccC
Q 020608 70 AIAAAVT-------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL----GVKRVVVTSSISSITP 134 (323)
Q Consensus 70 ~~~~~~~-------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~v~~SS~~~~~~ 134 (323)
++.++++ .+|+|||+|+...... ..+.+...+++|+.++..+++++... +.+++|++||..++.+
T Consensus 81 ~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~ 160 (256)
T PRK12748 81 APNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGP 160 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCC
Confidence 8776654 4799999998753322 23456778999999999999997532 3469999999855443
Q ss_pred CCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHH
Q 020608 135 SPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRL 211 (323)
Q Consensus 135 ~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~ 211 (323)
.... ..|+.+|.+.+.+++.++.+ .+++++.++||.+..+..... .....
T Consensus 161 ~~~~---------------------~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~~------~~~~~ 213 (256)
T PRK12748 161 MPDE---------------------LAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITEE------LKHHL 213 (256)
T ss_pred CCCc---------------------hHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCChh------HHHhh
Confidence 2211 34999999999998888766 489999999999887753211 11111
Q ss_pred HcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 212 LQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 212 ~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
.... +. ..+..++|+|+++..++...
T Consensus 214 ~~~~----~~--~~~~~~~~~a~~~~~l~~~~ 239 (256)
T PRK12748 214 VPKF----PQ--GRVGEPVDAARLIAFLVSEE 239 (256)
T ss_pred hccC----CC--CCCcCHHHHHHHHHHHhCcc
Confidence 1111 11 11456899999999888754
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-22 Score=167.53 Aligned_cols=215 Identities=17% Similarity=0.176 Sum_probs=146.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC-cHHH-HHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-DERE-TAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|++|||||+|+||.++++.|+++|++|+++.++.. .... ....+.+...+.++.++.+|+++.++++++++
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999777776542 2222 22222333223468889999999999887765
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEe-cccccccCCCCCCCCccccC
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVT-SSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~-SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... ...+.+...+++|+.++..+++++... ..++++++ ||....+ .+.
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~-~~~--------- 155 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF-TPF--------- 155 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc-CCC---------
Confidence 579999999974321 234457788999999999999998643 12466665 4432221 110
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
...|+.+|.+.|.+++.++.+. |+++++++||.+.++......... ... .........+...
T Consensus 156 ------------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~--~~~-~~~~~~~~~~~~~ 220 (257)
T PRK12744 156 ------------YSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAE--AVA-YHKTAAALSPFSK 220 (257)
T ss_pred ------------cccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccc--hhh-ccccccccccccc
Confidence 1449999999999999998775 799999999999887532211100 000 0000000111112
Q ss_pred CCcccHHHHHHHHHHhhcC
Q 020608 224 MGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~ 242 (323)
..+.+++|+|.++..+++.
T Consensus 221 ~~~~~~~dva~~~~~l~~~ 239 (257)
T PRK12744 221 TGLTDIEDIVPFIRFLVTD 239 (257)
T ss_pred CCCCCHHHHHHHHHHhhcc
Confidence 2478999999999999984
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=166.43 Aligned_cols=212 Identities=17% Similarity=0.134 Sum_probs=153.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC--CCCeEEEEccCCCHhHHHHHhc---
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
.+++|+++||||+|+||+++++.|+++|++|++++|+.++.. +...++... +.++.++.+|+++.++++++++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALA--QARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH--HHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998753322 222222221 3468889999999988776654
Q ss_pred ----CCCEEEEcccCCcc----CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ----GCTGVFHLASPCIV----DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||.... ....+++...+++|+.++.++++++. +.+.+++|++||..++.+....
T Consensus 84 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~------ 157 (257)
T PRK09242 84 DHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVRSG------ 157 (257)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCCCC------
Confidence 57999999997422 12445678889999999999999874 3445799999998655443221
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.+ .+++++.++||.+.+|........ ...........+.
T Consensus 158 ---------------~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~-~~~~~~~~~~~~~---- 217 (257)
T PRK09242 158 ---------------APYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSD-PDYYEQVIERTPM---- 217 (257)
T ss_pred ---------------cchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCC-hHHHHHHHhcCCC----
Confidence 34999999999999988765 389999999999999865422111 1122222222111
Q ss_pred cCCCcccHHHHHHHHHHhhcCC
Q 020608 222 FFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
..+..++|++.++..++...
T Consensus 218 --~~~~~~~~va~~~~~l~~~~ 237 (257)
T PRK09242 218 --RRVGEPEEVAAAVAFLCMPA 237 (257)
T ss_pred --CCCcCHHHHHHHHHHHhCcc
Confidence 11446899999999998653
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-22 Score=168.52 Aligned_cols=203 Identities=23% Similarity=0.149 Sum_probs=147.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------- 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 76 (323)
||++|||||||+||++++++|+++|++|++++|+...... ....+. +.+++++.+|++|.+++.++++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~--~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAA--LAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH--HHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999987532221 111221 3468899999999998877654
Q ss_pred CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+||||||...... +.+.+...+++|+.++.++++++. ..+.+++|++||..+.++....
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~---------- 146 (260)
T PRK08267 77 RLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPGL---------- 146 (260)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCCc----------
Confidence 4699999999754322 234567889999999999998874 3445799999998777654321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|.+.+.+.+.++.+ .++++++++||.+.++....... . ........ ...
T Consensus 147 -----------~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~-~--~~~~~~~~--------~~~ 204 (260)
T PRK08267 147 -----------AVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSN-E--VDAGSTKR--------LGV 204 (260)
T ss_pred -----------hhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccc-h--hhhhhHhh--------ccC
Confidence 34999999999998888755 38999999999998765332000 0 00000000 011
Q ss_pred cccHHHHHHHHHHhhcCC
Q 020608 226 SVHFKDVALAHILVYENP 243 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~ 243 (323)
.+.++|+|++++.+++..
T Consensus 205 ~~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 205 RLTPEDVAEAVWAAVQHP 222 (260)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 356899999999999754
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=163.92 Aligned_cols=208 Identities=19% Similarity=0.191 Sum_probs=148.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|+++||||+|+||+++++.|+++|++|+++.|+.. ...............++.++.+|++|.+++.++++ +
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 479999999999999999999999999999998753 22222222222223468899999999998877665 4
Q ss_pred CCEEEEcccCCcc----CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 78 CTGVFHLASPCIV----DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 78 ~d~Vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+|+|||+|+.... ....+.+...+++|+.++.++++++ ++.+.++||++||..+..+....
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~----------- 149 (245)
T PRK12824 81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQFGQ----------- 149 (245)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCCCC-----------
Confidence 7999999997532 1234566788999999999986654 44556799999998655433221
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
..|+.+|.+.+.+++.++.+ .++++++++||.+.+|...... ...........+ ...+
T Consensus 150 ----------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~---~~~~~~~~~~~~------~~~~ 210 (245)
T PRK12824 150 ----------TNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG---PEVLQSIVNQIP------MKRL 210 (245)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC---HHHHHHHHhcCC------CCCC
Confidence 23999999999888887754 4899999999999988643221 112222222211 1124
Q ss_pred ccHHHHHHHHHHhhcCC
Q 020608 227 VHFKDVALAHILVYENP 243 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~ 243 (323)
..++|+++++..++...
T Consensus 211 ~~~~~va~~~~~l~~~~ 227 (245)
T PRK12824 211 GTPEEIAAAVAFLVSEA 227 (245)
T ss_pred CCHHHHHHHHHHHcCcc
Confidence 57899999999888643
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=168.91 Aligned_cols=202 Identities=16% Similarity=0.106 Sum_probs=147.3
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|+++||||+|+||++++++|+++|++|++++|+.+..+ +..+++...+.++.++.+|++|.+++.++++
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~--~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLD--AVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999753222 2222222223467889999999998888776
Q ss_pred --CCCEEEEcccCCccCCC------CCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 --GCTGVFHLASPCIVDKV------EDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
.+|+||||||....... .+.+...+++|+.++.++++++. +.+.+++|++||.+++.....
T Consensus 115 ~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~p------- 187 (293)
T PRK05866 115 IGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEASP------- 187 (293)
T ss_pred cCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCC-------
Confidence 78999999997543221 13446789999999998888753 455679999999744321110
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..+.|+.+|.+.+.+++.++.+. |+++++++||.+-++...... ..
T Consensus 188 -------------~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~~-----------~~------- 236 (293)
T PRK05866 188 -------------LFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTK-----------AY------- 236 (293)
T ss_pred -------------CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccccc-----------cc-------
Confidence 01459999999999988887664 899999999998877532100 00
Q ss_pred cCCCcccHHHHHHHHHHhhcCC
Q 020608 222 FFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
.....+.++++|+.++.++++.
T Consensus 237 ~~~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 237 DGLPALTADEAAEWMVTAARTR 258 (293)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC
Confidence 0012457999999999999864
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-21 Score=168.68 Aligned_cols=185 Identities=18% Similarity=0.145 Sum_probs=129.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+|+||||+|+||++++++|+++|++|+++.|+..... +..+.+.. .+.++.++.+|++|.++++++++
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGK--AAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999998753322 12222211 13468889999999998887654
Q ss_pred ---CCCEEEEcccCCccCC--CCCchhhhhhHHHHH----HHHHHHHHhhCCcCEEEEeccccccc-CCCCCCCCccccC
Q 020608 77 ---GCTGVFHLASPCIVDK--VEDPQNQLLNPAVKG----TVNVLTAAKALGVKRVVVTSSISSIT-PSPKWPADKVKDE 146 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~--~~~~~~~~~~~n~~~----~~~l~~~~~~~~~~~~v~~SS~~~~~-~~~~~~~~~~~~e 146 (323)
++|+|||+||...... ..+.+...+++|+.+ +..++..+++.+.++||++||.+... +... .....+
T Consensus 92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~---~~~~~~ 168 (306)
T PRK06197 92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIH---FDDLQW 168 (306)
T ss_pred hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCC---ccccCc
Confidence 5899999999754322 345667889999999 55555555665567999999985432 2111 111111
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEE--EcCCCccCCCCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVV--VNPGTVMGPVIP 198 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~--~Rp~~v~G~~~~ 198 (323)
+.+..+ ...|+.||.+.+.+.+.++.+. ++++++ +.||.|.++...
T Consensus 169 ~~~~~~------~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~ 219 (306)
T PRK06197 169 ERRYNR------VAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELAR 219 (306)
T ss_pred ccCCCc------HHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcccc
Confidence 111111 2569999999999999887764 665555 479999887543
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=164.36 Aligned_cols=210 Identities=16% Similarity=0.144 Sum_probs=148.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
|++|+++||||+|+||++++++|+++|++|++..+.. .....+..+.+...+.++..+.+|++|.++++++++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPN-SPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCC-hHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999998865432 222223333333334467788999999998877664
Q ss_pred -CCCEEEEcccCCcc----CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIV----DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+|+.... ....+.+...+++|+.++.++++++ ++.+.+++|++||..+..+....
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~--------- 150 (246)
T PRK12938 80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQ--------- 150 (246)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCCCC---------
Confidence 58999999997532 1134567788999999988877665 34556799999998554433211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++++ .++++++++||.+.+|...... ......+....+ ..
T Consensus 151 ------------~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~---~~~~~~~~~~~~------~~ 209 (246)
T PRK12938 151 ------------TNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIR---PDVLEKIVATIP------VR 209 (246)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcC---hHHHHHHHhcCC------cc
Confidence 34999999999888887765 4899999999999988643211 112222222211 11
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
.+..++|++.++..++...
T Consensus 210 ~~~~~~~v~~~~~~l~~~~ 228 (246)
T PRK12938 210 RLGSPDEIGSIVAWLASEE 228 (246)
T ss_pred CCcCHHHHHHHHHHHcCcc
Confidence 2457899999999988654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=171.94 Aligned_cols=206 Identities=17% Similarity=0.082 Sum_probs=147.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++++|+||||+|+||++++++|+++|++|++++|+.+... +..+++...+.++.++.+|++|.++++++++
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~--~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLE--ALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 45689999999999999999999999999999998743222 2222333334578889999999999887754
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
.+|++||+|+...... ..+.+...+++|+.++.++++.+ ++.+.++||++||..++.+.+..
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~~~--------- 154 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIPLQ--------- 154 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCCcc---------
Confidence 6899999999753321 34456778899988877766654 44455799999999665433211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh-----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+.+.++.+ .++++++++||.+.+|.... ........ ...
T Consensus 155 ------------~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~--------~~~~~~~~----~~~ 210 (334)
T PRK07109 155 ------------SAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDW--------ARSRLPVE----PQP 210 (334)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhh--------hhhhcccc----ccC
Confidence 34999999999888877655 36999999999998874221 00000010 111
Q ss_pred CCCcccHHHHHHHHHHhhcCC
Q 020608 223 FMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~ 243 (323)
...+..++|+|++++.+++++
T Consensus 211 ~~~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 211 VPPIYQPEVVADAILYAAEHP 231 (334)
T ss_pred CCCCCCHHHHHHHHHHHHhCC
Confidence 123678999999999999875
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=164.92 Aligned_cols=218 Identities=18% Similarity=0.173 Sum_probs=152.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++++++||||+|+||++++++|+++|++|++++|+.. ..+....+...+.++.++.+|+++.++++++++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE---IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH---HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56799999999999999999999999999999988642 112222222223467889999999998887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccc-cCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSI-TPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~-~~~~~~~~~~~~~e 146 (323)
.+|+|||+||...... ..+.+.+.+++|+.++.++++++.. .+.+++|++||..+. .+...
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~--------- 151 (263)
T PRK08226 81 GRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPG--------- 151 (263)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccCCCC---------
Confidence 5799999999754322 2334566799999999999998643 345699999997442 11111
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC-----CchhHHHHHHHHcCCCCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT-----LNASMLMLLRLLQGCTDT 218 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~-----~~~~~~~~~~~~~g~~~~ 218 (323)
...|+.+|.+.+.+++.++.++ +++++.++||.+.+|..... ..........+..+.+
T Consensus 152 ------------~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p-- 217 (263)
T PRK08226 152 ------------ETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIP-- 217 (263)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCC--
Confidence 1349999999999999988764 89999999999998843210 0001112222222221
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCC--CCCccEE
Q 020608 219 YENFFMGSVHFKDVALAHILVYENP--SACGRHL 250 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~ 250 (323)
. ..+..++|+|.++..++... ...|+.+
T Consensus 218 --~--~~~~~~~~va~~~~~l~~~~~~~~~g~~i 247 (263)
T PRK08226 218 --L--RRLADPLEVGELAAFLASDESSYLTGTQN 247 (263)
T ss_pred --C--CCCCCHHHHHHHHHHHcCchhcCCcCceE
Confidence 1 12468999999999888643 2345544
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=163.77 Aligned_cols=219 Identities=15% Similarity=0.148 Sum_probs=149.3
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+++||||+|+||++++++|+++|++|+++.|+... ..+.+.. .++.++.+|++|.++++++++
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~--~~~~l~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAEN--EAKELRE-----KGVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHH--HHHHHHh-----CCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 3456999999999999999999999999999988765421 1122211 147889999999998887765
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+||||||..... ...+.+...+++|+.++..+++.+ ++.+.+++|++||..++.....
T Consensus 77 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~--------- 147 (255)
T PRK06463 77 FGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAAE--------- 147 (255)
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCCC---------
Confidence 579999999875321 134456788999999976665554 4445579999999855432110
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCC-chh-HHHHHHHHcCCCCCccC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTL-NAS-MLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~-~~~-~~~~~~~~~g~~~~~~~ 221 (323)
....|+.+|.+.+.+++.++.+ .|+++++++||.+-.+...... ... ......+....+
T Consensus 148 -----------~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----- 211 (255)
T PRK06463 148 -----------GTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTV----- 211 (255)
T ss_pred -----------CccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCC-----
Confidence 0134999999999999998866 4899999999999776432110 000 011111111111
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
...+..++|+|.+++.++..... .|. +.+.+
T Consensus 212 -~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dg 245 (255)
T PRK06463 212 -LKTTGKPEDIANIVLFLASDDARYITGQVIVADG 245 (255)
T ss_pred -cCCCcCHHHHHHHHHHHcChhhcCCCCCEEEECC
Confidence 12256799999999999875432 345 44544
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=162.86 Aligned_cols=199 Identities=21% Similarity=0.172 Sum_probs=144.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------C
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------G 77 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~ 77 (323)
.+|+++||||+|+||++++++|+++|++|+++.|+..+. . ..+++.+|++|.++++++++ +
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~ 68 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD--------F-----PGELFACDLADIEQTAATLAQINEIHP 68 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc--------c-----CceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence 568999999999999999999999999999999976431 0 12568899999998877765 5
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+|+|||+|+...... ..+++...+++|+.++.++.+++ ++.+.+++|++||.+ .++....
T Consensus 69 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~-~~~~~~~----------- 136 (234)
T PRK07577 69 VDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRA-IFGALDR----------- 136 (234)
T ss_pred CcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcccc-ccCCCCc-----------
Confidence 799999999754322 33456678999999998887776 345567999999984 3332211
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
..|+.+|...+.+++.++.+ .|++++++|||.+.++.................... +. ..+
T Consensus 137 ----------~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~----~~--~~~ 200 (234)
T PRK07577 137 ----------TSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASI----PM--RRL 200 (234)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcC----CC--CCC
Confidence 34999999999998887755 489999999999998764321110011111122211 11 114
Q ss_pred ccHHHHHHHHHHhhcCC
Q 020608 227 VHFKDVALAHILVYENP 243 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~ 243 (323)
..++|+|.+++.++..+
T Consensus 201 ~~~~~~a~~~~~l~~~~ 217 (234)
T PRK07577 201 GTPEEVAAAIAFLLSDD 217 (234)
T ss_pred cCHHHHHHHHHHHhCcc
Confidence 57899999999999764
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=164.86 Aligned_cols=197 Identities=15% Similarity=0.113 Sum_probs=146.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+|+++||||+|+||++++++|+++|++|++++|++.+... ....+.. .+.+++++.+|++|.+++.++++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEE--LKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH--HHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999999987533222 1122211 13468889999999988877654
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++. +.+.+++|++||..+..+.+.
T Consensus 80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 149 (248)
T PRK08251 80 GGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPG---------- 149 (248)
T ss_pred CCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCC----------
Confidence 6899999999754322 233456788999999999998863 445679999999866554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
+...|+.+|.+.+.+++.++.++ ++++++++||.+.++..... +. ..
T Consensus 150 ----------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~-------------~~-------~~ 199 (248)
T PRK08251 150 ----------VKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAKA-------------KS-------TP 199 (248)
T ss_pred ----------CcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhcc-------------cc-------CC
Confidence 01449999999999988887653 79999999999988643210 00 11
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
..+..+|+|++++.++++.
T Consensus 200 ~~~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 200 FMVDTETGVKALVKAIEKE 218 (248)
T ss_pred ccCCHHHHHHHHHHHHhcC
Confidence 2567999999999999854
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=166.84 Aligned_cols=219 Identities=21% Similarity=0.181 Sum_probs=152.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHH-----HHHHHhhccCCCCCeEEEEccCCCHhHHHHHh
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDER-----ETAHLKALEGADTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
|.+++|+++||||+|+||++++++|+++|++|+++.|+.+... ..+..+++...+.++.++.+|+++.+++.+++
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 4567899999999999999999999999999999998764311 11112223323446888999999999888776
Q ss_pred c-------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCC
Q 020608 76 T-------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 76 ~-------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
+ ++|+|||+||...... ..+.+...+++|+.++.++++++.. .+.++++++||.....+. +
T Consensus 82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~--~-- 157 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPK--W-- 157 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcccc--c--
Confidence 5 6899999999754322 2345677889999999999999853 234589999986332211 0
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCC-ccCCCCCCCCchhHHHHHHHHcCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGT-VMGPVIPPTLNASMLMLLRLLQGCT 216 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~-v~G~~~~~~~~~~~~~~~~~~~g~~ 216 (323)
.. ....|+.+|.+.|.+++.++.++ +++++.+.|+. +-.+... ....+..
T Consensus 158 ---------~~------~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~~-----------~~~~~~~ 211 (273)
T PRK08278 158 ---------FA------PHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAAVR-----------NLLGGDE 211 (273)
T ss_pred ---------cC------CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHHHH-----------hcccccc
Confidence 00 11459999999999999988775 89999999984 4333211 1111110
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcC
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLCVEA 254 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~ 254 (323)
....+..++|+|++++.++.... ..|++.+.++
T Consensus 212 -----~~~~~~~p~~va~~~~~l~~~~~~~~~G~~~~~~~ 246 (273)
T PRK08278 212 -----AMRRSRTPEIMADAAYEILSRPAREFTGNFLIDEE 246 (273)
T ss_pred -----cccccCCHHHHHHHHHHHhcCccccceeEEEeccc
Confidence 01125689999999999987543 3455554333
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=166.23 Aligned_cols=205 Identities=21% Similarity=0.181 Sum_probs=143.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------- 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 76 (323)
+|+|+||||+|+||+++++.|+++|++|+++.|+..+. +.... .+++.+.+|++|.+++.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~---~~~~~-----~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDV---ARMNS-----LGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHh---HHHHh-----CCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 37899999999999999999999999999998875322 22211 146788999999888766543
Q ss_pred CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHH----HHHHhhCCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNV----LTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
.+|.+||+||...... ..+.+...+++|+.++.++ ++.+++.+.+++|++||..+..+...
T Consensus 74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~----------- 142 (256)
T PRK08017 74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLISTPG----------- 142 (256)
T ss_pred CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccCCCC-----------
Confidence 4689999999654321 3345667899999998886 45555666789999999855433221
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHH---hCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAK---EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFM 224 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 224 (323)
.+.|+.+|...|.+.+.++. ..+++++++|||.+.++....... .....+.. .+....
T Consensus 143 ----------~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~--------~~~~~~~~~~~~~~~ 204 (256)
T PRK08017 143 ----------RGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQ--------TQSDKPVENPGIAAR 204 (256)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhcccc--------hhhccchhhhHHHhh
Confidence 14499999999998776543 358999999999887653221000 00001100 011123
Q ss_pred CcccHHHHHHHHHHhhcCCCCC
Q 020608 225 GSVHFKDVALAHILVYENPSAC 246 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~~ 246 (323)
.+++++|+++++..+++++...
T Consensus 205 ~~~~~~d~a~~~~~~~~~~~~~ 226 (256)
T PRK08017 205 FTLGPEAVVPKLRHALESPKPK 226 (256)
T ss_pred cCCCHHHHHHHHHHHHhCCCCC
Confidence 4789999999999999876553
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=162.79 Aligned_cols=216 Identities=18% Similarity=0.131 Sum_probs=152.7
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CCCE
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GCTG 80 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d~ 80 (323)
|||||++|+||++++++|+++|++|+++.|+..+ ........+...+.+++++.+|++|.++++++++ .+|+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEE-GAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI 79 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 5899999999999999999999999999887522 1112222333334468899999999998887765 4699
Q ss_pred EEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCCCCCCh
Q 020608 81 VFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDE 152 (323)
Q Consensus 81 Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~ 152 (323)
|||+||..... ...+.+...+++|+.++.++++++.. .+.++++++||.+++++.+..
T Consensus 80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~~~-------------- 145 (239)
T TIGR01830 80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAGQ-------------- 145 (239)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCCC--------------
Confidence 99999975321 23355678899999999999998854 345699999998777654321
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccH
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHF 229 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v 229 (323)
..|+.+|.+.+.+++.++.+ .|+.++++||+.+.++..... .......+....+ ...+.++
T Consensus 146 -------~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~ 209 (239)
T TIGR01830 146 -------ANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKL---SEKVKKKILSQIP------LGRFGTP 209 (239)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhc---ChHHHHHHHhcCC------cCCCcCH
Confidence 34999999999888887665 489999999999977643211 1111222222111 1226689
Q ss_pred HHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 230 KDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 230 ~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+|++.+++.++.... ..|+ |++.++
T Consensus 210 ~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 210 EEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 999999998885432 2344 666543
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=165.19 Aligned_cols=197 Identities=14% Similarity=0.084 Sum_probs=145.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhc----CCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVT----GCT 79 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~----~~d 79 (323)
||+|+||||+|+||.+++++|+++|++|++++|+.++... ..+.+.. ...+++++.+|++|.++++++++ .+|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLER--LADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHH--HHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 5799999999999999999999999999999997643222 1222211 13478899999999998887766 469
Q ss_pred EEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCCCCCC
Q 020608 80 GVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDEDCWTD 151 (323)
Q Consensus 80 ~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~ 151 (323)
+|||+||...... +.+++...+++|+.++.++++++.. .+.+++|++||..+..+....
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------------- 145 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRASN------------- 145 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCCCCC-------------
Confidence 9999998643322 2334456789999999999988743 456799999998554433211
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCccc
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVH 228 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 228 (323)
..|+.+|...+.+.+.++.+ .|+++++++||.++++..... . .+ ......
T Consensus 146 --------~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~~-------------~----~~--~~~~~~ 198 (243)
T PRK07102 146 --------YVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAGL-------------K----LP--GPLTAQ 198 (243)
T ss_pred --------cccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhcc-------------C----CC--ccccCC
Confidence 34999999999998888654 489999999999998742110 0 01 112467
Q ss_pred HHHHHHHHHHhhcCC
Q 020608 229 FKDVALAHILVYENP 243 (323)
Q Consensus 229 v~D~a~~~~~~~~~~ 243 (323)
++|+|+.++.+++++
T Consensus 199 ~~~~a~~i~~~~~~~ 213 (243)
T PRK07102 199 PEEVAKDIFRAIEKG 213 (243)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999998865
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=163.08 Aligned_cols=217 Identities=20% Similarity=0.149 Sum_probs=148.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|+||||||+|+||+.+++.|+++|++|+++.++... ........+.....++.++.+|+++.++++++++ .
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAA-AAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR 80 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999876544321 1112222333223478899999999988776654 5
Q ss_pred CCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhhC-C------cCEEEEecccccccCCCCCCCCcccc
Q 020608 78 CTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKAL-G------VKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~-~------~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
+|+|||+||...... ..+++...+++|+.++..+++++.+. . -.++|++||.+++++....
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~------- 153 (248)
T PRK06947 81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNE------- 153 (248)
T ss_pred CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCCC-------
Confidence 899999999753211 23345677999999998888654321 1 2469999998666543210
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
...|+.+|.+.+.+++.++.+. +++++++|||.+.+|....... . ...... .... +..
T Consensus 154 -------------~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-~-~~~~~~-~~~~---~~~ 214 (248)
T PRK06947 154 -------------YVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQ-P-GRAARL-GAQT---PLG 214 (248)
T ss_pred -------------CcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCC-H-HHHHHH-hhcC---CCC
Confidence 0239999999999998887764 8999999999999986432111 1 111111 1111 111
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+..++|+++.++.++.++. ..|.++
T Consensus 215 --~~~~~e~va~~~~~l~~~~~~~~~G~~~ 242 (248)
T PRK06947 215 --RAGEADEVAETIVWLLSDAASYVTGALL 242 (248)
T ss_pred --CCcCHHHHHHHHHHHcCccccCcCCceE
Confidence 14578999999999988654 345554
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=163.01 Aligned_cols=202 Identities=19% Similarity=0.150 Sum_probs=147.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++++++||||+|+||++++++|++.|++|++++|++.+.. .....+... .+++++.+|++|.+++.++++
T Consensus 3 ~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~--~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 3 SLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELE--EAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHH--HHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 455689999999999999999999999999999998753222 222233221 468889999999998877665
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh---CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA---LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+++..... ...+.+...+++|+.++.++++++.+ .+.+++|++||..+..+...
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~---------- 149 (237)
T PRK07326 80 FGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFAG---------- 149 (237)
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCCC----------
Confidence 689999999875432 13344567899999999999988753 24568999999855433221
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
...|+.+|.+.+.+.+.++.+ .|++++++||+.+.++....... . ...
T Consensus 150 -----------~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~~------------~------~~~ 200 (237)
T PRK07326 150 -----------GAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTPS------------E------KDA 200 (237)
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccccc------------h------hhh
Confidence 134999999998888877544 48999999999998764321100 0 001
Q ss_pred CcccHHHHHHHHHHhhcCCCC
Q 020608 225 GSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~ 245 (323)
..+.++|+++.++.++..+..
T Consensus 201 ~~~~~~d~a~~~~~~l~~~~~ 221 (237)
T PRK07326 201 WKIQPEDIAQLVLDLLKMPPR 221 (237)
T ss_pred ccCCHHHHHHHHHHHHhCCcc
Confidence 136789999999999987643
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=164.08 Aligned_cols=208 Identities=19% Similarity=0.149 Sum_probs=144.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
|++++|+||||+|+||++++++|+++|++|++++|+..... ...+.+ ...++.+|+++.++++++++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~--~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGK--AAADEV-----GGLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH--HHHHHc-----CCcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 56799999999999999999999999999999998643221 111222 12578899999998887765
Q ss_pred -CCCEEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 -GCTGVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||..... ...+.+...+++|+.++..+++.+. +.+.+++|++||..+.++...
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~~-------- 149 (255)
T PRK06057 78 GSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSAT-------- 149 (255)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCCC--------
Confidence 579999999875321 1234467889999999988888763 344569999999755553311
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
....|+.+|++.+.+++.++.+ .|+++++++||.+.+|..............+... ..+.
T Consensus 150 ------------~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~----~~~~- 212 (255)
T PRK06057 150 ------------SQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLV----HVPM- 212 (255)
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHh----cCCC-
Confidence 0134999998887777765544 3899999999999998643221101111111111 1121
Q ss_pred CCCcccHHHHHHHHHHhhcCC
Q 020608 223 FMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~ 243 (323)
..+.+++|+++++..++...
T Consensus 213 -~~~~~~~~~a~~~~~l~~~~ 232 (255)
T PRK06057 213 -GRFAEPEEIAAAVAFLASDD 232 (255)
T ss_pred -CCCcCHHHHHHHHHHHhCcc
Confidence 13788999999999888653
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=164.42 Aligned_cols=212 Identities=14% Similarity=0.082 Sum_probs=145.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|++|||||+++||++++++|+++|++|+++.|+..+ ........+.. .+.++.++.+|++|+++++++++
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVE-EANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 577999999999999999999999999999887664321 11122222221 13468899999999998877665
Q ss_pred --CCCEEEEcccCCcc----------CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCC
Q 020608 77 --GCTGVFHLASPCIV----------DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 77 --~~d~Vih~a~~~~~----------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
++|++||||+.... ....+.+...+++|+.+...+.+.+ ++.+.++||++||.++..+.+..
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-- 162 (260)
T PRK08416 85 FDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYIENY-- 162 (260)
T ss_pred cCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCCCCc--
Confidence 57999999985421 0123456678888888877766665 33344699999998544332211
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD 217 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 217 (323)
..|+.+|.+.+.+++.++.++ |++++.+.||.+..+....... ............
T Consensus 163 -------------------~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~-~~~~~~~~~~~~-- 220 (260)
T PRK08416 163 -------------------AGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTN-YEEVKAKTEELS-- 220 (260)
T ss_pred -------------------ccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccC-CHHHHHHHHhcC--
Confidence 349999999999999998875 8999999999998774321111 011111111111
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+. ..+..++|+|.+++.++...
T Consensus 221 --~~--~r~~~p~~va~~~~~l~~~~ 242 (260)
T PRK08416 221 --PL--NRMGQPEDLAGACLFLCSEK 242 (260)
T ss_pred --CC--CCCCCHHHHHHHHHHHcChh
Confidence 11 12568999999999998753
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=165.55 Aligned_cols=214 Identities=19% Similarity=0.127 Sum_probs=148.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
||++|||||+|+||++++++|+++|++|++++|+..+. ..+.. .+++++.+|+++.++++++++ +
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~---~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 72 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDV---EALAA-----AGFTAVQLDVNDGAALARLAEELEAEHGG 72 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHH-----CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999875322 11111 246788999999988877654 5
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh---CCcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA---LGVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
+|+|||+||...... ..+.+...+++|+.++.++++++.. .+.+++|++||..+..+...
T Consensus 73 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------- 139 (274)
T PRK05693 73 LDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVTPF------------- 139 (274)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCCCC-------------
Confidence 799999999753322 3355678899999999999998743 23468999999865544321
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCch----------hHHHHHHHHcCCCC
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNA----------SMLMLLRLLQGCTD 217 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~----------~~~~~~~~~~g~~~ 217 (323)
...|+.+|.+.+.+++.++.+ +|+++++++||.+.++........ .......+....
T Consensus 140 --------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 209 (274)
T PRK05693 140 --------AGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARA-- 209 (274)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHH--
Confidence 134999999999998887765 599999999999988753321100 000000000000
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCCCCccEEE
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPSACGRHLC 251 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~ 251 (323)
.........++|+|+.++.+++++.....+..
T Consensus 210 --~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 241 (274)
T PRK05693 210 --RASQDNPTPAAEFARQLLAAVQQSPRPRLVRL 241 (274)
T ss_pred --HhccCCCCCHHHHHHHHHHHHhCCCCCceEEe
Confidence 00001135689999999999886554333433
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=186.55 Aligned_cols=224 Identities=23% Similarity=0.203 Sum_probs=157.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+||||||+|+||+++++.|+++|++|++++|+..... .....+... .++.++.+|++|.++++++++
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~--~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAE--AAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHH--HHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999999999999998753322 222222221 368889999999998887665
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCc-CEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGV-KRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||...... +.+.+...+++|+.++.++++++. +.+. ++||++||..++.+....
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~~-------- 568 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPNF-------- 568 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCCCc--------
Confidence 6899999999753321 345567889999999999988763 3443 699999998666543321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCcc-CCCCCCCCchhHHHHHHHHcCCCC-----
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVM-GPVIPPTLNASMLMLLRLLQGCTD----- 217 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~-G~~~~~~~~~~~~~~~~~~~g~~~----- 217 (323)
..|+.+|.+.+.+++.++.+. |+++++++|+.+| ++....... ........+...
T Consensus 569 -------------~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~---~~~~~~~~g~~~~~~~~ 632 (681)
T PRK08324 569 -------------GAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEW---IEARAAAYGLSEEELEE 632 (681)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchh---hhhhhhhccCChHHHHH
Confidence 349999999999999988765 6999999999998 554322110 011111111111
Q ss_pred C--ccCcCCCcccHHHHHHHHHHhhc--CCCCCcc-EEEEc
Q 020608 218 T--YENFFMGSVHFKDVALAHILVYE--NPSACGR-HLCVE 253 (323)
Q Consensus 218 ~--~~~~~~~~i~v~D~a~~~~~~~~--~~~~~~~-~~~~~ 253 (323)
. .+.....+++++|+|++++.++. .....|. +++.+
T Consensus 633 ~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdg 673 (681)
T PRK08324 633 FYRARNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDG 673 (681)
T ss_pred HHHhcCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 0 12223458999999999999984 3333444 66653
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=162.97 Aligned_cols=218 Identities=21% Similarity=0.224 Sum_probs=151.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 78 (323)
|+++||||+|+||.+++++|++.|++|+++.|+.... ......+...+.++.++.+|++|.+++.++++ .+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~--~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETA--KETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999998864222 12222333334468889999999998877654 57
Q ss_pred CEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 79 TGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 79 d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
|+|||+|+..... ...+.+...+++|+.++..+++++.. .+ .+++|++||..+.++.+..
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----------- 147 (254)
T TIGR02415 79 DVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPIL----------- 147 (254)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCCC-----------
Confidence 9999999975332 13345678899999999888777632 22 3699999998676654321
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-----c--
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-----Y-- 219 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-----~-- 219 (323)
+.|+.+|.+.+.+++.++.++ ++++++++||.+.++...... ..... ..+.+.. +
T Consensus 148 ----------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~----~~~~~-~~~~~~~~~~~~~~~ 212 (254)
T TIGR02415 148 ----------SAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEID----EETSE-IAGKPIGEGFEEFSS 212 (254)
T ss_pred ----------cchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhh----hhhhh-cccCchHHHHHHHHh
Confidence 449999999999998887664 799999999999877532100 00000 0000000 0
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCCC--CccEEE
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPSA--CGRHLC 251 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~~~~ 251 (323)
......+.+++|+++++..++..... .|.++.
T Consensus 213 ~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~ 246 (254)
T TIGR02415 213 EIALGRPSEPEDVAGLVSFLASEDSDYITGQSIL 246 (254)
T ss_pred hCCCCCCCCHHHHHHHHHhhcccccCCccCcEEE
Confidence 00011267899999999999987543 455554
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-21 Score=162.29 Aligned_cols=210 Identities=17% Similarity=0.139 Sum_probs=146.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|+++||||+|+||++++++|+++|++|+++.|+..... .....+...+.++.++.+|++|+++++++++ +
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLE--EAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999998753322 2222222223468899999999998887654 5
Q ss_pred CCEEEEcccCCcc----CCCCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccccCCC
Q 020608 78 CTGVFHLASPCIV----DKVEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 78 ~d~Vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
+|+|||+||.... ..+.+.+...+++|+.++.++++++.+ .+ .+++|++||..+..+....
T Consensus 79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~---------- 148 (252)
T PRK07677 79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGPGV---------- 148 (252)
T ss_pred ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCCCC----------
Confidence 7999999985422 123445688999999999999999842 22 3689999998543322111
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+.+.++.+ +|++++.++||.+.++...............+.+..+ . .
T Consensus 149 -----------~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~----~--~ 211 (252)
T PRK07677 149 -----------IHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVP----L--G 211 (252)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCC----C--C
Confidence 34999999999999887766 3899999999999864321111011112222222211 1 1
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
.+..++|++.++..++...
T Consensus 212 ~~~~~~~va~~~~~l~~~~ 230 (252)
T PRK07677 212 RLGTPEEIAGLAYFLLSDE 230 (252)
T ss_pred CCCCHHHHHHHHHHHcCcc
Confidence 2568899999999888653
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=162.32 Aligned_cols=217 Identities=17% Similarity=0.192 Sum_probs=152.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+|+||||+|+||++++++|+++|++|+++.|+.+... .....+.....+++++.+|+++.+++.++++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~--~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLK--ELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 56799999999999999999999999999999998753322 1222222223468899999999988887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CC--------cCEEEEecccccccCCCCCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LG--------VKRVVVTSSISSITPSPKWP 139 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--------~~~~v~~SS~~~~~~~~~~~ 139 (323)
++|+|||+|+...... ..+.+..++++|+.++.++++++.. .. .+++|++||..++.+...
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-- 162 (258)
T PRK06949 85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLPQ-- 162 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCCC--
Confidence 5899999999653321 2345778899999999999988642 11 258999999855433221
Q ss_pred CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC
Q 020608 140 ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT 216 (323)
Q Consensus 140 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~ 216 (323)
...|+.+|.+.+.+++.++.+ .++++++++||.+++|....... ......+ ...
T Consensus 163 -------------------~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~--~~~~~~~-~~~- 219 (258)
T PRK06949 163 -------------------IGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWE--TEQGQKL-VSM- 219 (258)
T ss_pred -------------------ccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccC--hHHHHHH-Hhc-
Confidence 144999999999999888766 48999999999999986432110 0111111 111
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+ ...+..++|++.++.+++.... ..|..+
T Consensus 220 --~~--~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i 251 (258)
T PRK06949 220 --LP--RKRVGKPEDLDGLLLLLAADESQFINGAII 251 (258)
T ss_pred --CC--CCCCcCHHHHHHHHHHHhChhhcCCCCcEE
Confidence 11 1125568999999999987433 345554
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-21 Score=163.67 Aligned_cols=206 Identities=19% Similarity=0.120 Sum_probs=150.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++++++||||+|+||.+++++|+++|++|++++|+..... ....++ ....++.++.+|++|.++++++++
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLE--ALAARL-PYPGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHh
Confidence 7788899999999999999999999999999999998743222 222222 223478899999999998877654
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.+|+|||+||...... ..+.+...+++|+.++.++++.+.. .+.+++|++||..+..+....
T Consensus 78 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~-------- 149 (263)
T PRK09072 78 MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYPGY-------- 149 (263)
T ss_pred cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCCCc--------
Confidence 5799999998754321 2345567889999999999999743 334689999998555543321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.++ ++.++++.||.+.++..... .... ... . .
T Consensus 150 -------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~-------~~~~-~~~---~---~ 202 (263)
T PRK09072 150 -------------ASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEA-------VQAL-NRA---L---G 202 (263)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhh-------cccc-ccc---c---c
Confidence 349999999998888887663 79999999999977642210 0000 000 0 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC
Q 020608 224 MGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~ 244 (323)
.....++|+|++++.++++..
T Consensus 203 ~~~~~~~~va~~i~~~~~~~~ 223 (263)
T PRK09072 203 NAMDDPEDVAAAVLQAIEKER 223 (263)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 135689999999999998753
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=162.74 Aligned_cols=204 Identities=19% Similarity=0.169 Sum_probs=147.6
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CCCE
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GCTG 80 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d~ 80 (323)
|+||||+|+||.+++++|+++|++|+++.|+.+. ........+.....++.++.+|++|.+++.++++ .+|+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~ 79 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRS-DAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG 79 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 6899999999999999999999999998876422 2222233333334578899999999998877655 4699
Q ss_pred EEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh-----hCCcCEEEEecccccccCCCCCCCCccccCCCCCC
Q 020608 81 VFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK-----ALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTD 151 (323)
Q Consensus 81 Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~ 151 (323)
+||+||..... ...+++..++++|+.++.++++++. +.+.+++|++||.+++++....
T Consensus 80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~------------- 146 (239)
T TIGR01831 80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRGQ------------- 146 (239)
T ss_pred EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCCCC-------------
Confidence 99999965322 2345677899999999999988752 2345699999998777655321
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCccc
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVH 228 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 228 (323)
..|+.+|.+.+.+.+.++.+ .|++++.++||.+.++...... .......... +. ..+..
T Consensus 147 --------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~~----~~--~~~~~ 208 (239)
T TIGR01831 147 --------VNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEVE----HDLDEALKTV----PM--NRMGQ 208 (239)
T ss_pred --------cchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhhh----HHHHHHHhcC----CC--CCCCC
Confidence 34999999999888887766 3899999999999988643211 1111221111 11 12457
Q ss_pred HHHHHHHHHHhhcCC
Q 020608 229 FKDVALAHILVYENP 243 (323)
Q Consensus 229 v~D~a~~~~~~~~~~ 243 (323)
++|+++++.+++...
T Consensus 209 ~~~va~~~~~l~~~~ 223 (239)
T TIGR01831 209 PAEVASLAGFLMSDG 223 (239)
T ss_pred HHHHHHHHHHHcCch
Confidence 899999999998854
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-21 Score=161.98 Aligned_cols=213 Identities=21% Similarity=0.147 Sum_probs=146.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC--CCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+++||||+|+||++++++|+++|++|++++|+..+... ..+.+... +.++.++.+|++|.++++++++
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLAS--AEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH--HHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999997543222 22222211 2367889999999998877654
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||...... ..+.+...+++|+.+...+++++ ++.+.+++|++||..+..+.+..
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------- 156 (265)
T PRK07062 84 RFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEPHM------- 156 (265)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCCCc-------
Confidence 5799999999753211 33457788899999888887775 33445699999998655433211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc-------hhHHHHHHHHcCC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN-------ASMLMLLRLLQGC 215 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~-------~~~~~~~~~~~g~ 215 (323)
..|+.+|.+.+.+++.++.+ .|++++.++||.+..|....... .............
T Consensus 157 --------------~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (265)
T PRK07062 157 --------------VATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKK 222 (265)
T ss_pred --------------hHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcC
Confidence 33999999998888887766 48999999999998875321000 0001111111101
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
. .+. ..+..++|+|.++..++..
T Consensus 223 ~--~p~--~r~~~p~~va~~~~~L~s~ 245 (265)
T PRK07062 223 G--IPL--GRLGRPDEAARALFFLASP 245 (265)
T ss_pred C--CCc--CCCCCHHHHHHHHHHHhCc
Confidence 0 111 1256889999999998875
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-21 Score=161.05 Aligned_cols=209 Identities=17% Similarity=0.156 Sum_probs=144.5
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC--CCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+++||||+|+||+++++.|+++|++|+++.|+..+. ..+..+.+... .....++.+|++|.++++++++ +
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAG-LDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG 79 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 489999999999999999999999999999873221 11222222211 1234568899999998877654 5
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHH----HHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVK----GTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~----~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+|+|||+|+...... ..+.+...+++|+. ++..++.++++.+.++||++||..++.+....
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~----------- 148 (251)
T PRK07069 80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEPDY----------- 148 (251)
T ss_pred ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCCCC-----------
Confidence 799999999754321 23345677889998 67777777777777899999999666554322
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC-----CccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCCCCCccCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-----GLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|...+.+++.++.+. +++++.++||.+.+|....... ........+.++.+
T Consensus 149 ----------~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------ 212 (251)
T PRK07069 149 ----------TAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVP------ 212 (251)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCC------
Confidence 239999999999998887653 4899999999999986432110 00111112222211
Q ss_pred CCCcccHHHHHHHHHHhhcCC
Q 020608 223 FMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~ 243 (323)
...+.+++|+|.+++.++..+
T Consensus 213 ~~~~~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 213 LGRLGEPDDVAHAVLYLASDE 233 (251)
T ss_pred CCCCcCHHHHHHHHHHHcCcc
Confidence 112568999999999987654
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=162.58 Aligned_cols=212 Identities=17% Similarity=0.103 Sum_probs=149.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCE-EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|+++||||+|+||++++++|+++|++ |+++.|+..+.. .....+...+.++.++.+|+++++++.++++
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE--AQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHH--HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998 999988643222 1222222224467889999999998887665
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCcccc
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+|+..... ...+.+...+++|+.++.++++++.+ .+ .+++|++||..++.+....
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~------- 154 (260)
T PRK06198 82 FGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPFL------- 154 (260)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCCCc-------
Confidence 579999999975321 23345567899999999999988743 22 3589999998655433211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC---C-chhHHHHHHHHcCCCCC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT---L-NASMLMLLRLLQGCTDT 218 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~---~-~~~~~~~~~~~~g~~~~ 218 (323)
+.|+.+|...|.+++.++.++ +++++.++||.++++..... . .....++.......
T Consensus 155 --------------~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--- 217 (260)
T PRK06198 155 --------------AAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQ--- 217 (260)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccC---
Confidence 349999999999999887654 79999999999999863210 0 00011121111111
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
....+++++|+++++..++...
T Consensus 218 ---~~~~~~~~~~~a~~~~~l~~~~ 239 (260)
T PRK06198 218 ---PFGRLLDPDEVARAVAFLLSDE 239 (260)
T ss_pred ---CccCCcCHHHHHHHHHHHcChh
Confidence 1123678999999999998654
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-21 Score=164.56 Aligned_cols=212 Identities=20% Similarity=0.137 Sum_probs=150.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++++++||||+|+||.+++++|+++|++|++++|+..... +..+++.. ...+..+.+|++|.++++++++
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~--~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELA--ALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999998643222 22222321 2356677799999998877654
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+|||+||...... +.+.+.+.+++|+.++.++++++... ..++||++||.+++.+.+..
T Consensus 84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~---------- 153 (296)
T PRK05872 84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAPGM---------- 153 (296)
T ss_pred CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCCCc----------
Confidence 5799999999754321 33456788999999999999997432 23689999998665543321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|...+.+++.++.+ .|+.++++.||.+.++........ ......+....+.. ...
T Consensus 154 -----------~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~~~~~~p----~~~ 217 (296)
T PRK05872 154 -----------AAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADAD-LPAFRELRARLPWP----LRR 217 (296)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcccc-chhHHHHHhhCCCc----ccC
Confidence 34999999999999888754 489999999999988754321111 01111221111111 112
Q ss_pred cccHHHHHHHHHHhhcCC
Q 020608 226 SVHFKDVALAHILVYENP 243 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~ 243 (323)
++.++|+|++++.++.+.
T Consensus 218 ~~~~~~va~~i~~~~~~~ 235 (296)
T PRK05872 218 TTSVEKCAAAFVDGIERR 235 (296)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 568999999999998865
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-21 Score=161.71 Aligned_cols=214 Identities=14% Similarity=0.076 Sum_probs=149.5
Q ss_pred CCCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 2 SKEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 2 ~~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
++++|+++||||+ +.||++++++|++.|++|++..|+.+.....+.++++........++.+|++|.++++++++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence 4678999999986 89999999999999999988877543222223333333222346788999999999887664
Q ss_pred ----CCCEEEEcccCCcc-----C---CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCc
Q 020608 77 ----GCTGVFHLASPCIV-----D---KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~-----~---~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|++|||||.... + .+.+.+...+++|+.++..+++++... .-+++|++||.++..+.+..
T Consensus 83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~---- 158 (258)
T PRK07370 83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRAIPNY---- 158 (258)
T ss_pred HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccCCccc----
Confidence 57999999996421 1 134567889999999999999886432 12699999998554332211
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+.+.++.+. |++++.+.||.+..+....... .......+....
T Consensus 159 -----------------~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~-~~~~~~~~~~~~---- 216 (258)
T PRK07370 159 -----------------NVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGG-ILDMIHHVEEKA---- 216 (258)
T ss_pred -----------------chhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcccc-chhhhhhhhhcC----
Confidence 349999999999999988764 7999999999998874321100 011111111111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+. ..+..++|++.++..++...
T Consensus 217 p~--~r~~~~~dva~~~~fl~s~~ 238 (258)
T PRK07370 217 PL--RRTVTQTEVGNTAAFLLSDL 238 (258)
T ss_pred Cc--CcCCCHHHHHHHHHHHhChh
Confidence 11 12567899999999998753
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-20 Score=158.04 Aligned_cols=219 Identities=15% Similarity=0.120 Sum_probs=149.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+++||||+|+||++++++|+++|++|+++.|+..+ ........+...+.++.++.+|++|.+++.++++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~-~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEE-EANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF 83 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999988875422 1122222333224467889999999998877664
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCC-cCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALG-VKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++||+|+...... ..+.+...+++|+.++..+++++ .+.+ .+++|++||.....+.+..
T Consensus 84 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~~~-------- 155 (261)
T PRK08936 84 GTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWPLF-------- 155 (261)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCCCC--------
Confidence 5799999999753322 23456678999998887666554 4443 3699999997544332211
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+.+.++.++ |+++++++||.+.+|......... .......... +.
T Consensus 156 -------------~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~-~~~~~~~~~~----~~-- 215 (261)
T PRK08936 156 -------------VHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADP-KQRADVESMI----PM-- 215 (261)
T ss_pred -------------cccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCH-HHHHHHHhcC----CC--
Confidence 349999998888888776554 899999999999998643211111 1111111111 11
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
..+..++|+++++..++.... ..|.+.
T Consensus 216 ~~~~~~~~va~~~~~l~s~~~~~~~G~~i 244 (261)
T PRK08936 216 GYIGKPEEIAAVAAWLASSEASYVTGITL 244 (261)
T ss_pred CCCcCHHHHHHHHHHHcCcccCCccCcEE
Confidence 125678999999999987533 244443
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=159.97 Aligned_cols=215 Identities=18% Similarity=0.158 Sum_probs=151.5
Q ss_pred CCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+++||||+ +.||.+++++|+++|++|++..|+. ...+..+++. ..++.++.+|++|+++++++++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~---~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND---RMKKSLQKLV--DEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch---HHHHHHHhhc--cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999 7999999999999999999998862 1222333332 2357889999999998877654
Q ss_pred ---CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|++|||||.... ..+.+.+...+++|+.++..+++++... ..+++|++||.++..+.+..
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~~~~----- 154 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAIPNY----- 154 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccCCcc-----
Confidence 57999999997532 1134567888999999999999887542 13589999998554332211
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+.+.+++.++.+ .|++++.|.||.|-++....... ............ +
T Consensus 155 ----------------~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~-~~~~~~~~~~~~----p 213 (252)
T PRK06079 155 ----------------NVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKG-HKDLLKESDSRT----V 213 (252)
T ss_pred ----------------hhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCC-hHHHHHHHHhcC----c
Confidence 34999999999999998876 48999999999998875322111 111122221111 1
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
. ..+..++|+|.++..++.... ..|+..
T Consensus 214 ~--~r~~~pedva~~~~~l~s~~~~~itG~~i 243 (252)
T PRK06079 214 D--GVGVTIEEVGNTAAFLLSDLSTGVTGDII 243 (252)
T ss_pred c--cCCCCHHHHHHHHHHHhCcccccccccEE
Confidence 1 125689999999999987532 244543
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-21 Score=163.79 Aligned_cols=207 Identities=20% Similarity=0.182 Sum_probs=146.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+++||||+|+||++++++|+++|++|+++.|+..... ..++.++.+|++|.++++++++
T Consensus 5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (266)
T PRK06171 5 LNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ-----------HENYQFVPTDVSSAEEVNHTVAEIIE 73 (266)
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc-----------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999988753321 1257889999999998887665
Q ss_pred ---CCCEEEEcccCCccC-------------CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCC
Q 020608 77 ---GCTGVFHLASPCIVD-------------KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSP 136 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~-------------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~ 136 (323)
.+|+|||+||..... ...+.+...+++|+.++..+++++.. .+.+++|++||..+..+..
T Consensus 74 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 153 (266)
T PRK06171 74 KFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSE 153 (266)
T ss_pred HcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCCC
Confidence 579999999964221 13345677899999999999998753 3346899999986655433
Q ss_pred CCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCcc-CCCCCCCCc---------h
Q 020608 137 KWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVM-GPVIPPTLN---------A 203 (323)
Q Consensus 137 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~-G~~~~~~~~---------~ 203 (323)
.. ..|+.+|.+.+.+++.++.+ .|+++++++||.+. .+....... .
T Consensus 154 ~~---------------------~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~ 212 (266)
T PRK06171 154 GQ---------------------SCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGIT 212 (266)
T ss_pred CC---------------------chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCC
Confidence 21 34999999999999888766 48999999999985 332110000 0
Q ss_pred hHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 204 SMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 204 ~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
............ ..+. ..+..++|+|.++..++...
T Consensus 213 ~~~~~~~~~~~~--~~p~--~r~~~~~eva~~~~fl~s~~ 248 (266)
T PRK06171 213 VEQLRAGYTKTS--TIPL--GRSGKLSEVADLVCYLLSDR 248 (266)
T ss_pred HHHHHhhhcccc--cccC--CCCCCHHHhhhheeeeeccc
Confidence 000111111100 0111 12568899999999998753
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-21 Score=158.98 Aligned_cols=215 Identities=20% Similarity=0.153 Sum_probs=152.9
Q ss_pred EEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CCCEEEEcc
Q 020608 9 CVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GCTGVFHLA 85 (323)
Q Consensus 9 lItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~Vih~a 85 (323)
|||||+|+||++++++|+++|++|+++.|++.... .....+.. ..+++++.+|++|.+++.++++ ++|++||++
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~a 77 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLA--AAARALGG-GAPVRTAALDITDEAAVDAFFAEAGPFDHVVITA 77 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHhc-CCceEEEEccCCCHHHHHHHHHhcCCCCEEEECC
Confidence 69999999999999999999999999998743222 22222221 3468899999999999998887 479999999
Q ss_pred cCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 86 SPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 86 ~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
+...... ..+.+...+++|+.++.+++++....+.+++|++||.+++.+.+.. +.
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~~~~~---------------------~~ 136 (230)
T PRK07041 78 ADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRPSASG---------------------VL 136 (230)
T ss_pred CCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCCCCcc---------------------hH
Confidence 9754321 3456788899999999999996655556799999999665543211 34
Q ss_pred hHHHHHHHHHHHHHHHHhC-CccEEEEcCCCccCCCCCCCCch-hHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHh
Q 020608 162 YPLSKTLAEKAAWEFAKEK-GLDVVVVNPGTVMGPVIPPTLNA-SMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILV 239 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~-~~~~~~~Rp~~v~G~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~ 239 (323)
|+.+|.+.+.+++.++.+. +++++.++||.+-+|........ ....+.......+ . ..+.+++|+|+++..+
T Consensus 137 Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~dva~~~~~l 210 (230)
T PRK07041 137 QGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLP----A--RRVGQPEDVANAILFL 210 (230)
T ss_pred HHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCC----C--CCCcCHHHHHHHHHHH
Confidence 9999999999999988765 78999999999977643211000 0111222222211 1 1245789999999999
Q ss_pred hcCCCCCcc-EEEEc
Q 020608 240 YENPSACGR-HLCVE 253 (323)
Q Consensus 240 ~~~~~~~~~-~~~~~ 253 (323)
+......|+ |++.+
T Consensus 211 ~~~~~~~G~~~~v~g 225 (230)
T PRK07041 211 AANGFTTGSTVLVDG 225 (230)
T ss_pred hcCCCcCCcEEEeCC
Confidence 986644454 66643
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=161.01 Aligned_cols=210 Identities=19% Similarity=0.100 Sum_probs=147.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+++||||+|+||++++++|+++|++|++++|+.+... ....++ ..++.++.+|++|.++++++++
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLA--SLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 457799999999999999999999999999999998753222 111222 2357889999999988877654
Q ss_pred --CCCEEEEcccCCccC----C-CCC----chhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCc
Q 020608 77 --GCTGVFHLASPCIVD----K-VED----PQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~-~~~----~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|++||+||..... . ..+ .+...+++|+.++..+++++... ..+++|++||..++.+....
T Consensus 78 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~---- 153 (263)
T PRK06200 78 FGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGGGG---- 153 (263)
T ss_pred cCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCC----
Confidence 579999999974321 1 112 25678899999999999887432 23589999998665543321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCc--------hhHHHHHHHH
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLN--------ASMLMLLRLL 212 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~--------~~~~~~~~~~ 212 (323)
..|+.+|.+.+.+++.++.+. +++++.+.||.+..+....... .........
T Consensus 154 -----------------~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~- 215 (263)
T PRK06200 154 -----------------PLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMI- 215 (263)
T ss_pred -----------------chhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHh-
Confidence 349999999999999988765 5999999999998875321100 000011111
Q ss_pred cCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 213 QGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 213 ~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
... .+. ..+..++|+|.++..++...
T Consensus 216 ~~~---~p~--~r~~~~~eva~~~~fl~s~~ 241 (263)
T PRK06200 216 AAI---TPL--QFAPQPEDHTGPYVLLASRR 241 (263)
T ss_pred hcC---CCC--CCCCCHHHHhhhhhheeccc
Confidence 111 111 12678999999999998754
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=158.02 Aligned_cols=206 Identities=17% Similarity=0.143 Sum_probs=145.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|++|||||+|+||++++++|+++|++|++++|++.+. .+.... .+++++.+|++|.++++++++ +
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~--~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 74 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPA--IDGLRQ-----AGAQCIQADFSTNAGIMAFIDELKQHTDG 74 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhH--HHHHHH-----cCCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence 58999999999999999999999999999999876422 122222 146788999999988777654 4
Q ss_pred CCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC--cCEEEEecccccccCCCCCCCCccccCC
Q 020608 78 CTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG--VKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 78 ~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
+|++||+||..... ...+.+...+++|+.++..+.+.+.. .+ .+++|++||.....+....
T Consensus 75 id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~--------- 145 (236)
T PRK06483 75 LRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSDKH--------- 145 (236)
T ss_pred ccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCCCC---------
Confidence 79999999964322 13456788999999999888777643 22 3589999997443322211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|.+.+.+++.++.++ ++++++++||.+..+.... ...........+ .+ .
T Consensus 146 ------------~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~-----~~~~~~~~~~~~--~~----~ 202 (236)
T PRK06483 146 ------------IAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDD-----AAYRQKALAKSL--LK----I 202 (236)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCC-----HHHHHHHhccCc--cc----c
Confidence 349999999999999998875 6999999999985432111 111112222111 11 1
Q ss_pred cccHHHHHHHHHHhhcCCCCCccE
Q 020608 226 SVHFKDVALAHILVYENPSACGRH 249 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~~~~~~ 249 (323)
+..++|+|+++..++......|+.
T Consensus 203 ~~~~~~va~~~~~l~~~~~~~G~~ 226 (236)
T PRK06483 203 EPGEEEIIDLVDYLLTSCYVTGRS 226 (236)
T ss_pred CCCHHHHHHHHHHHhcCCCcCCcE
Confidence 447899999999999754445553
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=162.51 Aligned_cols=218 Identities=12% Similarity=0.119 Sum_probs=150.1
Q ss_pred CCCCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHH-hhccCCCCCeEEEEccCCCHhHHHHHhc-
Q 020608 1 MSKEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHL-KALEGADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 1 m~~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
|.|++|+++||||+ +.||++++++|+++|++|++..|+....+..+.. ..+ +.. .++.+|++|.++++++++
T Consensus 1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~---~~~-~~~~~Dv~d~~~v~~~~~~ 76 (274)
T PRK08415 1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQEL---GSD-YVYELDVSKPEHFKSLAES 76 (274)
T ss_pred CccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc---CCc-eEEEecCCCHHHHHHHHHH
Confidence 78899999999997 7999999999999999999988864211221211 111 223 578999999998887654
Q ss_pred ------CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCC
Q 020608 77 ------GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
++|++|||||.... ..+.+.+...+++|+.++..+.+++... .-+++|++||.++..+.+..
T Consensus 77 i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~~~~-- 154 (274)
T PRK08415 77 LKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKYVPHY-- 154 (274)
T ss_pred HHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccCCCcc--
Confidence 57999999996421 1134567889999999999999887432 12589999998554332211
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD 217 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 217 (323)
..|+.||.+.+.+.+.++.+. |++++.+.||.+.++....... ... ........
T Consensus 155 -------------------~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~-~~~-~~~~~~~~-- 211 (274)
T PRK08415 155 -------------------NVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGD-FRM-ILKWNEIN-- 211 (274)
T ss_pred -------------------hhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccch-hhH-Hhhhhhhh--
Confidence 349999999999999988764 8999999999998864221100 000 00100000
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+.+ .+..++|+|.++..++.... ..|+..
T Consensus 212 -~pl~--r~~~pedva~~v~fL~s~~~~~itG~~i 243 (274)
T PRK08415 212 -APLK--KNVSIEEVGNSGMYLLSDLSSGVTGEIH 243 (274)
T ss_pred -Cchh--ccCCHHHHHHHHHHHhhhhhhcccccEE
Confidence 1111 15679999999999987532 345544
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=159.59 Aligned_cols=199 Identities=16% Similarity=0.159 Sum_probs=140.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCc-HHHHHHHhhccCC-CCCeEEEEccCCCHhHHHHHhc----
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSD-ERETAHLKALEGA-DTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
..++|+||||+|+||++++++|+++| ++|++++|+.+. .. +..+++... ..+++++.+|++|.++++++++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~--~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRD--AAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHH--HHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 35789999999999999999999995 899999998653 22 122222221 2368899999999887665543
Q ss_pred --CCCEEEEcccCCccCC-CCCc---hhhhhhHHHHHHHHH----HHHHhhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK-VEDP---QNQLLNPAVKGTVNV----LTAAKALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~-~~~~---~~~~~~~n~~~~~~l----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++||++|...... ...+ ..+.+++|+.++..+ +..+++.+.+++|++||..+..+...
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~~~~--------- 155 (253)
T PRK07904 85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERVRRS--------- 155 (253)
T ss_pred cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCCCCC---------
Confidence 6899999998753211 1111 224689999988874 45556666789999999854332211
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
...|+.||++...+.+.++.+ +++++++++||.+..+..... ...
T Consensus 156 ------------~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~~------------~~~-------- 203 (253)
T PRK07904 156 ------------NFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAHA------------KEA-------- 203 (253)
T ss_pred ------------CcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhccC------------CCC--------
Confidence 134999999998777666544 589999999999988642210 000
Q ss_pred CCcccHHHHHHHHHHhhcCCCC
Q 020608 224 MGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
...+.++|+|+.++.+++++..
T Consensus 204 ~~~~~~~~~A~~i~~~~~~~~~ 225 (253)
T PRK07904 204 PLTVDKEDVAKLAVTAVAKGKE 225 (253)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC
Confidence 1135799999999999986533
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=162.78 Aligned_cols=216 Identities=19% Similarity=0.134 Sum_probs=150.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC-------cHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-------DERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
+++|+++||||+++||++++++|++.|++|+++.|+.+ ........+.+...+.++.++.+|++|.+++++++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 56789999999999999999999999999999887641 12222223333333446788999999998877765
Q ss_pred c-------CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC------cCEEEEecccccccC
Q 020608 76 T-------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG------VKRVVVTSSISSITP 134 (323)
Q Consensus 76 ~-------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~------~~~~v~~SS~~~~~~ 134 (323)
+ ++|++|||||..... ...+.+...+++|+.++..+++++.. .. .++||++||.++..+
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~ 163 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQG 163 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcC
Confidence 4 579999999975321 23456788999999999999888632 11 248999999866655
Q ss_pred CCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHH
Q 020608 135 SPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRL 211 (323)
Q Consensus 135 ~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~ 211 (323)
.... ..|+.+|.+.+.+.+.++.+ +|++++.|.|+ +..+... ......
T Consensus 164 ~~~~---------------------~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~-------~~~~~~ 214 (286)
T PRK07791 164 SVGQ---------------------GNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTE-------TVFAEM 214 (286)
T ss_pred CCCc---------------------hhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcch-------hhHHHH
Confidence 4322 34999999999999888776 48999999998 5443211 011111
Q ss_pred HcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 212 LQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 212 ~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
.... +...+.+..++|+|.+++.++.... ..|+++.
T Consensus 215 ~~~~----~~~~~~~~~pedva~~~~~L~s~~~~~itG~~i~ 252 (286)
T PRK07791 215 MAKP----EEGEFDAMAPENVSPLVVWLGSAESRDVTGKVFE 252 (286)
T ss_pred HhcC----cccccCCCCHHHHHHHHHHHhCchhcCCCCcEEE
Confidence 1111 1112235679999999999987532 3566543
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-20 Score=157.10 Aligned_cols=210 Identities=19% Similarity=0.117 Sum_probs=149.5
Q ss_pred CCCceEEEecccc-HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-C-CCCeEEEEccCCCHhHHHHHhc---
Q 020608 3 KEAEVVCVTGGSG-CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-A-DTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 3 ~~~~~vlItGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~-~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
+++|+++||||+| .||+++++.|+++|++|++++|+..+... ..+.+.. . ..++.++.+|+++.++++++++
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGE--TADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHH--HHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 3578999999997 79999999999999999998886533222 2222221 1 1357889999999988887664
Q ss_pred ----CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCcc
Q 020608 77 ----GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
.+|+|||+||...... ..+.+...+++|+.++..+++++.. .+ .+++|++||..+..+....
T Consensus 93 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~----- 167 (262)
T PRK07831 93 ERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQHGQ----- 167 (262)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCC-----
Confidence 5799999999643211 2345777889999999998888642 22 4689999987554332211
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+.+.+++.++.+ +|+++++++||.+.+|...... .......+....+ .
T Consensus 168 ----------------~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~--~~~~~~~~~~~~~--~- 226 (262)
T PRK07831 168 ----------------AHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT--SAELLDELAAREA--F- 226 (262)
T ss_pred ----------------cchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc--CHHHHHHHHhcCC--C-
Confidence 34999999999999999876 5899999999999998643211 1122222222221 1
Q ss_pred CcCCCcccHHHHHHHHHHhhcCC
Q 020608 221 NFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
..+..++|+|++++.++...
T Consensus 227 ---~r~~~p~~va~~~~~l~s~~ 246 (262)
T PRK07831 227 ---GRAAEPWEVANVIAFLASDY 246 (262)
T ss_pred ---CCCcCHHHHHHHHHHHcCch
Confidence 12567899999999998754
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=165.97 Aligned_cols=184 Identities=20% Similarity=0.137 Sum_probs=135.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+++||||||+||.+++++|+++|++|++++|+.++.. +..+++.. ...++.++.+|+.|.+++.++++
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~--~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGE--AAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999754322 22222221 12368899999999998887654
Q ss_pred ---CCCEEEEcccCCccC---CCCCchhhhhhHHHHHHHHHHHHHhh---CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 ---GCTGVFHLASPCIVD---KVEDPQNQLLNPAVKGTVNVLTAAKA---LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|++||+||....+ .+.+.++..+.+|+.+...+.+.+.. .+..++|++||.+...+... ...+.++
T Consensus 90 ~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~---~~~~~~~ 166 (313)
T PRK05854 90 EGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAIN---WDDLNWE 166 (313)
T ss_pred hCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcC---ccccccc
Confidence 489999999976432 24567788999999998888887642 23469999999866554322 1122222
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh-----CCccEEEEcCCCccCCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-----KGLDVVVVNPGTVMGPVI 197 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~Rp~~v~G~~~ 197 (323)
....+ ...|+.||.+.+.+++.++++ .|+.++.+.||.+.++..
T Consensus 167 ~~~~~------~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~ 215 (313)
T PRK05854 167 RSYAG------MRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLL 215 (313)
T ss_pred ccCcc------hhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCcc
Confidence 22222 156999999999999988753 379999999999987653
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=155.58 Aligned_cols=207 Identities=19% Similarity=0.194 Sum_probs=145.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 78 (323)
|++|||||+|+||++++++|+++|++|+++.|+. .....+..........++.++.+|++|++++.++++ .+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPN-EERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI 79 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999988832 222212222222223468899999999988777654 57
Q ss_pred CEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 79 TGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 79 d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
|+|||+||..... ...+.+...+++|+.++..+++.+ ++.+.+++|++||..+..+....
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~------------ 147 (242)
T TIGR01829 80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQFGQ------------ 147 (242)
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCc------------
Confidence 9999999865321 133456778899999988866654 45566799999998555433211
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSV 227 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 227 (323)
..|+.+|...+.+++.++.+ .+++++.++|+.+.+|...... ...+..+..+.+. ..+.
T Consensus 148 ---------~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~---~~~~~~~~~~~~~------~~~~ 209 (242)
T TIGR01829 148 ---------TNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMR---EDVLNSIVAQIPV------GRLG 209 (242)
T ss_pred ---------chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccc---hHHHHHHHhcCCC------CCCc
Confidence 33999999999888887655 3899999999999988643211 1122222222211 1245
Q ss_pred cHHHHHHHHHHhhcCC
Q 020608 228 HFKDVALAHILVYENP 243 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~ 243 (323)
.++|+++++..++..+
T Consensus 210 ~~~~~a~~~~~l~~~~ 225 (242)
T TIGR01829 210 RPEEIAAAVAFLASEE 225 (242)
T ss_pred CHHHHHHHHHHHcCch
Confidence 6899999998887653
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=162.63 Aligned_cols=206 Identities=15% Similarity=0.076 Sum_probs=144.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|+++||||+|+||++++++|+++|++|++.+|+... ......+.+...+.++.++.+|++|.++++++++
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~-~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASAL-DASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchh-HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999998875322 1222233333334578899999999988887664
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC-----------CcCEEEEecccccccCCCCCCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL-----------GVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~-----------~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++..+ ..+++|++||.++..+....
T Consensus 88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-- 165 (306)
T PRK07792 88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVGQ-- 165 (306)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCCCC--
Confidence 589999999975432 234567788999999999999886421 12589999998655443321
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD 217 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 217 (323)
..|+.+|.+.+.+++.++.+ +|++++++.|+. ..+.... .+ ...+.
T Consensus 166 -------------------~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~~~~~-------~~----~~~~~ 214 (306)
T PRK07792 166 -------------------ANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTAMTAD-------VF----GDAPD 214 (306)
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCchhhh-------hc----cccch
Confidence 23999999999999888765 589999999973 2221100 00 00000
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcC
Q 020608 218 TYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
. ......+++++|++.++..++..
T Consensus 215 ~-~~~~~~~~~pe~va~~v~~L~s~ 238 (306)
T PRK07792 215 V-EAGGIDPLSPEHVVPLVQFLASP 238 (306)
T ss_pred h-hhhccCCCCHHHHHHHHHHHcCc
Confidence 0 00112346899999999988864
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=157.89 Aligned_cols=212 Identities=16% Similarity=0.090 Sum_probs=146.7
Q ss_pred CCCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHH-hhccCCCCCeEEEEccCCCHhHHHHHhc--
Q 020608 2 SKEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHL-KALEGADTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 2 ~~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
++++|+++||||+ +.||.+++++|+++|++|++..|+.......+.+ .++. ..++.++.+|++|.++++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHHHH
Confidence 3567899999997 8999999999999999999988754332222222 2221 2467889999999998887664
Q ss_pred -----CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCC
Q 020608 77 -----GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPAD 141 (323)
Q Consensus 77 -----~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~ 141 (323)
++|++|||||.... ..+.+.+...+++|+.+...+++++... ...++|++||..+..+.+..
T Consensus 82 ~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~--- 158 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVVQNY--- 158 (257)
T ss_pred HHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCCCCC---
Confidence 57999999986421 1133456678899999998888876532 12599999998554332211
Q ss_pred ccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC
Q 020608 142 KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT 218 (323)
Q Consensus 142 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 218 (323)
..|+.+|.+.+.+.+.++.+. |++++.|.||.+.++....... ...........
T Consensus 159 ------------------~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~---- 215 (257)
T PRK08594 159 ------------------NVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGG-FNSILKEIEER---- 215 (257)
T ss_pred ------------------chhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhcc-ccHHHHHHhhc----
Confidence 349999999999999888764 8999999999998874211000 00111111111
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
.+. ..+..++|+|++++.++...
T Consensus 216 ~p~--~r~~~p~~va~~~~~l~s~~ 238 (257)
T PRK08594 216 APL--RRTTTQEEVGDTAAFLFSDL 238 (257)
T ss_pred CCc--cccCCHHHHHHHHHHHcCcc
Confidence 111 12567999999999998754
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=159.64 Aligned_cols=214 Identities=18% Similarity=0.104 Sum_probs=143.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC------ 78 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------ 78 (323)
||+++||||+|+||++++++|+++|++|++++|+..+ .. ..+.. ....+++++.+|++|.++++++++.+
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~-~~-~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENK-EL-TKLAE--QYNSNLTFHSLDLQDVHELETNFNEILSSIQE 76 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchH-HH-HHHHh--ccCCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence 4799999999999999999999999999999987522 11 11111 12346889999999999988777522
Q ss_pred -----CEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHH----hhC-CcCEEEEecccccccCCCCCCCCcc
Q 020608 79 -----TGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAA----KAL-GVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 79 -----d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~-~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
.++||+||.... ..+.+.+...+++|+.++..+++.+ ++. +.++||++||..+..+...
T Consensus 77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------ 150 (251)
T PRK06924 77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYFG------ 150 (251)
T ss_pred ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCCCC------
Confidence 278999987432 1234556778889999877766665 332 3468999999854332221
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh-----CCccEEEEcCCCccCCCCCCC---CchhHHHHHHHHcCC
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-----KGLDVVVVNPGTVMGPVIPPT---LNASMLMLLRLLQGC 215 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~Rp~~v~G~~~~~~---~~~~~~~~~~~~~g~ 215 (323)
...|+.+|.+.+.+++.++.+ .+++++.++||.+-++..... ...............
T Consensus 151 ---------------~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 215 (251)
T PRK06924 151 ---------------WSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLK 215 (251)
T ss_pred ---------------cHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHHh
Confidence 144999999999999988765 379999999999977642110 000000011111100
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcC-CCCCccE
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYEN-PSACGRH 249 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~-~~~~~~~ 249 (323)
+.+ .+..++|+|++++.++.. ....|++
T Consensus 216 ----~~~--~~~~~~dva~~~~~l~~~~~~~~G~~ 244 (251)
T PRK06924 216 ----EEG--KLLSPEYVAKALRNLLETEDFPNGEV 244 (251)
T ss_pred ----hcC--CcCCHHHHHHHHHHHHhcccCCCCCE
Confidence 111 257899999999999986 3344553
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-21 Score=159.92 Aligned_cols=164 Identities=21% Similarity=0.193 Sum_probs=124.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------- 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 76 (323)
||++|||||||+||++++++|+++|++|++++|+..+.. . ...+.++.++.+|++|.++++++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~----~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 73 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSL----A---AAAGERLAEVELDLSDAAAAAAWLAGDLLAAFV 73 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhh----h---hccCCeEEEEEeccCCHHHHHHHHHHHHHHHhc
Confidence 469999999999999999999999999999998754211 1 1113468889999999988877432
Q ss_pred ---CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
.+|++||+|+...... +.+.+...+++|+.++..+++.+. +.+.+++|++||..++.+....
T Consensus 74 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~------ 147 (243)
T PRK07023 74 DGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYAGW------ 147 (243)
T ss_pred cCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCCCc------
Confidence 4689999999753211 234567889999999777766653 3345799999998554433211
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh--CCccEEEEcCCCccCCC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE--KGLDVVVVNPGTVMGPV 196 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~Rp~~v~G~~ 196 (323)
..|+.+|.+.|.+++.++.+ .++++++++||.+-+|.
T Consensus 148 ---------------~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~ 186 (243)
T PRK07023 148 ---------------SVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTGM 186 (243)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccHH
Confidence 34999999999999988865 48999999999997763
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=159.08 Aligned_cols=217 Identities=12% Similarity=0.059 Sum_probs=148.3
Q ss_pred CCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++|++|||||++ .||++++++|+++|++|++..|+...... .+.+........++.+|++|.++++++++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~---~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR---VKPLAESLGSDFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH---HHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 5678999999997 99999999999999999998876422221 22221101123568999999998887654
Q ss_pred ---CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|++|||||.... ..+.+.+...+++|+.++.++++++... .-+++|++||.++..+.+..
T Consensus 82 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~~~~~----- 156 (271)
T PRK06505 82 KWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRVMPNY----- 156 (271)
T ss_pred HhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccccCCcc-----
Confidence 57999999997531 1234567888999999999998876432 12589999998554432211
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+.+.+.+.++.+. |++++.|.||.+-++....... ............ +
T Consensus 157 ----------------~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~-~~~~~~~~~~~~----p 215 (271)
T PRK06505 157 ----------------NVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGD-ARAIFSYQQRNS----P 215 (271)
T ss_pred ----------------chhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcc-hHHHHHHHhhcC----C
Confidence 349999999999999988774 8999999999998875321111 111111111111 1
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+ .+..++|+|.+++.++.... ..|+..
T Consensus 216 ~~--r~~~peeva~~~~fL~s~~~~~itG~~i 245 (271)
T PRK06505 216 LR--RTVTIDEVGGSALYLLSDLSSGVTGEIH 245 (271)
T ss_pred cc--ccCCHHHHHHHHHHHhCccccccCceEE
Confidence 11 14578999999999987533 245543
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-21 Score=162.20 Aligned_cols=211 Identities=19% Similarity=0.139 Sum_probs=148.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|+++||||+|+||++++++|+++|++|++++|+.+... .+.. ..+.++.++.+|++|.+++.++++
T Consensus 1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQ---ELEA--AHGDAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHh--hcCCceEEEEeccCCHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999988653222 1211 113367889999999888776654
Q ss_pred ---CCCEEEEcccCCccC----C-CC----CchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCC
Q 020608 77 ---GCTGVFHLASPCIVD----K-VE----DPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPAD 141 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~-~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 141 (323)
++|++||+||..... . .. +.+...+++|+.++.++++++... ..+++|++||..++.+....
T Consensus 76 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~--- 152 (262)
T TIGR03325 76 AFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNGGG--- 152 (262)
T ss_pred HhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCCCCC---
Confidence 579999999864211 1 11 246788999999999999998542 22579999988665543221
Q ss_pred ccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCc---hh---HHHHHHHHc
Q 020608 142 KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLN---AS---MLMLLRLLQ 213 (323)
Q Consensus 142 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~---~~---~~~~~~~~~ 213 (323)
..|+.+|.+.+.+++.++.+. .++++.+.||.+..|....... .. ........+
T Consensus 153 ------------------~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (262)
T TIGR03325 153 ------------------PLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLK 214 (262)
T ss_pred ------------------chhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhh
Confidence 349999999999999998875 4899999999999875321100 00 000011111
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.. .+. ..+..++|+|.++..++..
T Consensus 215 ~~---~p~--~r~~~p~eva~~~~~l~s~ 238 (262)
T TIGR03325 215 SV---LPI--GRMPDAEEYTGAYVFFATR 238 (262)
T ss_pred hc---CCC--CCCCChHHhhhheeeeecC
Confidence 11 111 1256799999999998875
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-20 Score=155.72 Aligned_cols=218 Identities=13% Similarity=0.076 Sum_probs=150.3
Q ss_pred CCCCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHH-hhccCCCCCeEEEEccCCCHhHHHHHhc-
Q 020608 1 MSKEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHL-KALEGADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 1 m~~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
|++++|+++||||+ +.||.+++++|+++|++|++..|+....+..+.+ +++ ....++.+|++|.++++++++
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL----DAPIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh----ccceEEecCcCCHHHHHHHHHH
Confidence 35678999999998 5999999999999999999998875322212222 121 234678999999998887654
Q ss_pred ------CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCC
Q 020608 77 ------GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
++|++|||||.... ..+.+.+...+++|+.++..+++++... .-+++|++||.++..+....
T Consensus 82 ~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~~~~~-- 159 (258)
T PRK07533 82 IAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKVVENY-- 159 (258)
T ss_pred HHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccCCccc--
Confidence 57999999997431 1134567889999999999999987432 12589999997543322111
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD 217 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 217 (323)
..|+.+|.+.+.+.+.++.+ +|++++.+.||.+.++....... ............
T Consensus 160 -------------------~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~-- 217 (258)
T PRK07533 160 -------------------NLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDD-FDALLEDAAERA-- 217 (258)
T ss_pred -------------------hhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCC-cHHHHHHHHhcC--
Confidence 34999999999999888766 48999999999998875321111 111112222211
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
+. ..+..++|+|.+++.++.... ..|+..
T Consensus 218 --p~--~r~~~p~dva~~~~~L~s~~~~~itG~~i 248 (258)
T PRK07533 218 --PL--RRLVDIDDVGAVAAFLASDAARRLTGNTL 248 (258)
T ss_pred --Cc--CCCCCHHHHHHHHHHHhChhhccccCcEE
Confidence 11 125689999999999987532 345543
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-20 Score=155.68 Aligned_cols=216 Identities=17% Similarity=0.090 Sum_probs=148.5
Q ss_pred CCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCC---------cHHHHHHHhhccCCCCCeEEEEccCCCHhHH
Q 020608 3 KEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLS---------DERETAHLKALEGADTRLRLFQIDLLDYDAI 71 (323)
Q Consensus 3 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 71 (323)
+++|+++||||+| +||++++++|+++|++|+++.|... .....+..+.+...+.++.++.+|++|.+++
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i 83 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP 83 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 5689999999995 8999999999999999998754311 1111122223333345788899999999988
Q ss_pred HHHhc-------CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCC
Q 020608 72 AAAVT-------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSP 136 (323)
Q Consensus 72 ~~~~~-------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~ 136 (323)
+++++ .+|+|||+||..... .+.+.+...+++|+.+...+..++ ++.+.++||++||..+..+..
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 163 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQGPMV 163 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCCCCC
Confidence 87765 479999999975321 134457778999999999886554 333346999999985543322
Q ss_pred CCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHc
Q 020608 137 KWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQ 213 (323)
Q Consensus 137 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~ 213 (323)
.+ ..|+.+|.+.+.+.+.++.+ ++++++.++||.+-++.... .....+..
T Consensus 164 ~~---------------------~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~------~~~~~~~~ 216 (256)
T PRK12859 164 GE---------------------LAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE------EIKQGLLP 216 (256)
T ss_pred Cc---------------------hHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH------HHHHHHHh
Confidence 11 34999999999998888766 48999999999998764321 11111111
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
.. +. ..+..++|+|+++..++.... ..|++..
T Consensus 217 ~~----~~--~~~~~~~d~a~~~~~l~s~~~~~~~G~~i~ 250 (256)
T PRK12859 217 MF----PF--GRIGEPKDAARLIKFLASEEAEWITGQIIH 250 (256)
T ss_pred cC----CC--CCCcCHHHHHHHHHHHhCccccCccCcEEE
Confidence 11 11 124578999999999886532 2455443
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=158.37 Aligned_cols=220 Identities=17% Similarity=0.135 Sum_probs=151.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhc---C
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVT---G 77 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---~ 77 (323)
.+++|+++||||+|+||.++++.|+++|++|++++|++.+.. ...+.+.. .+.++.++.+|++|.+++.++++ +
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~ 81 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALE--ALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGD 81 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH--HHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCC
Confidence 357799999999999999999999999999999998753222 22222221 13467889999999998887765 5
Q ss_pred CCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 78 CTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 78 ~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+|++||+||..... ...+.+...+++|+.+...+++++ ++.+.+++|++||.....+....
T Consensus 82 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~----------- 150 (259)
T PRK06125 82 IDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPDADY----------- 150 (259)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCCCCc-----------
Confidence 89999999864321 134567888999999999999886 33344689999997544322211
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc-------hhHHHHHHHHcCCCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN-------ASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~-------~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.+ .|++++.++||.+.+|....... ........+... .
T Consensus 151 ----------~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 216 (259)
T PRK06125 151 ----------ICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAG----L 216 (259)
T ss_pred ----------hHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhcc----C
Confidence 23899999999999988765 48999999999998874210000 000001111111 1
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
+. ..+..++|+|++++.++.... ..|..+
T Consensus 217 ~~--~~~~~~~~va~~~~~l~~~~~~~~~G~~i 247 (259)
T PRK06125 217 PL--GRPATPEEVADLVAFLASPRSGYTSGTVV 247 (259)
T ss_pred Cc--CCCcCHHHHHHHHHHHcCchhccccCceE
Confidence 11 125689999999999987432 245543
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=158.76 Aligned_cols=171 Identities=23% Similarity=0.233 Sum_probs=131.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHH-HHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERET-AHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+.+|+|+|||||.+||.+++.+|+++|.+++.+.|+..+.+.. +.+++..... ++..+++|++|.++++++++
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999988888876655544 4444433222 69999999999999887653
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++|||||...... ...+....+++|+.|+..+.+++ ++.+-++||.+||.++..+.+-.
T Consensus 89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~-------- 160 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFR-------- 160 (282)
T ss_pred cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcc--------
Confidence 7899999999875322 33455679999999999999997 34445799999999766655421
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccE--E--EEcCCCccCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDV--V--VVNPGTVMGP 195 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~--~--~~Rp~~v~G~ 195 (323)
..|..||.+.+.+.+.+..+..-.. + ++-||.|-..
T Consensus 161 -------------~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~Te 200 (282)
T KOG1205|consen 161 -------------SIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIETE 200 (282)
T ss_pred -------------cccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceeec
Confidence 2499999999999999988862211 1 4778888665
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-20 Score=154.56 Aligned_cols=200 Identities=16% Similarity=0.088 Sum_probs=141.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCC--HhHHHHHh----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLD--YDAIAAAV---- 75 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~--~~~~~~~~---- 75 (323)
|++|+++||||+|+||++++++|+++|++|++++|+..... ....++.. ......++.+|+.+ .+++.+++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLE--KVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHH--HHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 56789999999999999999999999999999999864322 22222211 12356778899875 33444332
Q ss_pred ----cCCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCc
Q 020608 76 ----TGCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 76 ----~~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
..+|+|||+||.... ....+++...+++|+.++.++++++.+ .+.+++|++||..+..+....
T Consensus 82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~---- 157 (239)
T PRK08703 82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYW---- 157 (239)
T ss_pred HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCCCCc----
Confidence 367999999996421 113345667899999999999888743 345699999997544332211
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC----CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK----GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT 218 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 218 (323)
..|+.+|.+.+.+++.++.+. ++++++++||.+++|...... .+.
T Consensus 158 -----------------~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~-----------~~~--- 206 (239)
T PRK08703 158 -----------------GGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSH-----------PGE--- 206 (239)
T ss_pred -----------------cchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccC-----------CCC---
Confidence 349999999999999988774 599999999999998632110 010
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcC
Q 020608 219 YENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
....+...+|++.++..++..
T Consensus 207 ---~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 207 ---AKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred ---CccccCCHHHHHHHHHHHhCc
Confidence 011245789999999999974
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=174.56 Aligned_cols=219 Identities=18% Similarity=0.147 Sum_probs=155.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
.+|++|||||+|+||.+++++|+++|++|++++|+...... ..+.+ ..++..+.+|++|.++++++++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~--~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKK--LAEAL---GDEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH--HHHHh---CCceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999986432221 11222 2356778999999998887765
Q ss_pred CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 77 GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 77 ~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
.+|+||||||.... ..+.+.+...+++|+.++.++++++... +.++||++||.++..+....
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~----------- 411 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALPPR----------- 411 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCCCC-----------
Confidence 47999999997521 1234567889999999999999997553 23699999999766544321
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
..|+.+|...+.+++.++.++ |+++++++||.+.+|...............+.+..+ . ..+
T Consensus 412 ----------~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~----~--~~~ 475 (520)
T PRK06484 412 ----------NAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIP----L--GRL 475 (520)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCC----C--CCC
Confidence 349999999999999988764 899999999999988543211100111122222211 1 125
Q ss_pred ccHHHHHHHHHHhhcCCC--CCccE-EEEcC
Q 020608 227 VHFKDVALAHILVYENPS--ACGRH-LCVEA 254 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~--~~~~~-~~~~~ 254 (323)
..++|+|++++.++.... ..|+. .+.+.
T Consensus 476 ~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg 506 (520)
T PRK06484 476 GDPEEVAEAIAFLASPAASYVNGATLTVDGG 506 (520)
T ss_pred cCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 689999999999987532 34553 34433
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-20 Score=155.78 Aligned_cols=217 Identities=13% Similarity=0.084 Sum_probs=146.9
Q ss_pred CCCceEEEecc--ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGG--SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+++|||| ++.||++++++|+++|++|++..|..... +.++++.........+.+|++|+++++++++
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLE---ERVRKMAAELDSELVFRCDVASDDEINQVFADLGK 80 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHH---HHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHH
Confidence 56789999997 67999999999999999999887652222 2222332211234578999999999887764
Q ss_pred ---CCCEEEEcccCCccC---------CCCCchhhhhhHHHHHHHHHHHHHhh---CCcCEEEEecccccccCCCCCCCC
Q 020608 77 ---GCTGVFHLASPCIVD---------KVEDPQNQLLNPAVKGTVNVLTAAKA---LGVKRVVVTSSISSITPSPKWPAD 141 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~ 141 (323)
++|++|||||..... ...+.+...+++|+.+...+.+++.. .+.+++|++||.++..+.+..
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~~~~--- 157 (261)
T PRK08690 81 HWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNY--- 157 (261)
T ss_pred HhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCCCCc---
Confidence 589999999975321 12234667788999999888877532 122589999998655433221
Q ss_pred ccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC
Q 020608 142 KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT 218 (323)
Q Consensus 142 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 218 (323)
..|+.+|.+.+.+++.++.+ +|++++.+.||.+..+...... ........+....
T Consensus 158 ------------------~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~-~~~~~~~~~~~~~--- 215 (261)
T PRK08690 158 ------------------NVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIA-DFGKLLGHVAAHN--- 215 (261)
T ss_pred ------------------ccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCC-chHHHHHHHhhcC---
Confidence 34999999999998888755 4899999999999887432111 0111111111111
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
+. ..+..++|+|+++..++.... ..|+..
T Consensus 216 -p~--~r~~~peevA~~v~~l~s~~~~~~tG~~i 246 (261)
T PRK08690 216 -PL--RRNVTIEEVGNTAAFLLSDLSSGITGEIT 246 (261)
T ss_pred -CC--CCCCCHHHHHHHHHHHhCcccCCcceeEE
Confidence 11 125689999999999998543 244433
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-20 Score=157.25 Aligned_cols=208 Identities=18% Similarity=0.159 Sum_probs=142.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCC-CeEEEEccCCCHhHHHHHhc-------C
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADT-RLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
|+++||||+|+||.+++++|+++|++|++++|+.+... ...+++...+. ...++.+|++|.++++++++ +
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLA--QTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 57999999999999999999999999999988653221 22222222122 34567899999988776654 4
Q ss_pred CCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----C-CcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 78 CTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----L-GVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 78 ~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
+|+|||+||..... ...+.+...+++|+.++.++++++.. . ..+++|++||..+..+.+..
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~---------- 148 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALPWH---------- 148 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCCCC----------
Confidence 79999999865321 23455678899999999999999732 2 24699999998554333211
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCC----chhHHHHHHHHcCCCCCccC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTL----NASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~----~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+.+.++.+ +++++++++||.+.+|...... .............
T Consensus 149 -----------~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------- 210 (272)
T PRK07832 149 -----------AAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDR------- 210 (272)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHh-------
Confidence 34999999888877776644 5899999999999998643210 0000000110000
Q ss_pred cCCCcccHHHHHHHHHHhhcCC
Q 020608 222 FFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
.....+.++|+|.+++.++.++
T Consensus 211 ~~~~~~~~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 211 FRGHAVTPEKAAEKILAGVEKN 232 (272)
T ss_pred cccCCCCHHHHHHHHHHHHhcC
Confidence 0112478999999999999643
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=178.25 Aligned_cols=225 Identities=21% Similarity=0.176 Sum_probs=151.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+...... ....+.. ....+..+.+|++|.+++.++++
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~--~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~ 489 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEA--VAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL 489 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHH--HHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999987533222 1122211 12357789999999999888776
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCC-cCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALG-VKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+||||||...... ..+.+...+++|+.+...++..+ ++.+ .+++|++||..++++....
T Consensus 490 ~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~~------ 563 (676)
T TIGR02632 490 AYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKNA------ 563 (676)
T ss_pred hcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCCC------
Confidence 6899999999754322 23456778899999988776554 3333 3589999998666654321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCcc-CCCCCCCCchhHHHHHHHHcCCCC---
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVM-GPVIPPTLNASMLMLLRLLQGCTD--- 217 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~-G~~~~~~~~~~~~~~~~~~~g~~~--- 217 (323)
..|+.+|.+.+.+++.++.+. |++++.++|+.|+ |.+......... .....+...
T Consensus 564 ---------------~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~---~~~~~~~~~~~~ 625 (676)
T TIGR02632 564 ---------------SAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREE---RAAAYGIPADEL 625 (676)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhh---hhhcccCChHHH
Confidence 349999999999999988763 7999999999987 332211100000 000000000
Q ss_pred ----CccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 218 ----TYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 218 ----~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
........+++++|+|+++..++.... ..|. +++.+
T Consensus 626 ~~~~~~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDG 668 (676)
T TIGR02632 626 EEHYAKRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDG 668 (676)
T ss_pred HHHHHhcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECC
Confidence 001111236899999999998886432 2344 44543
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-20 Score=155.34 Aligned_cols=202 Identities=19% Similarity=0.156 Sum_probs=143.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccCC--CHhHHHHHh----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDLL--DYDAIAAAV---- 75 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~--~~~~~~~~~---- 75 (323)
+++|+|+||||+|+||.+++++|++.|++|++++|+..... .....+... ..++.++.+|++ +.+++.+++
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLE--AVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHH--HHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999753322 222222221 235677888886 555544433
Q ss_pred ---cCCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcc
Q 020608 76 ---TGCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 76 ---~~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
..+|+|||+|+.... ....+.+.+.+++|+.++.++++++. +.+.++||++||..+..+....
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~~~----- 162 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRANW----- 162 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCCCCC-----
Confidence 368999999987432 12335567889999999999988863 4567899999998555443221
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+.+.+++.++.+. ++++++++|+.+-++...... ... .+
T Consensus 163 ----------------~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~-----------~~~---~~ 212 (247)
T PRK08945 163 ----------------GAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAF-----------PGE---DP 212 (247)
T ss_pred ----------------cccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhc-----------Ccc---cc
Confidence 349999999999998887665 799999999998776321100 000 01
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
..+..++|++..+..++....
T Consensus 213 ---~~~~~~~~~~~~~~~~~~~~~ 233 (247)
T PRK08945 213 ---QKLKTPEDIMPLYLYLMGDDS 233 (247)
T ss_pred ---cCCCCHHHHHHHHHHHhCccc
Confidence 125678999999999886543
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=155.11 Aligned_cols=207 Identities=18% Similarity=0.185 Sum_probs=145.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++++||||||+|+||+++++.|+++|++|+++.|++.... ...+.+.. ..+++++.+|+++.++++++++
T Consensus 1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLK--RMKKTLSK-YGNIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred CCcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999753222 11122221 1257889999999988877654
Q ss_pred ---CCCEEEEcccCCccCC--CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 77 ---GCTGVFHLASPCIVDK--VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
.+|.+||+++...... ..+.+...+++|+.+...+++.+... ..+++|++||..+.+....
T Consensus 78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~------------ 145 (238)
T PRK05786 78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKASP------------ 145 (238)
T ss_pred HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCCC------------
Confidence 4699999998643211 22445677889999988888887543 2258999999754332110
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
+...|+.+|.+.+.+++.++.+. +++++++||+.++++..... . .... . .....+
T Consensus 146 --------~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~---~---~~~~---~-----~~~~~~ 203 (238)
T PRK05786 146 --------DQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPER---N---WKKL---R-----KLGDDM 203 (238)
T ss_pred --------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchh---h---hhhh---c-----cccCCC
Confidence 01349999999998888877664 89999999999999753210 0 0010 0 001125
Q ss_pred ccHHHHHHHHHHhhcCCC
Q 020608 227 VHFKDVALAHILVYENPS 244 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~ 244 (323)
+..+|++++++.++..+.
T Consensus 204 ~~~~~va~~~~~~~~~~~ 221 (238)
T PRK05786 204 APPEDFAKVIIWLLTDEA 221 (238)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 678999999999987533
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=154.91 Aligned_cols=210 Identities=13% Similarity=0.059 Sum_probs=145.3
Q ss_pred CCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+++||||++ .||.+++++|+++|++|++..|+. . ..+.++++........++.+|++|+++++++++
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~--~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-V--LEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKE 82 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-H--HHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHH
Confidence 5678999999997 899999999999999999887753 1 112223332111122457899999999887764
Q ss_pred ---CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|++||+|+.... +.+.+.+...+++|+.+...+++++... .-+++|++||.++..+.+..
T Consensus 83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~~----- 157 (260)
T PRK06603 83 KWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVIPNY----- 157 (260)
T ss_pred HcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccCCCcc-----
Confidence 57999999986421 1134567889999999999999886432 12599999998554332211
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+.+.+.+.++.+ +|++++.+.||.+-++....... ............ +
T Consensus 158 ----------------~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~----p 216 (260)
T PRK06603 158 ----------------NVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGD-FSTMLKSHAATA----P 216 (260)
T ss_pred ----------------cchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCC-cHHHHHHHHhcC----C
Confidence 34999999999999988876 48999999999998874221111 011111111111 1
Q ss_pred CcCCCcccHHHHHHHHHHhhcCC
Q 020608 221 NFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
.+ .+..++|+|.++.+++...
T Consensus 217 ~~--r~~~pedva~~~~~L~s~~ 237 (260)
T PRK06603 217 LK--RNTTQEDVGGAAVYLFSEL 237 (260)
T ss_pred cC--CCCCHHHHHHHHHHHhCcc
Confidence 11 2568999999999999753
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-20 Score=155.35 Aligned_cols=215 Identities=16% Similarity=0.080 Sum_probs=144.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 78 (323)
|++|||||+|+||++++++|+++|++|++++|+++... +..+++... .++.++.+|++|.++++++++ ++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~-~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLE--KALKELKEY-GEVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH--HHHHHHHhc-CCceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 58999999999999999999999999999998753222 222333221 367889999999998887764 68
Q ss_pred CEEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHH----h-hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 79 TGVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAA----K-ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 79 d~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~-~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
|+|||+||..... ...+++...+.+|+.++..+...+ . +.+.++||++||.++..+.+.
T Consensus 78 d~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~~---------- 147 (259)
T PRK08340 78 DALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMPP---------- 147 (259)
T ss_pred CEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCCC----------
Confidence 9999999964211 123345566778887766555443 2 233469999999855433221
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCc--------hhHH-HHHHHHcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLN--------ASML-MLLRLLQGC 215 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~--------~~~~-~~~~~~~g~ 215 (323)
...|+.+|...+.+++.++.++ |++++.+.||.+-.|....... .... ....+...
T Consensus 148 -----------~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 215 (259)
T PRK08340 148 -----------LVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLER- 215 (259)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhcc-
Confidence 1349999999999999998775 7999999999998875321100 0000 01111111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+.+ .+..++|+|+++..++.... ..|+.+
T Consensus 216 ---~p~~--r~~~p~dva~~~~fL~s~~~~~itG~~i 247 (259)
T PRK08340 216 ---TPLK--RTGRWEELGSLIAFLLSENAEYMLGSTI 247 (259)
T ss_pred ---CCcc--CCCCHHHHHHHHHHHcCcccccccCceE
Confidence 1111 25689999999999987542 345543
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-19 Score=152.08 Aligned_cols=217 Identities=14% Similarity=0.099 Sum_probs=147.4
Q ss_pred CCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+++||||++ .||++++++|+++|++|++..|+. + ..+..+++........++.+|++|.++++++++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-K--LKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-h--HHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHh
Confidence 4568999999985 999999999999999999888762 1 112223332222346678999999999887764
Q ss_pred ---CCCEEEEcccCCccC---------CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCc
Q 020608 77 ---GCTGVFHLASPCIVD---------KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|++|||||..... .+.+.+...+++|+.+...+.+++... .-+++|++||.+...+.+.+
T Consensus 81 ~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~~~~---- 156 (262)
T PRK07984 81 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNY---- 156 (262)
T ss_pred hcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCCc----
Confidence 479999999964321 123356678899999998888886432 12589999998544332211
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.||.+.+.+++.++.+ .|++++.|.||.+..+..... ..............
T Consensus 157 -----------------~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~-~~~~~~~~~~~~~~---- 214 (262)
T PRK07984 157 -----------------NVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-KDFRKMLAHCEAVT---- 214 (262)
T ss_pred -----------------chhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcC-CchHHHHHHHHHcC----
Confidence 34999999999999999876 489999999999987632110 00111111111111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
+. ..+..++|++.++++++.... ..|+..
T Consensus 215 p~--~r~~~pedva~~~~~L~s~~~~~itG~~i 245 (262)
T PRK07984 215 PI--RRTVTIEDVGNSAAFLCSDLSAGISGEVV 245 (262)
T ss_pred CC--cCCCCHHHHHHHHHHHcCcccccccCcEE
Confidence 11 125689999999999987532 345544
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=154.25 Aligned_cols=226 Identities=17% Similarity=0.124 Sum_probs=145.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------CC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------GC 78 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~ 78 (323)
.|+++|||+ |+||++++++|+ +|++|++++|+.++.. +..+++...+.++.++.+|++|.++++++++ .+
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLE--AAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHH--HHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 478899998 799999999996 8999999998753222 2223333223468889999999998887765 58
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCC-CCC---ccccCCCCCC-
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKW-PAD---KVKDEDCWTD- 151 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~-~~~---~~~~e~~~~~- 151 (323)
|+||||||... ...++..++++|+.++.++++++... .-+++|++||.++.....-. ... ..++.+....
T Consensus 78 d~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (275)
T PRK06940 78 TGLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSL 154 (275)
T ss_pred CEEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccc
Confidence 99999999742 24568889999999999999997542 12467888887554432000 000 0001100000
Q ss_pred ----hhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCc-hhHHHHHHHHcCCCCCccCcC
Q 020608 152 ----EEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLN-ASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 152 ----~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~ 223 (323)
+.........|+.||.+.+.+.+.++.+. |++++.+.||.+.++....... ........+.... +.
T Consensus 155 ~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~----p~-- 228 (275)
T PRK06940 155 PFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKS----PA-- 228 (275)
T ss_pred ccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhC----Cc--
Confidence 00000012459999999999988887663 8999999999999885321110 0001111221111 11
Q ss_pred CCcccHHHHHHHHHHhhcCC
Q 020608 224 MGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~ 243 (323)
..+..++|+|.++..++...
T Consensus 229 ~r~~~peeia~~~~fL~s~~ 248 (275)
T PRK06940 229 GRPGTPDEIAALAEFLMGPR 248 (275)
T ss_pred ccCCCHHHHHHHHHHHcCcc
Confidence 12568999999999998643
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=154.56 Aligned_cols=218 Identities=12% Similarity=0.040 Sum_probs=148.5
Q ss_pred CCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++|+++||||+ +.||.+++++|+++|++|++..|+....+ .++++.........+.+|++|.++++++++
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~---~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKK---RVEPLAAELGAFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHH---HHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHH
Confidence 457899999997 89999999999999999988877522122 222222111235578999999998887654
Q ss_pred ---CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|++|||||.... ..+.+.+...+++|+.++..+++++... +-+++|++||.++..+.+..
T Consensus 85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~p~~----- 159 (272)
T PRK08159 85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVMPHY----- 159 (272)
T ss_pred hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCCCcc-----
Confidence 57999999997531 1134567889999999999999987542 23699999997543322211
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+.+.+++.++.+. |++++++.||.+..+....... .. ......... .+
T Consensus 160 ----------------~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~-~~-~~~~~~~~~---~p 218 (272)
T PRK08159 160 ----------------NVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGD-FR-YILKWNEYN---AP 218 (272)
T ss_pred ----------------hhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCc-ch-HHHHHHHhC---Cc
Confidence 349999999999999888764 8999999999998763221100 00 011111111 11
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
.+ .+..++|+|++++.++.... ..|+.+.
T Consensus 219 ~~--r~~~peevA~~~~~L~s~~~~~itG~~i~ 249 (272)
T PRK08159 219 LR--RTVTIEEVGDSALYLLSDLSRGVTGEVHH 249 (272)
T ss_pred cc--ccCCHHHHHHHHHHHhCccccCccceEEE
Confidence 11 25689999999999997533 3455443
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=153.04 Aligned_cols=210 Identities=12% Similarity=0.045 Sum_probs=144.2
Q ss_pred CCCceEEEecc--ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGG--SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+++|||| ++.||.+++++|+++|++|++..|.....+..+ ++.........+.+|++|+++++++++
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRIT---EFAAEFGSDLVFPCDVASDEQIDALFASLGQ 80 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHH---HHHHhcCCcceeeccCCCHHHHHHHHHHHHH
Confidence 46789999996 689999999999999999998766422222222 221111123468899999999887764
Q ss_pred ---CCCEEEEcccCCccC---------CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCc
Q 020608 77 ---GCTGVFHLASPCIVD---------KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|++|||||..... .+.+.+...+++|+.++..+++++... +-+++|++||.++..+.+..
T Consensus 81 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~~~~---- 156 (260)
T PRK06997 81 HWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVVPNY---- 156 (260)
T ss_pred HhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCCCCc----
Confidence 589999999975321 123467788999999999999887542 23589999998554332211
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+.+.++.+ +|++++.+.||.+-.+....... .......+....
T Consensus 157 -----------------~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~-~~~~~~~~~~~~---- 214 (260)
T PRK06997 157 -----------------NTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKD-FGKILDFVESNA---- 214 (260)
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccc-hhhHHHHHHhcC----
Confidence 34999999999999998876 38999999999998864221100 011111111111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+.+ .+..++|+++++..++...
T Consensus 215 p~~--r~~~pedva~~~~~l~s~~ 236 (260)
T PRK06997 215 PLR--RNVTIEEVGNVAAFLLSDL 236 (260)
T ss_pred ccc--ccCCHHHHHHHHHHHhCcc
Confidence 111 2568999999999998753
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=171.96 Aligned_cols=217 Identities=19% Similarity=0.133 Sum_probs=150.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
++++++|||||+|+||++++++|+++|++|++++|+.+... +....+...+.++.++.+|++|+++++++++
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAE--RTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999753322 2222232224478899999999999887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCC-cCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALG-VKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.+|+||||||...... +.+.+...+++|+.|+.++++++. +.+ .++||++||.+++.+....
T Consensus 391 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~-------- 462 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRSL-------- 462 (582)
T ss_pred CCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCCCC--------
Confidence 4799999999854322 345677889999999999988863 333 3599999999665543321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCch--hHHHHHHHHcCCCCCccC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNA--SMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~--~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.+ +|+++++++||.+-++........ ........ ........
T Consensus 463 -------------~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 527 (582)
T PRK05855 463 -------------PAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEARR-RGRADKLY- 527 (582)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccchhhhH-Hhhhhhhc-
Confidence 34999999999988888765 489999999999988753321100 00000000 00000000
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCC
Q 020608 222 FFMGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
......++|+|++++.++.++..
T Consensus 528 -~~~~~~p~~va~~~~~~~~~~~~ 550 (582)
T PRK05855 528 -QRRGYGPEKVAKAIVDAVKRNKA 550 (582)
T ss_pred -cccCCCHHHHHHHHHHHHHcCCC
Confidence 01134689999999999987543
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=173.77 Aligned_cols=200 Identities=20% Similarity=0.177 Sum_probs=149.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+++||||+|+||++++++|+++|++|++++|+.+... +....+...+.++.++.+|++|.++++++++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALD--ELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999753322 2222232224578899999999999888766
Q ss_pred -CCCEEEEcccCCccCC---C---CCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 -GCTGVFHLASPCIVDK---V---EDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~---~---~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||...... . .+.+...+++|+.++.++++++ ++.+.++||++||.+++.+.+..
T Consensus 447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------- 519 (657)
T PRK07201 447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAPRF------- 519 (657)
T ss_pred CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCc-------
Confidence 5899999999742211 1 1356788999999999887775 34556799999998665433211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+.++....... + .
T Consensus 520 --------------~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~~----------------~--~ 567 (657)
T PRK07201 520 --------------SAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTKR----------------Y--N 567 (657)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcccc----------------c--c
Confidence 349999999999998887664 8999999999999886432100 0 0
Q ss_pred CCCcccHHHHHHHHHHhhcCC
Q 020608 223 FMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~ 243 (323)
....+.++++|+.++..+.+.
T Consensus 568 ~~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 568 NVPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 112467999999999987643
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-19 Score=153.01 Aligned_cols=206 Identities=17% Similarity=0.112 Sum_probs=137.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHH----HHHh-----
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAI----AAAV----- 75 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~----~~~~----- 75 (323)
++++||||+|+||++++++|+++|++|+++.|+..+. .....+.+.. .+.+..++.+|++|.+.+ ++++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAA-ASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHH-HHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 5799999999999999999999999999887653221 1122222321 123566789999998754 3332
Q ss_pred --cCCCEEEEcccCCccCC----CCC-----------chhhhhhHHHHHHHHHHHHHhhCC----------cCEEEEecc
Q 020608 76 --TGCTGVFHLASPCIVDK----VED-----------PQNQLLNPAVKGTVNVLTAAKALG----------VKRVVVTSS 128 (323)
Q Consensus 76 --~~~d~Vih~a~~~~~~~----~~~-----------~~~~~~~~n~~~~~~l~~~~~~~~----------~~~~v~~SS 128 (323)
.++|+||||||...... ... .+...+++|+.++..+++++.... ..+++++||
T Consensus 81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s 160 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD 160 (267)
T ss_pred ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence 36899999999643211 111 256789999999999998763221 236888887
Q ss_pred cccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhH
Q 020608 129 ISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASM 205 (323)
Q Consensus 129 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~ 205 (323)
.....+... ...|+.+|.+.+.+++.++.+ .|+++++++||.+..|.....
T Consensus 161 ~~~~~~~~~---------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~~----- 214 (267)
T TIGR02685 161 AMTDQPLLG---------------------FTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMPF----- 214 (267)
T ss_pred hhccCCCcc---------------------cchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccch-----
Confidence 744322211 144999999999999998777 589999999999977632111
Q ss_pred HHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 206 LMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 206 ~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
..........+ .+ ..+..++|++++++.++...
T Consensus 215 ~~~~~~~~~~~--~~---~~~~~~~~va~~~~~l~~~~ 247 (267)
T TIGR02685 215 EVQEDYRRKVP--LG---QREASAEQIADVVIFLVSPK 247 (267)
T ss_pred hHHHHHHHhCC--CC---cCCCCHHHHHHHHHHHhCcc
Confidence 11112111111 11 12457999999999998754
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-19 Score=149.01 Aligned_cols=217 Identities=16% Similarity=0.102 Sum_probs=146.2
Q ss_pred CCCceEEEecc--ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGG--SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+++|||| ++.||.+++++|+++|++|++++|+.......+..+++. ..+.++.+|++|.++++++++
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP---EPAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC---CCCcEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999999 899999999999999999999987642111112222222 256789999999998877654
Q ss_pred ---CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|++|||||.... ....+.+.+.+++|+.++..+++++... ..+++|++|+.+ ..+.+.
T Consensus 82 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~-~~~~~~------ 154 (256)
T PRK07889 82 HVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDA-TVAWPA------ 154 (256)
T ss_pred HcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecc-cccCCc------
Confidence 58999999997521 1123456678999999999998887432 125899888652 111111
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
...|+.||...+.+.+.++.+ +|++++.+.||.+..|...... ........+....+ .+
T Consensus 155 ---------------~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~p--~~ 216 (256)
T PRK07889 155 ---------------YDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIP-GFELLEEGWDERAP--LG 216 (256)
T ss_pred ---------------cchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhccc-CcHHHHHHHHhcCc--cc
Confidence 034899999999999888776 4899999999999887532111 00111111111111 11
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
..+..++|+|++++.++.... ..|++.
T Consensus 217 ---~~~~~p~evA~~v~~l~s~~~~~~tG~~i 245 (256)
T PRK07889 217 ---WDVKDPTPVARAVVALLSDWFPATTGEIV 245 (256)
T ss_pred ---cccCCHHHHHHHHHHHhCcccccccceEE
Confidence 125679999999999987543 245543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=147.21 Aligned_cols=186 Identities=22% Similarity=0.175 Sum_probs=139.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~Vi 82 (323)
|+++||||+|+||++++++|+++ ++|++++|+.. .+.+|++|.++++++++ ++|+||
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~id~lv 60 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-------------------DVQVDITDPASIRALFEKVGKVDAVV 60 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-------------------ceEecCCChHHHHHHHHhcCCCCEEE
Confidence 47999999999999999999999 99999988641 35799999999988877 689999
Q ss_pred EcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCCCChhhhc
Q 020608 83 HLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCR 156 (323)
Q Consensus 83 h~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 156 (323)
|+||...... ..+.+.+.+++|+.++.++++++... +..+++++||..+..+.+..
T Consensus 61 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~~~------------------ 122 (199)
T PRK07578 61 SAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPIPGG------------------ 122 (199)
T ss_pred ECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCCCCc------------------
Confidence 9999753321 34467788999999999999987542 23589999998554333211
Q ss_pred cCCCchHHHHHHHHHHHHHHHHh--CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHH
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKE--KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVAL 234 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~ 234 (323)
..|+.+|.+.+.+++.++.+ .|++++.++||.+-.+... .... ++ ...++.++|+|+
T Consensus 123 ---~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~---------~~~~-------~~--~~~~~~~~~~a~ 181 (199)
T PRK07578 123 ---ASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESLEK---------YGPF-------FP--GFEPVPAARVAL 181 (199)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchhh---------hhhc-------CC--CCCCCCHHHHHH
Confidence 34999999999999988876 4899999999988554210 0000 01 122578999999
Q ss_pred HHHHhhcCCCCCccEE
Q 020608 235 AHILVYENPSACGRHL 250 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~ 250 (323)
+++.+++....+..++
T Consensus 182 ~~~~~~~~~~~g~~~~ 197 (199)
T PRK07578 182 AYVRSVEGAQTGEVYK 197 (199)
T ss_pred HHHHHhccceeeEEec
Confidence 9999988654433343
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=156.57 Aligned_cols=198 Identities=15% Similarity=0.113 Sum_probs=139.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC--CCCeEEEEccCCC--HhHHH---HHhc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLD--YDAIA---AAVT 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~--~~~~~---~~~~ 76 (323)
.++.++||||||+||++++++|+++|++|++++|++++.+. ..+++... ..++..+.+|+++ .+.++ +.+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~--~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~ 129 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKD--VSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIE 129 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHH--HHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhc
Confidence 46899999999999999999999999999999997543222 22222221 2357778899985 33333 3334
Q ss_pred C--CCEEEEcccCCcc------CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 G--CTGVFHLASPCIV------DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ~--~d~Vih~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
+ +|++|||||.... +.+.+.+...+++|+.++.++++++. +.+.+++|++||.+++.....
T Consensus 130 ~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~~------- 202 (320)
T PLN02780 130 GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPSD------- 202 (320)
T ss_pred CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCC-------
Confidence 3 5699999997532 11334567789999999999999863 345579999999865431110
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
+ ....|+.||.+.+.+.+.++.+. |++++++.||.+-++..... ...
T Consensus 203 ----p--------~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~~------------~~~------ 252 (320)
T PLN02780 203 ----P--------LYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIR------------RSS------ 252 (320)
T ss_pred ----c--------cchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccccc------------CCC------
Confidence 0 01449999999999999988764 89999999999987743210 000
Q ss_pred cCCCcccHHHHHHHHHHhhcC
Q 020608 222 FFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.....++++|+.++..+..
T Consensus 253 --~~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 253 --FLVPSSDGYARAALRWVGY 271 (320)
T ss_pred --CCCCCHHHHHHHHHHHhCC
Confidence 1124789999999999864
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-19 Score=152.89 Aligned_cols=232 Identities=14% Similarity=0.113 Sum_probs=148.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
++++++||||+++||.+++++|+++| ++|+++.|+..+.. +....+......+.++.+|++|.++++++++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 79 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAE--QAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESG 79 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHH--HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999 99999998753322 2223333223467889999999988776653
Q ss_pred -CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHh----hCC--cCEEEEecccccccCCCCCCCCccc
Q 020608 77 -GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAK----ALG--VKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|++||+||..... .+.+.+...+++|+.++..+++++. +.+ .++||++||.++...........+.
T Consensus 80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~ 159 (314)
T TIGR01289 80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKA 159 (314)
T ss_pred CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcc
Confidence 589999999964321 1335677889999999988877753 332 3699999998654321100000000
Q ss_pred ------------------cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCCCcc-CCCCCCCC
Q 020608 145 ------------------DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPGTVM-GPVIPPTL 201 (323)
Q Consensus 145 ------------------~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~~v~-G~~~~~~~ 201 (323)
.+..+..+ ...|+.||++...+.+.++++ .|+.++.++||.|. .+......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~ 233 (314)
T TIGR01289 160 NLGDLSGLAAGFKAPIAMIDGKEFKG------AKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHV 233 (314)
T ss_pred cccccccccccCCCcccccCCCCcch------hhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCccccccc
Confidence 01111111 145999999988888877765 37999999999995 44332211
Q ss_pred chhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 202 NASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 202 ~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
......+..+.... ...+..+++.|..++.++.... .+|.|.
T Consensus 234 ~~~~~~~~~~~~~~-------~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~ 277 (314)
T TIGR01289 234 PLFRTLFPPFQKYI-------TKGYVSEEEAGERLAQVVSDPKLKKSGVYW 277 (314)
T ss_pred HHHHHHHHHHHHHH-------hccccchhhhhhhhHHhhcCcccCCCceee
Confidence 11111111110000 0114578999999998876543 245554
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-19 Score=147.21 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=141.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----CCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-----GCT 79 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d 79 (323)
|++++||||+|+||++++++|+++|++|+++.|+++.. +.+.. .+++++.+|+++.+.++++++ ++|
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~---~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAAL---AALQA-----LGAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHH---HHHHh-----ccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 57999999999999999999999999999999875322 22221 145689999999998887642 489
Q ss_pred EEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 80 GVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 80 ~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
+|||+++..... .+.+++...+++|+.++.++++++... ..++++++||..+.++.....
T Consensus 73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~----------- 141 (222)
T PRK06953 73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATGT----------- 141 (222)
T ss_pred EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccCC-----------
Confidence 999999975321 144567889999999999999998642 235899999975555432100
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhC-CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccH
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHF 229 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v 229 (323)
....|+.+|...+.+++.++.++ +++++.++||.+..+.... ...+..
T Consensus 142 -------~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~~------------------------~~~~~~ 190 (222)
T PRK06953 142 -------TGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGGA------------------------QAALDP 190 (222)
T ss_pred -------CccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCCC------------------------CCCCCH
Confidence 00249999999999999887665 8899999999998875321 112457
Q ss_pred HHHHHHHHHhhcCCC
Q 020608 230 KDVALAHILVYENPS 244 (323)
Q Consensus 230 ~D~a~~~~~~~~~~~ 244 (323)
+|.+..+..++....
T Consensus 191 ~~~~~~~~~~~~~~~ 205 (222)
T PRK06953 191 AQSVAGMRRVIAQAT 205 (222)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888766443
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=154.49 Aligned_cols=218 Identities=18% Similarity=0.100 Sum_probs=144.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc--------HHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD--------ERETAHLKALEGADTRLRLFQIDLLDYDAIAAA 74 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (323)
+++|+++||||+++||.+++++|++.|++|++++|+..+ ....+..+.+...+.++.++.+|++|.++++++
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 567999999999999999999999999999999987421 111122222333234577899999999988876
Q ss_pred hc-------CCCEEEEcc-cCCc-----cC---CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccC
Q 020608 75 VT-------GCTGVFHLA-SPCI-----VD---KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITP 134 (323)
Q Consensus 75 ~~-------~~d~Vih~a-~~~~-----~~---~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~ 134 (323)
++ ++|++|||| +... .+ ...+.+.+.+++|+.++..+++++.. .+.++||++||..+...
T Consensus 86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~ 165 (305)
T PRK08303 86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYN 165 (305)
T ss_pred HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcccccc
Confidence 54 579999999 6321 11 12345667889999999998888633 33469999999644321
Q ss_pred CCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHH
Q 020608 135 SPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRL 211 (323)
Q Consensus 135 ~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~ 211 (323)
.... + ....|+.+|.+...+.+.++.+. |++++.|.||.+-.+................
T Consensus 166 ~~~~----------~--------~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~ 227 (305)
T PRK08303 166 ATHY----------R--------LSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEENWRDA 227 (305)
T ss_pred CcCC----------C--------CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccchhhh
Confidence 1100 0 01349999999999998887764 7999999999997763210000000000000
Q ss_pred HcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 212 LQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 212 ~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
.. . .+. ...+..++|+|.+++.++..+
T Consensus 228 ~~-~---~p~-~~~~~~peevA~~v~fL~s~~ 254 (305)
T PRK08303 228 LA-K---EPH-FAISETPRYVGRAVAALAADP 254 (305)
T ss_pred hc-c---ccc-cccCCCHHHHHHHHHHHHcCc
Confidence 00 0 110 011347899999999999765
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=159.48 Aligned_cols=206 Identities=20% Similarity=0.113 Sum_probs=144.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++++++||||+|+||..+++.|+++|++|+++.|........+...++ +..++.+|++|.++++++++
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~~ 282 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRV-----GGTALALDITAPDAPARIAEHLAERH 282 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHHHhC
Confidence 3578999999999999999999999999999998854322222222222 34578899999998877665
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhCC----cCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKALG----VKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... ...+.+...+++|+.++.++.+++.... .++||++||.+++.+....
T Consensus 283 g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~~~--------- 353 (450)
T PRK08261 283 GGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNRGQ--------- 353 (450)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCC---------
Confidence 579999999975322 1345677889999999999999986532 2699999998766554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|...+.+++.++.+ .|++++.+.||.+-.+.... ... ......+.. ... .
T Consensus 354 ------------~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~-~~~---~~~~~~~~~-~~l----~ 412 (450)
T PRK08261 354 ------------TNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA-IPF---ATREAGRRM-NSL----Q 412 (450)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc-cch---hHHHHHhhc-CCc----C
Confidence 34999999888888777655 48999999999987653221 110 011111111 011 1
Q ss_pred CcccHHHHHHHHHHhhcCC
Q 020608 225 GSVHFKDVALAHILVYENP 243 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~ 243 (323)
....++|+|+++.+++...
T Consensus 413 ~~~~p~dva~~~~~l~s~~ 431 (450)
T PRK08261 413 QGGLPVDVAETIAWLASPA 431 (450)
T ss_pred CCCCHHHHHHHHHHHhChh
Confidence 1235789999999998743
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=150.78 Aligned_cols=207 Identities=17% Similarity=0.102 Sum_probs=141.1
Q ss_pred eEEEeccccHHHHHHHHHHHH----CCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhcC---
Q 020608 7 VVCVTGGSGCIGSWLVSLLLE----RRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVTG--- 77 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~--- 77 (323)
.++||||+|+||.+++++|++ .|++|+++.|+.+... +..+++.. .+.++.++.+|++|.++++++++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~--~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~ 79 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALR--QLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRE 79 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHH--HHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHh
Confidence 589999999999999999997 7999999999754322 22222322 134678899999999988876642
Q ss_pred --------CCEEEEcccCCcc-CC------CCCchhhhhhHHHHHHHHHHHHHhhC-----C-cCEEEEecccccccCCC
Q 020608 78 --------CTGVFHLASPCIV-DK------VEDPQNQLLNPAVKGTVNVLTAAKAL-----G-VKRVVVTSSISSITPSP 136 (323)
Q Consensus 78 --------~d~Vih~a~~~~~-~~------~~~~~~~~~~~n~~~~~~l~~~~~~~-----~-~~~~v~~SS~~~~~~~~ 136 (323)
.|+||||||.... .. ..+.+...+++|+.++..+++.+... + .+++|++||.++..+.+
T Consensus 80 ~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~ 159 (256)
T TIGR01500 80 LPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFK 159 (256)
T ss_pred ccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCC
Confidence 2589999996422 11 12456789999999998888776332 2 25899999986554332
Q ss_pred CCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc--hhHHHHHHH
Q 020608 137 KWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRL 211 (323)
Q Consensus 137 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~ 211 (323)
.. ..|+.+|.+.+.+++.++.+ .|+.++.+.||.+-++....... ........+
T Consensus 160 ~~---------------------~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 218 (256)
T TIGR01500 160 GW---------------------ALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGL 218 (256)
T ss_pred Cc---------------------hHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHH
Confidence 21 34999999999999998776 37999999999998764210000 000000011
Q ss_pred HcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 212 LQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 212 ~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.... +. ..+..++|+|.+++.++++
T Consensus 219 ~~~~----~~--~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 219 QELK----AK--GKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred HHHH----hc--CCCCCHHHHHHHHHHHHhc
Confidence 0000 11 1156899999999999863
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=163.52 Aligned_cols=210 Identities=20% Similarity=0.153 Sum_probs=150.0
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|..++|+++||||+++||.+++++|+++|++|++++|+.+... +...++ +.++.++.+|++|+++++++++
T Consensus 1 ~~~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (520)
T PRK06484 1 SKAQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERAR--ERADSL---GPDHHALAMDVSDEAQIREGFEQLHR 75 (520)
T ss_pred CCCCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHh---CCceeEEEeccCCHHHHHHHHHHHHH
Confidence 5567899999999999999999999999999999988753322 222222 2367789999999998887664
Q ss_pred ---CCCEEEEcccCCcc------CCCCCchhhhhhHHHHHHHHHHHHHhhC----Cc-CEEEEecccccccCCCCCCCCc
Q 020608 77 ---GCTGVFHLASPCIV------DKVEDPQNQLLNPAVKGTVNVLTAAKAL----GV-KRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+|||+||.... ..+.+++...+++|+.++..+++++... +. .++|++||..+..+....
T Consensus 76 ~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~---- 151 (520)
T PRK06484 76 EFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALPKR---- 151 (520)
T ss_pred HhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCCCC----
Confidence 58999999986321 1244567889999999999999987432 33 399999998665544321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|...+.+.+.++.+. +++++.++||.+.++................... .
T Consensus 152 -----------------~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~----~ 210 (520)
T PRK06484 152 -----------------TAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSR----I 210 (520)
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhc----C
Confidence 349999999999998887764 8999999999998775321100000000111111 1
Q ss_pred cCcCCCcccHHHHHHHHHHhhcC
Q 020608 220 ENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
+. ..+..++|++.++..++..
T Consensus 211 ~~--~~~~~~~~va~~v~~l~~~ 231 (520)
T PRK06484 211 PL--GRLGRPEEIAEAVFFLASD 231 (520)
T ss_pred CC--CCCcCHHHHHHHHHHHhCc
Confidence 11 1256789999999998874
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=150.62 Aligned_cols=219 Identities=24% Similarity=0.314 Sum_probs=147.3
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcccC
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLASP 87 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a~~ 87 (323)
|+|+||||.+|+++++.|++.+++|+++.|+.+ ......+.. .+++.+.+|+.|.+.+.++++++|.||.+.+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~-~~~~~~l~~-----~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS-SDRAQQLQA-----LGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH-HHHHHHHHH-----TTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc-hhhhhhhhc-----ccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 799999999999999999999999999999872 222233332 26788999999999999999999999988765
Q ss_pred CccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHH
Q 020608 88 CIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKT 167 (323)
Q Consensus 88 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~ 167 (323)
.. ..-+....+++++|++.|+++||+ ||....+.... ...|. .+.-..|.
T Consensus 75 ~~------------~~~~~~~~~li~Aa~~agVk~~v~-ss~~~~~~~~~-----------~~~p~------~~~~~~k~ 124 (233)
T PF05368_consen 75 SH------------PSELEQQKNLIDAAKAAGVKHFVP-SSFGADYDESS-----------GSEPE------IPHFDQKA 124 (233)
T ss_dssp SC------------CCHHHHHHHHHHHHHHHT-SEEEE-SEESSGTTTTT-----------TSTTH------HHHHHHHH
T ss_pred ch------------hhhhhhhhhHHHhhhccccceEEE-EEecccccccc-----------ccccc------chhhhhhh
Confidence 21 122456778999999999999986 44423331110 00000 12445788
Q ss_pred HHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC-CCC-cc--CcCCCc-ccHHHHHHHHHHhhcC
Q 020608 168 LAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC-TDT-YE--NFFMGS-VHFKDVALAHILVYEN 242 (323)
Q Consensus 168 ~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~-~~--~~~~~~-i~v~D~a~~~~~~~~~ 242 (323)
..|+.++ +.+++++++|||..+....... .......... ... .+ +....+ ++.+|+++++..++.+
T Consensus 125 ~ie~~l~----~~~i~~t~i~~g~f~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~ 195 (233)
T PF05368_consen 125 EIEEYLR----ESGIPYTIIRPGFFMENLLPPF-----APVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLD 195 (233)
T ss_dssp HHHHHHH----HCTSEBEEEEE-EEHHHHHTTT-----HHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHS
T ss_pred hhhhhhh----hccccceeccccchhhhhhhhh-----cccccccccceEEEEccCCCccccccccHHHHHHHHHHHHcC
Confidence 7887764 5599999999998865321110 0000011111 011 22 222346 4999999999999988
Q ss_pred CCCC--cc-EEEEcCccCHHHHHHHHHHHCCC
Q 020608 243 PSAC--GR-HLCVEAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 243 ~~~~--~~-~~~~~~~~~~~e~~~~i~~~~~~ 271 (323)
+... +. +.++++.+|..|+++.+.+.+|.
T Consensus 196 p~~~~~~~~~~~~~~~~t~~eia~~~s~~~G~ 227 (233)
T PF05368_consen 196 PEKHNNGKTIFLAGETLTYNEIAAILSKVLGK 227 (233)
T ss_dssp GGGTTEEEEEEEGGGEEEHHHHHHHHHHHHTS
T ss_pred hHHhcCCEEEEeCCCCCCHHHHHHHHHHHHCC
Confidence 6654 34 45677889999999999999875
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=144.77 Aligned_cols=203 Identities=17% Similarity=0.141 Sum_probs=141.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCC-CCeEEEEccCCCHhHHHHHhc-------C
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGAD-TRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
|+++||||++.||.+++++|+ +|++|++++|+.++.+ +..+++...+ ..+.++.+|++|.++++++++ +
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~--~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 77 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQ--GLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGE 77 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHH--HHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCC
Confidence 579999999999999999998 5999999998754322 2223333222 247889999999988877654 5
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCC-cCEEEEecccccccCCCCCCCCccccCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALG-VKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
+|++||+||...... ......+.+++|+.+...++..+ .+.+ .+++|++||..+..+....
T Consensus 78 id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~---------- 147 (246)
T PRK05599 78 ISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARRAN---------- 147 (246)
T ss_pred CCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCcCC----------
Confidence 799999999753211 22234456778888887666554 3332 3699999998554433211
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|.+.+.+.+.++.+ .|++++.+.||.+.++..... .+. + .
T Consensus 148 -----------~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~--------------~~~--~---~- 196 (246)
T PRK05599 148 -----------YVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTGM--------------KPA--P---M- 196 (246)
T ss_pred -----------cchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcCC--------------CCC--C---C-
Confidence 34999999999999888876 489999999999987642110 000 0 0
Q ss_pred cccHHHHHHHHHHhhcCCCCCccEEEE
Q 020608 226 SVHFKDVALAHILVYENPSACGRHLCV 252 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~~~~~~~~~ 252 (323)
...++|+|++++.++.+......+.+.
T Consensus 197 ~~~pe~~a~~~~~~~~~~~~~~~~~~~ 223 (246)
T PRK05599 197 SVYPRDVAAAVVSAITSSKRSTTLWIP 223 (246)
T ss_pred CCCHHHHHHHHHHHHhcCCCCceEEeC
Confidence 246899999999999876543333333
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=145.66 Aligned_cols=189 Identities=13% Similarity=0.058 Sum_probs=131.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+++||||+|+||++++++|+++|++|++++|+..+.. ... . . . ...++.+|++|.+++.+.+.++|++|
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~--~~~--~-~-~-~~~~~~~D~~~~~~~~~~~~~iDilV 84 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNS--ESN--D-E-S-PNEWIKWECGKEESLDKQLASLDVLI 84 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhh--hhh--c-c-C-CCeEEEeeCCCHHHHHHhcCCCCEEE
Confidence 46789999999999999999999999999999998752111 111 1 1 1 22568899999999999888999999
Q ss_pred EcccCCccC-CCCCchhhhhhHHHHHHHHHHHHHhhC-------CcCEEEEecccccccCCCCCCCCccccCCCCCChhh
Q 020608 83 HLASPCIVD-KVEDPQNQLLNPAVKGTVNVLTAAKAL-------GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEY 154 (323)
Q Consensus 83 h~a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~ 154 (323)
||||..... .+.+++...+++|+.++.++++++... +.+.++..||.+...+. .
T Consensus 85 nnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~~-~----------------- 146 (245)
T PRK12367 85 LNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQPA-L----------------- 146 (245)
T ss_pred ECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCCC-C-----------------
Confidence 999975332 245677889999999999999987431 12234444554222111 0
Q ss_pred hccCCCchHHHHHHHHHHH---HHHHH---hCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCccc
Q 020608 155 CRQNEIWYPLSKTLAEKAA---WEFAK---EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVH 228 (323)
Q Consensus 155 ~~~~~~~Y~~sK~~~e~~~---~~~~~---~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 228 (323)
...|+.||.+.+.+. ..++. ..++.+..+.||.+.++.. + ...+.
T Consensus 147 ----~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~------------------~-------~~~~~ 197 (245)
T PRK12367 147 ----SPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELN------------------P-------IGIMS 197 (245)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccC------------------c-------cCCCC
Confidence 034999999875433 22221 2478888888887644320 0 01357
Q ss_pred HHHHHHHHHHhhcCCCC
Q 020608 229 FKDVALAHILVYENPSA 245 (323)
Q Consensus 229 v~D~a~~~~~~~~~~~~ 245 (323)
++|+|+.++.++.+...
T Consensus 198 ~~~vA~~i~~~~~~~~~ 214 (245)
T PRK12367 198 ADFVAKQILDQANLGLY 214 (245)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 89999999999876543
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=153.77 Aligned_cols=191 Identities=17% Similarity=0.101 Sum_probs=131.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++++|+|+||||+|+||++++++|+++|++|++++|+..+.. .... ....++..+.+|++|.+++.+.+.++|++
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~--~~~~---~~~~~v~~v~~Dvsd~~~v~~~l~~IDiL 249 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKIT--LEIN---GEDLPVKTLHWQVGQEAALAELLEKVDIL 249 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHh---hcCCCeEEEEeeCCCHHHHHHHhCCCCEE
Confidence 457899999999999999999999999999999988643221 1111 11224677899999999999999999999
Q ss_pred EEcccCCccC-CCCCchhhhhhHHHHHHHHHHHHHhh----CC---cC-EEEEecccccccCCCCCCCCccccCCCCCCh
Q 020608 82 FHLASPCIVD-KVEDPQNQLLNPAVKGTVNVLTAAKA----LG---VK-RVVVTSSISSITPSPKWPADKVKDEDCWTDE 152 (323)
Q Consensus 82 ih~a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~ 152 (323)
||+||..... .+.+++.+.+++|+.++.++++++.. .+ .+ .+|++|+. ...+ ..
T Consensus 250 InnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa-~~~~-~~--------------- 312 (406)
T PRK07424 250 IINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEA-EVNP-AF--------------- 312 (406)
T ss_pred EECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccc-cccC-CC---------------
Confidence 9999875432 24456788999999999999999732 22 12 34555542 2211 00
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHH
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDV 232 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~ 232 (323)
...|+.||.+.+.+........++.+..+.||.+..+. + + ...+.++|+
T Consensus 313 ------~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~~-----------------~-----~---~~~~spe~v 361 (406)
T PRK07424 313 ------SPLYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSNL-----------------N-----P---IGVMSADWV 361 (406)
T ss_pred ------chHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCCC-----------------C-----c---CCCCCHHHH
Confidence 02399999999887643333345555555554432211 0 0 113578999
Q ss_pred HHHHHHhhcCCCC
Q 020608 233 ALAHILVYENPSA 245 (323)
Q Consensus 233 a~~~~~~~~~~~~ 245 (323)
|+.++.++++++.
T Consensus 362 A~~il~~i~~~~~ 374 (406)
T PRK07424 362 AKQILKLAKRDFR 374 (406)
T ss_pred HHHHHHHHHCCCC
Confidence 9999999986643
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=147.02 Aligned_cols=167 Identities=21% Similarity=0.215 Sum_probs=125.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----CCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-----GCT 79 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d 79 (323)
||+|+||||+|+||++++++|+++|++|++++|++.+.... ... .++.++.+|++|.+++.++++ ++|
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~---~~~----~~~~~~~~D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL---QAL----PGVHIEKLDMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH---Hhc----cccceEEcCCCCHHHHHHHHHHhhcCCCC
Confidence 57999999999999999999999999999999987543322 111 256778899999988877665 589
Q ss_pred EEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 80 GVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 80 ~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
+|||+||..... ...+++...+++|+.++..+++++... +...++++||..+..+... .+
T Consensus 74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~~-------~~---- 142 (225)
T PRK08177 74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELPD-------GG---- 142 (225)
T ss_pred EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccCC-------CC----
Confidence 999999875321 133456778899999999999987543 2357888888633221110 00
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCC
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPV 196 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~ 196 (323)
....|+.+|.+.+.+++.++.+. ++.++.++||.+-++.
T Consensus 143 -------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 143 -------EMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred -------CccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 01349999999999999987763 7999999999998875
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-18 Score=142.70 Aligned_cols=219 Identities=21% Similarity=0.187 Sum_probs=151.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHH-HHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETA-HLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
.+++|+++||||+..||+++|++|++.|.+|++..|+.+...... .+........++..+.+|+++.++.+++++
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999765432222 222222224568899999999877666543
Q ss_pred ----CCCEEEEcccCCccC-----CCCCchhhhhhHHHHH-HHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCc
Q 020608 77 ----GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKG-TVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~-~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|++||+||..... .+.+.++..+++|+.| ...+.+++. +.+...++++||.+........
T Consensus 85 ~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~~---- 160 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGS---- 160 (270)
T ss_pred HhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCC----
Confidence 589999999976532 2567789999999995 666666663 3345689999998555443221
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc-hhHHHHHHHHcCCCCC
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN-ASMLMLLRLLQGCTDT 218 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~-~~~~~~~~~~~g~~~~ 218 (323)
+..|+.+|.+.+.+.+.++.+ +|++++++-||.+.++....... .....+..... ....
T Consensus 161 ----------------~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~-~~~~ 223 (270)
T KOG0725|consen 161 ----------------GVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATD-SKGA 223 (270)
T ss_pred ----------------cccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhc-cccc
Confidence 024999999999999988866 48999999999999986111110 00111111100 1111
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
.+.++ +..++|++.++..++...
T Consensus 224 ~p~gr--~g~~~eva~~~~fla~~~ 246 (270)
T KOG0725|consen 224 VPLGR--VGTPEEVAEAAAFLASDD 246 (270)
T ss_pred cccCC--ccCHHHHHHhHHhhcCcc
Confidence 12222 457899999999888764
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-19 Score=139.36 Aligned_cols=217 Identities=20% Similarity=0.203 Sum_probs=154.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++.+|++++|||.|+||++++++|+++|..+.++..+.++.+....+.+. .....+.|+++|+++..+++++++
T Consensus 1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai-~p~~~v~F~~~DVt~~~~~~~~f~ki~~ 79 (261)
T KOG4169|consen 1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAI-NPSVSVIFIKCDVTNRGDLEAAFDKILA 79 (261)
T ss_pred CcccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhcc-CCCceEEEEEeccccHHHHHHHHHHHHH
Confidence 678899999999999999999999999999888887666554444444332 224578999999999999998877
Q ss_pred ---CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHH-----hhCC--cCEEEEecccccccCCCCCCCCccccC
Q 020608 77 ---GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA-----KALG--VKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~-----~~~~--~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.+|++||.||.. ..++++.++.+|+.|..+-...+ ++.+ .+-+|++||..+.++.+..+.
T Consensus 80 ~fg~iDIlINgAGi~----~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~pV------ 149 (261)
T KOG4169|consen 80 TFGTIDILINGAGIL----DDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPV------ 149 (261)
T ss_pred HhCceEEEEcccccc----cchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccchh------
Confidence 579999999984 57789999999999887776665 3332 358999999877766553322
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHH-----HHHhCCccEEEEcCCCccCCCCCC------CCchhHHHHHHHHcCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWE-----FAKEKGLDVVVVNPGTVMGPVIPP------TLNASMLMLLRLLQGC 215 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~-----~~~~~~~~~~~~Rp~~v~G~~~~~------~~~~~~~~~~~~~~g~ 215 (323)
|+.||+..=...++ +.++.|+++..+.||.+-...... .......+..++ +.-
T Consensus 150 ---------------Y~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l-~~~ 213 (261)
T KOG4169|consen 150 ---------------YAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEAL-ERA 213 (261)
T ss_pred ---------------hhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHH-HHc
Confidence 99999865444443 234569999999999885431100 000001111111 111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCCCCccEEEEc
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPSACGRHLCVE 253 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~ 253 (323)
+ -....+++..++.+++.+..+..|.++.
T Consensus 214 ----~-----~q~~~~~a~~~v~aiE~~~NGaiw~v~~ 242 (261)
T KOG4169|consen 214 ----P-----KQSPACCAINIVNAIEYPKNGAIWKVDS 242 (261)
T ss_pred ----c-----cCCHHHHHHHHHHHHhhccCCcEEEEec
Confidence 1 2257999999999999987777788753
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=142.73 Aligned_cols=170 Identities=12% Similarity=0.058 Sum_probs=126.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+++||||++.||++++++|+++|++|+++.|+.+..+. ..+++...+.++..+.+|++|.++++++++
T Consensus 1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~--~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKD--TYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHH--HHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999987543222 222232223467788999999998876653
Q ss_pred ----CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHH----hhCC-cCEEEEecccccccCCCCCCCCc
Q 020608 77 ----GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAA----KALG-VKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
.+|++||+||...... ..+.+.+.+++|+.++..+++.+ ++.+ .+.+|++||.... ...
T Consensus 79 ~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~---~~~---- 151 (227)
T PRK08862 79 QFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH---QDL---- 151 (227)
T ss_pred HhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC---CCc----
Confidence 5899999997532211 22345567788888887776654 3332 4699999986321 111
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCC
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPV 196 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~ 196 (323)
..|+.+|.+.+.+.+.++.+ ++++++.+.||.+-++.
T Consensus 152 -----------------~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~ 191 (227)
T PRK08862 152 -----------------TGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANG 191 (227)
T ss_pred -----------------chhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCC
Confidence 33999999999999888776 48999999999998873
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=138.99 Aligned_cols=166 Identities=24% Similarity=0.272 Sum_probs=126.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHH-HHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETA-HLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
++++||||+|+||.+++++|+++|. .|+++.|++....... ....+...+.++.++.+|+++.++++++++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999996 6888888754332211 122232234567889999999988877654
Q ss_pred CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCCh
Q 020608 77 GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDE 152 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~ 152 (323)
.+|.|||+|+..... ...+.+...+++|+.++.++++++++.+.+++|++||.++.++....
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~~~~-------------- 146 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGNPGQ-------------- 146 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCCCCc--------------
Confidence 469999999965322 13356678899999999999999988777899999998766654321
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCcc
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVM 193 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~ 193 (323)
..|+.+|...+.+++.+. ..+++++.+.||.+-
T Consensus 147 -------~~y~~sk~~~~~~~~~~~-~~~~~~~~~~~g~~~ 179 (180)
T smart00822 147 -------ANYAAANAFLDALAAHRR-ARGLPATSINWGAWA 179 (180)
T ss_pred -------hhhHHHHHHHHHHHHHHH-hcCCceEEEeecccc
Confidence 339999999999996654 578999999988764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=142.98 Aligned_cols=185 Identities=14% Similarity=0.088 Sum_probs=136.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----CCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----GCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~V 81 (323)
|+++||||+|+||++++++|+++|++|+++.|+.++.. +..+.+ +++++.+|++|.++++++++ ++|++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~--~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~id~l 73 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLE--VAAKEL-----DVDAIVCDNTDPASLEEARGLFPHHLDTI 73 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHhc-----cCcEEecCCCCHHHHHHHHHHHhhcCcEE
Confidence 37999999999999999999999999999988642221 111221 35678999999999888765 58999
Q ss_pred EEcccCCcc---------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 82 FHLASPCIV---------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 82 ih~a~~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
||+|+.... ....+.+.+.+++|+.++.++++++... ..+++|++||.. ....
T Consensus 74 v~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~----~~~~------------ 137 (223)
T PRK05884 74 VNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN----PPAG------------ 137 (223)
T ss_pred EECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC----CCCc------------
Confidence 999984210 0123567889999999999999997542 236999999973 1110
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSV 227 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 227 (323)
..|+.+|.+.+.+++.++.+ +|++++.+.||.+..|... .. ... + ..
T Consensus 138 ---------~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~~-----------~~-~~~----p-----~~ 187 (223)
T PRK05884 138 ---------SAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGYD-----------GL-SRT----P-----PP 187 (223)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhhh-----------hc-cCC----C-----CC
Confidence 34999999999999988876 4899999999999765311 00 000 1 12
Q ss_pred cHHHHHHHHHHhhcCC
Q 020608 228 HFKDVALAHILVYENP 243 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~ 243 (323)
.++|+++++..++...
T Consensus 188 ~~~~ia~~~~~l~s~~ 203 (223)
T PRK05884 188 VAAEIARLALFLTTPA 203 (223)
T ss_pred CHHHHHHHHHHHcCch
Confidence 6899999999998753
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-18 Score=138.88 Aligned_cols=202 Identities=15% Similarity=0.119 Sum_probs=150.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
.+++.||||||++++|+.++.+|+++|..+++.+.+...... ..++..+.+ ++..+.+|++|++++.+..+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~e--tv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEE--TVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHH--HHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999888887654333 333333222 78999999999999887665
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
.+|++||+||...... +.+..+..+++|+.+.....++. .+.+-+++|.++|..+..+....
T Consensus 113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl--------- 183 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAGL--------- 183 (300)
T ss_pred CCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCccc---------
Confidence 5799999999875432 45566789999999988877775 44455799999999777665532
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh------CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE------KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~------~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|..||.++....+.+..+ .|++.+.+.|+.+-.... .+ ....+
T Consensus 184 ------------~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf---------------~~-~~~~~- 234 (300)
T KOG1201|consen 184 ------------ADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMF---------------DG-ATPFP- 234 (300)
T ss_pred ------------hhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecccccc---------------CC-CCCCc-
Confidence 33999999988777666544 278999999988864332 11 11111
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCC
Q 020608 222 FFMGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
..++.+.++.+|+.++.++...+.
T Consensus 235 ~l~P~L~p~~va~~Iv~ai~~n~~ 258 (300)
T KOG1201|consen 235 TLAPLLEPEYVAKRIVEAILTNQA 258 (300)
T ss_pred cccCCCCHHHHHHHHHHHHHcCCc
Confidence 124477899999999999986654
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-17 Score=139.46 Aligned_cols=215 Identities=10% Similarity=0.020 Sum_probs=142.0
Q ss_pred CCCCCceEEEecc--ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHH-HHhh--------ccCC--CCCeEEEEccC--
Q 020608 1 MSKEAEVVCVTGG--SGCIGSWLVSLLLERRYTVHATVKNLSDERETA-HLKA--------LEGA--DTRLRLFQIDL-- 65 (323)
Q Consensus 1 m~~~~~~vlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~--------~~~~--~~~~~~~~~Dl-- 65 (323)
|++++|++||||| +..||.++++.|++.|++|++ .|+.+..+... .... .... ......+.+|+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 5678999999999 899999999999999999988 66543322211 0100 0000 01135678888
Q ss_pred CCHh------------------HHHHHhc-------CCCEEEEcccCCc-----c-CCCCCchhhhhhHHHHHHHHHHHH
Q 020608 66 LDYD------------------AIAAAVT-------GCTGVFHLASPCI-----V-DKVEDPQNQLLNPAVKGTVNVLTA 114 (323)
Q Consensus 66 ~~~~------------------~~~~~~~-------~~d~Vih~a~~~~-----~-~~~~~~~~~~~~~n~~~~~~l~~~ 114 (323)
++.+ +++++++ ++|++|||||... . ..+.+.+...+++|+.++..++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 3322 5555443 5799999997432 1 124567889999999999999998
Q ss_pred HhhC--CcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEc
Q 020608 115 AKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVN 188 (323)
Q Consensus 115 ~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~R 188 (323)
+... .-.++|++||..+..+.+.. ...|+.+|.+.+.+.+.++.+ +|++++.|.
T Consensus 164 ~~p~m~~~G~II~isS~a~~~~~p~~--------------------~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~ 223 (303)
T PLN02730 164 FGPIMNPGGASISLTYIASERIIPGY--------------------GGGMSSAKAALESDTRVLAFEAGRKYKIRVNTIS 223 (303)
T ss_pred HHHHHhcCCEEEEEechhhcCCCCCC--------------------chhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEe
Confidence 7442 12699999998654433210 024999999999999988876 379999999
Q ss_pred CCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 189 PGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 189 p~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
||.+..+.... ............... +.+ .+..++|++.++++++...
T Consensus 224 PG~v~T~~~~~-~~~~~~~~~~~~~~~----pl~--r~~~peevA~~~~fLaS~~ 271 (303)
T PLN02730 224 AGPLGSRAAKA-IGFIDDMIEYSYANA----PLQ--KELTADEVGNAAAFLASPL 271 (303)
T ss_pred eCCccCchhhc-ccccHHHHHHHHhcC----CCC--CCcCHHHHHHHHHHHhCcc
Confidence 99998875432 111111111111111 111 2457999999999999743
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=138.22 Aligned_cols=200 Identities=20% Similarity=0.134 Sum_probs=138.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CCCE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GCTG 80 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~ 80 (323)
|+|+||||+|+||++++++|+++| ..|....|+.... . ...++.++.+|+++.++++++.+ ++|+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~--------~--~~~~~~~~~~Dls~~~~~~~~~~~~~~id~ 70 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD--------F--QHDNVQWHALDVTDEAEIKQLSEQFTQLDW 70 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc--------c--ccCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence 589999999999999999999985 5665555543211 1 12467889999999988776544 7899
Q ss_pred EEEcccCCccCC----------CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 81 VFHLASPCIVDK----------VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 81 Vih~a~~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
|||+||...... ..+.+...+++|+.++..+++.+.. .+.++++++||..+..... +
T Consensus 71 li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~~------~--- 141 (235)
T PRK09009 71 LINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISDN------R--- 141 (235)
T ss_pred EEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccccC------C---
Confidence 999999763211 1134567889999999988888743 2346899998752211100 0
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh-----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
.+ ....|+.+|+..+.+++.++.+ .++.++.+.||.+.++.... +.... +
T Consensus 142 -~~--------~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~-----------~~~~~----~- 196 (235)
T PRK09009 142 -LG--------GWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP-----------FQQNV----P- 196 (235)
T ss_pred -CC--------CcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc-----------hhhcc----c-
Confidence 00 0134999999999999988865 37899999999998875321 00111 1
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
...++.++|+|++++.++.... ..|.+.
T Consensus 197 -~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~ 226 (235)
T PRK09009 197 -KGKLFTPEYVAQCLLGIIANATPAQSGSFL 226 (235)
T ss_pred -cCCCCCHHHHHHHHHHHHHcCChhhCCcEE
Confidence 1125689999999999998653 345544
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-17 Score=143.40 Aligned_cols=226 Identities=17% Similarity=0.169 Sum_probs=142.6
Q ss_pred EEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CCCE
Q 020608 9 CVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GCTG 80 (323)
Q Consensus 9 lItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d~ 80 (323)
+||||+++||.+++++|+++| ++|+++.|+.... .+....+.....++.++.+|++|.++++++++ ++|+
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~--~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~ 78 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKA--ERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDV 78 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHH--HHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCE
Confidence 699999999999999999999 9999998864322 22333333223467889999999998877654 5799
Q ss_pred EEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHh----hCC--cCEEEEecccccccCCCC--CCCCc-----
Q 020608 81 VFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAK----ALG--VKRVVVTSSISSITPSPK--WPADK----- 142 (323)
Q Consensus 81 Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~~v~~SS~~~~~~~~~--~~~~~----- 142 (323)
+|||||..... .+.+.+...+++|+.++..+++.+. +.+ .+++|++||..+...... .++..
T Consensus 79 lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~ 158 (308)
T PLN00015 79 LVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 158 (308)
T ss_pred EEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhh
Confidence 99999974321 1345677899999999888877753 333 469999999855422110 00000
Q ss_pred --------------cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCCCccC-CCCCCCCch
Q 020608 143 --------------VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPGTVMG-PVIPPTLNA 203 (323)
Q Consensus 143 --------------~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~~v~G-~~~~~~~~~ 203 (323)
.+.+. ...+ ...|+.||++...+.+.++++ .|+.+++++||.|.. +...... .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~------~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~-~ 230 (308)
T PLN00015 159 RGLAGGLNGLNSSAMIDGG-EFDG------AKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHI-P 230 (308)
T ss_pred hhhhcccCCccchhhcccc-CCcH------HHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCcccccccc-H
Confidence 00000 0011 145999999977776777665 379999999999953 4322111 1
Q ss_pred hHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 204 SMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 204 ~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
............ +. ..+..+++.|..++.++.... ..|.|.
T Consensus 231 ~~~~~~~~~~~~----~~--~~~~~pe~~a~~~~~l~~~~~~~~~G~~~ 273 (308)
T PLN00015 231 LFRLLFPPFQKY----IT--KGYVSEEEAGKRLAQVVSDPSLTKSGVYW 273 (308)
T ss_pred HHHHHHHHHHHH----Hh--cccccHHHhhhhhhhhccccccCCCcccc
Confidence 111000000000 00 114578999999998876533 244543
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=137.66 Aligned_cols=153 Identities=22% Similarity=0.236 Sum_probs=120.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
|+++||||+|.||.+++++|+++| +.|+++.|+.+.....+....+...+.++.++++|+++.++++++++ .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999999995 57888888722222223334444445689999999999998887765 6
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChh
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE 153 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~ 153 (323)
+|+||||||...... ..+.+.+.+++|+.+...+.+++...+.+++|++||..+..+.+..
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~--------------- 145 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVRGSPGM--------------- 145 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTSSSTTB---------------
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhccCCCCC---------------
Confidence 799999999865322 2356678999999999999999877556799999999777655432
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHh
Q 020608 154 YCRQNEIWYPLSKTLAEKAAWEFAKE 179 (323)
Q Consensus 154 ~~~~~~~~Y~~sK~~~e~~~~~~~~~ 179 (323)
..|+.+|.+.+.+++.++++
T Consensus 146 ------~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 146 ------SAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHHHHHHHHh
Confidence 23999999999999998875
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-17 Score=138.44 Aligned_cols=217 Identities=20% Similarity=0.169 Sum_probs=159.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|||||||||+|++++++|+++|++|+++.|++....... .+++...+|+.+...+...++++|.++++.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~---------~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~ 71 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA---------GGVEVVLGDLRDPKSLVAGAKGVDGVLLIS 71 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc---------CCcEEEEeccCCHhHHHHHhccccEEEEEe
Confidence 58999999999999999999999999999999864433221 378899999999999999999999999998
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+... +. . ...........+..+.+. .++++++++|...+..... ..|..+
T Consensus 72 ~~~~-~~----~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~~~~~-----------------------~~~~~~ 121 (275)
T COG0702 72 GLLD-GS----D-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGADAASP-----------------------SALARA 121 (275)
T ss_pred cccc-cc----c-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCCCCCc-----------------------cHHHHH
Confidence 7632 11 1 123333445555555555 4467899988873222111 449999
Q ss_pred HHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 166 KTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 166 K~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
|..+|..+. ..|++.+++|+..+|....... .......+.+.. .+.+...++..+|++.++..++..+.
T Consensus 122 ~~~~e~~l~----~sg~~~t~lr~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~d~a~~~~~~l~~~~ 191 (275)
T COG0702 122 KAAVEAALR----SSGIPYTTLRRAAFYLGAGAAF------IEAAEAAGLPVIPRGIGRLSPIAVDDVAEALAAALDAPA 191 (275)
T ss_pred HHHHHHHHH----hcCCCeEEEecCeeeeccchhH------HHHHHhhCCceecCCCCceeeeEHHHHHHHHHHHhcCCc
Confidence 999999984 6799999999777766543211 223333444433 45556779999999999999998765
Q ss_pred CCc-cEEEE-cCccCHHHHHHHHHHHCCC
Q 020608 245 ACG-RHLCV-EAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 245 ~~~-~~~~~-~~~~~~~e~~~~i~~~~~~ 271 (323)
..+ .|.++ ++..+..++++.+....+.
T Consensus 192 ~~~~~~~l~g~~~~~~~~~~~~l~~~~gr 220 (275)
T COG0702 192 TAGRTYELAGPEALTLAELASGLDYTIGR 220 (275)
T ss_pred ccCcEEEccCCceecHHHHHHHHHHHhCC
Confidence 444 47775 5688999999999998865
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-17 Score=127.38 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=128.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++.+.+||||||+.+||.+|+++|.+.|.+|++.+|+.. .+.+.....+.+....+|+.|.+++.++++
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~------~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk 74 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEE------RLAEAKAENPEIHTEVCDVADRDSRRELVEWLKK 74 (245)
T ss_pred CcccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHH------HHHHHHhcCcchheeeecccchhhHHHHHHHHHh
Confidence 7788899999999999999999999999999999999742 222222224678889999999987776654
Q ss_pred ---CCCEEEEcccCCcc------CCCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIV------DKVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
..+++|||||+... +...++..+.+++|+.++.+|..+... +.-.-+|.+||.-+.-+....|.
T Consensus 75 ~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~~Pv--- 151 (245)
T COG3967 75 EYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPV--- 151 (245)
T ss_pred hCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCccccccc---
Confidence 46999999998632 123344567888999999998888643 33348999999876665543322
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCC
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGP 195 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~ 195 (323)
|..+|++...+...+.++ .++.+.=+-|+.|-.+
T Consensus 152 ------------------YcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 152 ------------------YCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred ------------------chhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 999999888776666554 3788888899999886
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=136.02 Aligned_cols=223 Identities=19% Similarity=0.143 Sum_probs=153.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc--CCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE--GADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+.+++++|||||.+||.+++++|+.+|.+|+...|+.... .+..+++. .....+.++.+|+.+.+++.++.+
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~--~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERG--EEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHH--HHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999986322 23333333 334578889999999988877654
Q ss_pred ---CCCEEEEcccCCccCC--CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 ---GCTGVFHLASPCIVDK--VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
..|++|++||....+. +.+..+..+.+|..|...|.+.. +.....|+|++||... ..... ....-.|.
T Consensus 111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~--~~~l~~~~ 187 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKID--LKDLSGEK 187 (314)
T ss_pred cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccc--hhhccchh
Confidence 5699999999886654 55678999999999999888886 3333369999999844 11111 01112221
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..... ....|+.||.+.......++++. |+.+..+.||.+.++.... .......+.+......
T Consensus 188 ~~~~~-----~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r-~~~~~~~l~~~l~~~~--------- 252 (314)
T KOG1208|consen 188 AKLYS-----SDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSR-VNLLLRLLAKKLSWPL--------- 252 (314)
T ss_pred ccCcc-----chhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccceec-chHHHHHHHHHHHHHh---------
Confidence 11000 01249999999888888887765 6999999999999985432 2222222222221110
Q ss_pred cccHHHHHHHHHHhhcCCCC
Q 020608 226 SVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~~ 245 (323)
+-..++-|..++.++.+++.
T Consensus 253 ~ks~~~ga~t~~~~a~~p~~ 272 (314)
T KOG1208|consen 253 TKSPEQGAATTCYAALSPEL 272 (314)
T ss_pred ccCHHHHhhheehhccCccc
Confidence 11467788888888877653
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=122.15 Aligned_cols=210 Identities=19% Similarity=0.151 Sum_probs=147.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
+.|..+||||+..||++++..|+..|++|.+.+++.. ...+....++.. .+-..+.||+.+.++.+..++
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~--~A~ata~~L~g~-~~h~aF~~DVS~a~~v~~~l~e~~k~~g 89 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSA--AAEATAGDLGGY-GDHSAFSCDVSKAHDVQNTLEEMEKSLG 89 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchh--hHHHHHhhcCCC-CccceeeeccCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999988653 333444455442 234568999999888776554
Q ss_pred CCCEEEEcccCCcc----CCCCCchhhhhhHHHHHHHHHHHHHhhC------CcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 GCTGVFHLASPCIV----DKVEDPQNQLLNPAVKGTVNVLTAAKAL------GVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 ~~d~Vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.++++++|||+... ....++|...+.+|+.|+..+.+++.+. +..++|++||+-...++-+...
T Consensus 90 ~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQtn------ 163 (256)
T KOG1200|consen 90 TPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTN------ 163 (256)
T ss_pred CCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccchh------
Confidence 57999999998632 2367789999999999999999987432 2239999999855555443211
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
|...+...-|.+|.++.++. ..++++.++-||++-.|.... .+.....++...-|.. + +
T Consensus 164 -------YAAsK~GvIgftktaArEla-----~knIrvN~VlPGFI~tpMT~~---mp~~v~~ki~~~iPmg----r--~ 222 (256)
T KOG1200|consen 164 -------YAASKGGVIGFTKTAARELA-----RKNIRVNVVLPGFIATPMTEA---MPPKVLDKILGMIPMG----R--L 222 (256)
T ss_pred -------hhhhcCceeeeeHHHHHHHh-----hcCceEeEeccccccChhhhh---cCHHHHHHHHccCCcc----c--c
Confidence 33333334455555555544 468999999999999997532 2233455554433221 1 3
Q ss_pred ccHHHHHHHHHHhhcCC
Q 020608 227 VHFKDVALAHILVYENP 243 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~ 243 (323)
-..+|+|..++.++...
T Consensus 223 G~~EevA~~V~fLAS~~ 239 (256)
T KOG1200|consen 223 GEAEEVANLVLFLASDA 239 (256)
T ss_pred CCHHHHHHHHHHHhccc
Confidence 36899999999988543
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=121.56 Aligned_cols=202 Identities=22% Similarity=0.256 Sum_probs=146.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|||.|+||||-+|+++++++..+||+|+++.|++++... .+++..++.|+.|++.+.+.+.+.|+||..-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~----------~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~ 70 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA----------RQGVTILQKDIFDLTSLASDLAGHDAVISAF 70 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc----------cccceeecccccChhhhHhhhcCCceEEEec
Confidence 689999999999999999999999999999998643221 1367889999999999999999999999876
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+... ..+... .......+++..+..++.|++.++..++.+-.++ ...++-..++. ..|...
T Consensus 71 ~~~~----~~~~~~----~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g---~rLvD~p~fP~--------ey~~~A 131 (211)
T COG2910 71 GAGA----SDNDEL----HSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG---TRLVDTPDFPA--------EYKPEA 131 (211)
T ss_pred cCCC----CChhHH----HHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC---ceeecCCCCch--------hHHHHH
Confidence 5421 111111 1334667888888889999999999988887653 22222222222 237778
Q ss_pred HHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 166 KTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 166 K~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
+..+|.+ ..+..+.+++|+.+-|+..+-|+.+.+. ...|+... .....-++|..+|-|.+++.-++++.
T Consensus 132 ~~~ae~L-~~Lr~~~~l~WTfvSPaa~f~PGerTg~---------yrlggD~ll~n~~G~SrIS~aDYAiA~lDe~E~~~ 201 (211)
T COG2910 132 LAQAEFL-DSLRAEKSLDWTFVSPAAFFEPGERTGN---------YRLGGDQLLVNAKGESRISYADYAIAVLDELEKPQ 201 (211)
T ss_pred HHHHHHH-HHHhhccCcceEEeCcHHhcCCccccCc---------eEeccceEEEcCCCceeeeHHHHHHHHHHHHhccc
Confidence 8887744 4444456799999999999999876542 12333322 23333458999999999999999876
Q ss_pred CC
Q 020608 245 AC 246 (323)
Q Consensus 245 ~~ 246 (323)
-.
T Consensus 202 h~ 203 (211)
T COG2910 202 HI 203 (211)
T ss_pred cc
Confidence 53
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-16 Score=130.40 Aligned_cols=174 Identities=23% Similarity=0.244 Sum_probs=127.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcH--HHHHHHhhccCCC-CCeEEEEccCCC-HhHHHHHhc
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE--RETAHLKALEGAD-TRLRLFQIDLLD-YDAIAAAVT 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~-~~~~~~~~Dl~~-~~~~~~~~~ 76 (323)
|.+++|++|||||++.||.++++.|+++|++|+++.|+.... ........ ... ....+..+|+++ .++++.+++
T Consensus 1 ~~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~ 78 (251)
T COG1028 1 MDLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVA 78 (251)
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHH
Confidence 567899999999999999999999999999998888875431 11111111 111 257778899998 877766554
Q ss_pred -------CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCcc
Q 020608 77 -------GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 -------~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|++||+||.... ....+.+...+++|+.+...+.+++...- .+++|++||..+. .....
T Consensus 79 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~~----- 152 (251)
T COG1028 79 AAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPPG----- 152 (251)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCCC-----
Confidence 48999999997532 12446788999999999999988543221 1299999999655 43321
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCC
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVI 197 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~ 197 (323)
...|+.||.+.+.+.+.++.+ +|+.++.+.||.+-.+..
T Consensus 153 ---------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~~ 194 (251)
T COG1028 153 ---------------QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPMT 194 (251)
T ss_pred ---------------cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcch
Confidence 034999999999998888855 589999999997765543
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-17 Score=123.37 Aligned_cols=208 Identities=19% Similarity=0.138 Sum_probs=152.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhc---CC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVT---GC 78 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---~~ 78 (323)
+.++.|++||+.-.||+.++..|++.|.+|+++.|++.+ +.++-. ....++.+.+|+.+.+.+.+++. .+
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~------L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pi 78 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEAN------LLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPI 78 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHH------HHHHHhhCCcceeeeEecccHHHHHHHhhcccCch
Confidence 468899999999999999999999999999999997532 222222 22348899999999998888877 35
Q ss_pred CEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh-----CCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 79 TGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA-----LGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 79 d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
|.++|+||...... ..++++..|++|+.+..++.+...+ ...+.+|++||.++..+...
T Consensus 79 dgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~n------------ 146 (245)
T KOG1207|consen 79 DGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDN------------ 146 (245)
T ss_pred hhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCC------------
Confidence 99999999763322 5667888999999999999888432 22347999999976655432
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
++.|..+|.+.+.+.+.++.+. ++++..+.|..|.....+.. ...+..-..+... .|.. .|
T Consensus 147 ---------HtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dn-WSDP~K~k~mL~r----iPl~--rF 210 (245)
T KOG1207|consen 147 ---------HTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDN-WSDPDKKKKMLDR----IPLK--RF 210 (245)
T ss_pred ---------ceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccc-cCCchhccchhhh----Cchh--hh
Confidence 2559999999999999998886 58999999999987643321 1111101111111 1211 26
Q ss_pred ccHHHHHHHHHHhhcCCC
Q 020608 227 VHFKDVALAHILVYENPS 244 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~ 244 (323)
.-+++++.++..++....
T Consensus 211 aEV~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 211 AEVDEVVNAVLFLLSDNS 228 (245)
T ss_pred hHHHHHHhhheeeeecCc
Confidence 789999999999987654
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=125.66 Aligned_cols=208 Identities=19% Similarity=0.201 Sum_probs=150.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 78 (323)
.+|+||||+..||..++.++..+|++|+++.|+..+.....+..++.....++.+..+|+.|.++.+..++ .+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~ 113 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI 113 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence 48999999999999999999999999999999865544433333333323347799999999998887766 35
Q ss_pred CEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC----C-cCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 79 TGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL----G-VKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 79 d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
|.+|||||...... +....+..+++|..|+.+++.++... . .++|+.+||..+.++-.+..
T Consensus 114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~Gys---------- 183 (331)
T KOG1210|consen 114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYGYS---------- 183 (331)
T ss_pred ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCccccc----------
Confidence 99999999864432 33456788999999999999996321 1 34999999998877766543
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
.|..+|.+...++....++ +++.++..-|+.+..|+........+ ...++..|. -+.
T Consensus 184 -----------aYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tkP-~~t~ii~g~--------ss~ 243 (331)
T KOG1210|consen 184 -----------AYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKTKP-EETKIIEGG--------SSV 243 (331)
T ss_pred -----------ccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccccccCc-hheeeecCC--------CCC
Confidence 3888888877777666655 58999999999999997432211111 111222222 223
Q ss_pred ccHHHHHHHHHHhhcCC
Q 020608 227 VHFKDVALAHILVYENP 243 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~ 243 (323)
+..+++|++++.=+.+.
T Consensus 244 ~~~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 244 IKCEEMAKAIVKGMKRG 260 (331)
T ss_pred cCHHHHHHHHHhHHhhc
Confidence 67899999999776654
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=125.24 Aligned_cols=163 Identities=28% Similarity=0.347 Sum_probs=120.4
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC-EEEEEecC-CCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY-TVHATVKN-LSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+++||||+|.||..+++.|+++|. +|+++.|+ ............+...+.+++++.+|++|++++.++++ .
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 689999999999999999999985 89999998 33334445555555556789999999999999999876 3
Q ss_pred CCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChh
Q 020608 78 CTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE 153 (323)
Q Consensus 78 ~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~ 153 (323)
++.|||+|+..... .+.+.....+...+.++.+|.++......+.||.+||.++..+..+.
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~gq--------------- 146 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGPGQ--------------- 146 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-TTB---------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCcch---------------
Confidence 58999999975322 13445677788899999999999988889999999999888777642
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCC
Q 020608 154 YCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGT 191 (323)
Q Consensus 154 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~ 191 (323)
..|+......+.++.... ..|.++.+|..+.
T Consensus 147 ------~~YaaAN~~lda~a~~~~-~~g~~~~sI~wg~ 177 (181)
T PF08659_consen 147 ------SAYAAANAFLDALARQRR-SRGLPAVSINWGA 177 (181)
T ss_dssp ------HHHHHHHHHHHHHHHHHH-HTTSEEEEEEE-E
T ss_pred ------HhHHHHHHHHHHHHHHHH-hCCCCEEEEEccc
Confidence 349999999999888765 4689988887554
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=130.62 Aligned_cols=213 Identities=10% Similarity=0.006 Sum_probs=132.7
Q ss_pred CCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCC------c--HHHHH--------------HHhhccCCCCCe
Q 020608 3 KEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLS------D--ERETA--------------HLKALEGADTRL 58 (323)
Q Consensus 3 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~------~--~~~~~--------------~~~~~~~~~~~~ 58 (323)
+++|+++||||+ ..||+++++.|+++|++|++..|.+. . ..... ....+...-...
T Consensus 6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~ 85 (299)
T PRK06300 6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTP 85 (299)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCC
Confidence 578999999995 89999999999999999998654310 0 00000 000000000112
Q ss_pred EEEEccCCCH--------hHHHHHh-------cCCCEEEEcccCCc--c----CCCCCchhhhhhHHHHHHHHHHHHHhh
Q 020608 59 RLFQIDLLDY--------DAIAAAV-------TGCTGVFHLASPCI--V----DKVEDPQNQLLNPAVKGTVNVLTAAKA 117 (323)
Q Consensus 59 ~~~~~Dl~~~--------~~~~~~~-------~~~d~Vih~a~~~~--~----~~~~~~~~~~~~~n~~~~~~l~~~~~~ 117 (323)
+-+..|+++. +++++++ .++|++|||||... . ..+.+.+...+++|+.++.++++++..
T Consensus 86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p 165 (299)
T PRK06300 86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP 165 (299)
T ss_pred EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2233333331 1234333 36899999997532 1 124567888999999999999999754
Q ss_pred C--CcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCCC
Q 020608 118 L--GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPGT 191 (323)
Q Consensus 118 ~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~~ 191 (323)
. .-+++|++||..+..+.+... ..|+.+|.+.+.+.+.++.+ +|++++.|.||.
T Consensus 166 ~m~~~G~ii~iss~~~~~~~p~~~--------------------~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~ 225 (299)
T PRK06300 166 IMNPGGSTISLTYLASMRAVPGYG--------------------GGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGP 225 (299)
T ss_pred HhhcCCeEEEEeehhhcCcCCCcc--------------------HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 2 125899999875544332110 14999999999999888865 379999999999
Q ss_pred ccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 192 VMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 192 v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
+..+....... ............ +. ..+..++|++.++.+++..
T Consensus 226 v~T~~~~~~~~-~~~~~~~~~~~~----p~--~r~~~peevA~~v~~L~s~ 269 (299)
T PRK06300 226 LASRAGKAIGF-IERMVDYYQDWA----PL--PEPMEAEQVGAAAAFLVSP 269 (299)
T ss_pred ccChhhhcccc-cHHHHHHHHhcC----CC--CCCcCHHHHHHHHHHHhCc
Confidence 98875321100 011111111111 11 1245789999999999875
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=124.97 Aligned_cols=166 Identities=23% Similarity=0.244 Sum_probs=128.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
..|-|||||+-...|+.||.+|.++|+.|++-...++..+....... .++...+..|++++++++++.+
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~----s~rl~t~~LDVT~~esi~~a~~~V~~~l~ 103 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK----SPRLRTLQLDVTKPESVKEAAQWVKKHLG 103 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc----CCcceeEeeccCCHHHHHHHHHHHHHhcc
Confidence 56789999999999999999999999999998855444333222211 4688889999999999998765
Q ss_pred --CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 --GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
+.-.||||||...... ..+++.+.+++|+.|+.++..+. ++.. +|+|++||.++-.+.+..
T Consensus 104 ~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar-GRvVnvsS~~GR~~~p~~------- 175 (322)
T KOG1610|consen 104 EDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR-GRVVNVSSVLGRVALPAL------- 175 (322)
T ss_pred cccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-CeEEEecccccCccCccc-------
Confidence 3468999999653321 45678899999999999999986 3333 699999999653333211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGP 195 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~ 195 (323)
.+|..||.+.|.+...+.++ +|+++.++-||..-.+
T Consensus 176 --------------g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~ 214 (322)
T KOG1610|consen 176 --------------GPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTN 214 (322)
T ss_pred --------------ccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccc
Confidence 45999999999998887766 5999999999955444
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-15 Score=117.26 Aligned_cols=196 Identities=17% Similarity=0.148 Sum_probs=135.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecC-CCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKN-LSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|..+.|+||||+.+||-.|+++|++. |.++++..|+ ++.+ .+.++.....++++++++.|+++.+++..+.+
T Consensus 1 Mspksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a--~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~ 78 (249)
T KOG1611|consen 1 MSPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA--ATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEK 78 (249)
T ss_pred CCCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh--hHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHh
Confidence 35688999999999999999999976 6666555543 4332 22222222346799999999999988877654
Q ss_pred -----CCCEEEEcccCCcc-C----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcC-----------EEEEeccccc
Q 020608 77 -----GCTGVFHLASPCIV-D----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVK-----------RVVVTSSISS 131 (323)
Q Consensus 77 -----~~d~Vih~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~-----------~~v~~SS~~~ 131 (323)
+.+.+|++||.... . .....+...+++|+.++..+.+++ ++...+ .+|++||.++
T Consensus 79 iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~ 158 (249)
T KOG1611|consen 79 IVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAG 158 (249)
T ss_pred hcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeecccc
Confidence 56999999997632 1 123347789999999998888876 222222 7888988744
Q ss_pred ccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHH
Q 020608 132 ITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLML 208 (323)
Q Consensus 132 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~ 208 (323)
-.+.. .......|..||.+.....+..+-+. ++-++.+.||+|-......
T Consensus 159 s~~~~------------------~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg~--------- 211 (249)
T KOG1611|consen 159 SIGGF------------------RPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGGK--------- 211 (249)
T ss_pred ccCCC------------------CCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCCC---------
Confidence 31110 00112569999999999888877554 6788889999998754321
Q ss_pred HHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 209 LRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 209 ~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
-..+.+++-++-++..+.+
T Consensus 212 ---------------~a~ltveeSts~l~~~i~k 230 (249)
T KOG1611|consen 212 ---------------KAALTVEESTSKLLASINK 230 (249)
T ss_pred ---------------CcccchhhhHHHHHHHHHh
Confidence 1134577777777776654
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=131.44 Aligned_cols=212 Identities=22% Similarity=0.205 Sum_probs=144.6
Q ss_pred ccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh--------cCCCEE
Q 020608 12 GGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV--------TGCTGV 81 (323)
Q Consensus 12 Gat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--------~~~d~V 81 (323)
|++ +.||++++++|+++|++|++++|+..+. ...++.+.... +..++.+|+++.+++++++ .++|++
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~--~~~~~~l~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l 77 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKL--ADALEELAKEY-GAEVIQCDLSDEESVEALFDEAVERFGGRIDIL 77 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHH--HHHHHHHHHHT-TSEEEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHH--HHHHHHHHHHc-CCceEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence 666 9999999999999999999999975431 12222222111 2346999999999888764 467999
Q ss_pred EEcccCCcc----CC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCCCC
Q 020608 82 FHLASPCIV----DK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCWTD 151 (323)
Q Consensus 82 ih~a~~~~~----~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~ 151 (323)
||+++.... .. +.+.+...+++|+.+...+++++.+. .-+++|++||.+...+.+..
T Consensus 78 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~~~------------- 144 (241)
T PF13561_consen 78 VNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMPGY------------- 144 (241)
T ss_dssp EEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBSTTT-------------
T ss_pred EecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCccc-------------
Confidence 999987643 11 23567889999999999999998442 12589999998554443221
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcc
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSV 227 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 227 (323)
..|+.+|.+.+.+++.++.+ +|+++++|.||.+..+.... ...............|. + .+.
T Consensus 145 --------~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~-~~~~~~~~~~~~~~~pl----~--r~~ 209 (241)
T PF13561_consen 145 --------SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER-IPGNEEFLEELKKRIPL----G--RLG 209 (241)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH-HHTHHHHHHHHHHHSTT----S--SHB
T ss_pred --------hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc-cccccchhhhhhhhhcc----C--CCc
Confidence 34999999999988887655 47999999999998764210 00011222222222211 1 145
Q ss_pred cHHHHHHHHHHhhcCC--CCCccEEEEcC
Q 020608 228 HFKDVALAHILVYENP--SACGRHLCVEA 254 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~--~~~~~~~~~~~ 254 (323)
.++|+|.++..|+... .-.|+.+..+.
T Consensus 210 ~~~evA~~v~fL~s~~a~~itG~~i~vDG 238 (241)
T PF13561_consen 210 TPEEVANAVLFLASDAASYITGQVIPVDG 238 (241)
T ss_dssp EHHHHHHHHHHHHSGGGTTGTSEEEEEST
T ss_pred CHHHHHHHHHHHhCccccCccCCeEEECC
Confidence 7999999999999865 23566554443
|
... |
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=125.80 Aligned_cols=274 Identities=15% Similarity=0.143 Sum_probs=173.0
Q ss_pred CceEEEeccccHHHHHHHH-----HHHHCC----CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh
Q 020608 5 AEVVCVTGGSGCIGSWLVS-----LLLERR----YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~-----~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
..+.++-+++|+|+..|.- ++-+.+ |+|+++.|.+.+.. +++.+.|..-..
T Consensus 12 sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~r--------------itw~el~~~Gip------ 71 (315)
T KOG3019|consen 12 SRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKAR--------------ITWPELDFPGIP------ 71 (315)
T ss_pred cccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCcc--------------cccchhcCCCCc------
Confidence 3567888999999988876 333334 89999999875432 222222211100
Q ss_pred cCCCEEEEcccCCc----cCCCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 76 TGCTGVFHLASPCI----VDKVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 76 ~~~d~Vih~a~~~~----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
-.|+.+++.++... ..-+..-..+.....+..+..+.++....- .+.+|.+|..+.|.+.. ...++|+.+
T Consensus 72 ~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~----s~eY~e~~~ 147 (315)
T KOG3019|consen 72 ISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSE----SQEYSEKIV 147 (315)
T ss_pred eehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccc----ccccccccc
Confidence 02233333333221 111222223333444556778888876553 45899999884444433 456777766
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHH-HhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCccc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFA-KEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVH 228 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~-~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 228 (323)
... +.....++-++-..+. ....++++++|.|.|.|.+.. ....+...-++..|.|...|.+.++|||
T Consensus 148 ~qg---------fd~~srL~l~WE~aA~~~~~~~r~~~iR~GvVlG~gGG--a~~~M~lpF~~g~GGPlGsG~Q~fpWIH 216 (315)
T KOG3019|consen 148 HQG---------FDILSRLCLEWEGAALKANKDVRVALIRIGVVLGKGGG--ALAMMILPFQMGAGGPLGSGQQWFPWIH 216 (315)
T ss_pred cCC---------hHHHHHHHHHHHHHhhccCcceeEEEEEEeEEEecCCc--chhhhhhhhhhccCCcCCCCCeeeeeee
Confidence 543 3333332222221111 112689999999999998643 2222233456778888888999999999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCC---CCCCCCCCCCCCC-------ccccccchhHhh
Q 020608 229 FKDVALAHILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEY---DIPRLPKDTQPGL-------LRTKDGAKKLMD 297 (323)
Q Consensus 229 v~D~a~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~ 297 (323)
++|++..+-.+++++...|+.|. .+++++..|+++.+.+.++.. ++|.+........ ....+-..|+.+
T Consensus 217 v~DL~~li~~ale~~~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGqKV~Pqral~ 296 (315)
T KOG3019|consen 217 VDDLVNLIYEALENPSVKGVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQKVLPQRALE 296 (315)
T ss_pred hHHHHHHHHHHHhcCCCCceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCCcccchhHhh
Confidence 99999999999999989999885 689999999999999998642 4443322111111 123445567788
Q ss_pred hCCcc--cCHHHHHHHHH
Q 020608 298 LGLQF--IPMDQIIKDSV 313 (323)
Q Consensus 298 lG~~~--~~~~~~l~~~~ 313 (323)
+||++ ..+++++++++
T Consensus 297 ~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 297 LGFEFKYPYVKDALRAIM 314 (315)
T ss_pred cCceeechHHHHHHHHHh
Confidence 99998 67899998865
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-15 Score=125.82 Aligned_cols=195 Identities=17% Similarity=0.064 Sum_probs=128.7
Q ss_pred HHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----CCCEEEEcccCCccCCCCCc
Q 020608 21 LVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----GCTGVFHLASPCIVDKVEDP 96 (323)
Q Consensus 21 l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~Vih~a~~~~~~~~~~~ 96 (323)
++++|+++|++|++++|+..+.. ..+++.+|++|.++++++++ ++|+|||+||... ..+
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~-------------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~ 63 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT-------------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAP 63 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh-------------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCC
Confidence 47899999999999999754321 12457899999999888876 5899999998742 346
Q ss_pred hhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCC----CCCChh------hhccCCCchHH
Q 020608 97 QNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDED----CWTDEE------YCRQNEIWYPL 164 (323)
Q Consensus 97 ~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~----~~~~~~------~~~~~~~~Y~~ 164 (323)
+...+++|+.++..+++++... ..++||++||.+++.... ..+..|. ...... .+......|+.
T Consensus 64 ~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 139 (241)
T PRK12428 64 VELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQ----RLELHKALAATASFDEGAAWLAAHPVALATGYQL 139 (241)
T ss_pred HHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhcccc----chHHHHhhhccchHHHHHHhhhccCCCcccHHHH
Confidence 7889999999999999998653 236999999996653211 1111110 000000 00011256999
Q ss_pred HHHHHHHHHHHHH-H---hCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhh
Q 020608 165 SKTLAEKAAWEFA-K---EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 165 sK~~~e~~~~~~~-~---~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~ 240 (323)
+|.+.+.+.+.++ . .+|+++++++||.+.++.......... ...... . ..+. ..+..++|+|+++..++
T Consensus 140 sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~--~~~~~~-~--~~~~--~~~~~pe~va~~~~~l~ 212 (241)
T PRK12428 140 SKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLG--QERVDS-D--AKRM--GRPATADEQAAVLVFLC 212 (241)
T ss_pred HHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhh--hHhhhh-c--cccc--CCCCCHHHHHHHHHHHc
Confidence 9999999988887 3 358999999999999986432110000 000001 0 0111 12567999999999988
Q ss_pred cCC
Q 020608 241 ENP 243 (323)
Q Consensus 241 ~~~ 243 (323)
...
T Consensus 213 s~~ 215 (241)
T PRK12428 213 SDA 215 (241)
T ss_pred Chh
Confidence 643
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=156.81 Aligned_cols=173 Identities=21% Similarity=0.210 Sum_probs=135.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcH----------------------------------------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDE---------------------------------------- 42 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~---------------------------------------- 42 (323)
+++++|||||+|+||..++++|+++ |.+|++++|++...
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 4689999999999999999999998 69999999983100
Q ss_pred -----HHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------CCCEEEEcccCCccC----CCCCchhhhhhHHHHH
Q 020608 43 -----RETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKG 107 (323)
Q Consensus 43 -----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~ 107 (323)
+....+..+...+.++.++.+|++|.++++++++ ++|.|||+||..... .+.+.+...+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 0001112222334578899999999998887765 489999999975322 2456788899999999
Q ss_pred HHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-CccEEE
Q 020608 108 TVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-GLDVVV 186 (323)
Q Consensus 108 ~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~ 186 (323)
+.++++++.....++||++||..+.++..+. ..|+.+|...+.+.+.++.+. +++++.
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~G~~gq---------------------s~YaaAkaaL~~la~~la~~~~~irV~s 2214 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFYGNTGQ---------------------SDYAMSNDILNKAALQLKALNPSAKVMS 2214 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcCCCCCc---------------------HHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 9999999877666799999999887776542 339999999999988887766 789999
Q ss_pred EcCCCccCCCC
Q 020608 187 VNPGTVMGPVI 197 (323)
Q Consensus 187 ~Rp~~v~G~~~ 197 (323)
+.||.+-|+..
T Consensus 2215 I~wG~wdtgm~ 2225 (2582)
T TIGR02813 2215 FNWGPWDGGMV 2225 (2582)
T ss_pred EECCeecCCcc
Confidence 99999887653
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=118.35 Aligned_cols=164 Identities=21% Similarity=0.233 Sum_probs=123.3
Q ss_pred CCceEEEecc-ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 4 EAEVVCVTGG-SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 4 ~~~~vlItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+.|+|||||+ .|+||.+|+++|.++|+.|++..|+.+.-..... ..++..+..|+++++.+.....
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~-------~~gl~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI-------QFGLKPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH-------hhCCeeEEeccCChHHHHHHHHHHhhCC
Confidence 4578999886 5999999999999999999999997654332221 1267889999999988776543
Q ss_pred --CCCEEEEcccCCcc-CC---CCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIV-DK---VEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~-~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
..|+++|+||.... +. .....++.+++|+.|..++.++.... ..+.+|++.|..++-+.+-
T Consensus 79 ~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf---------- 148 (289)
T KOG1209|consen 79 DGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPF---------- 148 (289)
T ss_pred CCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccch----------
Confidence 46999999997633 22 33455789999999999998886432 1359999999966655432
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGP 195 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~ 195 (323)
.+.|..||++...+.+.+.-+ +|++++.+-+|.|-..
T Consensus 149 -----------~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~ 188 (289)
T KOG1209|consen 149 -----------GSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATD 188 (289)
T ss_pred -----------hhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceecc
Confidence 145999999988887766544 4888988888888654
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=106.27 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=120.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|+||.+||.||||-.|+.|++++++.+ .+|+++.|+...... .+..+.....|....+++...+++.|+
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a---------t~k~v~q~~vDf~Kl~~~a~~~qg~dV 86 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA---------TDKVVAQVEVDFSKLSQLATNEQGPDV 86 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc---------ccceeeeEEechHHHHHHHhhhcCCce
Confidence 578999999999999999999999997 489999987422111 123566778999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
.|.+-|-.... ...+..+++.-.-.+.+.++|++.|+++|+.+||.++..... -
T Consensus 87 ~FcaLgTTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSr-----------------------F 140 (238)
T KOG4039|consen 87 LFCALGTTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSR-----------------------F 140 (238)
T ss_pred EEEeecccccc---cccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccc-----------------------e
Confidence 99887754321 223445666677788899999999999999999985432221 3
Q ss_pred chHHHHHHHHHHHHHHHHhCCc-cEEEEcCCCccCCCCC
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGL-DVVVVNPGTVMGPVIP 198 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~-~~~~~Rp~~v~G~~~~ 198 (323)
.|-..|...|+-+.. ..+ +++|+|||.+.|....
T Consensus 141 lY~k~KGEvE~~v~e----L~F~~~~i~RPG~ll~~R~e 175 (238)
T KOG4039|consen 141 LYMKMKGEVERDVIE----LDFKHIIILRPGPLLGERTE 175 (238)
T ss_pred eeeeccchhhhhhhh----ccccEEEEecCcceeccccc
Confidence 388899998887643 333 7888999999997543
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=108.38 Aligned_cols=217 Identities=18% Similarity=0.114 Sum_probs=150.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
..+++.|+.||.|+++++.....++.|..+.|+..+... ..+...+.++.+|.-..+-....+.+...++-++
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~l-------~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ 125 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQTL-------SSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMM 125 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcchh-------hCCCcccchhhccccccCcchhhhcCCcccHHHh
Confidence 357899999999999999999999999999988642221 1223456777888766665666677888888888
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+. ..+...+..+|-....+...++.+.|+++|+|+|-. .++..... .+.|-.+
T Consensus 126 gg------fgn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~--d~~~~~~i-------------------~rGY~~g 178 (283)
T KOG4288|consen 126 GG------FGNIILMDRINGTANINAVKAAAKAGVPRFVYISAH--DFGLPPLI-------------------PRGYIEG 178 (283)
T ss_pred cC------ccchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhh--hcCCCCcc-------------------chhhhcc
Confidence 65 344556777888888899999999999999999965 23222110 1459999
Q ss_pred HHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhH----HHHHHHHcCC------CCCccCcCCCcccHHHHHHH
Q 020608 166 KTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASM----LMLLRLLQGC------TDTYENFFMGSVHFKDVALA 235 (323)
Q Consensus 166 K~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~----~~~~~~~~g~------~~~~~~~~~~~i~v~D~a~~ 235 (323)
|+++|..+... ++.+-+++|||.+||...-.....+. ..+....++. ....+.-..+.+.+++||.+
T Consensus 179 KR~AE~Ell~~---~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~a 255 (283)
T KOG4288|consen 179 KREAEAELLKK---FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALA 255 (283)
T ss_pred chHHHHHHHHh---cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHH
Confidence 99999887654 45788899999999973222221111 1222222222 11244555668999999999
Q ss_pred HHHhhcCCCCCccEEEEcCccCHHHHHHHHH
Q 020608 236 HILVYENPSACGRHLCVEAISHYGDFVAKVA 266 (323)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~ 266 (323)
.+.+++++.-.| .+++.|+.++-.
T Consensus 256 al~ai~dp~f~G-------vv~i~eI~~~a~ 279 (283)
T KOG4288|consen 256 ALKAIEDPDFKG-------VVTIEEIKKAAH 279 (283)
T ss_pred HHHhccCCCcCc-------eeeHHHHHHHHH
Confidence 999999886543 345555555443
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=114.86 Aligned_cols=212 Identities=22% Similarity=0.139 Sum_probs=131.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhH-HHHHhcC----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDA-IAAAVTG---- 77 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~---- 77 (323)
+++++|||+||||.+|+-+++.|+++|+.|.++.|+..+...... ....+.....+..|.....+ +..+...
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~---~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~ 153 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG---VFFVDLGLQNVEADVVTAIDILKKLVEAVPKG 153 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc---ccccccccceeeeccccccchhhhhhhhcccc
Confidence 356789999999999999999999999999999998654443222 12223355556666554333 3333332
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhcc
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQ 157 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 157 (323)
..+++-+++-... .+ +...-..+...|+.|++++|+..|++|++++||++.-..+... ++...
T Consensus 154 ~~~v~~~~ggrp~--~e-d~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~~~----~~~~~---------- 216 (411)
T KOG1203|consen 154 VVIVIKGAGGRPE--EE-DIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQPP----NILLL---------- 216 (411)
T ss_pred ceeEEecccCCCC--cc-cCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcccCCCc----hhhhh----------
Confidence 3466666654221 11 2223445678999999999999999999999988443332210 00000
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHH
Q 020608 158 NEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAH 236 (323)
Q Consensus 158 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~ 236 (323)
...+-.+|+.+|.++ ++.|++.++|||+...-....... ......+.. .++..--.+.-.|+|+.+
T Consensus 217 -~~~~~~~k~~~e~~~----~~Sgl~ytiIR~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~r~~vael~ 283 (411)
T KOG1203|consen 217 -NGLVLKAKLKAEKFL----QDSGLPYTIIRPGGLEQDTGGQRE--------VVVDDEKELLTVDGGAYSISRLDVAELV 283 (411)
T ss_pred -hhhhhHHHHhHHHHH----HhcCCCcEEEeccccccCCCCcce--------ecccCccccccccccceeeehhhHHHHH
Confidence 012447777777766 477999999999888653221100 000111111 111111256778999999
Q ss_pred HHhhcCCCCCc
Q 020608 237 ILVYENPSACG 247 (323)
Q Consensus 237 ~~~~~~~~~~~ 247 (323)
+.++.+.....
T Consensus 284 ~~all~~~~~~ 294 (411)
T KOG1203|consen 284 AKALLNEAATF 294 (411)
T ss_pred HHHHhhhhhcc
Confidence 99988776654
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=112.86 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=124.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhH----HHHHhcC--C
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDA----IAAAVTG--C 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~----~~~~~~~--~ 78 (323)
.=.+|||||..||++.+++|+++|.+|++++|+.++.+.. .+++.. ....+.++..|.++.+. +.+.+.+ +
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v--~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAV--AKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHH--HHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 3479999999999999999999999999999986543332 222221 22467888999987654 5555554 5
Q ss_pred CEEEEcccCCc-cCC-----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 79 TGVFHLASPCI-VDK-----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 79 d~Vih~a~~~~-~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
.++|||+|+.. .+. ........+.+|+.++..+.+.. .+.+.+-+|++||.++..+.+.+
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~~---------- 197 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPLL---------- 197 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChhH----------
Confidence 68999999874 222 12244667889999887777775 33345689999999776655432
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~ 198 (323)
+.|+.+|...+.+...+..++ |+.+-.+-|..|-++...
T Consensus 198 -----------s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~ 239 (312)
T KOG1014|consen 198 -----------SVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAK 239 (312)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccccc
Confidence 349999998888877776664 899999999999887643
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=108.32 Aligned_cols=214 Identities=18% Similarity=0.099 Sum_probs=143.1
Q ss_pred CCC-CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCHhHHHHHhc--
Q 020608 1 MSK-EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-GADTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 1 m~~-~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
|.+ +.+.+|+||++..||..++..+.+.+-+.....++....+ .+.+. ..........+|++....+.++.+
T Consensus 1 m~~~~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~----~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~ 76 (253)
T KOG1204|consen 1 MDLNMRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE----LEGLKVAYGDDFVHVVGDITEEQLLGALREAP 76 (253)
T ss_pred CCcccceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc----ccceEEEecCCcceechHHHHHHHHHHHHhhh
Confidence 554 4467899999999999999999988765544443332221 11111 111234445677776665555544
Q ss_pred -----CCCEEEEcccCCcc-------CCCCCchhhhhhHHHHHHHHHHHHHhhC--C---cCEEEEecccccccCCCCCC
Q 020608 77 -----GCTGVFHLASPCIV-------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--G---VKRVVVTSSISSITPSPKWP 139 (323)
Q Consensus 77 -----~~d~Vih~a~~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~---~~~~v~~SS~~~~~~~~~~~ 139 (323)
+.|.||||||.... ..+.+.|..+++.|+.+...|...+... + .+-+|++||.+++.+...|.
T Consensus 77 r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~~wa 156 (253)
T KOG1204|consen 77 RKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSSWA 156 (253)
T ss_pred hhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhccccHHH
Confidence 45999999997532 1245678899999999999999987442 1 26799999998888776554
Q ss_pred CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCC---CchhH---HHHHHH
Q 020608 140 ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPT---LNASM---LMLLRL 211 (323)
Q Consensus 140 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~---~~~~~---~~~~~~ 211 (323)
. |+.+|++-+.+...++.+- ++.+..++||.+-.+.+... ....+ ..+...
T Consensus 157 ~---------------------yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el 215 (253)
T KOG1204|consen 157 A---------------------YCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKEL 215 (253)
T ss_pred H---------------------hhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHH
Confidence 4 9999999999999887664 88999999999988753211 10111 111111
Q ss_pred HcCCCCCccCcCCCcccHHHHHHHHHHhhcCC-CCCcc
Q 020608 212 LQGCTDTYENFFMGSVHFKDVALAHILVYENP-SACGR 248 (323)
Q Consensus 212 ~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~-~~~~~ 248 (323)
.. .-.++...+.|+.+..++++. ...|+
T Consensus 216 ~~---------~~~ll~~~~~a~~l~~L~e~~~f~sG~ 244 (253)
T KOG1204|consen 216 KE---------SGQLLDPQVTAKVLAKLLEKGDFVSGQ 244 (253)
T ss_pred Hh---------cCCcCChhhHHHHHHHHHHhcCccccc
Confidence 11 112667889999999998876 34444
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=100.99 Aligned_cols=130 Identities=14% Similarity=0.106 Sum_probs=84.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|+++||||+|+||+++++.|++.|++|++++|+.+... .....+...+....++.+|+++.+++.++++
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~ 89 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQ--ATVEEITNLGGEALFVSYDMEKQGDWQRVISITLN 89 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999988653222 2223332223467788999999988777543
Q ss_pred ---CCCEEEEcccCCccCCCC-C-chhhhhhHHHHHH----HHHHHHHhhC-------CcCEEEEecccccc
Q 020608 77 ---GCTGVFHLASPCIVDKVE-D-PQNQLLNPAVKGT----VNVLTAAKAL-------GVKRVVVTSSISSI 132 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~~~-~-~~~~~~~~n~~~~----~~l~~~~~~~-------~~~~~v~~SS~~~~ 132 (323)
++|++||+||........ + .....-..|+.++ ..+.....+. ..+||..+||.++-
T Consensus 90 ~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
T PRK06720 90 AFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQS 161 (169)
T ss_pred HcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccccc
Confidence 689999999975432211 1 1111113334433 3333332222 34689999988543
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-13 Score=101.60 Aligned_cols=213 Identities=17% Similarity=0.175 Sum_probs=147.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
++-..+||||...+|...+++|+.+|..|.+++...++.. +..+++ +.++.|...|+++.+++..++.
T Consensus 8 kglvalvtggasglg~ataerlakqgasv~lldlp~skg~--~vakel---g~~~vf~padvtsekdv~aala~ak~kfg 82 (260)
T KOG1199|consen 8 KGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGA--DVAKEL---GGKVVFTPADVTSEKDVRAALAKAKAKFG 82 (260)
T ss_pred cCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccch--HHHHHh---CCceEEeccccCcHHHHHHHHHHHHhhcc
Confidence 5567899999999999999999999999999876554322 333333 4588999999999988887765
Q ss_pred CCCEEEEcccCCcc----------CCCCCchhhhhhHHHHHHHHHHHHHhh--------CC--cCEEEEecccccccCCC
Q 020608 77 GCTGVFHLASPCIV----------DKVEDPQNQLLNPAVKGTVNVLTAAKA--------LG--VKRVVVTSSISSITPSP 136 (323)
Q Consensus 77 ~~d~Vih~a~~~~~----------~~~~~~~~~~~~~n~~~~~~l~~~~~~--------~~--~~~~v~~SS~~~~~~~~ 136 (323)
+.|..+||||.... ....++....+++|+.||.|+++.... ++ .+-+|+..|.+++.+..
T Consensus 83 rld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~ 162 (260)
T KOG1199|consen 83 RLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQT 162 (260)
T ss_pred ceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCcc
Confidence 56999999997521 113456778899999999999988521 12 23577777776665554
Q ss_pred CCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHc
Q 020608 137 KWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQ 213 (323)
Q Consensus 137 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~ 213 (323)
+. ..|+.||...-.+..-.++. .|++++.|-||.+-.|.... .+.....+..
T Consensus 163 gq---------------------aaysaskgaivgmtlpiardla~~gir~~tiapglf~tpllss----lpekv~~fla 217 (260)
T KOG1199|consen 163 GQ---------------------AAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLSS----LPEKVKSFLA 217 (260)
T ss_pred ch---------------------hhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhhh----hhHHHHHHHH
Confidence 32 34999998765554444433 48999999999988886432 2222333322
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCccEE
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENPSACGRHL 250 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~ 250 (323)
.. +++|.. +-|+.+-+..+-..++++-.+|..+
T Consensus 218 ~~-ipfpsr---lg~p~eyahlvqaiienp~lngevi 250 (260)
T KOG1199|consen 218 QL-IPFPSR---LGHPHEYAHLVQAIIENPYLNGEVI 250 (260)
T ss_pred Hh-CCCchh---cCChHHHHHHHHHHHhCcccCCeEE
Confidence 21 222221 4578888888888889887777643
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-11 Score=103.39 Aligned_cols=179 Identities=17% Similarity=0.056 Sum_probs=123.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
++|+||.|||++|.||+.++..|+.++ .+++++++........ .+.+... .....+.+|+.++.+.++++|+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~----Dl~~~~~--~~~v~~~td~~~~~~~l~gaDv 79 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAA----DLSHIDT--PAKVTGYADGELWEKALRGADL 79 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccccc----chhhcCc--CceEEEecCCCchHHHhCCCCE
Confidence 578999999999999999999999665 5899998833222111 1111111 2234566665555677899999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
||++||.... ...+..+.+..|+..+.++++++++++++++|+++|..+ ....... ...+.+...+++. .
T Consensus 80 VVitaG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv-dv~~~~~-~~~~~~~sg~p~~------~ 149 (321)
T PTZ00325 80 VLICAGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV-NSTVPIA-AETLKKAGVYDPR------K 149 (321)
T ss_pred EEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH-HHHHHHH-HhhhhhccCCChh------h
Confidence 9999997432 223567789999999999999999999999999999733 2211000 0011122222222 5
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
.||.+-+..-++-...++..++....++ +.|+|.+..
T Consensus 150 viG~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 150 LFGVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred eeechhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 6888756666777777878899888888 889998755
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=89.84 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=76.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 78 (323)
|+++|||||||+|. +++.|++.|++|+++.|++.+.. .....+.. ...+.++.+|++|.+++.++++ .+
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~--~l~~~l~~-~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~i 76 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLE--NVKRESTT-PESITPLPLDYHDDDALKLAIKSTIEKNGPF 76 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHH--HHHHHhhc-CCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 57999999998876 99999999999999988643221 11221221 3467889999999999887765 34
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC----EEEEeccc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK----RVVVTSSI 129 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~~v~~SS~ 129 (323)
|.+|+.+- +.++.++..+|++.+++ +|+++=..
T Consensus 77 d~lv~~vh------------------~~~~~~~~~~~~~~gv~~~~~~~~h~~gs 113 (177)
T PRK08309 77 DLAVAWIH------------------SSAKDALSVVCRELDGSSETYRLFHVLGS 113 (177)
T ss_pred eEEEEecc------------------ccchhhHHHHHHHHccCCCCceEEEEeCC
Confidence 66665542 44688899999999988 89887654
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=99.40 Aligned_cols=175 Identities=18% Similarity=0.087 Sum_probs=119.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
.+||.|||++|.||+.++..|+.++. +++++++++..... ..+.+..... ...++.+.+++.+.++++|+||
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a----~Dl~~~~~~~--~i~~~~~~~d~~~~l~~aDiVV 91 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVA----ADVSHINTPA--QVRGFLGDDQLGDALKGADLVI 91 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeE----chhhhCCcCc--eEEEEeCCCCHHHHcCCCCEEE
Confidence 46899999999999999999997764 89999886521111 1111111111 2335444455778899999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+||....+ .....+.+..|+..+.++.+.+++++.+.+|+++|-=+ .....-. ...+.+...+.| ...|
T Consensus 92 itAG~~~~~--g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv-D~~~~i~-t~~~~~~s~~p~------~~vi 161 (323)
T PLN00106 92 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV-NSTVPIA-AEVLKKAGVYDP------KKLF 161 (323)
T ss_pred EeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc-cccHHHH-HHHHHHcCCCCc------ceEE
Confidence 999975332 34567889999999999999999999889999888622 1100000 001112222222 2669
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCC
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPV 196 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~ 196 (323)
|.+++..+++-..+++..+++...++ +.|+|.+
T Consensus 162 G~~~LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 162 GVTTLDVVRANTFVAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred EEecchHHHHHHHHHHHhCCChhheE-EEEEEeC
Confidence 99998899999999999999888884 5566655
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.1e-09 Score=91.06 Aligned_cols=172 Identities=15% Similarity=0.039 Sum_probs=104.3
Q ss_pred CceEEEeccccHHHHH--HHHHHHHCCCEEEEEecCCCcHHH---------HHHHh-hccCCCCCeEEEEccCCCHhHHH
Q 020608 5 AEVVCVTGGSGCIGSW--LVSLLLERRYTVHATVKNLSDERE---------TAHLK-ALEGADTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 5 ~~~vlItGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~~---------~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~ 72 (323)
+|++||||+++.+|.+ +++.| +.|++|+++.+....... .+... .+...+..+..+.+|+++.+.++
T Consensus 41 gK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v~ 119 (398)
T PRK13656 41 PKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQ 119 (398)
T ss_pred CCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 5899999999999999 89999 999999888854322110 01111 11222335678899999998887
Q ss_pred HHhc-------CCCEEEEcccCCccCCC----------------CC-----------------ch---hhhhhHHHHHHH
Q 020608 73 AAVT-------GCTGVFHLASPCIVDKV----------------ED-----------------PQ---NQLLNPAVKGTV 109 (323)
Q Consensus 73 ~~~~-------~~d~Vih~a~~~~~~~~----------------~~-----------------~~---~~~~~~n~~~~~ 109 (323)
++++ ++|+|||++|....... .. .. +-..-+.++|..
T Consensus 120 ~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vMgge 199 (398)
T PRK13656 120 KVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVMGGE 199 (398)
T ss_pred HHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhhccc
Confidence 7665 68999999997622110 00 00 000112344443
Q ss_pred HHHHHHh--------hCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-
Q 020608 110 NVLTAAK--------ALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK- 180 (323)
Q Consensus 110 ~l~~~~~--------~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~- 180 (323)
....+.. ..+ .++|-.|..+.-...+. | ..+.-|.+|...|..++.++.+.
T Consensus 200 dw~~Wi~al~~a~lla~g-~~~va~TY~G~~~t~p~----------------Y---~~g~mG~AKa~LE~~~r~La~~L~ 259 (398)
T PRK13656 200 DWELWIDALDEAGVLAEG-AKTVAYSYIGPELTHPI----------------Y---WDGTIGKAKKDLDRTALALNEKLA 259 (398)
T ss_pred hHHHHHHHHHhcccccCC-cEEEEEecCCcceeecc----------------c---CCchHHHHHHHHHHHHHHHHHHhh
Confidence 3322221 112 35555554422111111 0 01346999999999988887764
Q ss_pred --CccEEEEcCCCccCCCC
Q 020608 181 --GLDVVVVNPGTVMGPVI 197 (323)
Q Consensus 181 --~~~~~~~Rp~~v~G~~~ 197 (323)
|+++.++-++.+.....
T Consensus 260 ~~giran~i~~g~~~T~As 278 (398)
T PRK13656 260 AKGGDAYVSVLKAVVTQAS 278 (398)
T ss_pred hcCCEEEEEecCcccchhh
Confidence 78899998888877643
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-08 Score=81.92 Aligned_cols=181 Identities=20% Similarity=0.226 Sum_probs=119.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-----CEEEEEecCCCcHHHH-HHHhh-ccCCCCCeEEEEccCCCHhHHHHH--
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-----YTVHATVKNLSDERET-AHLKA-LEGADTRLRLFQIDLLDYDAIAAA-- 74 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~-- 74 (323)
+.|.++|||++..||-++|.+|++.. ..+++..|+.++.+.. .+++. .++...+++++..|++|..++.++
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 45789999999999999999999863 2466777887654432 22221 122234788999999997665544
Q ss_pred -----hcCCCEEEEcccCCccCC-------------------------------CCCchhhhhhHHHHHHHHHHHHHhhC
Q 020608 75 -----VTGCTGVFHLASPCIVDK-------------------------------VEDPQNQLLNPAVKGTVNVLTAAKAL 118 (323)
Q Consensus 75 -----~~~~d~Vih~a~~~~~~~-------------------------------~~~~~~~~~~~n~~~~~~l~~~~~~~ 118 (323)
++..|.|+-+||.+..+. +.++....|++||.|..-++......
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 457799999998753221 24566788999999998888776432
Q ss_pred ---C-cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCC
Q 020608 119 ---G-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGT 191 (323)
Q Consensus 119 ---~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~ 191 (323)
+ -..+|.+||..+...+-+. || . -+..-..+|..||.+.+-+-.+..+.. |+.-.++.||.
T Consensus 162 l~~~~~~~lvwtSS~~a~kk~lsl-------eD-~----q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~ 229 (341)
T KOG1478|consen 162 LCHSDNPQLVWTSSRMARKKNLSL-------ED-F----QHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGI 229 (341)
T ss_pred hhcCCCCeEEEEeecccccccCCH-------HH-H----hhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCce
Confidence 1 2489999998554433221 00 0 000111459999999987655554332 67777788877
Q ss_pred ccCCC
Q 020608 192 VMGPV 196 (323)
Q Consensus 192 v~G~~ 196 (323)
.....
T Consensus 230 ~tt~~ 234 (341)
T KOG1478|consen 230 FTTNS 234 (341)
T ss_pred eecch
Confidence 76543
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-09 Score=91.99 Aligned_cols=98 Identities=26% Similarity=0.286 Sum_probs=77.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
||+|+|.|+ |+||+.+++.|+++| .+|++.+|++++....... ...+++.+..|+.|.+++.+++++.|+|||
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~-----~~~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL-----IGGKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh-----ccccceeEEecccChHHHHHHHhcCCEEEE
Confidence 689999998 999999999999999 8999999986443332211 123789999999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEec
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 127 (323)
++... -..+++++|.+.|+ .++=+|
T Consensus 75 ~~p~~------------------~~~~i~ka~i~~gv-~yvDts 99 (389)
T COG1748 75 AAPPF------------------VDLTILKACIKTGV-DYVDTS 99 (389)
T ss_pred eCCch------------------hhHHHHHHHHHhCC-CEEEcc
Confidence 99652 12268888888875 555443
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9e-08 Score=76.59 Aligned_cols=212 Identities=14% Similarity=0.100 Sum_probs=127.9
Q ss_pred CCCCceEEEecc--ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 2 SKEAEVVCVTGG--SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 2 ~~~~~~vlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
.|++|++||+|- ..-|++.+++.|.++|.++......+ ...++.+.+.........++||+++.++++++|.
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e---~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~ 79 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE---RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIK 79 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHH
Confidence 478999999996 46899999999999999998876653 2223333333222234568999999999888876
Q ss_pred ----CCCEEEEcccCCccCC--------CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCc
Q 020608 77 ----GCTGVFHLASPCIVDK--------VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|.|+|+.+...-+. +.+.+....++-..+-..+.++++.. .-..+|-.|=.++....+.
T Consensus 80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPn----- 154 (259)
T COG0623 80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPN----- 154 (259)
T ss_pred HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCC-----
Confidence 5799999999864221 22333344444444444455555432 1234443332111111111
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
-|.-|..|++.|.-++.++.+. |++++.|-.|.+-.-.... ...+..++.......|.
T Consensus 155 ----------------YNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasg-I~~f~~~l~~~e~~aPl-- 215 (259)
T COG0623 155 ----------------YNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASG-IGDFRKMLKENEANAPL-- 215 (259)
T ss_pred ----------------CchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhc-cccHHHHHHHHHhhCCc--
Confidence 1558999999999888888775 7888888777664321111 11122222222222211
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
..-+.++||......++..-.
T Consensus 216 ----~r~vt~eeVG~tA~fLlSdLs 236 (259)
T COG0623 216 ----RRNVTIEEVGNTAAFLLSDLS 236 (259)
T ss_pred ----cCCCCHHHhhhhHHHHhcchh
Confidence 113568999988888887543
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-09 Score=87.96 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCCceEEEeccc----------------cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC
Q 020608 3 KEAEVVCVTGGS----------------GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66 (323)
Q Consensus 3 ~~~~~vlItGat----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (323)
|++|+||||+|. ||+|++|+++|+++|++|+++.+...... . ... ....+..+.++..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~--~---~~~-~~~~~~~V~s~~d 74 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKP--N---DIN-NQLELHPFEGIID 74 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCC--c---ccC-CceeEEEEecHHH
Confidence 478999999886 99999999999999999998875321100 0 000 0123445666544
Q ss_pred CHhHHHHHhc--CCCEEEEcccCCcc
Q 020608 67 DYDAIAAAVT--GCTGVFHLASPCIV 90 (323)
Q Consensus 67 ~~~~~~~~~~--~~d~Vih~a~~~~~ 90 (323)
..+.+.++++ ++|+|||+||...+
T Consensus 75 ~~~~l~~~~~~~~~D~VIH~AAvsD~ 100 (229)
T PRK09620 75 LQDKMKSIITHEKVDAVIMAAAGSDW 100 (229)
T ss_pred HHHHHHHHhcccCCCEEEECccccce
Confidence 4467777775 68999999998755
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=87.91 Aligned_cols=176 Identities=14% Similarity=0.048 Sum_probs=103.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC-------CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR-------YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (323)
..||+||||+|+||++++..|+..+ .+|+++++++...........+.+ -......|+....++.+.+++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d---~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD---CAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh---ccccccCCceecCCHHHHhCC
Confidence 3589999999999999999999854 589999986531111000000100 000223455545667778899
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cC-EEEEecccccccCCCCCCCCccccCCC-CCChhh
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VK-RVVVTSSISSITPSPKWPADKVKDEDC-WTDEEY 154 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~-~~~~~~ 154 (323)
+|+|||+||.... ...+..+.++.|+.-...+.....++. .+ .++.+|.- + ... ....-+.. ...+.
T Consensus 79 aDiVI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNP-v-D~~-----t~~~~k~~~~~~~~- 148 (325)
T cd01336 79 VDVAILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNP-A-NTN-----ALILLKYAPSIPKE- 148 (325)
T ss_pred CCEEEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCc-H-HHH-----HHHHHHHcCCCCHH-
Confidence 9999999997533 223447789999999999999987773 23 55666542 1 100 00111111 11110
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 155 CRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 155 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
..-+-+.+..-++-..+++..+++...++-..|+|.+..
T Consensus 149 -----~ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~ 187 (325)
T cd01336 149 -----NFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS 187 (325)
T ss_pred -----HEEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC
Confidence 111112333334444445566888888877788887644
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-08 Score=83.09 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC--HhHHHHHhcCCCEEEEcccCCc
Q 020608 13 GSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD--YDAIAAAVTGCTGVFHLASPCI 89 (323)
Q Consensus 13 atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~d~Vih~a~~~~ 89 (323)
+|||||++|+++|+++|++|+++.|..... . ....++.++..+-.+ .+.+.+.+.++|+|||+||...
T Consensus 24 SSG~iG~aLA~~L~~~G~~V~li~r~~~~~-------~--~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd 93 (229)
T PRK06732 24 STGQLGKIIAETFLAAGHEVTLVTTKTAVK-------P--EPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD 93 (229)
T ss_pred cchHHHHHHHHHHHhCCCEEEEEECccccc-------C--CCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence 489999999999999999999998753210 0 001245655544322 2455566778999999999864
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.72 E-value=6e-08 Score=84.43 Aligned_cols=173 Identities=14% Similarity=0.057 Sum_probs=112.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-------EEEEEecCCCcHHHHHHHhhccCC----CCCeEEEEccCCCHhHHHH
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-------TVHATVKNLSDERETAHLKALEGA----DTRLRLFQIDLLDYDAIAA 73 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~ 73 (323)
.+||.|+|++|.||+.++..|+..|. +++++++.............+.+. ..++++. . ...+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~------~~~~ 74 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-D------DPNV 74 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-c------CcHH
Confidence 46999999999999999999998874 788888753221111111111110 0122211 1 1234
Q ss_pred HhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc-C-EEEEecccccccCCCCCCCCccccCCCCCC
Q 020608 74 AVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV-K-RVVVTSSISSITPSPKWPADKVKDEDCWTD 151 (323)
Q Consensus 74 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~ 151 (323)
.++++|+||.+||...-+ ..+-.+.++.|+.-.+.+.....+++. . .+|.+|.- +.-.. ........-..
T Consensus 75 ~~~daDivvitaG~~~k~--g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP--vD~~t----~~~~k~sg~~p 146 (322)
T cd01338 75 AFKDADWALLVGAKPRGP--GMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP--CNTNA----LIAMKNAPDIP 146 (322)
T ss_pred HhCCCCEEEEeCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc--HHHHH----HHHHHHcCCCC
Confidence 577899999999974332 234566889999999999999988763 4 55555532 11000 00111110011
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
+...||.+++..+++...+++.++++...+|..+|||++..
T Consensus 147 ------~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~ 187 (322)
T cd01338 147 ------PDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP 187 (322)
T ss_pred ------hHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc
Confidence 12569999999999999999999999999999999999743
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-07 Score=74.30 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=62.3
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++++++++|+||+|.+|+.+++.|++.|++|+++.|+..+.. ...+.+.. ..+.....+|..+.+++.++++++|+|
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~--~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~diV 101 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQ--KAADSLRA-RFGEGVGAVETSDDAARAAAIKGADVV 101 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH--HHHHHHHh-hcCCcEEEeeCCCHHHHHHHHhcCCEE
Confidence 356789999999999999999999999999999988743222 11222211 113445567888988888999999999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|++...
T Consensus 102 i~at~~ 107 (194)
T cd01078 102 FAAGAA 107 (194)
T ss_pred EECCCC
Confidence 998754
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=76.48 Aligned_cols=171 Identities=14% Similarity=0.053 Sum_probs=103.6
Q ss_pred ceEEEeccccHHHHHHHHHHHH-C--CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLE-R--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~-~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
|||+|+||||.||++++..|.. . ++++++++|++.. .. ..+ .+.+. .....+.+ .+.+++.+.++++|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g-~al-Dl~~~-~~~~~i~~--~~~~d~~~~l~~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PG-VAV-DLSHI-PTAVKIKG--FSGEDPTPALEGADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cc-eeh-hhhcC-CCCceEEE--eCCCCHHHHcCCCCEEE
Confidence 6899999999999999998865 2 4678888876421 10 001 11111 11112233 22334556678899999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccc-----cCCCCCChhhhcc
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVK-----DEDCWTDEEYCRQ 157 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~-----~e~~~~~~~~~~~ 157 (323)
.++|.... ......+.+..|.....++++++++++.+++|.+.|- -+.-.. ..+ .....+ +
T Consensus 75 itaG~~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN-P~D~~t-----~~~~~~~~~~sg~p-~----- 140 (312)
T PRK05086 75 ISAGVARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN-PVNTTV-----AIAAEVLKKAGVYD-K----- 140 (312)
T ss_pred EcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC-chHHHH-----HHHHHHHHHhcCCC-H-----
Confidence 99997433 2234567889999999999999999998888888875 211000 000 110000 0
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 158 NEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 158 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
....|.+-+-.-++....++..+++..-++ +.|+|.+..
T Consensus 141 -~rvig~~~Lds~R~~~~ia~~l~~~~~~v~-~~v~GeHg~ 179 (312)
T PRK05086 141 -NKLFGVTTLDVIRSETFVAELKGKQPGEVE-VPVIGGHSG 179 (312)
T ss_pred -HHEEeeecHHHHHHHHHHHHHhCCChhheE-EEEEEecCC
Confidence 012333333334455555666788777777 788887633
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.5e-07 Score=81.24 Aligned_cols=96 Identities=29% Similarity=0.384 Sum_probs=66.9
Q ss_pred EEEeccccHHHHHHHHHHHHCC-C-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 8 VCVTGGSGCIGSWLVSLLLERR-Y-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|.|| |++|+.+++.|++.+ . +|++.+|+..+.. ....++ ...++.++..|+.|.+++.++++++|+||||+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~--~~~~~~--~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAE--RLAEKL--LGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH--HHHT----TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHH--HHHhhc--cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999 999999999999986 4 8999999753222 122111 24589999999999999999999999999999
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEec
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 127 (323)
+.. ....++++|.+.|+ ++|-.|
T Consensus 76 gp~------------------~~~~v~~~~i~~g~-~yvD~~ 98 (386)
T PF03435_consen 76 GPF------------------FGEPVARACIEAGV-HYVDTS 98 (386)
T ss_dssp SGG------------------GHHHHHHHHHHHT--EEEESS
T ss_pred ccc------------------hhHHHHHHHHHhCC-Ceeccc
Confidence 762 12346777777764 555533
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=81.97 Aligned_cols=75 Identities=19% Similarity=0.104 Sum_probs=58.5
Q ss_pred CCCceEEEecc----------------ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC
Q 020608 3 KEAEVVCVTGG----------------SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66 (323)
Q Consensus 3 ~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (323)
+++|+|||||| +|.+|.+++++|+++|++|+++.++.+ .. . ..+ ....|++
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-------~---~~~--~~~~dv~ 252 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-------T---PAG--VKRIDVE 252 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-------C---CCC--cEEEccC
Confidence 57899999999 999999999999999999999987542 10 0 112 2467999
Q ss_pred CHhHHHHHhc----CCCEEEEcccCCcc
Q 020608 67 DYDAIAAAVT----GCTGVFHLASPCIV 90 (323)
Q Consensus 67 ~~~~~~~~~~----~~d~Vih~a~~~~~ 90 (323)
+.+++.+++. ++|++||+||...+
T Consensus 253 ~~~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 253 SAQEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred CHHHHHHHHHHhcCCCCEEEEccccccc
Confidence 9887776553 68999999998644
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-06 Score=73.03 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=69.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
|+|||+||||. |+.|+++|.+.|++|++..++......... .+...+..+..+.+++.++++ ++|+||+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~--------~g~~~v~~g~l~~~~l~~~l~~~~i~~VID 71 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI--------HQALTVHTGALDPQELREFLKRHSIDILVD 71 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc--------cCCceEEECCCCHHHHHHHHHhcCCCEEEE
Confidence 58999999999 999999999999999999887643322111 123345566667777888886 5899999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCE
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 122 (323)
.+.. +. ..-+.++.++|++.++.-
T Consensus 72 AtHP---------fA------~~is~~a~~a~~~~~ipy 95 (256)
T TIGR00715 72 ATHP---------FA------AQITTNATAVCKELGIPY 95 (256)
T ss_pred cCCH---------HH------HHHHHHHHHHHHHhCCcE
Confidence 9854 22 234778889999988753
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-07 Score=78.09 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=51.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHC-C-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLER-R-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+++++|+||||+|+||+.++++|+++ | .+++++.|+..+... ...++ ..+++. ++.+++.++|+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~--La~el---------~~~~i~---~l~~~l~~aDi 218 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE--LQAEL---------GGGKIL---SLEEALPEADI 218 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH--HHHHh---------ccccHH---hHHHHHccCCE
Confidence 57899999999999999999999865 5 589888886432221 11111 124443 35678889999
Q ss_pred EEEcccCC
Q 020608 81 VFHLASPC 88 (323)
Q Consensus 81 Vih~a~~~ 88 (323)
|||+++..
T Consensus 219 Vv~~ts~~ 226 (340)
T PRK14982 219 VVWVASMP 226 (340)
T ss_pred EEECCcCC
Confidence 99999863
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-06 Score=73.79 Aligned_cols=86 Identities=8% Similarity=-0.014 Sum_probs=62.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCE-EEEEecCCCcHHH-HHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERE-TAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+++++++|+|| |++|++++..|++.|.+ |+++.|+....+. .+..+.+......+.+...|+++.+++.+.++.+|+
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 35789999998 89999999999999985 9999997521122 122223322223455667899888888888888999
Q ss_pred EEEcccCCc
Q 020608 81 VFHLASPCI 89 (323)
Q Consensus 81 Vih~a~~~~ 89 (323)
|||+.....
T Consensus 203 lINaTp~Gm 211 (289)
T PRK12548 203 LVNATLVGM 211 (289)
T ss_pred EEEeCCCCC
Confidence 999886543
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.38 E-value=6e-06 Score=72.05 Aligned_cols=164 Identities=16% Similarity=0.082 Sum_probs=98.3
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC-------EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH-----------
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY-------TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY----------- 68 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~----------- 68 (323)
||.||||+|.||+.++..|+..|. ++++++++... + ..+....|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~-~-------------~~~g~~~Dl~d~~~~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM-K-------------ALEGVVMELQDCAFPLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc-C-------------ccceeeeehhhhcccccCCcEEe
Confidence 799999999999999999998652 58888876421 0 111122222222
Q ss_pred hHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cC-EEEEecccccccCCCCCCCCccccC
Q 020608 69 DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VK-RVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 69 ~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
....+.++++|+|||+||...- ...+-.+.+..|+.-.+.+.....+++ .. .++.+|.- + .-.. ....+.
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP-v-D~~t----~~~~k~ 139 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRK--PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP-A-NTNA----LIALKN 139 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCC--cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc-H-HHHH----HHHHHH
Confidence 2345678899999999997433 233456788999999999999998883 44 45555432 1 0000 000111
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
.....+. ..-+.+.+..-++-...++..+++...+.-..|+|.+..
T Consensus 140 sg~~p~~------~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 185 (323)
T cd00704 140 APNLPPK------NFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN 185 (323)
T ss_pred cCCCCHH------HEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecccC
Confidence 1100110 123445555555555556666776666666678887544
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.8e-06 Score=70.76 Aligned_cols=164 Identities=19% Similarity=0.130 Sum_probs=98.8
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC-------EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh----------
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY-------TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---------- 69 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---------- 69 (323)
+|.|+|++|.+|+.++..|+..+. ++++++++++... .+....|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~--------------a~g~~~Dl~d~~~~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKV--------------LEGVVMELMDCAFPLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccc--------------cceeEeehhcccchhcCceecc
Confidence 689999999999999999997543 5888887543211 112233333322
Q ss_pred -HHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cC-EEEEecccccccCCCCCCCCccccC
Q 020608 70 -AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VK-RVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 70 -~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
+..+.++++|+|||+||.... ...+..+.+..|+.-.+.+.....+++ .+ .++.+|.- + .-.. ......
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNP-v-Dv~t----~v~~~~ 138 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNP-A-NTNA----LVLSNY 138 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc-H-HHHH----HHHHHH
Confidence 334567899999999997432 233467889999999999999998873 43 55555532 1 0000 000000
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
.....+ ...=.-+.+..-++-...++..+++...++-..|+|.+..
T Consensus 139 sg~~~~------~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 184 (324)
T TIGR01758 139 APSIPP------KNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSS 184 (324)
T ss_pred cCCCCc------ceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCC
Confidence 000000 0111122333444555556667888888887788897654
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=71.01 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=45.4
Q ss_pred cccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh-------cCCCEEEEcc
Q 020608 13 GSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV-------TGCTGVFHLA 85 (323)
Q Consensus 13 atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~d~Vih~a 85 (323)
+||+||++++++|+++|++|+++.+... .... ....+|+.+.+..++++ .++|++||+|
T Consensus 23 SSGgIG~AIA~~la~~Ga~Vvlv~~~~~-------l~~~-------~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnA 88 (227)
T TIGR02114 23 STGHLGKIITETFLSAGHEVTLVTTKRA-------LKPE-------PHPNLSIREIETTKDLLITLKELVQEHDILIHSM 88 (227)
T ss_pred cccHHHHHHHHHHHHCCCEEEEEcChhh-------cccc-------cCCcceeecHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3899999999999999999998865210 0000 01347888876666543 3689999999
Q ss_pred cCCcc
Q 020608 86 SPCIV 90 (323)
Q Consensus 86 ~~~~~ 90 (323)
|....
T Consensus 89 gv~d~ 93 (227)
T TIGR02114 89 AVSDY 93 (227)
T ss_pred Eeccc
Confidence 97543
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-05 Score=60.53 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=74.4
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHH-HHHhhccC-CCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERET-AHLKALEG-ADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|||.|+|++|.+|++++..|...+ .++++++++.+..... .-+.+... .........+ +.+ .++++|+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~---~~~----~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSG---DYE----ALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEES---SGG----GGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccc---ccc----ccccccEE
Confidence 689999999999999999999987 4899998864321111 11111111 1112233332 222 36788999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEec
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTS 127 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 127 (323)
|-+||.... ...+-.+.++.|..-.+.+.+...+++.+ .++.+|
T Consensus 74 vitag~~~~--~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 74 VITAGVPRK--PGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp EETTSTSSS--TTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred EEecccccc--ccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 999997533 22345678899999999999998887643 555554
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.5e-07 Score=57.20 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=27.8
Q ss_pred CCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 278 PKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
.+.+..+...++.|++|+ ++|||+| ++|+++++++++|+++|.
T Consensus 15 ~~rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np 59 (62)
T PF13950_consen 15 APRRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNP 59 (62)
T ss_dssp E---TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHST
T ss_pred CCCCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCc
Confidence 344556777889999999 9999999 999999999999999875
|
... |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.8e-06 Score=74.92 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=70.6
Q ss_pred CCCceEEEecc----------------ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC
Q 020608 3 KEAEVVCVTGG----------------SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66 (323)
Q Consensus 3 ~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (323)
+++++|+|||| ||.+|.+++++|..+|++|+++.++.... . ...+ ...|++
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~--------~---~~~~--~~~~v~ 249 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL--------T---PPGV--KSIKVS 249 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC--------C---CCCc--EEEEec
Confidence 56899999999 46799999999999999999987654211 0 1122 467888
Q ss_pred CHhHH-HHHh----cCCCEEEEcccCCccCCC---CC---chhhhhhHHHHHHHHHHHHHhhC
Q 020608 67 DYDAI-AAAV----TGCTGVFHLASPCIVDKV---ED---PQNQLLNPAVKGTVNVLTAAKAL 118 (323)
Q Consensus 67 ~~~~~-~~~~----~~~d~Vih~a~~~~~~~~---~~---~~~~~~~~n~~~~~~l~~~~~~~ 118 (323)
+.+++ ++++ .++|++|++||...+... .. .....+..|+.-+-.++...++.
T Consensus 250 ~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~ 312 (390)
T TIGR00521 250 TAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKI 312 (390)
T ss_pred cHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhh
Confidence 88777 5444 368999999998755321 11 11123345666777777776554
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.6e-05 Score=68.01 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=63.0
Q ss_pred eEEEeccccHHHHHHHHHHHH----CCCEEEEEecCCCcHHHHHHHhhccCC----CCCeEEEEccCCCHhHHHHHhcCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLE----RRYTVHATVKNLSDERETAHLKALEGA----DTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
.++|.|||||-|.+++++++. .|...-+..|++.+. .+.++.+... .+...++.+|..|++++.+..+++
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL--~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~ 84 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKL--QEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQA 84 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHH--HHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhh
Confidence 589999999999999999998 678888888875332 2333333221 123348999999999999999999
Q ss_pred CEEEEcccCC
Q 020608 79 TGVFHLASPC 88 (323)
Q Consensus 79 d~Vih~a~~~ 88 (323)
.+|+||+|+.
T Consensus 85 ~vivN~vGPy 94 (423)
T KOG2733|consen 85 RVIVNCVGPY 94 (423)
T ss_pred EEEEeccccc
Confidence 9999999986
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=98.07 E-value=2e-05 Score=62.83 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=47.4
Q ss_pred CCCceEEEecc----------------ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC
Q 020608 3 KEAEVVCVTGG----------------SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66 (323)
Q Consensus 3 ~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (323)
+++|+||||+| ||-+|.+|+++++.+|++|+.+.... .... +..+..+. +.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~-~~~~----------p~~~~~i~--v~ 67 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS-SLPP----------PPGVKVIR--VE 67 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT-S--------------TTEEEEE---S
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc-cccc----------cccceEEE--ec
Confidence 47899999986 79999999999999999999987653 2111 12555444 44
Q ss_pred CHhH----HHHHhcCCCEEEEcccCCcc
Q 020608 67 DYDA----IAAAVTGCTGVFHLASPCIV 90 (323)
Q Consensus 67 ~~~~----~~~~~~~~d~Vih~a~~~~~ 90 (323)
..++ +.+.+...|++||+|+...+
T Consensus 68 sa~em~~~~~~~~~~~Di~I~aAAVsDf 95 (185)
T PF04127_consen 68 SAEEMLEAVKELLPSADIIIMAAAVSDF 95 (185)
T ss_dssp SHHHHHHHHHHHGGGGSEEEE-SB--SE
T ss_pred chhhhhhhhccccCcceeEEEecchhhe
Confidence 4444 34445578999999998755
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.8e-05 Score=62.11 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=58.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 84 (323)
|+++|.|+ |-+|+.+++.|.+.|++|+++.+++..... ... .....+.+.+|-++++.|+++ ++++|+|+-.
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~--~~~----~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEE--FLA----DELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHH--Hhh----hhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 57888885 999999999999999999999886532211 111 012678899999999999998 7789999877
Q ss_pred cc
Q 020608 85 AS 86 (323)
Q Consensus 85 a~ 86 (323)
.+
T Consensus 74 t~ 75 (225)
T COG0569 74 TG 75 (225)
T ss_pred eC
Confidence 64
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.7e-05 Score=70.92 Aligned_cols=79 Identities=19% Similarity=0.105 Sum_probs=57.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|.+++|+|+|+|+++ +|..+++.|++.|++|++.++.... ...+...++.. .++.++.+|..+ +...++|+
T Consensus 1 ~~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~-----~~~~~~d~ 71 (450)
T PRK14106 1 MELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEED-QLKEALEELGE--LGIELVLGEYPE-----EFLEGVDL 71 (450)
T ss_pred CCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchH-HHHHHHHHHHh--cCCEEEeCCcch-----hHhhcCCE
Confidence 677889999999877 9999999999999999999886422 11222223322 246677888765 23467899
Q ss_pred EEEcccCC
Q 020608 81 VFHLASPC 88 (323)
Q Consensus 81 Vih~a~~~ 88 (323)
||++++..
T Consensus 72 vv~~~g~~ 79 (450)
T PRK14106 72 VVVSPGVP 79 (450)
T ss_pred EEECCCCC
Confidence 99999863
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00049 Score=63.21 Aligned_cols=204 Identities=19% Similarity=0.177 Sum_probs=123.7
Q ss_pred CCceEEEeccc-cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC----CCCCeEEEEccCCCHhHHHHHhc--
Q 020608 4 EAEVVCVTGGS-GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG----ADTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 4 ~~~~vlItGat-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
..+.+|||||+ |-||..++..|++-|..|+++.-+.+. +..+....+.. .+..+-++..+..+..+++.+++
T Consensus 395 ~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~-~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewI 473 (866)
T COG4982 395 GDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSE-ERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWI 473 (866)
T ss_pred ccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccH-HHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHh
Confidence 35779999986 889999999999999999988655433 33333333321 12345567777777777776654
Q ss_pred -------------------CCCEEEEcccCCccCC-C--CCchhhhhhHHHHHHHHHHHHHhhCCcC-------EEEEec
Q 020608 77 -------------------GCTGVFHLASPCIVDK-V--EDPQNQLLNPAVKGTVNVLTAAKALGVK-------RVVVTS 127 (323)
Q Consensus 77 -------------------~~d~Vih~a~~~~~~~-~--~~~~~~~~~~n~~~~~~l~~~~~~~~~~-------~~v~~S 127 (323)
..|.+|-+|++..... . ...-+...++-+...++++-..++.+.. ++|...
T Consensus 474 g~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPg 553 (866)
T COG4982 474 GDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPG 553 (866)
T ss_pred ccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecC
Confidence 2378888888754332 1 1122344566677788888877655421 455555
Q ss_pred ccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC----CccEEEEcCCCccCCCCCCCCch
Q 020608 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK----GLDVVVVNPGTVMGPVIPPTLNA 203 (323)
Q Consensus 128 S~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~Rp~~v~G~~~~~~~~~ 203 (323)
|-. -+-.++ ...|+.+|...|.++..+..+. .+.++-.+.|++-|-+....+..
T Consensus 554 SPN-rG~FGg---------------------DGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGLMg~Ndi 611 (866)
T COG4982 554 SPN-RGMFGG---------------------DGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGLMGHNDI 611 (866)
T ss_pred CCC-CCccCC---------------------CcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccccCCcch
Confidence 541 111110 0459999999999998887665 34555667788877665433332
Q ss_pred hHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhc
Q 020608 204 SMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 204 ~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
....+.++ |- . --..+++|..++.++.
T Consensus 612 iv~aiEk~--GV------~---tyS~~EmA~~LLgL~s 638 (866)
T COG4982 612 IVAAIEKA--GV------R---TYSTDEMAFNLLGLAS 638 (866)
T ss_pred hHHHHHHh--Cc------e---ecCHHHHHHHHHhhcc
Confidence 22212111 11 1 1135777777777665
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0002 Score=63.00 Aligned_cols=107 Identities=8% Similarity=0.143 Sum_probs=69.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc-------------------HHHHHHHhhccCC--CCCeEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD-------------------ERETAHLKALEGA--DTRLRL 60 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~--~~~~~~ 60 (323)
++.++|+|.|+ |.+|+++++.|+..|. ++++++++.-. .......+.+... ..+++.
T Consensus 22 L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 45689999996 8899999999999997 78878765310 1111111222222 235566
Q ss_pred EEccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 61 ~~~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+..|++ .+.++++++++|+||.+... +. .-..+.+.|.+.++ .+|+.+..
T Consensus 101 ~~~~~~-~~~~~~~~~~~DlVid~~D~---------~~--------~r~~in~~~~~~~i-p~i~~~~~ 150 (338)
T PRK12475 101 VVTDVT-VEELEELVKEVDLIIDATDN---------FD--------TRLLINDLSQKYNI-PWIYGGCV 150 (338)
T ss_pred EeccCC-HHHHHHHhcCCCEEEEcCCC---------HH--------HHHHHHHHHHHcCC-CEEEEEec
Confidence 777875 45678889999999988621 11 12235567777775 67776655
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00031 Score=61.27 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=77.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCC---CCCeEEEEccCCCHhHHHHHh
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGA---DTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
|...++||.|+|+ |.+|+.++..|+..|. ++.+++++.+.... ....+.+. ..+.....+ + ++ .+
T Consensus 2 ~~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g--~~~Dl~~~~~~~~~~~i~~~---~---~~-~~ 71 (315)
T PRK00066 2 MKKQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEG--DAMDLSHAVPFTSPTKIYAG---D---YS-DC 71 (315)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHH--HHHHHHhhccccCCeEEEeC---C---HH-Hh
Confidence 3445689999998 9999999999999986 89999886543221 11112111 112333222 2 22 36
Q ss_pred cCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEec
Q 020608 76 TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTS 127 (323)
Q Consensus 76 ~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 127 (323)
+++|+||-+||...-+ ..+-.+.+..|..-.+.+++..++++.+ .++.+|
T Consensus 72 ~~adivIitag~~~k~--g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 72 KDADLVVITAGAPQKP--GETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 8999999999874322 2344678889999999999999887744 455554
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00031 Score=61.83 Aligned_cols=107 Identities=18% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc-------------------HHHHHHHhhccCCCC--CeEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD-------------------ERETAHLKALEGADT--RLRL 60 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~--~~~~ 60 (323)
++.++|+|.|+ |++|++++..|+..|. ++++++++.-. .......+.+...++ .++.
T Consensus 22 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 22 LREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 45689999996 9999999999999997 88888765310 111111122322223 4566
Q ss_pred EEccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 61 ~~~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+..+++. +.+.+++++.|+||.+... ...-..+.++|.+.+ ..+|+.++.
T Consensus 101 ~~~~~~~-~~~~~~~~~~DlVid~~Dn-----------------~~~r~~ln~~~~~~~-iP~i~~~~~ 150 (339)
T PRK07688 101 IVQDVTA-EELEELVTGVDLIIDATDN-----------------FETRFIVNDAAQKYG-IPWIYGACV 150 (339)
T ss_pred EeccCCH-HHHHHHHcCCCEEEEcCCC-----------------HHHHHHHHHHHHHhC-CCEEEEeee
Confidence 6677754 5567788999999988521 122334667788887 478887766
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.1e-05 Score=57.57 Aligned_cols=76 Identities=11% Similarity=0.123 Sum_probs=52.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCE-EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++++++|.|+ |.+|+.++..|++.|.+ |+++.|+.++.. +..+.+. ...+.++.. +++.+.+.++|+|
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~--~l~~~~~--~~~~~~~~~-----~~~~~~~~~~Div 79 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAE--ALAEEFG--GVNIEAIPL-----EDLEEALQEADIV 79 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHH--HHHHHHT--GCSEEEEEG-----GGHCHHHHTESEE
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHH--HHHHHcC--ccccceeeH-----HHHHHHHhhCCeE
Confidence 57899999996 99999999999999975 999999753322 2222221 123443333 3445667889999
Q ss_pred EEcccCC
Q 020608 82 FHLASPC 88 (323)
Q Consensus 82 ih~a~~~ 88 (323)
|++.+..
T Consensus 80 I~aT~~~ 86 (135)
T PF01488_consen 80 INATPSG 86 (135)
T ss_dssp EE-SSTT
T ss_pred EEecCCC
Confidence 9998653
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.3e-05 Score=64.43 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=73.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhcc----CCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALE----GADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
|||.|+|+||.+|+.++..|+..|+ +|++++|.............+. ..+....+... +| .+ .++++|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~--~d---~~-~l~~aD 74 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKIS--SD---LS-DVAGSD 74 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEEC--CC---HH-HhCCCC
Confidence 6899999999999999999999986 5999988431111101111111 11111111111 12 33 378999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
+||-+++.... ...+-.+.++.|+.-...+.+...+.+.+ .+|.+++.
T Consensus 75 iViitag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 75 IVIITAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred EEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 99999986422 12233567788999999999987776533 67777764
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00066 Score=59.38 Aligned_cols=120 Identities=17% Similarity=0.092 Sum_probs=78.1
Q ss_pred CCC-CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhc---cCCCCCeEEEE-ccCCCHhHHHHH
Q 020608 1 MSK-EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKAL---EGADTRLRLFQ-IDLLDYDAIAAA 74 (323)
Q Consensus 1 m~~-~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~-~Dl~~~~~~~~~ 74 (323)
|+| +++||.|+| +|.+|+.++..++..|. +|++++++++... .+.++.. ........+.. +| ++ .
T Consensus 1 ~~~~~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~~ld~~~~~~~~~~~~~I~~~~d------~~-~ 71 (321)
T PTZ00082 1 MTMIKRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GKALDISHSNVIAGSNSKVIGTNN------YE-D 71 (321)
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HHHHHHHhhhhccCCCeEEEECCC------HH-H
Confidence 554 457899999 59999999999999995 8888888765421 1222111 11111222222 22 32 4
Q ss_pred hcCCCEEEEcccCCccCCCC---CchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 75 VTGCTGVFHLASPCIVDKVE---DPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 75 ~~~~d~Vih~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
++++|+||.+++....+... -+..+.+..|+.-.+.+.+...+.+.+ .++++|-.
T Consensus 72 l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP 130 (321)
T PTZ00082 72 IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNP 130 (321)
T ss_pred hCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 68999999999874322110 034567778998889999998887755 67777754
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.6e-05 Score=66.26 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=63.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHH-HhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAA-AVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~V 81 (323)
++|+|.|.||||++|..|++.|+++ +++|..+.++.+...... ... .....+|+.+.++++. .++++|+|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~------~~~--~~l~~~~~~~~~~~~~~~~~~~DvV 108 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG------SVF--PHLITQDLPNLVAVKDADFSDVDAV 108 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch------hhC--ccccCccccceecCCHHHhcCCCEE
Confidence 4579999999999999999999988 679999887542211100 000 1112234433222222 25789999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccccccc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSIT 133 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~ 133 (323)
|-+.+. ..+.+++..+ +.+ .++|-.||.....
T Consensus 109 f~Alp~------------------~~s~~i~~~~-~~g-~~VIDlSs~fRl~ 140 (381)
T PLN02968 109 FCCLPH------------------GTTQEIIKAL-PKD-LKIVDLSADFRLR 140 (381)
T ss_pred EEcCCH------------------HHHHHHHHHH-hCC-CEEEEcCchhccC
Confidence 987643 1344556655 344 5899999875443
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=7e-05 Score=65.39 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=31.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
+|+|.|+| +|.+|+.++..|++.|++|++.+|++.
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 36899999 799999999999999999999998754
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00039 Score=60.70 Aligned_cols=172 Identities=14% Similarity=0.074 Sum_probs=101.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-------EEEEEecCCCcHHHHHHHhhccCC----CCCeEEEEccCCCHhHHHH
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-------TVHATVKNLSDERETAHLKALEGA----DTRLRLFQIDLLDYDAIAA 73 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~ 73 (323)
..||.|+|++|++|+.++..|+..|. +++++++.............+.+. ..+..+. + ...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~------~~~~ 75 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-T------DPEE 75 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-c------ChHH
Confidence 45899999999999999999998874 788888754211111111111111 0112211 1 1234
Q ss_pred HhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc-C-EEEEecccccccCCCCCCCCccccCCC-CC
Q 020608 74 AVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV-K-RVVVTSSISSITPSPKWPADKVKDEDC-WT 150 (323)
Q Consensus 74 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~~v~~SS~~~~~~~~~~~~~~~~~e~~-~~ 150 (323)
.++++|+||.+||...- ...+-.+.+..|..-.+.+...+.+++. + .++.+|-- +.-.. ...-+.. -.
T Consensus 76 ~~~daDvVVitAG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP--vDv~t-----~v~~k~s~g~ 146 (323)
T TIGR01759 76 AFKDVDAALLVGAFPRK--PGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP--ANTNA-----LIASKNAPDI 146 (323)
T ss_pred HhCCCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc--HHHHH-----HHHHHHcCCC
Confidence 57789999999997422 2345567889999999999999988864 4 44444432 11000 0000000 00
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
.+ ....|.+.+..-++-...++..+++...++-..|+|.+..
T Consensus 147 p~------~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 188 (323)
T TIGR01759 147 PP------KNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN 188 (323)
T ss_pred CH------HHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC
Confidence 00 0224445555556666666677888888877788887654
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00064 Score=55.37 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=68.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc-----------------HHHHHHHhhccCCCC--CeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD-----------------ERETAHLKALEGADT--RLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~ 62 (323)
++.++|+|.| .|.+|+++++.|+..|. ++++++++.-. .......+.+...++ +++.+.
T Consensus 19 l~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 19 LLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred hcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 4567999999 59999999999999996 78888765211 111111223333233 344444
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..++ .+.+.++++++|+||.+... + ..-..+.+.|++.++ .+|+.++.
T Consensus 98 ~~i~-~~~~~~~~~~~D~Vi~~~d~---------~--------~~r~~l~~~~~~~~i-p~i~~~~~ 145 (202)
T TIGR02356 98 ERVT-AENLELLINNVDLVLDCTDN---------F--------ATRYLINDACVALGT-PLISAAVV 145 (202)
T ss_pred hcCC-HHHHHHHHhCCCEEEECCCC---------H--------HHHHHHHHHHHHcCC-CEEEEEec
Confidence 5554 35677888999999988632 1 122335667788774 67777655
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.8e-05 Score=72.10 Aligned_cols=166 Identities=16% Similarity=0.210 Sum_probs=112.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCE-EEEEecCCCcHHHHHH-HhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERETAH-LKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
-|..+|+||-|..|-.|+..|.++|.+ ++...|+.-+..-... ....+..+..+.+-..|++..+....+++
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl~ 1847 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKLG 1847 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhcc
Confidence 367899999999999999999999985 5555565433222111 11222223344555578887777777766
Q ss_pred CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 77 GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
-+-.|||+|+...-. .+.+++...-+.-+.+|.+|=...++.+ .+-||.+||.+.-.++.+.
T Consensus 1848 ~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~GQ------------ 1915 (2376)
T KOG1202|consen 1848 PVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAGQ------------ 1915 (2376)
T ss_pred cccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCcc------------
Confidence 347889999754211 1344455555566788999888888875 5789999998555555542
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTV 192 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v 192 (323)
+-||.+.-+.|+++++-. ..|++-+.|--|.|
T Consensus 1916 ---------tNYG~aNS~MERiceqRr-~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1916 ---------TNYGLANSAMERICEQRR-HEGFPGTAIQWGAI 1947 (2376)
T ss_pred ---------cccchhhHHHHHHHHHhh-hcCCCcceeeeecc
Confidence 339999999999998754 56887777755444
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00023 Score=70.74 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=57.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-CE-------------EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-YT-------------VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 69 (323)
+||+|+|.|+ |+||+..++.|++.. .+ |.+.+++..+.. +..+. .++++.+..|+.|.+
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~--~la~~----~~~~~~v~lDv~D~e 640 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAK--ETVEG----IENAEAVQLDVSDSE 640 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHH--HHHHh----cCCCceEEeecCCHH
Confidence 4789999996 999999999998753 33 666655432211 11111 135678899999999
Q ss_pred HHHHHhcCCCEEEEcccC
Q 020608 70 AIAAAVTGCTGVFHLASP 87 (323)
Q Consensus 70 ~~~~~~~~~d~Vih~a~~ 87 (323)
++.++++++|+||.+...
T Consensus 641 ~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 641 SLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHhhcCCCEEEECCCc
Confidence 999999999999999864
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00035 Score=61.09 Aligned_cols=176 Identities=14% Similarity=0.050 Sum_probs=102.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC-------EEEEEecCCCcHHHHHHHhhccCC----CCCeEEEEccCCCHh
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY-------TVHATVKNLSDERETAHLKALEGA----DTRLRLFQIDLLDYD 69 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~ 69 (323)
|+ .++||.|+|++|.+|+.++..|+..|. ++..+++++...........+.+. ..+..+. .
T Consensus 1 ~~-~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~------ 72 (326)
T PRK05442 1 MK-APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-D------ 72 (326)
T ss_pred CC-CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-c------
Confidence 44 567999999999999999999988663 788887754211111111111110 0122211 1
Q ss_pred HHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCCCccccCC
Q 020608 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 70 ~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
...+.++++|+||-+||...- ...+-.+.+..|..-.+.+.....++. -..++.+|.- + .-.. . ..-+.
T Consensus 73 ~~y~~~~daDiVVitaG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP-v-Dv~t----~-v~~k~ 143 (326)
T PRK05442 73 DPNVAFKDADVALLVGARPRG--PGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP-A-NTNA----L-IAMKN 143 (326)
T ss_pred ChHHHhCCCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc-h-HHHH----H-HHHHH
Confidence 123457789999999986432 234556788999999999999988854 3356666642 1 0000 0 00000
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
.+..| +....|.+-+..-++-...++..+++...++...|+|.+..
T Consensus 144 s~g~p-----~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~ 189 (326)
T PRK05442 144 APDLP-----AENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA 189 (326)
T ss_pred cCCCC-----HHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC
Confidence 00000 00224445555556666666677888888877777887643
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00069 Score=50.31 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=54.7
Q ss_pred eEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCC-cHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLS-DERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||.|+||||++|+.|++.|++.- .+++.+..+.. ................+..+ .+ .+.+. +.++|+||.|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~-~~~~~----~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSV--ED-ADPEE----LSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBE--EE-TSGHH----HTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeE--ee-cchhH----hhcCCEEEec
Confidence 68999999999999999999864 46555544433 22221221110000011222 22 23332 3789999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
.+. ..+..+...+.+.|+ ++|=.|+.
T Consensus 74 ~~~------------------~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 74 LPH------------------GASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp SCH------------------HHHHHHHHHHHHTTS-EEEESSST
T ss_pred Cch------------------hHHHHHHHHHhhCCc-EEEeCCHH
Confidence 743 124456666667765 66666655
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=62.67 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=59.1
Q ss_pred CCCCC-ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 1 MSKEA-EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 1 m~~~~-~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
|++++ ..++|-|||||.|.-++++|+.+|..-.+..|+..+. ..+.+. .++... ..++-+++.+++.+++.+
T Consensus 1 ~~~e~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl---~~l~~~--LG~~~~--~~p~~~p~~~~~~~~~~~ 73 (382)
T COG3268 1 MPMEREYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKL---DALRAS--LGPEAA--VFPLGVPAALEAMASRTQ 73 (382)
T ss_pred CCCCcceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHH---HHHHHh--cCcccc--ccCCCCHHHHHHHHhcce
Confidence 44443 4699999999999999999999999887777864322 222211 122333 344445888999999999
Q ss_pred EEEEcccCCc
Q 020608 80 GVFHLASPCI 89 (323)
Q Consensus 80 ~Vih~a~~~~ 89 (323)
+|+||+|+..
T Consensus 74 VVlncvGPyt 83 (382)
T COG3268 74 VVLNCVGPYT 83 (382)
T ss_pred EEEecccccc
Confidence 9999999863
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00024 Score=62.65 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=46.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC---EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY---TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|++|+|.||||++|+.|++.|.+++| ++..+.+..+...... + .+......|+.+. .++++|+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~----~----~g~~i~v~d~~~~-----~~~~vDvV 67 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS----F----KGKELKVEDLTTF-----DFSGVDIA 67 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee----e----CCceeEEeeCCHH-----HHcCCCEE
Confidence 47999999999999999999999876 4577776543222111 1 1123344455432 24689999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|-+++.
T Consensus 68 f~A~g~ 73 (334)
T PRK14874 68 LFSAGG 73 (334)
T ss_pred EECCCh
Confidence 988754
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00016 Score=63.52 Aligned_cols=98 Identities=22% Similarity=0.288 Sum_probs=57.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC---EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY---TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG 77 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (323)
|+ +|++|.|+||||++|..|++.|.+++| ++..+ ++.++..+ .+... + ...++.+.+.. + +++
T Consensus 1 m~-~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~-----~l~~~--~---~~l~~~~~~~~-~-~~~ 66 (336)
T PRK05671 1 MS-QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGH-----SVPFA--G---KNLRVREVDSF-D-FSQ 66 (336)
T ss_pred CC-CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCC-----eeccC--C---cceEEeeCChH-H-hcC
Confidence 55 568999999999999999999998776 33344 33222111 01110 1 12333333322 2 478
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccccc
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISS 131 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~ 131 (323)
+|+||-+++.. -...++..+.+.|+ ++|=.||...
T Consensus 67 vD~vFla~p~~------------------~s~~~v~~~~~~G~-~VIDlS~~fR 101 (336)
T PRK05671 67 VQLAFFAAGAA------------------VSRSFAEKARAAGC-SVIDLSGALP 101 (336)
T ss_pred CCEEEEcCCHH------------------HHHHHHHHHHHCCC-eEEECchhhc
Confidence 99999876420 12336666666664 6777777643
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00048 Score=63.65 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=57.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 84 (323)
|+|+|.|+ |.+|+++++.|.+.|++|+++.+++.. .+.+.. ..++.++.+|.++.+.++++ ++++|.||-+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~---~~~~~~----~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEER---LRRLQD----RLDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHH---HHHHHh----hcCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 58999997 999999999999999999999886432 222221 12578889999999999888 7889999877
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 73 ~ 73 (453)
T PRK09496 73 T 73 (453)
T ss_pred c
Confidence 5
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0011 Score=57.59 Aligned_cols=172 Identities=20% Similarity=0.108 Sum_probs=99.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
|||.|+|++|.+|+.++-.|+..+ .++++++++...... ..+.+........... ..+++.+.++++|+||-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~a----lDL~~~~~~~~i~~~~--~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVA----ADLSHINTPAKVTGYL--GPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceee----hHhHhCCCcceEEEec--CCCchHHhcCCCCEEEE
Confidence 589999999999999999999888 478888775211111 1111111111111110 11234456789999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccccccc-CCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSIT-PSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
+||...- ....-.+.++.|..-.+.+.+...+++.+ .++.+|--.-.. .-.. ........ ..+ ...
T Consensus 75 taG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t---~~~~~~s~-~p~------~rv 142 (310)
T cd01337 75 PAGVPRK--PGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAA---EVLKKAGV-YDP------KRL 142 (310)
T ss_pred eCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHH---HHHHHhcC-CCH------HHE
Confidence 9997432 22345678899999999999999888744 555555441000 0000 00000000 000 012
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCC
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPV 196 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~ 196 (323)
.|.+-+-.-++-...++..+++...++ +.|+|.+
T Consensus 143 iG~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 143 FGVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred EeeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 344434445555566667788777777 8889987
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0015 Score=49.49 Aligned_cols=105 Identities=12% Similarity=0.189 Sum_probs=67.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHH----------------HH-HHHhhccC--CCCCeEEEEcc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDER----------------ET-AHLKALEG--ADTRLRLFQID 64 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----------------~~-~~~~~~~~--~~~~~~~~~~D 64 (323)
.++|+|.|+ |.+|+.+++.|+..|. ++++++...-... +. ...+.+.. +..+++.+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 579999995 9999999999999997 6777763321100 00 11111222 23356667777
Q ss_pred CCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 65 LLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 65 l~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+ +.+.+.++++++|+||.+... ...-..+.+.|++.+. ++|+.++.
T Consensus 81 ~-~~~~~~~~~~~~d~vi~~~d~-----------------~~~~~~l~~~~~~~~~-p~i~~~~~ 126 (135)
T PF00899_consen 81 I-DEENIEELLKDYDIVIDCVDS-----------------LAARLLLNEICREYGI-PFIDAGVN 126 (135)
T ss_dssp C-SHHHHHHHHHTSSEEEEESSS-----------------HHHHHHHHHHHHHTT--EEEEEEEE
T ss_pred c-ccccccccccCCCEEEEecCC-----------------HHHHHHHHHHHHHcCC-CEEEEEee
Confidence 7 556678888999999988632 2223346677888874 78877765
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0019 Score=56.29 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=74.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccC----CCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEG----ADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
+||.|.|+ |.+|+.++..|+..| ++|++++|+...... ....+.+ .........+ +. + .+.++|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~--~a~dL~~~~~~~~~~~~i~~~---~~---~-~l~~aD 70 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEG--EALDLEDALAFLPSPVKIKAG---DY---S-DCKDAD 70 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhH--hHhhHHHHhhccCCCeEEEcC---CH---H-HhCCCC
Confidence 47999995 999999999999999 689999997644322 1222211 0112222222 22 2 357899
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
+||.+++....+ ..+-.+.++.|..-.+.+.+..++++.+ .++.+|.
T Consensus 71 IVIitag~~~~~--g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 71 IVVITAGAPQKP--GETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred EEEEccCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 999999874332 2344568889999999999999888744 5555553
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00048 Score=60.93 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=60.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEE-EccCCCHhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLF-QIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~V 81 (323)
+|++|+|+||||++|+.+++.|++. +++++++.++.+........ . +.+... ..++.+.+.. .++++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~--~----~~~~~~~~~~~~~~~~~--~~~~vD~V 72 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDV--H----PHLRGLVDLVLEPLDPE--ILAGADVV 72 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHh--C----cccccccCceeecCCHH--HhcCCCEE
Confidence 3589999999999999999999986 67888877643221111110 0 111111 1233333332 45679999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSI 132 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~ 132 (323)
|-|... .....++..+.+.| +++|=.|+....
T Consensus 73 f~alP~------------------~~~~~~v~~a~~aG-~~VID~S~~fR~ 104 (343)
T PRK00436 73 FLALPH------------------GVSMDLAPQLLEAG-VKVIDLSADFRL 104 (343)
T ss_pred EECCCc------------------HHHHHHHHHHHhCC-CEEEECCcccCC
Confidence 887642 11234555555555 578888876443
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.012 Score=44.95 Aligned_cols=187 Identities=15% Similarity=0.144 Sum_probs=101.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC--C-HhH----HHHHhc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL--D-YDA----IAAAVT 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~-~~~----~~~~~~ 76 (323)
+-.+|+|-||-|-+|+++++.|..++|-|.-++....... .--..+.+|-. . .+. ..+.+.
T Consensus 2 sagrVivYGGkGALGSacv~~FkannywV~siDl~eNe~A------------d~sI~V~~~~swtEQe~~v~~~vg~sL~ 69 (236)
T KOG4022|consen 2 SAGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA------------DSSILVDGNKSWTEQEQSVLEQVGSSLQ 69 (236)
T ss_pred CCceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc------------cceEEecCCcchhHHHHHHHHHHHHhhc
Confidence 4478999999999999999999999998887765432111 01122333321 1 111 112222
Q ss_pred --CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEeccc-ccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSI-SSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~-~~~~~~~~~~~~~~~~e~ 147 (323)
++|.||..||-..... ..++.+.+++--+....--...+.++ +.+-++-.... .+..+.++.
T Consensus 70 gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gTPgM--------- 140 (236)
T KOG4022|consen 70 GEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGTPGM--------- 140 (236)
T ss_pred ccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCCCcc---------
Confidence 6899999998653322 12223334433333222222222222 22233333333 122222211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-Cc----cEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-GL----DVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~----~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
-.||..|.+...++..++.+. |+ ..+.|-|-..-.|..+.+ +|+.
T Consensus 141 ------------IGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKw------------------MP~A 190 (236)
T KOG4022|consen 141 ------------IGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKW------------------MPNA 190 (236)
T ss_pred ------------cchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCcccccc------------------CCCC
Confidence 239999999999999987663 44 344555666666654322 1222
Q ss_pred CCC-cccHHHHHHHHHHhhc
Q 020608 223 FMG-SVHFKDVALAHILVYE 241 (323)
Q Consensus 223 ~~~-~i~v~D~a~~~~~~~~ 241 (323)
.+. |....-++..++.-..
T Consensus 191 DfssWTPL~fi~e~flkWtt 210 (236)
T KOG4022|consen 191 DFSSWTPLSFISEHFLKWTT 210 (236)
T ss_pred cccCcccHHHHHHHHHHHhc
Confidence 222 6667777777776554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0014 Score=49.06 Aligned_cols=97 Identities=19% Similarity=0.172 Sum_probs=68.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
+++++++.| +| -|.+++..|.+.|++|++++.++... +..++ ....++.+|+.+++ .++.+++|.|+-
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV---~~a~~-----~~~~~v~dDlf~p~--~~~y~~a~liys 83 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAV---EKAKK-----LGLNAFVDDLFNPN--LEIYKNAKLIYS 83 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHH---HHHHH-----hCCeEEECcCCCCC--HHHHhcCCEEEE
Confidence 457899999 47 88999999999999999999876322 22222 15788999999876 345567888875
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+= ++.++ ..-+++.|++.++.-+|..=|.
T Consensus 84 ir----------pp~el-------~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 84 IR----------PPRDL-------QPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred eC----------CCHHH-------HHHHHHHHHHcCCCEEEEcCCC
Confidence 43 22322 3457888888887766665543
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0016 Score=54.15 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=67.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCC-----------------cHHHHHHHhhccCCCC--CeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLS-----------------DERETAHLKALEGADT--RLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~ 62 (323)
++.++|+|.| .|.+|+++++.|+..|. ++++++.+.- ........+.+...++ +++.+.
T Consensus 19 L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 19 LKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 3567999999 59999999999999996 6666532210 1111111222333233 455566
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
.++ +.+.+.++++++|+||.+... + ..-..+.+.|++.++ .+|+.+..
T Consensus 98 ~~i-~~~~~~~~~~~~DvVi~~~d~---------~--------~~r~~l~~~~~~~~i-p~i~~g~~ 145 (228)
T cd00757 98 ERL-DAENAEELIAGYDLVLDCTDN---------F--------ATRYLINDACVKLGK-PLVSGAVL 145 (228)
T ss_pred cee-CHHHHHHHHhCCCEEEEcCCC---------H--------HHHHHHHHHHHHcCC-CEEEEEec
Confidence 666 345677888899999988632 1 122346667888774 77777654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0013 Score=57.10 Aligned_cols=115 Identities=18% Similarity=0.110 Sum_probs=74.7
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||.|+|++|.||+.++-.|+..+. +++++++++..... ..+.+........... +.+++.+.++++|+||-+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a----~DL~~~~~~~~i~~~~--~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVA----ADLSHIPTAASVKGFS--GEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEE----chhhcCCcCceEEEec--CCCchHHHcCCCCEEEEe
Confidence 689999999999999999998875 78888876521111 1111111111111101 112244568899999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
||.... ....-.+.+..|..-.+.+.+...+++.+ .++.+|.-
T Consensus 75 aG~~~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 75 AGVPRK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCCCCC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 997433 23345668889999999999998888744 45555543
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0008 Score=57.04 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=45.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
+++|.|+|++|.+|+.+++.+.+. +.+++++......... . . -..++...++++++++++|+||+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~--~----------~--~~~~i~~~~dl~~ll~~~DvVid 66 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV--G----------Q--GALGVAITDDLEAVLADADVLID 66 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc--c----------c--CCCCccccCCHHHhccCCCEEEE
Confidence 479999999999999999998864 6888776543211110 0 0 11233334456666778999999
Q ss_pred ccc
Q 020608 84 LAS 86 (323)
Q Consensus 84 ~a~ 86 (323)
++.
T Consensus 67 ~t~ 69 (257)
T PRK00048 67 FTT 69 (257)
T ss_pred CCC
Confidence 984
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0052 Score=53.43 Aligned_cols=170 Identities=15% Similarity=0.071 Sum_probs=96.5
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHh--h-ccCCC-CCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLK--A-LEGAD-TRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~--~-~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
||.|.|+ |.||+.++..|+..+. ++++++.+.+.... +.++ . ....+ ..+....+| . +.++++|+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g-~a~DL~~~~~~~~~~~~~i~~~~---y----~~~~~aDi 71 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEG-EALDFHHATALTYSTNTKIRAGD---Y----DDCADADI 71 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhH-HHHHHHhhhccCCCCCEEEEECC---H----HHhCCCCE
Confidence 6889998 9999999999998874 78888876533221 1111 1 11111 234444433 2 34678999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
||-+||...-+...++-.+.+..|..-.+.+.....+++...++.+-|- -+.-.. ....+...+ .+ ..
T Consensus 72 vvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN-PvDv~t----~~~~k~sg~-p~------~r 139 (307)
T cd05290 72 IVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN-PLDIAV----YIAATEFDY-PA------NK 139 (307)
T ss_pred EEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC-cHHHHH----HHHHHHhCc-Ch------hh
Confidence 9999997433221111356889999999999999988875544444332 111000 000000000 00 01
Q ss_pred chHH-HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 161 WYPL-SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 161 ~Y~~-sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
..|. +-+-.-++-...++..+++...++.. |+|.+..
T Consensus 140 viG~gt~LDs~R~~~~la~~l~v~~~~V~~~-ViGeHGd 177 (307)
T cd05290 140 VIGTGTMLDTARLRRIVADKYGVDPKNVTGY-VLGEHGS 177 (307)
T ss_pred eecccchHHHHHHHHHHHHHhCCCcccEEEE-EEecCCC
Confidence 1222 23333444445556668888888765 8887643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00026 Score=64.03 Aligned_cols=174 Identities=11% Similarity=0.041 Sum_probs=102.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHC---CC----EEEEEecCCCcHHHHHHHhhccCC----CCCeEEEEccCCCHhHHHHH
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER---RY----TVHATVKNLSDERETAHLKALEGA----DTRLRLFQIDLLDYDAIAAA 74 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~---g~----~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~ 74 (323)
-+|+||||+|.||.+|+-.+++= |. .+++++..............+.+. ...+.+. .| ..+.
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~------~~ea 196 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TD------LDVA 196 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-EC------CHHH
Confidence 47999999999999999999862 32 344454432222222222222221 1122222 21 1356
Q ss_pred hcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc--CEEEEecccccccCCCCCCCCccccCCCCCCh
Q 020608 75 VTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV--KRVVVTSSISSITPSPKWPADKVKDEDCWTDE 152 (323)
Q Consensus 75 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~ 152 (323)
++++|+||-+||...- ....-.+.++.|..-...+..+..++.. .+++.+.|- -+.-.. ...-+..+.-|
T Consensus 197 ~~daDvvIitag~prk--~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tN-PvD~~t-----~i~~k~apgiP 268 (452)
T cd05295 197 FKDAHVIVLLDDFLIK--EGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRT-FLNLKT-----SILIKYAPSIP 268 (452)
T ss_pred hCCCCEEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCC-cHHHHH-----HHHHHHcCCCC
Confidence 7899999999987432 2234566889999999999999887765 577776653 111000 00000000000
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCC
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPP 199 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~ 199 (323)
+.+..|.+.+...++....+++.+++...|+-..|+|.+...
T Consensus 269 -----~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~s 310 (452)
T cd05295 269 -----RKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGGN 310 (452)
T ss_pred -----HHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCCc
Confidence 113355555665666666777788988888888899976543
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0023 Score=55.11 Aligned_cols=112 Identities=20% Similarity=0.097 Sum_probs=72.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccC----CCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEG----ADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
+||.|+|+ |+||+.++..|+.++ .+++++++......- .. ..+.+ .... ..+.+| .+ -+.++++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G-~a-~DL~~~~~~~~~~-~~i~~~-~~----y~~~~~aD 71 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEG-VA-LDLSHAAAPLGSD-VKITGD-GD----YEDLKGAD 71 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccc-hh-cchhhcchhccCc-eEEecC-CC----hhhhcCCC
Confidence 58999999 999999999998775 489998887322111 11 11111 1111 222333 22 23367899
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
+|+-+||...-+. ..-.+.++.|..-...+.....+++.+-++.+-|
T Consensus 72 iVvitAG~prKpG--mtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 72 IVVITAGVPRKPG--MTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred EEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 9999998743322 2335688999999999999988887554444433
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0027 Score=52.13 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc----------------HHHHHHHhhccCC--CCCeEEEEc
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD----------------ERETAHLKALEGA--DTRLRLFQI 63 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~ 63 (323)
++..+|+|.|+ |.+|++++..|+..|. ++++++.+.-. .......+.+... ..+++.+..
T Consensus 26 L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 26 LKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred HhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 35679999995 9999999999999997 58777665210 0111111222221 234555666
Q ss_pred cCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEeccc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSI 129 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~ 129 (323)
.+++ +.+.++++++|+||.+.-. + .....+.+.|.+. + ..+|+.+..
T Consensus 105 ~i~~-~~~~~~~~~~DvVI~a~D~---------~--------~~r~~l~~~~~~~~~-~p~I~~~~~ 152 (212)
T PRK08644 105 KIDE-DNIEELFKDCDIVVEAFDN---------A--------ETKAMLVETVLEHPG-KKLVAASGM 152 (212)
T ss_pred ecCH-HHHHHHHcCCCEEEECCCC---------H--------HHHHHHHHHHHHhCC-CCEEEeehh
Confidence 6654 4567788899999988521 1 1223455667666 5 477776554
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0048 Score=53.82 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=72.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHH-HHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERE-TAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
|+|.|.|+ |.+|+.++..|+..| .+|.+++++...... ...+..............+ + + +.++++|+||
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~---d---~-~~l~~aDiVi 72 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAG---D---Y-ADCKGADVVV 72 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeC---C---H-HHhCCCCEEE
Confidence 47999997 999999999999999 589999987643321 1111111111112222222 2 2 2378999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEec
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTS 127 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 127 (323)
-+++.... ...+..+.+..|+.-...+.+...+++.+ .++.++
T Consensus 73 ita~~~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 73 ITAGANQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99986422 23345567888999999999998877644 444443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0022 Score=52.09 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=66.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHH-------------------HHHHHhhccCCCC--CeEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDER-------------------ETAHLKALEGADT--RLRLF 61 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-------------------~~~~~~~~~~~~~--~~~~~ 61 (323)
+..+|+|.|++| +|+++++.|+..|. ++++++.+.-... .....+.+...++ +++.+
T Consensus 18 ~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~ 96 (198)
T cd01485 18 RSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV 96 (198)
T ss_pred hhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 467999999755 99999999999996 6777764321100 0011122222233 44555
Q ss_pred EccCCC-HhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 62 QIDLLD-YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 62 ~~Dl~~-~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..++.+ .+...+.++++|+||.+.. +. .....+.+.|++.++ ++|+.++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~dvVi~~~d---------~~--------~~~~~ln~~c~~~~i-p~i~~~~~ 147 (198)
T cd01485 97 EEDSLSNDSNIEEYLQKFTLVIATEE---------NY--------ERTAKVNDVCRKHHI-PFISCATY 147 (198)
T ss_pred ecccccchhhHHHHHhCCCEEEECCC---------CH--------HHHHHHHHHHHHcCC-CEEEEEee
Confidence 556643 4556777889999997642 11 223345577888875 78888776
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0014 Score=60.61 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=56.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vi 82 (323)
.+++++|.|+ |.+|+.+++.|.+.|++|+++.+++... +.+.. ...++..+.||.++.+.++++ ++++|.||
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~---~~~~~---~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERA---EELAE---ELPNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH---HHHHH---HCCCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 4689999997 9999999999999999999998765322 22211 123577899999999888654 46789888
Q ss_pred Ecc
Q 020608 83 HLA 85 (323)
Q Consensus 83 h~a 85 (323)
-+.
T Consensus 303 ~~~ 305 (453)
T PRK09496 303 ALT 305 (453)
T ss_pred ECC
Confidence 654
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=57.81 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=67.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCC-----------------cHHHHHHHhhccCCCC--CeEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLS-----------------DERETAHLKALEGADT--RLRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~ 63 (323)
+.++|+|.|+ |.+|++++..|+..|. ++++++++.- ........+.+....+ +++.+..
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 5678999985 9999999999999997 7888876510 1111111222322233 3445555
Q ss_pred cCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
.+++ +.+.++++++|+||++... +. .-..+.++|++.++ .+|+.+..
T Consensus 213 ~~~~-~~~~~~~~~~D~Vv~~~d~---------~~--------~r~~ln~~~~~~~i-p~i~~~~~ 259 (376)
T PRK08762 213 RVTS-DNVEALLQDVDVVVDGADN---------FP--------TRYLLNDACVKLGK-PLVYGAVF 259 (376)
T ss_pred cCCh-HHHHHHHhCCCEEEECCCC---------HH--------HHHHHHHHHHHcCC-CEEEEEec
Confidence 5543 4567788899999998732 11 12235567888874 78887655
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0006 Score=50.85 Aligned_cols=98 Identities=17% Similarity=0.269 Sum_probs=55.9
Q ss_pred ceEEEeccccHHHHHHHHHHHH-CCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLE-RRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
|||.|.|++|-+|+.+++.+.+ .++++.+...+..+...-+..-.+.. .. ...+.-.++++++++.+|+||.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~----~~--~~~~~v~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAG----IG--PLGVPVTDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCT----SS--T-SSBEBS-HHHHTTH-SEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhC----cC--CcccccchhHHHhcccCCEEEEc
Confidence 5899999999999999999999 68887666543321110000000000 00 11111125678888889999998
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
.. -..+...++.+.++++ ++|.-+|
T Consensus 75 T~------------------p~~~~~~~~~~~~~g~-~~ViGTT 99 (124)
T PF01113_consen 75 TN------------------PDAVYDNLEYALKHGV-PLVIGTT 99 (124)
T ss_dssp S-------------------HHHHHHHHHHHHHHT--EEEEE-S
T ss_pred CC------------------hHHhHHHHHHHHhCCC-CEEEECC
Confidence 62 2345557777777763 4444333
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0021 Score=56.17 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=72.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
|+||.|+|+ |.+|+.++..|+..|. +|++++++++.... ... .+.... ........++...+++ .++++|+||.
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~-~~~-dl~~~~-~~~~~~~~i~~~~d~~-~~~~aDiVii 76 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQG-KAL-DIAEAA-PVEGFDTKITGTNDYE-DIAGSDVVVI 76 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHH-HHH-HHHhhh-hhcCCCcEEEeCCCHH-HHCCCCEEEE
Confidence 579999998 9999999999998875 99999986643321 111 111100 0000001111111232 3689999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
+++.... ....-.+.+..|+.-...+++...+.+.+ .+|++|..
T Consensus 77 ~~~~p~~--~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 121 (307)
T PRK06223 77 TAGVPRK--PGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNP 121 (307)
T ss_pred CCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 9976322 12233456678888888888888777544 46666543
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=56.23 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=75.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhh--ccC-CCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKA--LEG-ADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~--~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
+.+||.|+|| |.+|+.++..|+..| .++++++++.+.... ..++- ... ...... +.+ ..+++ .++++|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g-~~lDl~~~~~~~~~~~~-i~~----~~d~~-~l~~AD 75 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQG-KALDLKHFSTLVGSNIN-ILG----TNNYE-DIKDSD 75 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchh-HHHHHhhhccccCCCeE-EEe----CCCHH-HhCCCC
Confidence 4579999997 999999999999888 688888887644321 11211 100 011111 111 12344 568999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCE-EEEeccc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR-VVVTSSI 129 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~SS~ 129 (323)
+||.+++....+ ...-.+.+..|..-.+.+.+...+.+.+. ++++|..
T Consensus 76 iVVitag~~~~~--g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 76 VVVITAGVQRKE--EMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred EEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 999999864332 23345677889888888999888876554 6666654
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00043 Score=59.66 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=36.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcH
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE 42 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 42 (323)
|++.+++|.|.|+ |.+|+.++..|+..|++|++.+++++..
T Consensus 1 ~~~~~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~ 41 (286)
T PRK07819 1 MSDAIQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELA 41 (286)
T ss_pred CCCCccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 6666789999996 9999999999999999999999986543
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0033 Score=55.89 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=67.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc-----------------HHHHHHHhhccCCCC--CeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD-----------------ERETAHLKALEGADT--RLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~ 62 (323)
++..+|+|.|+ |.+|++++..|+..|. ++++++...-. .......+.+...++ +++.+.
T Consensus 26 L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 26 LFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 35679999996 9999999999999996 67776644310 111122223333333 445555
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..++. +...++++++|+||.+... + ..-..+.++|.+.++ .+|+.++.
T Consensus 105 ~~i~~-~~~~~~~~~~DvVvd~~d~---------~--------~~r~~~n~~c~~~~i-p~v~~~~~ 152 (355)
T PRK05597 105 RRLTW-SNALDELRDADVILDGSDN---------F--------DTRHLASWAAARLGI-PHVWASIL 152 (355)
T ss_pred eecCH-HHHHHHHhCCCEEEECCCC---------H--------HHHHHHHHHHHHcCC-CEEEEEEe
Confidence 66653 4566778899999998731 1 112235566777774 67776654
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0042 Score=51.97 Aligned_cols=107 Identities=15% Similarity=0.054 Sum_probs=65.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHH-----------------HHHHHhhccCCCC--CeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDER-----------------ETAHLKALEGADT--RLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-----------------~~~~~~~~~~~~~--~~~~~~ 62 (323)
++..+|+|.|+ |.+|++++..|+..|. ++++++.+.-... .....+.+...++ +++.+.
T Consensus 22 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 22 LKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 35678999995 9999999999999995 6766654331111 1111122222233 344444
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..++ .+.+.++++++|+||.+... + .....+.++|.+.++ ++|+.++.
T Consensus 101 ~~i~-~~~~~~~~~~~DlVvd~~D~---------~--------~~r~~ln~~~~~~~i-p~v~~~~~ 148 (240)
T TIGR02355 101 AKLD-DAELAALIAEHDIVVDCTDN---------V--------EVRNQLNRQCFAAKV-PLVSGAAI 148 (240)
T ss_pred ccCC-HHHHHHHhhcCCEEEEcCCC---------H--------HHHHHHHHHHHHcCC-CEEEEEec
Confidence 4443 35577788999999988632 1 123345577888874 77776554
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=61.42 Aligned_cols=78 Identities=12% Similarity=-0.048 Sum_probs=52.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-CCC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-GCT 79 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d 79 (323)
|.+++|+|+|||++| +|...++.|++.|++|++.+++...... ..+.+.. .++.+..++.. .. .+. ++|
T Consensus 1 ~~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~--~~~~l~~--~g~~~~~~~~~--~~---~~~~~~d 70 (447)
T PRK02472 1 TEYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENP--EAQELLE--EGIKVICGSHP--LE---LLDEDFD 70 (447)
T ss_pred CCcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchh--HHHHHHh--cCCEEEeCCCC--HH---HhcCcCC
Confidence 778899999999977 9999999999999999998875432211 1122221 14444444321 11 123 389
Q ss_pred EEEEcccCC
Q 020608 80 GVFHLASPC 88 (323)
Q Consensus 80 ~Vih~a~~~ 88 (323)
.||.++|..
T Consensus 71 ~vV~s~gi~ 79 (447)
T PRK02472 71 LMVKNPGIP 79 (447)
T ss_pred EEEECCCCC
Confidence 999999864
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00084 Score=53.89 Aligned_cols=68 Identities=19% Similarity=0.105 Sum_probs=43.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||++.|.| +|-||+.|+++|++.||+|++-.|+.++...... +.+ .+. + ...+.+++.+..|+||-.
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a-~~l---~~~-------i-~~~~~~dA~~~aDVVvLA 67 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGPKALAAAA-AAL---GPL-------I-TGGSNEDAAALADVVVLA 67 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCChhHHHHHH-Hhh---ccc-------c-ccCChHHHHhcCCEEEEe
Confidence 46666555 8999999999999999999998776543332211 111 111 1 112345566778998866
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 68 V 68 (211)
T COG2085 68 V 68 (211)
T ss_pred c
Confidence 5
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0059 Score=50.86 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=65.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcH-----------------HHHHH-HhhccCCC--CCeEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDE-----------------RETAH-LKALEGAD--TRLRLFQ 62 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-----------------~~~~~-~~~~~~~~--~~~~~~~ 62 (323)
+..+|+|.|+ |.+|++++..|+..|. ++++++.+.-.. .+.+. .+.+...+ ..++.+.
T Consensus 26 ~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~ 104 (231)
T PRK08328 26 KKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV 104 (231)
T ss_pred hCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 5678999995 9999999999999996 677775332111 01111 11222222 3445555
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..+ +.+.+.++++++|+||.+... +. .-..+.++|++.++ ++|+.++.
T Consensus 105 ~~~-~~~~~~~~l~~~D~Vid~~d~---------~~--------~r~~l~~~~~~~~i-p~i~g~~~ 152 (231)
T PRK08328 105 GRL-SEENIDEVLKGVDVIVDCLDN---------FE--------TRYLLDDYAHKKGI-PLVHGAVE 152 (231)
T ss_pred ccC-CHHHHHHHHhcCCEEEECCCC---------HH--------HHHHHHHHHHHcCC-CEEEEeec
Confidence 555 345577788999999988632 11 12234456777774 77776665
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0039 Score=52.40 Aligned_cols=107 Identities=20% Similarity=0.125 Sum_probs=66.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHH-----------------HHHHhhccCCCC--CeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERE-----------------TAHLKALEGADT--RLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-----------------~~~~~~~~~~~~--~~~~~~ 62 (323)
++.++|+|.|+ |.+|+++++.|+..|. ++++++.+.-.... ....+.+...++ +++.+.
T Consensus 30 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred hcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 35689999997 9999999999999996 67766533211111 111122222233 455566
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..++ .+.+.++++++|+||.+... + ..-..+.++|++.+ ..+|+.++.
T Consensus 109 ~~i~-~~~~~~~~~~~DiVi~~~D~---------~--------~~r~~ln~~~~~~~-ip~v~~~~~ 156 (245)
T PRK05690 109 ARLD-DDELAALIAGHDLVLDCTDN---------V--------ATRNQLNRACFAAK-KPLVSGAAI 156 (245)
T ss_pred ccCC-HHHHHHHHhcCCEEEecCCC---------H--------HHHHHHHHHHHHhC-CEEEEeeec
Confidence 6664 44567788999999988631 1 12234556777777 477775543
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0043 Score=56.28 Aligned_cols=170 Identities=13% Similarity=0.057 Sum_probs=99.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHC-------CC--EEEEEecCCCcHHHHHHHhhccCC----CCCeEEEEccCCCHhHHH
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER-------RY--TVHATVKNLSDERETAHLKALEGA----DTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~-------g~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~ 72 (323)
-||.|+|++|.+|++++-.|+.. |. +++.++++.+.... +.+ .+.+. ..++.+..+ +.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G-~am-DL~daa~~~~~~v~i~~~---~y---- 171 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEG-VAM-ELEDSLYPLLREVSIGID---PY---- 171 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHH-HHH-HHHHhhhhhcCceEEecC---CH----
Confidence 48999999999999999999988 64 78888887654322 111 12111 112221112 22
Q ss_pred HHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhh-CCcC-EEEEecccccccCCCCCCCCccccCCCCC
Q 020608 73 AAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKA-LGVK-RVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 73 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
+.++++|+||-+||...- ...+-.+.++.|+.-.+.+.....+ .+.. .+|.+|.-.-+... .........
T Consensus 172 e~~kdaDiVVitAG~prk--pG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~------v~~k~sg~~ 243 (444)
T PLN00112 172 EVFQDAEWALLIGAKPRG--PGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNAL------ICLKNAPNI 243 (444)
T ss_pred HHhCcCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHH------HHHHHcCCC
Confidence 346789999999997432 2334567889999999999999988 4533 56666643100000 000000000
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
+ +...-.-+.+..-++-...+++.+++...++-..|+|.+..
T Consensus 244 -~-----~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd 285 (444)
T PLN00112 244 -P-----AKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 285 (444)
T ss_pred -C-----cceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC
Confidence 0 00111222333344445556667888888888889997654
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=52.08 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHH-----------------HHHHHhhccCCCC--CeEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDER-----------------ETAHLKALEGADT--RLRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-----------------~~~~~~~~~~~~~--~~~~~~~ 63 (323)
+.++|+|.|+ |.+|+++++.|+..|. ++++++...-... .....+.+...++ .++.+..
T Consensus 20 ~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 20 RSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred HhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 5679999996 5599999999999996 5777754321110 1111122333233 4455555
Q ss_pred cCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
.+.+ ...+.++++|+||.+... . ..-..+-+.|++.++ .+|+.++.
T Consensus 99 ~~~~--~~~~~~~~~dvVi~~~~~---------~--------~~~~~ln~~c~~~~i-p~i~~~~~ 144 (197)
T cd01492 99 DISE--KPEEFFSQFDVVVATELS---------R--------AELVKINELCRKLGV-KFYATGVH 144 (197)
T ss_pred Cccc--cHHHHHhCCCEEEECCCC---------H--------HHHHHHHHHHHHcCC-CEEEEEec
Confidence 5542 345677899999976421 1 122345577888885 77887776
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00093 Score=57.50 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=51.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+++++|+|. |.+|+.+++.|...|.+|++..|++.+. ...... +...+ +.+++.++++++|+||
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~---~~~~~~-----g~~~~-----~~~~l~~~l~~aDiVi 214 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADL---ARITEM-----GLIPF-----PLNKLEEKVAEIDIVI 214 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHC-----CCeee-----cHHHHHHHhccCCEEE
Confidence 56899999996 8899999999999999999998875321 111111 12211 2455777888999999
Q ss_pred Eccc
Q 020608 83 HLAS 86 (323)
Q Consensus 83 h~a~ 86 (323)
++..
T Consensus 215 nt~P 218 (287)
T TIGR02853 215 NTIP 218 (287)
T ss_pred ECCC
Confidence 9874
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=51.60 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=49.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
.++++++|+|+ |.+|+.+++.|++.| ++|++.+|++.... +..+.+.. . .+..+..+ ..++++++|+|
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~--~~~~~~~~---~--~~~~~~~~---~~~~~~~~Dvv 85 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAK--ALAERFGE---L--GIAIAYLD---LEELLAEADLI 85 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHH--HHHHHHhh---c--ccceeecc---hhhccccCCEE
Confidence 35689999997 999999999999996 78999988653322 21222211 0 01223333 33446789999
Q ss_pred EEcccCC
Q 020608 82 FHLASPC 88 (323)
Q Consensus 82 ih~a~~~ 88 (323)
|.+....
T Consensus 86 i~~~~~~ 92 (155)
T cd01065 86 INTTPVG 92 (155)
T ss_pred EeCcCCC
Confidence 9998764
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=51.94 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=47.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++.+++|+|+|+++.+|..+++.|.++|.+|++..|+. +++.+.+.++|+|
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-----------------------------~~l~~~l~~aDiV 91 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-----------------------------KNLKEHTKQADIV 91 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-----------------------------hhHHHHHhhCCEE
Confidence 35789999999977789999999999999998887641 3456678889999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|.+.+.
T Consensus 92 Isat~~ 97 (168)
T cd01080 92 IVAVGK 97 (168)
T ss_pred EEcCCC
Confidence 988865
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0018 Score=53.55 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=32.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (323)
|+|.|+||+|.+|+.++..|++.|++|++..|+++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~ 36 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEK 36 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHH
Confidence 479999999999999999999999999999887543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0087 Score=52.94 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=72.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCC---CCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGA---DTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+||.|+|+ |.||+.++..|+..+. ++.+++.+.+... .....+.+. ..... +.++ .+ ++ .++++|+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~--g~a~DL~~~~~~~~~~~-i~~~-~d---y~-~~~daDi 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLR--GEMLDLQHAAAFLPRTK-ILAS-TD---YA-VTAGSDL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhh--HHHHHHHhhhhcCCCCE-EEeC-CC---HH-HhCCCCE
Confidence 69999996 9999999999998874 7888888653221 111112111 11122 2211 12 22 2788999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
||-+||...-+ ..+-.+.+..|+.-.+.+.+...+++.+ .++.+|-
T Consensus 109 VVitAG~~~k~--g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 109 CIVTAGARQIP--GESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred EEECCCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999974322 2234568888999999999998887644 5555553
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0018 Score=47.65 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=51.5
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEccc
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHLAS 86 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~a~ 86 (323)
|+|.|. |-+|..+++.|.+.+.+|+++.+++.. .+.+.. .++.++.||.++++.++++ +++++.|+-+..
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~---~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPER---VEELRE-----EGVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHH---HHHHHH-----TTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHH---HHHHHh-----cccccccccchhhhHHhhcCccccCEEEEccC
Confidence 578886 899999999999977799999876422 222221 2578999999999998875 457888887653
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0094 Score=47.28 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=50.7
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC-EEEEEecCC---Cc-------------HHHHHHHhhccCCC--CCeEEEEccCCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNL---SD-------------ERETAHLKALEGAD--TRLRLFQIDLLD 67 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~-------------~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 67 (323)
+|+|.|+ |.+|++++..|+..|. ++++++.+. ++ .......+.+...+ .+++.+...++.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 5899995 9999999999999997 588887654 11 01111112222222 345555566544
Q ss_pred HhHHHHHhcCCCEEEEcc
Q 020608 68 YDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 68 ~~~~~~~~~~~d~Vih~a 85 (323)
+.+.++++++|+||.+.
T Consensus 80 -~~~~~~l~~~DlVi~~~ 96 (174)
T cd01487 80 -NNLEGLFGDCDIVVEAF 96 (174)
T ss_pred -hhHHHHhcCCCEEEECC
Confidence 55778889999999885
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0028 Score=54.04 Aligned_cols=113 Identities=15% Similarity=0.043 Sum_probs=73.0
Q ss_pred EEEeccccHHHHHHHHHHHHCC----CEEEEEecCCCcHHHH-HHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 8 VCVTGGSGCIGSWLVSLLLERR----YTVHATVKNLSDERET-AHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
|.|+||+|.+|..++..|+..| .+|.+++++....... ..+......... ..+.-.+++.+.++++|+||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~-----~~i~~~~d~~~~~~~aDiVv 75 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLAD-----IKVSITDDPYEAFKDADVVI 75 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccC-----cEEEECCchHHHhCCCCEEE
Confidence 5799999999999999999988 6899998876432221 112121111001 12221223456688999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEec
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTS 127 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 127 (323)
-+++....+. ..-......|+.-.+.+.+...+.+.+ .++.+|
T Consensus 76 ~t~~~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 76 ITAGVGRKPG--MGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred ECCCCCCCcC--CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9998653322 223456777999999999998887644 444544
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0022 Score=56.82 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=58.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHC-CCEEEEE-ecCCCcHHHHHHHhhccCCCCCeEEE-EccCCCHhHHHHHhcCCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER-RYTVHAT-VKNLSDERETAHLKALEGADTRLRLF-QIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
++|.|.||||++|..+++.|.+. +.+++.+ .++++........ . +.+... ..++.+. +.+++++++|+||
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~--~----~~l~~~~~~~~~~~-~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEV--H----PHLRGLVDLNLEPI-DEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHh--C----ccccccCCceeecC-CHHHhhcCCCEEE
Confidence 58999999999999999999977 5688754 4332111111100 0 011111 1112211 2234445799999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccccccc
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSIT 133 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~ 133 (323)
-|.+.. ....++..+.+.| +++|=.|+.....
T Consensus 74 ~alP~~------------------~s~~~~~~~~~~G-~~VIDlS~~fR~~ 105 (346)
T TIGR01850 74 LALPHG------------------VSAELAPELLAAG-VKVIDLSADFRLK 105 (346)
T ss_pred ECCCch------------------HHHHHHHHHHhCC-CEEEeCChhhhcC
Confidence 887431 2445666666666 5888888875443
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0024 Score=55.73 Aligned_cols=81 Identities=23% Similarity=0.117 Sum_probs=50.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHH-HH----HhhccCCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERET-AH----LKALEGADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
.++|.|.|+ |-+|+.++..|+..|++|++.++++...... .. +..+...+.........++-..++++++.++|
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 578999995 9999999999999999999999876432221 11 11111100000000112222234667888999
Q ss_pred EEEEccc
Q 020608 80 GVFHLAS 86 (323)
Q Consensus 80 ~Vih~a~ 86 (323)
.|+-+..
T Consensus 86 lViEavp 92 (321)
T PRK07066 86 FIQESAP 92 (321)
T ss_pred EEEECCc
Confidence 9999873
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0095 Score=48.38 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=54.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecC---CCcHHH------------HH-HHhhccCCC--CCeEEEEc
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKN---LSDERE------------TA-HLKALEGAD--TRLRLFQI 63 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~---~~~~~~------------~~-~~~~~~~~~--~~~~~~~~ 63 (323)
++.++|+|.|+ |.+|+.++..|+..|. ++++++++ .++... .+ ..+.+.... .+++.+..
T Consensus 19 L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 19 LEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 35689999996 8999999999999998 68888766 211111 00 111122212 34556666
Q ss_pred cCCCHhHHHHHhcCCCEEEEcc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
+++ .+.+.++++++|+||.+.
T Consensus 98 ~i~-~~~~~~~~~~~DlVi~a~ 118 (200)
T TIGR02354 98 KIT-EENIDKFFKDADIVCEAF 118 (200)
T ss_pred eCC-HhHHHHHhcCCCEEEECC
Confidence 665 456778889999999883
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0075 Score=53.85 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc-----------------HHHHHHHhhccCCC--CCeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD-----------------ERETAHLKALEGAD--TRLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-----------------~~~~~~~~~~~~~~--~~~~~~~ 62 (323)
++..+|+|.|+ |.+|++++..|+..|. ++++++.+.-. .......+.+...+ .+++.+.
T Consensus 39 l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 39 LHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 35678999995 9999999999999996 78777654211 11111112222222 3455666
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..++ .+.+.++++++|+||.|... ...-..+.+.|.+.++ .+|+.+..
T Consensus 118 ~~i~-~~~~~~~~~~~DlVid~~Dn-----------------~~~r~~in~~~~~~~i-P~v~~~~~ 165 (370)
T PRK05600 118 ERLT-AENAVELLNGVDLVLDGSDS-----------------FATKFLVADAAEITGT-PLVWGTVL 165 (370)
T ss_pred eecC-HHHHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEEe
Confidence 6665 45577788999999988632 1222234566777774 66766554
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.012 Score=51.33 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=73.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCC---CCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGA---DTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
-+||.|+|+ |.+|+.++-.|+..|. ++++++++.+... .....+.+. ......... .| ++. ++++|
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~--g~a~Dl~~~~~~~~~~~v~~~--~d---y~~-~~~ad 73 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLK--GEAMDLQHGSAFLKNPKIEAD--KD---YSV-TANSK 73 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHH--HHHHHHHHhhccCCCCEEEEC--CC---HHH-hCCCC
Confidence 358999996 9999999999998874 7888887653221 112222111 111122221 12 332 68899
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
+||-+||...-+ ..+-.+.+..|+.-.+.+.+..++++.+ .++.+|.
T Consensus 74 ivvitaG~~~k~--g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 74 VVIVTAGARQNE--GESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred EEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 999999874332 2334567889999999999999888744 5555553
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0054 Score=52.83 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=51.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHh-hccCC-CCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLK-ALEGA-DTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
.++++++|.|+ |+.+++++-.|+..|. +|+++.|+....++.+.+. .+... ...+.+ .++.+.+.+.+.+.++|
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~--~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV--TDLADQQAFAEALASAD 198 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE--echhhhhhhhhhcccCC
Confidence 35789999996 7779999999999996 8999999754223333332 22111 111222 22322233455567889
Q ss_pred EEEEcccCC
Q 020608 80 GVFHLASPC 88 (323)
Q Consensus 80 ~Vih~a~~~ 88 (323)
+|||+....
T Consensus 199 ivINaTp~G 207 (288)
T PRK12749 199 ILTNGTKVG 207 (288)
T ss_pred EEEECCCCC
Confidence 999987553
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0079 Score=50.96 Aligned_cols=107 Identities=15% Similarity=0.247 Sum_probs=64.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHH----------------HH-HHHhhccCCCCC--eEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDER----------------ET-AHLKALEGADTR--LRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~----------------~~-~~~~~~~~~~~~--~~~~~ 62 (323)
++..+|+|.|+ |.+|+++++.|+..| -++++++.+.-... +. ...+.+...++. ++.+.
T Consensus 28 L~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 28 FADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred hcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 45689999995 999999999999999 47777764321100 00 111222222333 33332
Q ss_pred ccCCCHhHHHHHhc-CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVT-GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~-~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+..+++...+++. ++|+||.+... +..-..+.+.|++.++ ++|.+..+
T Consensus 107 -~~i~~e~~~~ll~~~~D~VIdaiD~-----------------~~~k~~L~~~c~~~~i-p~I~~gGa 155 (268)
T PRK15116 107 -DFITPDNVAEYMSAGFSYVIDAIDS-----------------VRPKAALIAYCRRNKI-PLVTTGGA 155 (268)
T ss_pred -cccChhhHHHHhcCCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC-CEEEECCc
Confidence 2334556666664 68999988642 1223357778888874 66655544
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0039 Score=53.59 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=50.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++++++|+|+ |.+|++++..|+..| .+|+++.|+..+... ..+.+... ..+.+ ++ +..+.+.++|+|
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~--l~~~~~~~-~~~~~---~~----~~~~~~~~~Div 189 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEE--LAKLFGAL-GKAEL---DL----ELQEELADFDLI 189 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH--HHHHhhhc-cceee---cc----cchhccccCCEE
Confidence 46789999996 999999999999999 799999997533222 12222110 01111 11 223456788999
Q ss_pred EEcccCCc
Q 020608 82 FHLASPCI 89 (323)
Q Consensus 82 ih~a~~~~ 89 (323)
|++.....
T Consensus 190 InaTp~g~ 197 (278)
T PRK00258 190 INATSAGM 197 (278)
T ss_pred EECCcCCC
Confidence 99987543
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0022 Score=56.55 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=44.1
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEE---EEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVH---ATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
+|+|.||||++|+.|++.|.+++|.++ .+.+..+...... + .+......|+. ...++++|+||-
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~----~----~~~~~~~~~~~-----~~~~~~~D~v~~ 67 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT----F----KGKELEVNEAK-----IESFEGIDIALF 67 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee----e----CCeeEEEEeCC-----hHHhcCCCEEEE
Confidence 589999999999999999999887543 4445432221111 1 12344555553 123478999999
Q ss_pred cccC
Q 020608 84 LASP 87 (323)
Q Consensus 84 ~a~~ 87 (323)
+++.
T Consensus 68 a~g~ 71 (339)
T TIGR01296 68 SAGG 71 (339)
T ss_pred CCCH
Confidence 9864
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0077 Score=52.39 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=71.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
|||.|.|+ |++|+.++..|+..|+ +|+++++...... ....+.... .. .....+.++-..++++ +.++|+||-+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~d~~~~-~~-~~~~~~~i~~t~d~~~-~~~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKALDMYEA-SP-VGGFDTKVTGTNNYAD-TANSDIVVIT 76 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHHhhhhh-hh-ccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence 58999996 9999999999999886 8999988653222 121111110 00 0000111211112333 5789999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
++...- ...+-.+.+..|+.-...+++...+++.. .+|.+|.
T Consensus 77 ag~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 77 AGLPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 986322 12233457788999999999988776533 5666554
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.022 Score=43.61 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=64.5
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcH-----------------HHHHHHhhccCCC--CCeEEEEccCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDE-----------------RETAHLKALEGAD--TRLRLFQIDLL 66 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-----------------~~~~~~~~~~~~~--~~~~~~~~Dl~ 66 (323)
+|+|.|+ |.+|+++++.|+..|. ++++++.+.-.. ......+.+.... .+++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 5899996 9999999999999997 677775432110 1111111222222 34455666655
Q ss_pred CHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 67 ~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+.. ..+.+++.|+||.+... ......+.+.|++.+ ..++..++.
T Consensus 80 ~~~-~~~~~~~~diVi~~~d~-----------------~~~~~~l~~~~~~~~-i~~i~~~~~ 123 (143)
T cd01483 80 EDN-LDDFLDGVDLVIDAIDN-----------------IAVRRALNRACKELG-IPVIDAGGL 123 (143)
T ss_pred hhh-HHHHhcCCCEEEECCCC-----------------HHHHHHHHHHHHHcC-CCEEEEcCC
Confidence 433 36677899999988632 223445667788887 477777765
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0023 Score=55.36 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=50.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+++++|+|. |.+|+.++..|...|.+|++.+|++.. .+....+ +.+++ ..+++.+.+.++|+||
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~---~~~~~~~-----G~~~~-----~~~~l~~~l~~aDiVI 215 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAH---LARITEM-----GLSPF-----HLSELAEEVGKIDIIF 215 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHc-----CCeee-----cHHHHHHHhCCCCEEE
Confidence 35789999996 889999999999999999999887432 1222221 22322 2345677788999999
Q ss_pred Eccc
Q 020608 83 HLAS 86 (323)
Q Consensus 83 h~a~ 86 (323)
+++.
T Consensus 216 ~t~p 219 (296)
T PRK08306 216 NTIP 219 (296)
T ss_pred ECCC
Confidence 9863
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0086 Score=51.06 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=66.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHH-----------------HHHHhhccCCCC--CeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERE-----------------TAHLKALEGADT--RLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-----------------~~~~~~~~~~~~--~~~~~~ 62 (323)
++..+|+|.|+ |.+|++++..|+..|. ++.+++.+.-.... ....+.+...++ +++.+.
T Consensus 25 L~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 25 LRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred HhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 35679999995 9999999999999996 66666533211111 011122222233 445555
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..++ .+...++++++|+||.+.-. + ++..-..+.++|++.+ ..+|+.|..
T Consensus 104 ~~l~-~~n~~~ll~~~DlVvD~~D~---------~------~~~~r~~ln~~c~~~~-iP~V~~~~~ 153 (287)
T PRK08223 104 EGIG-KENADAFLDGVDVYVDGLDF---------F------EFDARRLVFAACQQRG-IPALTAAPL 153 (287)
T ss_pred cccC-ccCHHHHHhCCCEEEECCCC---------C------cHHHHHHHHHHHHHcC-CCEEEEecc
Confidence 5565 34567788899999866521 1 0122334666788887 477776554
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.014 Score=48.51 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHH-----------------HHHhhccCCCC--CeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERET-----------------AHLKALEGADT--RLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-----------------~~~~~~~~~~~--~~~~~~ 62 (323)
++..+|+|.| .|.+|+++++.|+..|. ++++++...-..... ...+.+...++ +++.+.
T Consensus 9 L~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 9 LRNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HhCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 4568999999 59999999999999996 677765432111110 11112222233 344455
Q ss_pred ccCCCHhHHHHHhc-CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVT-GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~-~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..++ .+....++. ++|+||.+... ...-..+.+.|++.++ ++|...+.
T Consensus 88 ~~i~-~~~~~~l~~~~~D~VvdaiD~-----------------~~~k~~L~~~c~~~~i-p~I~s~g~ 136 (231)
T cd00755 88 EFLT-PDNSEDLLGGDPDFVVDAIDS-----------------IRAKVALIAYCRKRKI-PVISSMGA 136 (231)
T ss_pred eecC-HhHHHHHhcCCCCEEEEcCCC-----------------HHHHHHHHHHHHHhCC-CEEEEeCC
Confidence 5554 344555554 68999988632 2233457778888774 66655444
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0033 Score=56.47 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=53.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
||+|+|.|| |.+|+.++..+.+.|++|++++.++..... . + --..+.+|..|.+.+.++.+.+|+|.
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~--~---~-----ad~~~~~~~~D~~~l~~~a~~~dvit 68 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAA--Q---V-----ADEVIVADYDDVAALRELAEQCDVIT 68 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchh--H---h-----CceEEecCCCCHHHHHHHHhcCCEEE
Confidence 579999997 899999999999999999999876533221 1 1 11356689999999999999999874
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.013 Score=49.07 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=69.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 81 (323)
+|++|+|.|||+ =|+.|++.|.+.|++|++-.-..... . .......+.|-+.+.+.+.++++ +++.|
T Consensus 1 ~~~~IlvlgGT~-egr~la~~L~~~g~~v~~Svat~~g~-----~-----~~~~~~v~~G~l~~~~~l~~~l~~~~i~~V 69 (248)
T PRK08057 1 MMPRILLLGGTS-EARALARALAAAGVDIVLSLAGRTGG-----P-----ADLPGPVRVGGFGGAEGLAAYLREEGIDLV 69 (248)
T ss_pred CCceEEEEechH-HHHHHHHHHHhCCCeEEEEEccCCCC-----c-----ccCCceEEECCCCCHHHHHHHHHHCCCCEE
Confidence 468899999986 59999999999999887765443221 0 02356778899889999999987 78999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCE
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 122 (323)
|+...+ +. ..-+.++.++|++.+++-
T Consensus 70 IDATHP---------fA------~~is~~a~~ac~~~~ipy 95 (248)
T PRK08057 70 IDATHP---------YA------AQISANAAAACRALGIPY 95 (248)
T ss_pred EECCCc---------cH------HHHHHHHHHHHHHhCCcE
Confidence 988754 22 234677889999988753
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0077 Score=54.84 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=32.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
.+|+|.|.| .|++|..++..|++.|++|+++++++.
T Consensus 2 ~~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 2 SFETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 468999998 699999999999999999999998653
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0033 Score=53.82 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=45.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+|+|.|++|.+|+.++..|+++|..|++..|.. .++.+.++++|+||
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t-----------------------------~~L~~~~~~aDIvI 207 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT-----------------------------QNLPELVKQADIIV 207 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-----------------------------hhHHHHhccCCEEE
Confidence 5789999999999999999999999999888875521 13455567889999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
++.|.
T Consensus 208 ~AtG~ 212 (283)
T PRK14192 208 GAVGK 212 (283)
T ss_pred EccCC
Confidence 99863
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0012 Score=52.67 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=46.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+++|.|.| .|-||+.+++.|..-|.+|++.+|....... .... .+ ...+++++++++|+|+
T Consensus 34 l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~---~~~~-----~~--------~~~~l~ell~~aDiv~ 96 (178)
T PF02826_consen 34 LRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEG---ADEF-----GV--------EYVSLDELLAQADIVS 96 (178)
T ss_dssp STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHH---HHHT-----TE--------EESSHHHHHHH-SEEE
T ss_pred cCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhh---cccc-----cc--------eeeehhhhcchhhhhh
Confidence 5789999999 5999999999999999999999987643220 1000 11 1124567788899988
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+...
T Consensus 97 ~~~pl 101 (178)
T PF02826_consen 97 LHLPL 101 (178)
T ss_dssp E-SSS
T ss_pred hhhcc
Confidence 87754
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0052 Score=54.35 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----CCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----GCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d 79 (323)
++++|||.||+|.+|+++++-+...|..+++..++.++. +..+.+.. + ...|..+.+-.+...+ ++|
T Consensus 157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~---~l~k~lGA---d---~vvdy~~~~~~e~~kk~~~~~~D 227 (347)
T KOG1198|consen 157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKL---ELVKKLGA---D---EVVDYKDENVVELIKKYTGKGVD 227 (347)
T ss_pred CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchH---HHHHHcCC---c---EeecCCCHHHHHHHHhhcCCCcc
Confidence 467999999999999999999988894444444443333 33333321 1 3466666555554444 589
Q ss_pred EEEEcccC
Q 020608 80 GVFHLASP 87 (323)
Q Consensus 80 ~Vih~a~~ 87 (323)
+|++|.+.
T Consensus 228 vVlD~vg~ 235 (347)
T KOG1198|consen 228 VVLDCVGG 235 (347)
T ss_pred EEEECCCC
Confidence 99999986
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0063 Score=49.47 Aligned_cols=36 Identities=31% Similarity=0.265 Sum_probs=32.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+++|+|+|+|. |-+|+++++.|.+.|++|++.++++
T Consensus 26 l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 26 LEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 57899999997 7999999999999999999887753
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.015 Score=52.43 Aligned_cols=106 Identities=18% Similarity=0.126 Sum_probs=65.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc-----------------HHHHHHHhhccCCCC--CeEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD-----------------ERETAHLKALEGADT--RLRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~ 63 (323)
+..+|+|.|+ |.+|++++..|+..|. ++++++.+.-. .......+.+...++ +++.+..
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 5678999995 9999999999999996 56666532211 011111122222233 3455566
Q ss_pred cCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
.++. +...++++++|+||.+... ...-..+.++|.+.+ ..+|+.++.
T Consensus 120 ~i~~-~~~~~~~~~~D~Vvd~~d~-----------------~~~r~~ln~~~~~~~-~p~v~~~~~ 166 (392)
T PRK07878 120 RLDP-SNAVELFSQYDLILDGTDN-----------------FATRYLVNDAAVLAG-KPYVWGSIY 166 (392)
T ss_pred cCCh-hHHHHHHhcCCEEEECCCC-----------------HHHHHHHHHHHHHcC-CCEEEEEec
Confidence 6654 4466788899999987621 112223556778777 467777665
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0036 Score=56.67 Aligned_cols=73 Identities=8% Similarity=0.100 Sum_probs=52.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+.+++|+|.|+ |.+|+.++..|.+.|. ++++..|+..+... ....+. . +.....+++.+.+.++|+|
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~--La~~~~----~-----~~~~~~~~l~~~l~~aDiV 246 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQK--ITSAFR----N-----ASAHYLSELPQLIKKADII 246 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHH--HHHHhc----C-----CeEecHHHHHHHhccCCEE
Confidence 46789999996 9999999999999995 79998887532221 111111 0 2233445677888999999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|++.+-
T Consensus 247 I~aT~a 252 (414)
T PRK13940 247 IAAVNV 252 (414)
T ss_pred EECcCC
Confidence 999875
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0061 Score=54.53 Aligned_cols=75 Identities=19% Similarity=0.092 Sum_probs=54.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
..++|+|+|+ |-+|...++.|...|.+|++++|++.+. +.+.... . ..+..+..+.+.+.+.+.++|+||+
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~---~~l~~~~----g-~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRL---RQLDAEF----G-GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHH---HHHHHhc----C-ceeEeccCCHHHHHHHHccCCEEEE
Confidence 4568999986 9999999999999999999998864221 2221110 1 1123455677888888999999999
Q ss_pred cccC
Q 020608 84 LASP 87 (323)
Q Consensus 84 ~a~~ 87 (323)
++..
T Consensus 237 a~~~ 240 (370)
T TIGR00518 237 AVLI 240 (370)
T ss_pred cccc
Confidence 8754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0045 Score=56.60 Aligned_cols=76 Identities=16% Similarity=0.063 Sum_probs=53.5
Q ss_pred CCCceEEEecc----------------ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC
Q 020608 3 KEAEVVCVTGG----------------SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66 (323)
Q Consensus 3 ~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (323)
+++|+||||+| ||-+|.+|++++..+|++|+++.-. ... . .+.+++.+. +.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp-~~~---------~-~p~~v~~i~--V~ 320 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP-VDL---------A-DPQGVKVIH--VE 320 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCC-cCC---------C-CCCCceEEE--ec
Confidence 67899999987 7999999999999999999988632 110 0 123455443 44
Q ss_pred CHhHHHHHhc---CCCEEEEcccCCccC
Q 020608 67 DYDAIAAAVT---GCTGVFHLASPCIVD 91 (323)
Q Consensus 67 ~~~~~~~~~~---~~d~Vih~a~~~~~~ 91 (323)
..+++.+++. ..|++|++|+...+.
T Consensus 321 ta~eM~~av~~~~~~Di~I~aAAVaDyr 348 (475)
T PRK13982 321 SARQMLAAVEAALPADIAIFAAAVADWR 348 (475)
T ss_pred CHHHHHHHHHhhCCCCEEEEecccccee
Confidence 4444444332 379999999987653
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0056 Score=53.56 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=33.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (323)
|+ .+++|.|.|+ |.+|+.++..|++.|++|++++++...
T Consensus 1 ~~-~~~~I~vIGa-G~mG~~iA~~l~~~g~~V~~~d~~~~~ 39 (311)
T PRK06130 1 MN-PIQNLAIIGA-GTMGSGIAALFARKGLQVVLIDVMEGA 39 (311)
T ss_pred CC-CccEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 54 4688999985 999999999999999999999886543
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0049 Score=57.45 Aligned_cols=82 Identities=21% Similarity=0.123 Sum_probs=49.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHH-h----hccCCCCCeEE-EEccCCCHhHHHHH
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHL-K----ALEGADTRLRL-FQIDLLDYDAIAAA 74 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~----~~~~~~~~~~~-~~~Dl~~~~~~~~~ 74 (323)
|++ .|+|.|+| +|.+|+.++..|+..|++|++.++++......... . .+... ..... ..+.++-.++++++
T Consensus 1 ~~~-i~kIavIG-~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~g~i~~~~~~~ea 77 (495)
T PRK07531 1 MTM-IMKAACIG-GGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAML-TDAPLPPEGRLTFCASLAEA 77 (495)
T ss_pred CCC-cCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhh-ccchhhhhhceEeeCCHHHH
Confidence 553 46899998 59999999999999999999999876443321110 0 00000 00000 01112222346677
Q ss_pred hcCCCEEEEcc
Q 020608 75 VTGCTGVFHLA 85 (323)
Q Consensus 75 ~~~~d~Vih~a 85 (323)
++++|+|+-+.
T Consensus 78 ~~~aD~Vieav 88 (495)
T PRK07531 78 VAGADWIQESV 88 (495)
T ss_pred hcCCCEEEEcC
Confidence 88999999776
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0014 Score=51.47 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=42.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||+|-++| .|-+|+.+++.|++.|++|++.+|++... +.+... +.+ .+ ++..++.+++|+|+-+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~---~~~~~~-----g~~--~~-----~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKA---EALAEA-----GAE--VA-----DSPAEAAEQADVVILC 64 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHH---HHHHHT-----TEE--EE-----SSHHHHHHHBSEEEE-
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhh---hhhHHh-----hhh--hh-----hhhhhHhhcccceEee
Confidence 68999999 59999999999999999999998864222 222211 211 12 2345566677988877
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
-
T Consensus 65 v 65 (163)
T PF03446_consen 65 V 65 (163)
T ss_dssp S
T ss_pred c
Confidence 5
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0051 Score=52.46 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=48.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++++|+|+|+|+++.+|+.++..|.++|..|++..+.. .++.+.++++|+|
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-----------------------------~~l~~~~~~ADIV 205 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-----------------------------KDMASYLKDADVI 205 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-----------------------------hhHHHHHhhCCEE
Confidence 36789999999999999999999999999999886521 2466778889999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|...+.
T Consensus 206 IsAvg~ 211 (286)
T PRK14175 206 VSAVGK 211 (286)
T ss_pred EECCCC
Confidence 999876
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.021 Score=51.03 Aligned_cols=170 Identities=13% Similarity=0.048 Sum_probs=94.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC-E----EEE--E--ecCCCcHHHHHHHhhccCC----CCCeEEEEccCCCHhHHH
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY-T----VHA--T--VKNLSDERETAHLKALEGA----DTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~-~----V~~--~--~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~ 72 (323)
-||.|+|++|.+|++++-.|+..|. . |.+ + +++.+... .....+.+. ..++.+..+ + .
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~--g~a~DL~d~a~~~~~~v~i~~~---~----y 115 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALE--GVAMELEDSLYPLLREVSIGID---P----Y 115 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhh--HHHHHHHHhhhhhcCceEEecC---C----H
Confidence 4899999999999999999998763 2 333 2 44433221 111122111 112221111 2 2
Q ss_pred HHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cC-EEEEecccccccCCCCCCCCccccCCCCC
Q 020608 73 AAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VK-RVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 73 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
+.++++|+||-+||...- ...+-.+.+..|+.-.+.+.....++. .. .+|.+|.-.-+... ...+.....
T Consensus 116 ~~~kdaDIVVitAG~prk--pg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~------v~~k~sg~~ 187 (387)
T TIGR01757 116 EVFEDADWALLIGAKPRG--PGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNAL------IAMKNAPNI 187 (387)
T ss_pred HHhCCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHH------HHHHHcCCC
Confidence 347789999999987432 233456788999999999999988843 33 56666643100000 000000000
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
+ +...=.-+.+..-++-...+++.+++...++-+.|+|.+..
T Consensus 188 -~-----~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd 229 (387)
T TIGR01757 188 -P-----RKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST 229 (387)
T ss_pred -c-----ccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC
Confidence 0 00111223333445555556666777777777788887643
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.016 Score=50.92 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=47.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC-HhHHHHHhcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD-YDAIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~d~Vi 82 (323)
.+.+++|+||+|.+|..+++.+...|.+|+++.+++.. .+.+..+ ... ..+ |..+ .+.+.+. .++|.|+
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~---~~~~~~~---~~~-~~~--~~~~~~~~~~~~-~~~d~v~ 231 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEK---LKILKEL---GAD-YVI--DGSKFSEDVKKL-GGADVVI 231 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHH---HHHHHHc---CCc-EEE--ecHHHHHHHHhc-cCCCEEE
Confidence 35789999999999999999999999999998875422 2222222 111 111 2221 1222222 2789999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
++++.
T Consensus 232 ~~~g~ 236 (332)
T cd08259 232 ELVGS 236 (332)
T ss_pred ECCCh
Confidence 99864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.011 Score=51.67 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=50.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++++|.|.| .|-||+.+++.|..-|++|++.+|..... .++..+ ...+++++++.++|+|+
T Consensus 134 l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~-------------~~~~~~----~~~~~l~e~l~~aDvvv 195 (312)
T PRK15469 134 REDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSW-------------PGVQSF----AGREELSAFLSQTRVLI 195 (312)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCC-------------CCceee----cccccHHHHHhcCCEEE
Confidence 5789999999 69999999999999999999998754221 011111 12446888899999999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+...
T Consensus 196 ~~lPl 200 (312)
T PRK15469 196 NLLPN 200 (312)
T ss_pred ECCCC
Confidence 88754
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0033 Score=57.53 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=45.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|.|+||+|.+|+.+++.|.+.|++|++.+|++.... +...+. ++. . ..+..+.+.++|+||-+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~--~~a~~~-----gv~-~------~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGK--EVAKEL-----GVE-Y------ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHH--HHHHHc-----CCe-e------ccCHHHHhccCCEEEEec
Confidence 48999999999999999999999999999998753211 111111 121 1 112344567789888776
Q ss_pred c
Q 020608 86 S 86 (323)
Q Consensus 86 ~ 86 (323)
.
T Consensus 67 p 67 (437)
T PRK08655 67 P 67 (437)
T ss_pred C
Confidence 4
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.027 Score=48.93 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=64.5
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc-----------------HHHHHHHhhccCC--CCCeEEEEccCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD-----------------ERETAHLKALEGA--DTRLRLFQIDLL 66 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-----------------~~~~~~~~~~~~~--~~~~~~~~~Dl~ 66 (323)
+|||.|+ |.+|+++++.|+..|. ++++++.+.-. .......+.+... ...++.+..++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 5899995 9999999999999996 67766533211 1111111222222 235666778887
Q ss_pred CHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 67 ~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+.+...+.+++.|+||.+.-. ...-..+-+.|+..++ .+|..++.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~Dn-----------------~~ar~~in~~c~~~~i-p~I~~gt~ 124 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALDN-----------------LAARRHVNKMCLAADV-PLIESGTT 124 (312)
T ss_pred CccchHHHHhcCCEEEECCCC-----------------HHHHHHHHHHHHHCCC-CEEEEecC
Confidence 654445678899999987521 2223345566777764 67776665
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=51.68 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=24.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY 30 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~ 30 (323)
..++|.|.||||++|..|++.|.+++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h 32 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF 32 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC
Confidence 457899999999999999999998877
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.012 Score=53.31 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=33.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+|+|||||+...+|..+++.|.+.|++|++++..+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 678999999999999999999999999999997764
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.006 Score=53.78 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=48.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|+|.|.| .|-||+.+++.|..-|.+|++.+|++.... .... ++. ..+++++++++|+|+
T Consensus 148 L~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~----~~~~-----~~~--------~~~l~ell~~aDiV~ 209 (333)
T PRK13243 148 VYGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKPEA----EKEL-----GAE--------YRPLEELLRESDFVS 209 (333)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCChhh----HHHc-----CCE--------ecCHHHHHhhCCEEE
Confidence 5789999999 599999999999999999999988653211 0000 111 124667788899998
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+...
T Consensus 210 l~lP~ 214 (333)
T PRK13243 210 LHVPL 214 (333)
T ss_pred EeCCC
Confidence 87754
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0034 Score=54.27 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=32.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (323)
..++|.|.|+ |.+|+.++..|++.|++|++.++++..
T Consensus 2 ~~~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~ 38 (287)
T PRK08293 2 DIKNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDEA 38 (287)
T ss_pred CccEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 3578999995 999999999999999999999987543
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.016 Score=48.17 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=28.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-CEEEEE-ecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-YTVHAT-VKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~-~r~~ 39 (323)
+|+||.|.|++|-+|+.+++.+.+.. .++.+. .|..
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~ 38 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPG 38 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCC
Confidence 36899999999999999999999875 565544 4443
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0021 Score=50.08 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=46.5
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
||.|.|| |-.|++++..|.++|++|.+..|++...+............++... ...+.=..+++++++++|+|+-+.
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l-~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKL-PENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBE-ETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCccc-CcccccccCHHHHhCcccEEEecc
Confidence 6899996 9999999999999999999998865222222221111111122111 112211235677889999988665
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.01 Score=48.34 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=47.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
.+++++|+|.|| |-+|...++.|++.|++|+++.+...+ ...+.... ..+.+..-++. ...+.++|.|
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~-~l~~l~~~-----~~i~~~~~~~~-----~~~l~~adlV 74 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTE-NLVKLVEE-----GKIRWKQKEFE-----PSDIVDAFLV 74 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCH-HHHHHHhC-----CCEEEEecCCC-----hhhcCCceEE
Confidence 467899999997 999999999999999999999764322 11111111 13444433332 2235678888
Q ss_pred EEcc
Q 020608 82 FHLA 85 (323)
Q Consensus 82 ih~a 85 (323)
|-+.
T Consensus 75 iaaT 78 (202)
T PRK06718 75 IAAT 78 (202)
T ss_pred EEcC
Confidence 7664
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0085 Score=51.25 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=47.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+++++|+|+ |.+|++++..|++.|++|++..|+..+.. +..+.+... ...... ++.+ ..+.++|+||+
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~--~la~~~~~~-~~~~~~--~~~~-----~~~~~~DivIn 184 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAE--ELAERFQRY-GEIQAF--SMDE-----LPLHRVDLIIN 184 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHhhc-CceEEe--chhh-----hcccCccEEEE
Confidence 4689999997 89999999999999999999988753322 222222111 112221 1111 12356899999
Q ss_pred cccCC
Q 020608 84 LASPC 88 (323)
Q Consensus 84 ~a~~~ 88 (323)
+.+..
T Consensus 185 atp~g 189 (270)
T TIGR00507 185 ATSAG 189 (270)
T ss_pred CCCCC
Confidence 99764
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.023 Score=46.56 Aligned_cols=105 Identities=17% Similarity=0.271 Sum_probs=66.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCC-------cHHH----------HHHHhhccCCCCCeEEEE-cc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLS-------DERE----------TAHLKALEGADTRLRLFQ-ID 64 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-------~~~~----------~~~~~~~~~~~~~~~~~~-~D 64 (323)
+..+|+|.|. |++|++.++.|++.|. ++++++-..- +... .-..+.+...+|..+.-. -|
T Consensus 29 ~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~ 107 (263)
T COG1179 29 KQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND 107 (263)
T ss_pred hhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh
Confidence 5678999995 9999999999999986 5666542210 0000 000111223345555433 44
Q ss_pred CCCHhHHHHHhc-CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 65 LLDYDAIAAAVT-GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 65 l~~~~~~~~~~~-~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
.-.++.+++++. +.|+||.+.- |+..-..|+..|++.+. -++||+
T Consensus 108 f~t~en~~~~~~~~~DyvIDaiD-----------------~v~~Kv~Li~~c~~~ki---~vIss~ 153 (263)
T COG1179 108 FITEENLEDLLSKGFDYVIDAID-----------------SVRAKVALIAYCRRNKI---PVISSM 153 (263)
T ss_pred hhCHhHHHHHhcCCCCEEEEchh-----------------hhHHHHHHHHHHHHcCC---CEEeec
Confidence 556777887776 5899998862 24555678889988864 456666
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0056 Score=57.47 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=32.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+++++++|+|+ |.+|++++..|++.|++|+++.|+.
T Consensus 377 ~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 377 LAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45789999998 8999999999999999999988864
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.036 Score=46.08 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=65.1
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHH----------------HH-HHHhhccCCC--CCeEEEEccCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDER----------------ET-AHLKALEGAD--TRLRLFQIDLL 66 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----------------~~-~~~~~~~~~~--~~~~~~~~Dl~ 66 (323)
+|||.| .|.+|+++++.|+..|. ++++++.+.-... +. ...+.+.... -+++.+..++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 589999 59999999999999996 6776654321111 10 1111122222 34566777775
Q ss_pred CHhH-HHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccC
Q 020608 67 DYDA-IAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITP 134 (323)
Q Consensus 67 ~~~~-~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~ 134 (323)
+.++ -.+.++++|+||.+... ...-..+.+.|.+.+ ..+|..++. +..+
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~Dn-----------------~~aR~~ln~~c~~~~-iplI~~g~~-G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDN-----------------IIARRYVNGMLIFLI-VPLIESGTE-GFKG 129 (234)
T ss_pred hhhhchHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcC-CCEEEEccc-CCce
Confidence 5433 24577899999987521 223344566677776 477776665 4443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.02 Score=55.30 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=68.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHH----------------HHHHHhhccCCC--CCeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDER----------------ETAHLKALEGAD--TRLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~----------------~~~~~~~~~~~~--~~~~~~~ 62 (323)
++.++|+|.|. | +|++++..|+..|. ++++++.+.-... .....+.+...+ .+++.+.
T Consensus 105 L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 105 LGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 35689999999 8 99999999999984 6777653221111 111111222222 3566677
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..++ .+.+.++++++|+|+.|.- + +..-..+.++|.+.++ .+|+-++.
T Consensus 183 ~~i~-~~n~~~~l~~~DlVvD~~D---------~--------~~~R~~ln~~a~~~~i-P~i~~~~~ 230 (722)
T PRK07877 183 DGLT-EDNVDAFLDGLDVVVEECD---------S--------LDVKVLLREAARARRI-PVLMATSD 230 (722)
T ss_pred ccCC-HHHHHHHhcCCCEEEECCC---------C--------HHHHHHHHHHHHHcCC-CEEEEcCC
Confidence 7776 6778999999999999872 1 1122235566888874 77776654
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0099 Score=50.73 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=54.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.++++.|+|+.| +|+--++...+=|++|++++++.. .+.++.+.+ +.+.+..-..|++.++++.+..|.++|
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~--kkeea~~~L-----GAd~fv~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSK--KKEEAIKSL-----GADVFVDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCch--hHHHHHHhc-----CcceeEEecCCHHHHHHHHHhhcCcce
Confidence 578999999988 998777766667999999988753 333455544 445444444588888888887777777
Q ss_pred ccc
Q 020608 84 LAS 86 (323)
Q Consensus 84 ~a~ 86 (323)
++.
T Consensus 253 ~v~ 255 (360)
T KOG0023|consen 253 TVS 255 (360)
T ss_pred eee
Confidence 764
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.005 Score=53.90 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=34.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
|+++.|+|+|.| +|-||+.++..|.+.|++|+++.|+.
T Consensus 1 ~~~~~m~I~IiG-~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIG-TGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEEC-CCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 777889999998 59999999999999999999999974
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.011 Score=50.80 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=48.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
++++|+|.|+ |..|++++..|++.|. +|++++|+..+.+.. .+.+....+...+.. . +++.+.+.++|+||
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~l--a~~l~~~~~~~~~~~--~---~~~~~~~~~aDiVI 197 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAAL--ADELNARFPAARATA--G---SDLAAALAAADGLV 197 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH--HHHHHhhCCCeEEEe--c---cchHhhhCCCCEEE
Confidence 5689999996 8899999999999997 799998875333222 222211111222221 1 23344567899999
Q ss_pred Eccc
Q 020608 83 HLAS 86 (323)
Q Consensus 83 h~a~ 86 (323)
++..
T Consensus 198 naTp 201 (284)
T PRK12549 198 HATP 201 (284)
T ss_pred ECCc
Confidence 9954
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.036 Score=49.41 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=48.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHH-HHHhcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAI-AAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~-~~~~~~~d~Vi 82 (323)
.+.+|+|+|+ |.+|...+..+...|.+|+++.|+..+....+.++++ +...+ |..+.+.. .....++|+||
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-----Ga~~v--~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-----GATYV--NSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-----CCEEe--cCCccchhhhhhcCCCCEEE
Confidence 4678999985 9999999988888899999998853233333444443 22322 22221110 11234689999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+.|.
T Consensus 244 d~~g~ 248 (355)
T cd08230 244 EATGV 248 (355)
T ss_pred ECcCC
Confidence 99863
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0043 Score=55.66 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=31.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
+++|.|.||+|.+|+.++..|.+.|++|++.+|+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 4789999999999999999999999999999774
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.06 Score=43.93 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=50.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++++|+|.|| |-+|..-++.|++.|.+|++++.... .+. ..+. . ..+++++..+.... .+++++.||
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~-~~l-~~l~---~-~~~i~~~~~~~~~~-----dl~~~~lVi 74 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE-SEL-TLLA---E-QGGITWLARCFDAD-----ILEGAFLVI 74 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC-HHH-HHHH---H-cCCEEEEeCCCCHH-----HhCCcEEEE
Confidence 57899999996 99999999999999999999865443 111 1221 1 12678888887632 256788887
Q ss_pred Ecc
Q 020608 83 HLA 85 (323)
Q Consensus 83 h~a 85 (323)
-+.
T Consensus 75 ~at 77 (205)
T TIGR01470 75 AAT 77 (205)
T ss_pred ECC
Confidence 554
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.015 Score=51.16 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=57.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHH-CCCE---EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLE-RRYT---VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~-~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
|+-+.++|.|.||||++|+.|++.|.+ ...+ +..+....+..... .+. +..+.+... +++ .++
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~----~~~--~~~l~v~~~---~~~----~~~ 67 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTV----QFK--GREIIIQEA---KIN----SFE 67 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCe----eeC--CcceEEEeC---CHH----Hhc
Confidence 666678999999999999999999995 5666 55554332111110 011 112222222 222 246
Q ss_pred CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccccc
Q 020608 77 GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISS 131 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~ 131 (323)
++|+||-+++.. .+..+...+.+.| ..+|=.||...
T Consensus 68 ~~Divf~a~~~~------------------~s~~~~~~~~~~G-~~VID~Ss~fR 103 (347)
T PRK06728 68 GVDIAFFSAGGE------------------VSRQFVNQAVSSG-AIVIDNTSEYR 103 (347)
T ss_pred CCCEEEECCChH------------------HHHHHHHHHHHCC-CEEEECchhhc
Confidence 799999887531 1334555555555 36666676643
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0012 Score=52.97 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=26.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
|+|.|.| .||+|..++..|++.|++|++++.++
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 6889997 79999999999999999999998754
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0054 Score=52.59 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=46.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+|.|.|.+|.+|+.++..|+++|+.|++..|... +++++.+++|+||
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~-----------------------------~l~e~~~~ADIVI 207 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST-----------------------------DAKALCRQADIVV 207 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC-----------------------------CHHHHHhcCCEEE
Confidence 57999999999999999999999999999998865421 3556667789888
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
-+.+.
T Consensus 208 savg~ 212 (301)
T PRK14194 208 AAVGR 212 (301)
T ss_pred EecCC
Confidence 88765
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.029 Score=49.28 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+.+|||+||+|.+|..+++.+...|.+|+++.++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 457899999999999999988888899999887754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.075 Score=46.18 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=71.4
Q ss_pred EEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHH-HHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 8 VCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERET-AHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
|.|.|+ |.+|+.++..|+..| .++++++++.+..... ..+..............+ .+ . +.++++|+||.+
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~---~-~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD---Y-ADAADADIVVIT 73 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC---H-HHhCCCCEEEEc
Confidence 468886 899999999999988 6899998876432221 111111111111222221 12 2 357899999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
|+...- ...+-...+..|+.-.+.+.+..++++.+ .++.+|.
T Consensus 74 ag~p~~--~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 74 AGAPRK--PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 986432 22344567788999999999999888744 4555553
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0047 Score=54.35 Aligned_cols=112 Identities=19% Similarity=0.018 Sum_probs=63.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhc--cCCCCCeE-EE-----EccCCCHhHHHHHhcC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL--EGADTRLR-LF-----QIDLLDYDAIAAAVTG 77 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~-~~-----~~Dl~~~~~~~~~~~~ 77 (323)
|||-|.| |||+|.-...-|++.||+|++++.++.+- +.+.+- +-..++++ ++ .+-++=..++++++++
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~KV---~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ 76 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDESKV---ELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD 76 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHHHH---HHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc
Confidence 6889999 79999999999999999999998764332 222211 10011110 00 1112222346677888
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
.|++|-+.|-...+ .-..++.....+++...+...+ ++|.+=|+
T Consensus 77 adv~fIavgTP~~~--------dg~aDl~~V~ava~~i~~~~~~~~vvV~KST 121 (414)
T COG1004 77 ADVVFIAVGTPPDE--------DGSADLSYVEAVAKDIGEILDGKAVVVIKST 121 (414)
T ss_pred CCEEEEEcCCCCCC--------CCCccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence 99999887642221 1112233444444444333322 67776666
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0049 Score=58.50 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=54.4
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 84 (323)
.+++|.|. |-+|++++++|.++|++|++++.+++. .+.+++ .+...+.||.+|++.++++ ++++|.|+-+
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~---~~~~~~-----~g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTR---VDELRE-----RGIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHH---HHHHHH-----CCCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 47899984 999999999999999999999875422 222222 2688999999999988765 4577877655
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 489 ~ 489 (558)
T PRK10669 489 I 489 (558)
T ss_pred c
Confidence 4
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0027 Score=56.42 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=30.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNL 39 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 39 (323)
|++++|+|+||||++|+.|++.|++... +++++.++.
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~ 38 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE 38 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence 3568999999999999999999997754 888875554
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0086 Score=52.00 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=45.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
+|+|.|.| .|.+|+.+++.|++.|++|++.+|++... +.+... +.. . .++..++++++|+||-+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~~~~~---~~~~~~-----g~~-----~--~~~~~e~~~~~d~vi~~ 65 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRNPEAV---AEVIAA-----GAE-----T--ASTAKAVAEQCDVIITM 65 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHH---HHHHHC-----CCe-----e--cCCHHHHHhcCCEEEEe
Confidence 46899998 69999999999999999999998765322 222111 111 1 12345566789999988
Q ss_pred cc
Q 020608 85 AS 86 (323)
Q Consensus 85 a~ 86 (323)
..
T Consensus 66 vp 67 (296)
T PRK11559 66 LP 67 (296)
T ss_pred CC
Confidence 63
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0073 Score=52.77 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=50.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+.+++|+|.|+ |-+|..+++.|...| .+|++++|++.+.. +...++ +. +..+.+++.+.+.++|+|
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~--~la~~~-----g~-----~~~~~~~~~~~l~~aDvV 242 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAE--ELAKEL-----GG-----NAVPLDELLELLNEADVV 242 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHH--HHHHHc-----CC-----eEEeHHHHHHHHhcCCEE
Confidence 35789999996 999999999999876 68888888653222 222222 11 222334567778889999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|.+.+.
T Consensus 243 i~at~~ 248 (311)
T cd05213 243 ISATGA 248 (311)
T ss_pred EECCCC
Confidence 999864
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.016 Score=55.50 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=55.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 84 (323)
++|+|.| .|-+|+.+++.|.++|+++++++.+++. .+.+++ .+...+.||.++++.++++ ++++|.||-+
T Consensus 401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~---v~~~~~-----~g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 401 PQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISA---VNLMRK-----YGYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHH---HHHHHh-----CCCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 5789998 5999999999999999999999876432 222222 2678899999999998875 5578888766
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 472 ~ 472 (601)
T PRK03659 472 C 472 (601)
T ss_pred e
Confidence 5
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0044 Score=54.55 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=30.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
||+|.|.|+ |-+|+.++..|++.|++|.+++|++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCH
Confidence 468999995 9999999999999999999998864
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.021 Score=49.71 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=68.2
Q ss_pred EEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHH--hhccC-CCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHL--KALEG-ADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~--~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
|.|+|+ |.+|+.++..|+..|. +|++++++++.... ..+ ..... ......+.. . +| ++ .++++|+||.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g-~~~dl~~~~~~~~~~~~I~~-t-~d---~~-~l~dADiVIi 72 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQG-KALDISQAAPILGSDTKVTG-T-ND---YE-DIAGSDVVVI 72 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHH-HHHHHHHhhhhcCCCeEEEE-c-CC---HH-HhCCCCEEEE
Confidence 468998 9999999999998876 99999988643221 111 11100 011112111 1 12 23 3689999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
+++....+ ...-.+.+..|+.-...+++...+.+.+ .+|++|.
T Consensus 73 t~g~p~~~--~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 73 TAGIPRKP--GMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred ecCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99864221 1223346667888888888888777644 4455553
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.017 Score=51.70 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=49.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|+|.|.| .|-||+.+++.|..-|.+|++.+|...+..... . .++.-..+++++++.+|+|+
T Consensus 190 L~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~---~------------~g~~~~~~l~ell~~aDvV~ 253 (385)
T PRK07574 190 LEGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ---E------------LGLTYHVSFDSLVSVCDVVT 253 (385)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh---h------------cCceecCCHHHHhhcCCEEE
Confidence 5789999999 599999999999999999999988652221100 0 11111234778889999998
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+...
T Consensus 254 l~lPl 258 (385)
T PRK07574 254 IHCPL 258 (385)
T ss_pred EcCCC
Confidence 87754
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0076 Score=55.06 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=50.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+.+++|+|.|+ |-+|..++..|...|. +|++..|++.... .....+ + ++..+.+++.+.+.++|+|
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~--~la~~~-----g-----~~~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAE--ELAEEF-----G-----GEAIPLDELPEALAEADIV 246 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHH--HHHHHc-----C-----CcEeeHHHHHHHhccCCEE
Confidence 46789999996 9999999999999997 7988888643221 112221 1 1223345667777899999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|.+.+.
T Consensus 247 I~aT~s 252 (423)
T PRK00045 247 ISSTGA 252 (423)
T ss_pred EECCCC
Confidence 999764
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.029 Score=50.57 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=64.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcH-----------------HHHHHHhhccCCC--CCeEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDE-----------------RETAHLKALEGAD--TRLRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-----------------~~~~~~~~~~~~~--~~~~~~~~ 63 (323)
+..+|+|.|+ |.+|++++..|+..|. ++++++.+.-.. ......+.+...+ .+++.+..
T Consensus 37 ~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 37 KAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 4678999995 9999999999999996 566654321110 0111112222223 34566666
Q ss_pred cCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
.++. +...+++.++|+||.+... +. .-..+.++|.+.+ ..+|+.+..
T Consensus 116 ~~~~-~~~~~~~~~~D~Vvd~~d~---------~~--------~r~~ln~~~~~~~-~p~v~~~~~ 162 (390)
T PRK07411 116 RLSS-ENALDILAPYDVVVDGTDN---------FP--------TRYLVNDACVLLN-KPNVYGSIF 162 (390)
T ss_pred ccCH-HhHHHHHhCCCEEEECCCC---------HH--------HHHHHHHHHHHcC-CCEEEEEEc
Confidence 6654 3456778899999988632 11 1222446677776 467766554
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=49.29 Aligned_cols=117 Identities=19% Similarity=0.114 Sum_probs=71.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
.+-||.|.||.|+||+.|...|-.+.. +....+-.... ....-+..+ +.+ ......+-.+.++++++++|+|
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~-GVaaDlSHI---~T~--s~V~g~~g~~~L~~al~~advV 100 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTP-GVAADLSHI---NTN--SSVVGFTGADGLENALKGADVV 100 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCC-ccccccccc---CCC--CceeccCChhHHHHHhcCCCEE
Confidence 356899999999999999877754321 22222222111 000000011 011 1123334456899999999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
+--||...-+...+ ++.|++|..-...+..++.+++.+ .+.++|-
T Consensus 101 vIPAGVPRKPGMTR--DDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 101 VIPAGVPRKPGMTR--DDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred EecCCCCCCCCCcH--HHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 99999753333222 458899999999999998887644 4555553
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0074 Score=54.99 Aligned_cols=72 Identities=11% Similarity=0.161 Sum_probs=50.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+.+++|+|.|+ |-+|..+++.|...| .+|++++|+..... .....+. ...+ +.+++.+++.++|+|
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~--~la~~~g-----~~~i-----~~~~l~~~l~~aDvV 244 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAE--DLAKELG-----GEAV-----KFEDLEEYLAEADIV 244 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHH--HHHHHcC-----CeEe-----eHHHHHHHHhhCCEE
Confidence 45789999996 999999999999999 78999988653221 1222221 1111 234667778899999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|.+.+.
T Consensus 245 i~aT~s 250 (417)
T TIGR01035 245 ISSTGA 250 (417)
T ss_pred EECCCC
Confidence 999754
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.043 Score=46.92 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=44.4
Q ss_pred CC-CCCceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC
Q 020608 1 MS-KEAEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG 77 (323)
Q Consensus 1 m~-~~~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (323)
|+ |++++|.|.| +|.||+.+++.|.+. ++++.++.... .....+..+++ +.. .-..+ +++++.+
T Consensus 1 ~~~m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~-~~~a~~~a~~~-----g~~---~~~~~---~eell~~ 67 (271)
T PRK13302 1 MSSRPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRD-PQRHADFIWGL-----RRP---PPVVP---LDQLATH 67 (271)
T ss_pred CCCCCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCC-HHHHHHHHHhc-----CCC---cccCC---HHHHhcC
Confidence 44 4557899999 599999999999873 78887554332 11111111111 000 00123 4455678
Q ss_pred CCEEEEcccC
Q 020608 78 CTGVFHLASP 87 (323)
Q Consensus 78 ~d~Vih~a~~ 87 (323)
+|+|+-++..
T Consensus 68 ~D~Vvi~tp~ 77 (271)
T PRK13302 68 ADIVVEAAPA 77 (271)
T ss_pred CCEEEECCCc
Confidence 9999999854
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.016 Score=53.50 Aligned_cols=78 Identities=22% Similarity=0.186 Sum_probs=54.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|++++|+|+|+|+ |.+|..+++.|+++|++|.+.+..+.... ...++.. ..++.++.+...+ ..+.+.|.
T Consensus 1 ~~~~~~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~~-~~~l~~~---~~gi~~~~g~~~~-----~~~~~~d~ 70 (445)
T PRK04308 1 MTFQNKKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPER-VAQIGKM---FDGLVFYTGRLKD-----ALDNGFDI 70 (445)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCchh-HHHHhhc---cCCcEEEeCCCCH-----HHHhCCCE
Confidence 7788899999997 68999999999999999999887654321 1222211 1256666655321 13357899
Q ss_pred EEEcccCC
Q 020608 81 VFHLASPC 88 (323)
Q Consensus 81 Vih~a~~~ 88 (323)
||...|..
T Consensus 71 vv~spgi~ 78 (445)
T PRK04308 71 LALSPGIS 78 (445)
T ss_pred EEECCCCC
Confidence 99988874
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0057 Score=52.70 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=32.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (323)
++++|.|.|+ |.+|..++..|+..|++|+++++++..
T Consensus 2 ~~~kI~VIG~-G~mG~~ia~~la~~g~~V~~~d~~~~~ 38 (282)
T PRK05808 2 GIQKIGVIGA-GTMGNGIAQVCAVAGYDVVMVDISDAA 38 (282)
T ss_pred CccEEEEEcc-CHHHHHHHHHHHHCCCceEEEeCCHHH
Confidence 4578999996 999999999999999999999887543
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.013 Score=51.21 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=51.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|++|.|+|| |.+|+=++.+-..-|++|++++-+++.+.. ++ --..+.++.+|.+.+.++.+++|+|
T Consensus 1 ~~tvgIlGG-GQLgrMm~~aa~~lG~~v~vLdp~~~~PA~-----~v-----a~~~i~~~~dD~~al~ela~~~DVi 66 (375)
T COG0026 1 MKTVGILGG-GQLGRMMALAAARLGIKVIVLDPDADAPAA-----QV-----ADRVIVAAYDDPEALRELAAKCDVI 66 (375)
T ss_pred CCeEEEEcC-cHHHHHHHHHHHhcCCEEEEecCCCCCchh-----hc-----ccceeecCCCCHHHHHHHHhhCCEE
Confidence 579999996 999999999999999999999755433222 11 1234677888999999999988877
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=52.83 Aligned_cols=71 Identities=21% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 81 (323)
+.|+|+|+|+ |.+|+.++..+.+.|++|++++.++...... .. -.++..|..|.+.+.++++ ++|.|
T Consensus 11 ~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~-~a---------d~~~~~~~~d~~~l~~~~~~~~id~v 79 (395)
T PRK09288 11 SATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQ-VA---------HRSHVIDMLDGDALRAVIEREKPDYI 79 (395)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchHH-hh---------hheEECCCCCHHHHHHHHHHhCCCEE
Confidence 3578999995 7999999999999999999998766432221 10 1246778889888888887 78988
Q ss_pred EEcc
Q 020608 82 FHLA 85 (323)
Q Consensus 82 ih~a 85 (323)
+-..
T Consensus 80 i~~~ 83 (395)
T PRK09288 80 VPEI 83 (395)
T ss_pred EEee
Confidence 8543
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.032 Score=49.37 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=31.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+.+|+|+||+|.+|..+++.+...|.+|+++.++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467999999999999999998888899999887754
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0061 Score=52.68 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=31.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (323)
++|.|.|+ |.+|+.++..|++.|++|++.++++..
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~ 36 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQ 36 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHH
Confidence 68999996 999999999999999999999987644
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.022 Score=50.41 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=28.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC-CEEEEEecC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKN 38 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~ 38 (323)
++|.|+|+||++|++|++.|.+.+ .++..+.++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~ 34 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS 34 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC
Confidence 489999999999999999998876 588877543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.048 Score=49.54 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=65.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHH-----------------HHHHHhhccCCCCC--eEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDER-----------------ETAHLKALEGADTR--LRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-----------------~~~~~~~~~~~~~~--~~~~~~ 63 (323)
+..+|+|.|+ |.+|+++++.|+..|. ++++++-..-... .....+.+...++. ++++..
T Consensus 19 ~~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e 97 (425)
T cd01493 19 ESAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEE 97 (425)
T ss_pred hhCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4578999986 5699999999999996 6777653321110 11111222222333 355555
Q ss_pred cCCCH-hHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccC
Q 020608 64 DLLDY-DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITP 134 (323)
Q Consensus 64 Dl~~~-~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~ 134 (323)
++++. +...+++.++|+||-+.. + ......+.+.|++.++ .+|+++|. +.++
T Consensus 98 ~~~~ll~~~~~f~~~fdiVI~t~~---------~--------~~~~~~L~~~c~~~~i-PlI~~~s~-G~~G 150 (425)
T cd01493 98 SPEALLDNDPSFFSQFTVVIATNL---------P--------ESTLLRLADVLWSANI-PLLYVRSY-GLYG 150 (425)
T ss_pred ccchhhhhHHHHhcCCCEEEECCC---------C--------HHHHHHHHHHHHHcCC-CEEEEecc-cCEE
Confidence 55442 223566788899885421 1 1122346677888874 88988888 4444
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.011 Score=45.89 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEe
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATV 36 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (323)
+++++|+|.|| |-+|...++.|++.|++|++++
T Consensus 11 l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc
Confidence 57899999996 9999999999999999999884
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=51.24 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (323)
..++|.|.|+ |.+|+.++..|+..|++|++.++++..
T Consensus 2 ~i~~I~ViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~ 38 (291)
T PRK06035 2 DIKVIGVVGS-GVMGQGIAQVFARTGYDVTIVDVSEEI 38 (291)
T ss_pred CCcEEEEECc-cHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 3578999995 999999999999999999999887543
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.007 Score=53.38 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=32.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
|+ .+|+|.|.| +|-+|+.++..|++.|++|++..|+++
T Consensus 1 ~~-~~m~I~iIG-~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 1 MH-HGMRVAVLG-AGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CC-CCCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 44 467899998 599999999999999999999998643
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.01 Score=50.97 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=45.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEe-cCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATV-KNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++|+|+|.|.+|.+|+.++..|+++|+.|++.. |+. +++++.+++|+|
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------------------------~l~e~~~~ADIV 205 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------------------------DLPAVCRRADIL 205 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------------------------CHHHHHhcCCEE
Confidence 5799999999999999999999999999999873 431 135566778888
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|-+.+.
T Consensus 206 Isavg~ 211 (296)
T PRK14188 206 VAAVGR 211 (296)
T ss_pred EEecCC
Confidence 888765
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.05 Score=46.61 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=63.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcH-----------------HHHHHHhhccCCCC--CeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDE-----------------RETAHLKALEGADT--RLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-----------------~~~~~~~~~~~~~~--~~~~~~ 62 (323)
++..+|||.|. |.+|.++++.|+..|. ++++++...-.. ......+.+...++ +++.+.
T Consensus 17 L~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~ 95 (286)
T cd01491 17 LQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST 95 (286)
T ss_pred HhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 34578999995 9999999999999996 576665332111 11111122333233 344454
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccC
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITP 134 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~ 134 (323)
.++ + .+.+.++|+||.+.. ++ ..-..+-++|++.++ .||...+. ++++
T Consensus 96 ~~~-~----~~~l~~fdvVV~~~~---------~~--------~~~~~in~~c~~~~i-pfI~a~~~-G~~G 143 (286)
T cd01491 96 GPL-T----TDELLKFQVVVLTDA---------SL--------EDQLKINEFCHSPGI-KFISADTR-GLFG 143 (286)
T ss_pred ccC-C----HHHHhcCCEEEEecC---------CH--------HHHHHHHHHHHHcCC-EEEEEecc-ccEE
Confidence 443 2 245678898887752 12 223345577888774 88887776 4443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.035 Score=49.20 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=64.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecC----------C---CcH------HHHHHH-hhccCCCCCeEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKN----------L---SDE------RETAHL-KALEGADTRLRLF 61 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~----------~---~~~------~~~~~~-~~~~~~~~~~~~~ 61 (323)
++.++|+|.|+ |++|++++..|++.|. ++++++.. . ... .+.+.+ +.+...+.++..+
T Consensus 174 L~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~ 252 (393)
T PRK06153 174 LEGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPH 252 (393)
T ss_pred HhhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEE
Confidence 35679999994 9999999999999996 67776422 1 000 111111 1122234466666
Q ss_pred EccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 62 QIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 62 ~~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
...+ +.+.+. .+.++|+||-|.-. ..+-..+.++|.+.++ .+|.++-
T Consensus 253 ~~~I-~~~n~~-~L~~~DiV~dcvDn-----------------~~aR~~ln~~a~~~gI-P~Id~G~ 299 (393)
T PRK06153 253 PEYI-DEDNVD-ELDGFTFVFVCVDK-----------------GSSRKLIVDYLEALGI-PFIDVGM 299 (393)
T ss_pred eecC-CHHHHH-HhcCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC-CEEEeee
Confidence 6666 555554 57899999999732 2233345566777764 5665544
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.031 Score=48.51 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=27.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEec
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVK 37 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r 37 (323)
++.+|.|.||||++|..|++.|.+..+ ++..+..
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s 35 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPE 35 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEec
Confidence 357999999999999999999988764 6666543
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0053 Score=54.48 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=30.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
+||+|.|.| +|.+|+.++..|++.|++|++++|+
T Consensus 1 ~~mkI~IiG-~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 1 MMARICVLG-AGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCceEEEEC-CCHHHHHHHHHHHhcCCcEEEEecH
Confidence 357899998 5999999999999999999999885
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.012 Score=51.50 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=31.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+.|+|.|.| +|-+|+.++..|++.|++|++.+|+.
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 567899998 59999999999999999999998864
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.049 Score=50.32 Aligned_cols=125 Identities=20% Similarity=0.144 Sum_probs=71.9
Q ss_pred ceEE----EeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVC----VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vl----ItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
..+| |+||+|.+|.++++.|...|.+|++..+...... .....++.-+..|.+..+..+++
T Consensus 35 ~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~~~~~~l------- 99 (450)
T PRK08261 35 QPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWA--------AGWGDRFGALVFDATGITDPADL------- 99 (450)
T ss_pred CCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccc--------cCcCCcccEEEEECCCCCCHHHH-------
Confidence 4556 8899999999999999999999998755432000 00011222223333322211111
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
... .......+..... ..+||+++|....... ..
T Consensus 100 ----------------~~~----~~~~~~~l~~l~~--~griv~i~s~~~~~~~------------------------~~ 133 (450)
T PRK08261 100 ----------------KAL----YEFFHPVLRSLAP--CGRVVVLGRPPEAAAD------------------------PA 133 (450)
T ss_pred ----------------HHH----HHHHHHHHHhccC--CCEEEEEccccccCCc------------------------hH
Confidence 001 1111222222222 3599999987332111 12
Q ss_pred hHHHHHHHHHHHHHHHHhC--CccEEEEcCCC
Q 020608 162 YPLSKTLAEKAAWEFAKEK--GLDVVVVNPGT 191 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~ 191 (323)
|+.+|...+.+++.++.+. ++.+..+.|+.
T Consensus 134 ~~~akaal~gl~rsla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 134 AAAAQRALEGFTRSLGKELRRGATAQLVYVAP 165 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEEEecCC
Confidence 8999999999999888774 67787787653
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.025 Score=49.67 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=28.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC---CEEEEEec
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR---YTVHATVK 37 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~r 37 (323)
+.++|.|.||||++|..|++.|.++. .++..+..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS 39 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS 39 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc
Confidence 56799999999999999999999854 36666643
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.016 Score=52.89 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=30.4
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
|+|.|.| .|++|..++..|++.|++|++.++++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 4789998 699999999999999999999988653
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.016 Score=49.78 Aligned_cols=77 Identities=10% Similarity=-0.074 Sum_probs=49.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++++++|.|+ |..|+.++..|++.|. +|+++.|+..+.+. ..+.+... ..+. .+...+++...+.++|+|
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~--La~~~~~~-~~~~----~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSR--LVDLGVQV-GVIT----RLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH--HHHHhhhc-Ccce----eccchhhhhhcccCCCEE
Confidence 35789999995 9999999999999996 79999887533322 12222110 1111 122223344556789999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
||+...
T Consensus 195 InaTp~ 200 (282)
T TIGR01809 195 VSTVPA 200 (282)
T ss_pred EECCCC
Confidence 999865
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.12 Score=44.78 Aligned_cols=163 Identities=14% Similarity=0.097 Sum_probs=91.5
Q ss_pred EeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccC----CCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 10 VTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEG----ADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 10 ItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
|.|+ |.||+.++..|+..+. ++.+++++.+.... ..+ .+.+ ......+.. .+. +.++++|+||-
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g-~a~-Dl~~~~~~~~~~~~i~~---~~~----~~~~daDivVi 70 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEG-EAM-DLQHAASFLPTPKKIRS---GDY----SDCKDADLVVI 70 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhH-HHH-HHHHhhcccCCCeEEec---CCH----HHHCCCCEEEE
Confidence 4564 9999999999998874 78888886532221 111 1111 112233322 222 35778999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
+||...-+ ..+-.+.++.|+.-.+.+.+...+++.+ .++.+|.-.-.... ...... ...+. ...
T Consensus 71 tag~~rk~--g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~------~~~~~s-g~p~~------~vi 135 (299)
T TIGR01771 71 TAGAPQKP--GETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTY------VAWKLS-GFPKN------RVI 135 (299)
T ss_pred CCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH------HHHHHh-CCCHH------HEE
Confidence 99974332 2234578899999999999998887644 55555543111000 000000 00000 112
Q ss_pred HH-HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 163 PL-SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 163 ~~-sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
|. +.+..-++-...++..+++..-++. .|+|.+..
T Consensus 136 G~gt~LDs~R~~~~la~~l~v~~~~V~~-~v~GeHG~ 171 (299)
T TIGR01771 136 GSGTVLDTARLRYLLAEKLGVDPQSVHA-YIIGEHGD 171 (299)
T ss_pred eccchHHHHHHHHHHHHHhCcCcCeEEE-EEEecCCC
Confidence 33 2222344444455566787777775 48887643
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.011 Score=40.18 Aligned_cols=32 Identities=34% Similarity=0.322 Sum_probs=29.4
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+|+|.|| |++|..++..|.+.|.+|+++.|++
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccc
Confidence 5888996 9999999999999999999998875
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.023 Score=44.14 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=42.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+|+|.|.++.+|+.|+..|.++|..|+...... .++++..+++|+||
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-----------------------------~~l~~~~~~ADIVV 84 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-----------------------------KNLQEITRRADIVV 84 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-----------------------------SSHHHHHTTSSEEE
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-----------------------------CcccceeeeccEEe
Confidence 6789999999999999999999999999988763321 23566678889999
Q ss_pred EcccCC
Q 020608 83 HLASPC 88 (323)
Q Consensus 83 h~a~~~ 88 (323)
-.+|..
T Consensus 85 sa~G~~ 90 (160)
T PF02882_consen 85 SAVGKP 90 (160)
T ss_dssp E-SSST
T ss_pred eeeccc
Confidence 888763
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.02 Score=49.65 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=47.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|+|.|.| .|-||+.+++.|..-|.+|++.+|+.... ++... ..+++++++++|+|+
T Consensus 120 L~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------~~~~~------~~~l~ell~~aDiv~ 178 (303)
T PRK06436 120 LYNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRSYVND--------------GISSI------YMEPEDIMKKSDFVL 178 (303)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCccc--------------Ccccc------cCCHHHHHhhCCEEE
Confidence 5789999999 69999999998887899999998763210 11100 124677888999998
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+...
T Consensus 179 ~~lp~ 183 (303)
T PRK06436 179 ISLPL 183 (303)
T ss_pred ECCCC
Confidence 88754
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.015 Score=52.10 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=55.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++.++|||.|+ |=+|.-++.+|++.| .+|++..|+..+.. +...++ .++....+++...+..+|+|
T Consensus 176 L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~--~La~~~----------~~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 176 LKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAE--ELAKKL----------GAEAVALEELLEALAEADVV 242 (414)
T ss_pred cccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHH--HHHHHh----------CCeeecHHHHHHhhhhCCEE
Confidence 56889999996 999999999999999 58998888653322 222222 26666777888899999999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|-+.+-
T Consensus 243 issTsa 248 (414)
T COG0373 243 ISSTSA 248 (414)
T ss_pred EEecCC
Confidence 988764
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.031 Score=53.69 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=55.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih 83 (323)
.++|+|.|. |-+|+.+++.|.++|+++++++.+++.. +.+++ .+...+.||.++++.++++ +++++.||-
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v---~~~~~-----~g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHI---ETLRK-----FGMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHH---HHHHh-----cCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 368999995 9999999999999999999998765322 22222 2678899999999988764 457788876
Q ss_pred cc
Q 020608 84 LA 85 (323)
Q Consensus 84 ~a 85 (323)
+.
T Consensus 471 ~~ 472 (621)
T PRK03562 471 AI 472 (621)
T ss_pred Ee
Confidence 64
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.064 Score=47.10 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=48.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHH---Hhc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAA---AVT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~---~~~--~~ 78 (323)
.+.+++|+|+++.+|..+++.+...|.+|+++.++.... +.+... +.. ...|..+.+..+. ... ++
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~---~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKL---ERAKEL---GAD---YVIDYRKEDFVREVRELTGKRGV 236 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH---HHHHHc---CCC---eEEecCChHHHHHHHHHhCCCCC
Confidence 457899999999999999999999999999887754221 222222 111 1224444333332 222 58
Q ss_pred CEEEEccc
Q 020608 79 TGVFHLAS 86 (323)
Q Consensus 79 d~Vih~a~ 86 (323)
|.++++++
T Consensus 237 d~~i~~~g 244 (342)
T cd08266 237 DVVVEHVG 244 (342)
T ss_pred cEEEECCc
Confidence 99999986
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.031 Score=49.20 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=47.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+|.|.| .|-||+.+++.|...|++|++.+|++.... .. +.-.++++++++++|+|+
T Consensus 144 l~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~-------------~~------~~~~~~l~ell~~aDiVi 203 (330)
T PRK12480 144 VKNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNKDL-------------DF------LTYKDSVKEAIKDADIIS 203 (330)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhHhh-------------hh------hhccCCHHHHHhcCCEEE
Confidence 5788999999 599999999999999999999988642110 00 001124677888999888
Q ss_pred Eccc
Q 020608 83 HLAS 86 (323)
Q Consensus 83 h~a~ 86 (323)
-+..
T Consensus 204 l~lP 207 (330)
T PRK12480 204 LHVP 207 (330)
T ss_pred EeCC
Confidence 7764
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.035 Score=49.77 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=48.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|+|.|.| .|-||+.+++.|..-|.+|++.+|....... .... ++. -.+++++++..+|+|+
T Consensus 197 L~gktVGIVG-~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~---~~~~-----g~~-------~~~~l~ell~~sDvV~ 260 (386)
T PLN03139 197 LEGKTVGTVG-AGRIGRLLLQRLKPFNCNLLYHDRLKMDPEL---EKET-----GAK-------FEEDLDAMLPKCDVVV 260 (386)
T ss_pred CCCCEEEEEe-ecHHHHHHHHHHHHCCCEEEEECCCCcchhh---Hhhc-----Cce-------ecCCHHHHHhhCCEEE
Confidence 6789999999 6999999999999999999998876422211 0000 111 1234777888899998
Q ss_pred Eccc
Q 020608 83 HLAS 86 (323)
Q Consensus 83 h~a~ 86 (323)
.+..
T Consensus 261 l~lP 264 (386)
T PLN03139 261 INTP 264 (386)
T ss_pred EeCC
Confidence 7764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.027 Score=49.11 Aligned_cols=72 Identities=19% Similarity=0.133 Sum_probs=50.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
+++|+|+|. |.+|...++.+...|.+|++++|++++.+. ++++ +...+...- |.+..+.+-+.+|++|.+
T Consensus 167 G~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~---a~~l-----GAd~~i~~~-~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 167 GKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLEL---AKKL-----GADHVINSS-DSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHH---HHHh-----CCcEEEEcC-CchhhHHhHhhCcEEEEC
Confidence 689999997 599999999888899999999997644333 3333 222222222 555556555558999999
Q ss_pred cc
Q 020608 85 AS 86 (323)
Q Consensus 85 a~ 86 (323)
++
T Consensus 237 v~ 238 (339)
T COG1064 237 VG 238 (339)
T ss_pred CC
Confidence 85
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.087 Score=44.28 Aligned_cols=93 Identities=24% Similarity=0.250 Sum_probs=66.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
|+|||.|||+ =|+.|+..|.++|+ |++-.-..-.... ..........+.|-+.+.+.+.++++ +++.||+
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~t~~g~~~------~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vID 72 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVATSYGGEL------LKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVID 72 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC-EEEEEEhhhhHhh------hccccCCceEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 7999999986 59999999999998 5544332211111 00112356778899889999999986 7999998
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK 121 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 121 (323)
...+ +. ..-+.|+.++|++.++.
T Consensus 73 ATHP---------fA------~~is~na~~a~~~~~ip 95 (249)
T PF02571_consen 73 ATHP---------FA------AEISQNAIEACRELGIP 95 (249)
T ss_pred CCCc---------hH------HHHHHHHHHHHhhcCcc
Confidence 8754 23 23477789999998874
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.014 Score=54.08 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=31.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+++++++|+|+ |.+|++++..|++.|++|++..|+.
T Consensus 330 ~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~ 365 (477)
T PRK09310 330 LNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTK 365 (477)
T ss_pred cCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45789999995 8999999999999999999888764
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.014 Score=54.41 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=51.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+.+++|+|.|+ |-+|..+++.|...|. +|+++.|+....... ...+. +... .+...+++.+++.++|+|
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~L--a~~~~----g~~i---~~~~~~dl~~al~~aDVV 333 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL--REEFP----DVEI---IYKPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH--HHHhC----CCce---EeecHhhHHHHHhcCCEE
Confidence 45789999997 9999999999999996 799998875332221 11111 1111 122334566778899999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|.+.+.
T Consensus 334 IsAT~s 339 (519)
T PLN00203 334 FTSTSS 339 (519)
T ss_pred EEccCC
Confidence 988653
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.011 Score=50.99 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=51.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEE-----EccCCCHhHHHHHhcCCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLF-----QIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~~~~~~~~~~~~~d 79 (323)
+++|.|.|+ |-=|++|+..|+++||+|+.-.|++.-... +.....+..++ ..++.-..++.++++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~------i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAE------INETRENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHH------HHhcCcCccccCCccCCcccccccCHHHHHhcCC
Confidence 479999996 888999999999999999999997532222 21111122333 233434456888888999
Q ss_pred EEEEcc
Q 020608 80 GVFHLA 85 (323)
Q Consensus 80 ~Vih~a 85 (323)
+|+-..
T Consensus 74 ~iv~av 79 (329)
T COG0240 74 IIVIAV 79 (329)
T ss_pred EEEEEC
Confidence 887554
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.011 Score=51.07 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=28.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-CEEEEEe
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATV 36 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (323)
+|+||.|.||+|+.|..|++.|+... .++....
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~s 34 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILIS 34 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEee
Confidence 46899999999999999999999875 4766554
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.024 Score=45.17 Aligned_cols=78 Identities=13% Similarity=0.020 Sum_probs=51.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC-HhHHHHHhcCCCE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD-YDAIAAAVTGCTG 80 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~d~ 80 (323)
.+++|+|+|.|.+.-+|+.|+..|+++|..|++.+.+...... ......--.....| ...+.+..+++|+
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~---------~~~~~~hs~t~~~~~~~~l~~~~~~ADI 129 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT---------RGESIRHEKHHVTDEEAMTLDCLSQSDV 129 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc---------cccccccccccccchhhHHHHHhhhCCE
Confidence 3679999999999999999999999999999987543211000 00000000111112 2236778889999
Q ss_pred EEEcccCC
Q 020608 81 VFHLASPC 88 (323)
Q Consensus 81 Vih~a~~~ 88 (323)
||-..|..
T Consensus 130 VIsAvG~~ 137 (197)
T cd01079 130 VITGVPSP 137 (197)
T ss_pred EEEccCCC
Confidence 99998864
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.016 Score=50.23 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (323)
+.++|.|.|+ |.+|..++..|+.+|++|++.+|++..
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~ 39 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGYDVLLNDVSADR 39 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 4578999995 999999999999999999999987543
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.025 Score=51.27 Aligned_cols=67 Identities=16% Similarity=0.040 Sum_probs=47.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+++|+|+|. |.||+.++..|...|.+|++..+++.... +... .+++. .+ ++++++++|+||
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~--~A~~------~G~~v-----~~---l~eal~~aDVVI 272 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICAL--QAAM------DGFRV-----MT---MEEAAELGDIFV 272 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhH--HHHh------cCCEe-----cC---HHHHHhCCCEEE
Confidence 46899999995 99999999999999999999987653321 1110 12221 12 345677899999
Q ss_pred Eccc
Q 020608 83 HLAS 86 (323)
Q Consensus 83 h~a~ 86 (323)
.+.+
T Consensus 273 ~aTG 276 (425)
T PRK05476 273 TATG 276 (425)
T ss_pred ECCC
Confidence 8764
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.071 Score=52.93 Aligned_cols=109 Identities=12% Similarity=0.107 Sum_probs=65.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc-----------------HHHHHHHhhccCCCC--CeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD-----------------ERETAHLKALEGADT--RLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~ 62 (323)
++..+|+|.| .|++|+.++..|+..|. ++++++.+.-. .......+.+...++ +++.+.
T Consensus 330 L~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~ 408 (989)
T PRK14852 330 LLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP 408 (989)
T ss_pred HhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence 3567999999 59999999999999986 55555322100 011111122222233 455555
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
..+ +.+.+.++++++|+||.+.-. +. +..-..+.+.|.+.++ .+|+.++.
T Consensus 409 ~~I-~~en~~~fl~~~DiVVDa~D~---------~~------~~~rr~l~~~c~~~~I-P~I~ag~~ 458 (989)
T PRK14852 409 EGV-AAETIDAFLKDVDLLVDGIDF---------FA------LDIRRRLFNRALELGI-PVITAGPL 458 (989)
T ss_pred cCC-CHHHHHHHhhCCCEEEECCCC---------cc------HHHHHHHHHHHHHcCC-CEEEeecc
Confidence 566 456688889999999977621 10 1122345566777774 67776664
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.069 Score=41.38 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=44.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|+++|+| -|.+|+.+++.|...|.+|++..++| ....++.. .+++.. .+++++...|++|
T Consensus 21 l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DP--i~alqA~~------dGf~v~--------~~~~a~~~adi~v 83 (162)
T PF00670_consen 21 LAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDP--IRALQAAM------DGFEVM--------TLEEALRDADIFV 83 (162)
T ss_dssp -TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSH--HHHHHHHH------TT-EEE---------HHHHTTT-SEEE
T ss_pred eCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECCh--HHHHHhhh------cCcEec--------CHHHHHhhCCEEE
Confidence 4689999999 59999999999999999999997754 22222221 244432 2566788899999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+.|.
T Consensus 84 taTG~ 88 (162)
T PF00670_consen 84 TATGN 88 (162)
T ss_dssp E-SSS
T ss_pred ECCCC
Confidence 88775
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.088 Score=50.83 Aligned_cols=107 Identities=13% Similarity=0.141 Sum_probs=64.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcH----------------HHHH-HHhhccCCC--CCeEEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDE----------------RETA-HLKALEGAD--TRLRLFQ 62 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----------------~~~~-~~~~~~~~~--~~~~~~~ 62 (323)
++..+|+|.| .|.+|++++..|+..|. ++++++.+.-.. .+.+ ..+.+...+ .+++.+.
T Consensus 41 L~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 41 LAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP 119 (679)
T ss_pred HhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3568999999 59999999999999986 555554211000 0111 111222222 3566777
Q ss_pred ccCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEec
Q 020608 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127 (323)
Q Consensus 63 ~Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 127 (323)
..++ .+.+.++++++|+||.+.-. +. +..-..+.+.|++.++ .+|+.+
T Consensus 120 ~~i~-~~n~~~~l~~~DvVid~~D~---------~~------~~~r~~l~~~c~~~~i-P~i~~g 167 (679)
T PRK14851 120 AGIN-ADNMDAFLDGVDVVLDGLDF---------FQ------FEIRRTLFNMAREKGI-PVITAG 167 (679)
T ss_pred cCCC-hHHHHHHHhCCCEEEECCCC---------Cc------HHHHHHHHHHHHHCCC-CEEEee
Confidence 7775 45678889999999977621 00 1112235567877775 566554
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.068 Score=45.20 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+.+|+|+|+++ +|..+++.+...|.+|+++.+++
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCH
Confidence 467899999999 99999999999999999987764
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.037 Score=49.06 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=53.0
Q ss_pred CceEEEeccccHHHHHHHHHHHH-CCCE---EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLE-RRYT---VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~-~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|++|.|.||||++|+.|++.|++ +... ++.+....+.. ....+. + -.....++.+.+. ++++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~----~~~~f~--g--~~~~v~~~~~~~~----~~~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGG----AAPSFG--G--KEGTLQDAFDIDA----LKKLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCC----cccccC--C--CcceEEecCChhH----hcCCCE
Confidence 47999999999999999995555 4555 66554321111 000111 1 1112233333332 467999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
||-+++.. -+..+...+.+.|.+ .+|=.||.
T Consensus 69 vf~a~~~~------------------~s~~~~~~~~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 69 IITCQGGD------------------YTNEVYPKLRAAGWQGYWIDAAST 100 (369)
T ss_pred EEECCCHH------------------HHHHHHHHHHhCCCCeEEEECChH
Confidence 99888531 234455556666653 35555554
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.12 Score=44.03 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=26.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHC-CCEEEEEec
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVK 37 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r 37 (323)
|+||.|.|. |.||+.+++.|.+. +.++.++..
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~ 33 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIV 33 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEE
Confidence 479999997 99999999999876 567766653
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.029 Score=49.78 Aligned_cols=80 Identities=18% Similarity=0.065 Sum_probs=51.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|++.|.| .|-||+.+++.|..-|.+|++.+|+...... ... .++. ....-+........++++++.++|+|+
T Consensus 157 l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~-~~~-~~~~--~~~~~~~~~~~~~~~L~ell~~aDiVv 231 (347)
T PLN02928 157 LFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPE-DGL-LIPN--GDVDDLVDEKGGHEDIYEFAGEADIVV 231 (347)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhh-hhh-cccc--ccccccccccCcccCHHHHHhhCCEEE
Confidence 5789999999 5999999999999999999999886422111 000 0000 000000001113456888999999999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+...
T Consensus 232 l~lPl 236 (347)
T PLN02928 232 LCCTL 236 (347)
T ss_pred ECCCC
Confidence 88754
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.028 Score=50.69 Aligned_cols=68 Identities=19% Similarity=0.126 Sum_probs=52.2
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEEc
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFHL 84 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih~ 84 (323)
||+|.|+ |..|..+++.+.+.|++|++++.++..... .. --+.+..|..|.+.+.++++ ++|.|+-.
T Consensus 1 kililG~-g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~-~~---------ad~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 1 RVLLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAM-QV---------AHRSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchh-hh---------CceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 6899995 999999999999999999999887643221 11 11345678889998888877 79998865
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 70 ~ 70 (380)
T TIGR01142 70 I 70 (380)
T ss_pred c
Confidence 4
|
This enzyme is an alternative to PurN (TIGR00639) |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.097 Score=42.95 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=69.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHH--------hhc-c-CCCCCeEEEE---ccCCCH--hH
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHL--------KAL-E-GADTRLRLFQ---IDLLDY--DA 70 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~--------~~~-~-~~~~~~~~~~---~Dl~~~--~~ 70 (323)
|++.++| -|-+|.+++++|+..||+|+++++++...+..... +.+ . -..++..++- +|+++. ++
T Consensus 1 M~iGmiG-LGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~ 79 (300)
T COG1023 1 MQIGMIG-LGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDD 79 (300)
T ss_pred Ccceeec-cchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHH
Confidence 4567777 69999999999999999999999976432221111 001 0 1124444432 677763 56
Q ss_pred HHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccC
Q 020608 71 IAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITP 134 (323)
Q Consensus 71 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~ 134 (323)
+...++.=|+||.-.-. |..-+++-.+...+.++ +|+=+.|.+.+-+
T Consensus 80 la~~L~~GDivIDGGNS----------------~y~Ds~rr~~~l~~kgi-~flD~GTSGG~~G 126 (300)
T COG1023 80 LAPLLSAGDIVIDGGNS----------------NYKDSLRRAKLLAEKGI-HFLDVGTSGGVWG 126 (300)
T ss_pred HHhhcCCCCEEEECCcc----------------chHHHHHHHHHHHhcCC-eEEeccCCCCchh
Confidence 66677777888876421 22233444455666665 8888888755544
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.019 Score=50.06 Aligned_cols=72 Identities=24% Similarity=0.226 Sum_probs=47.0
Q ss_pred CCC-CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC
Q 020608 1 MSK-EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG 77 (323)
Q Consensus 1 m~~-~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (323)
|+. ++++|.|+| +|-+|..++..|.+.|+ +|++.+|++... +..... ++.. ... .+..+.+++
T Consensus 1 ~~~~~~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~---~~a~~~-----g~~~---~~~--~~~~~~~~~ 66 (307)
T PRK07502 1 MSAPLFDRVALIG-IGLIGSSLARAIRRLGLAGEIVGADRSAETR---ARAREL-----GLGD---RVT--TSAAEAVKG 66 (307)
T ss_pred CCccCCcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEECCHHHH---HHHHhC-----CCCc---eec--CCHHHHhcC
Confidence 553 347899998 79999999999999985 899988864322 222211 1100 011 123455678
Q ss_pred CCEEEEccc
Q 020608 78 CTGVFHLAS 86 (323)
Q Consensus 78 ~d~Vih~a~ 86 (323)
+|+||.+..
T Consensus 67 aDvViiavp 75 (307)
T PRK07502 67 ADLVILCVP 75 (307)
T ss_pred CCEEEECCC
Confidence 999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 323 | ||||
| 2c29_D | 337 | Structure Of Dihydroflavonol Reductase From Vitis V | 3e-44 | ||
| 2rh8_A | 338 | Structure Of Apo Anthocyanidin Reductase From Vitis | 8e-31 | ||
| 2p4h_X | 322 | Crystal Structure Of Vestitone Reductase From Alfal | 5e-27 | ||
| 1ujm_A | 342 | Crystal Structure Of Aldehyde Reductase 2 From Spor | 8e-05 | ||
| 1y1p_A | 342 | X-Ray Structure Of Aldehyde Reductase With Nadph Le | 9e-05 |
| >pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. Length = 337 | Back alignment and structure |
|
| >pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis Vinifera Length = 338 | Back alignment and structure |
|
| >pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa (Medicago Sativa L.) Length = 322 | Back alignment and structure |
|
| >pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From Sporobolomyces Salmonicolor Aku4429 Length = 342 | Back alignment and structure |
|
| >pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph Length = 342 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 448 bits (1154), Expect = e-159
Identities = 124/328 (37%), Positives = 189/328 (57%), Gaps = 9/328 (2%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M ++E VCVTG SG IGSWLV LLER YTV ATV++ ++ ++ HL L A+T L L
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA-KALG 119
++ DL D + A+ GCTGVFH+A+P + +DP+N+++ P ++G + ++ + A
Sbjct: 61 WKADLADEGSFDEAIKGCTGVFHVATPMDFE-SKDPENEVIKPTIEGMLGIMKSCAAAKT 119
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI---WYPLSKTLAEKAAWEF 176
V+R+V TSS ++ V DE CW+D E+CR ++ Y +SKTLAE+AAW++
Sbjct: 120 VRRLVFTSSAGTVNIQ--EHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKY 177
Query: 177 AKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-VHFKDVALA 235
AKE +D + + P V+GP I ++ S++ L + G Y G VH D+ A
Sbjct: 178 AKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNA 237
Query: 236 HILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL 295
HI ++ENP A GR++C D + E YPEY+IP K L +KKL
Sbjct: 238 HIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKL 297
Query: 296 MDLGLQF-IPMDQIIKDSVESLKAKGFI 322
DLG +F ++ + +V++ +AKG +
Sbjct: 298 TDLGFEFKYSLEDMFTGAVDTCRAKGLL 325
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 434 bits (1118), Expect = e-154
Identities = 108/322 (33%), Positives = 167/322 (51%), Gaps = 10/322 (3%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATV-KNLSDERETAHLKALEGADTRLRLFQIDLL 66
VCVTGG+G +GSW++ LLE Y+V+ T+ + +R+ + L L GA +L F DL
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA-KALGVKRVVV 125
+ D+ AAA+ GC G+FH ASP V +P+ + V G + +L A + VKR +
Sbjct: 64 NPDSFAAAIEGCVGIFHTASPIDF-AVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIY 122
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW---YPLSKTLAEKAAWEFAKEKGL 182
TSS S+++ + V DE W+D + R + + Y +SKTLAEKA EF ++ G+
Sbjct: 123 TSSGSAVSFN--GKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGI 180
Query: 183 DVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242
DVV + ++G + P L S+ L L+ G + VH DVA AHI + EN
Sbjct: 181 DVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLEN 240
Query: 243 PSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQ-PGLLRTKDGAKKLMDLGLQ 301
GR+ C I + ++ YPEY I + + + G KKL+D G
Sbjct: 241 SVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFD 300
Query: 302 F-IPMDQIIKDSVESLKAKGFI 322
F ++ + D+++ K KG++
Sbjct: 301 FKYTIEDMFDDAIQCCKEKGYL 322
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 429 bits (1106), Expect = e-152
Identities = 112/332 (33%), Positives = 182/332 (54%), Gaps = 16/332 (4%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
+ CV GG+G + S LV LLL++ Y V+ TV++ ++++ +HL L+ L++F+
Sbjct: 8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELG-DLKIFRA 66
Query: 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA-KALGVKR 122
DL D + A + GC VFH+A+P EDP+N ++ PA++G VNV+ A +A VKR
Sbjct: 67 DLTDELSFEAPIAGCDFVFHVATPVHFA-SEDPENDMIKPAIQGVVNVMKACTRAKSVKR 125
Query: 123 VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE---IWYPLSKTLAEKAAWEFAKE 179
V++TSS +++T + V DE WTD E+ + YP SKTLAEKAAW+FA+E
Sbjct: 126 VILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEE 185
Query: 180 KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQG--------CTDTYENFFMGSVHFKD 231
+D++ V P + G + + +S+ + + L+ G + + H +D
Sbjct: 186 NNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVED 245
Query: 232 VALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDG 291
V AHI V E SA GR++C A + + +++ YP+Y +P D P +
Sbjct: 246 VCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPK-SKLIIS 304
Query: 292 AKKLMDLGLQF-IPMDQIIKDSVESLKAKGFI 322
++KL+ G F +++I +SVE KAKG +
Sbjct: 305 SEKLVKEGFSFKYGIEEIYDESVEYFKAKGLL 336
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 353 bits (907), Expect = e-122
Identities = 84/336 (25%), Positives = 122/336 (36%), Gaps = 24/336 (7%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
E +V VTG +G + S +V LLE Y V T ++ S +
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69
Query: 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA-KALGVKR 122
D+L A + G GV H+AS + ++++ PA+ GT+N L AA VKR
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVKR 126
Query: 123 VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE----------IWYPLSKTLAEKA 172
V+TSS S DE W E + Y SKT AE A
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELA 186
Query: 173 AWEFAKEKG--LDVVVVNPGTVMGPVIPPT--LNASMLMLLRLLQGCTDTYENFFMGS-- 226
AW+F E + V P +G + P ++ ++ L G
Sbjct: 187 AWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYY 246
Query: 227 VHFKDVALAHILVYENPSACG-RHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGL 285
V D+ L H+ P R + +A +LYP P D L
Sbjct: 247 VSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDL 306
Query: 286 LR--TKDGAKKLMDLGL-QFIPMDQIIKDSVESLKA 318
+ T + L LG + +++ IKD V S A
Sbjct: 307 SKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 342
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 2e-72
Identities = 55/344 (15%), Positives = 108/344 (31%), Gaps = 46/344 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V G +G +G + + + R ++ ++ L + ++LD
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIH------RPSSQIQRLAYLE--PECRVAEMLD 67
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+ + A+ G GV A + + A+ T A V R++
Sbjct: 68 HAGLERALRGLDGVIFSAGY--YPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVG 125
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
S ++ P+ E + D ++ Y L K ++ A E A+ GL VV+
Sbjct: 126 SAYAMPRHPQ---GLPGHEGLFYDSLPSGKS--SYVLCKWALDEQAREQARN-GLPVVIG 179
Query: 188 NPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACG 247
PG V+G + ++ + G Y + + ++ E
Sbjct: 180 IPGMVLGE--LDIGPTTGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRIGE 237
Query: 248 RHLCVEAISHYGDFVAKVAELYPEYDIPRLPK-----------------DTQPGLLRTK- 289
R+L D ++AEL + + P L T
Sbjct: 238 RYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETAI 297
Query: 290 ---------DGAKKLMDLG-LQFIPMDQIIKDSVESLKAKGFIS 323
DG K +LG +D + +++ + G+ +
Sbjct: 298 EVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRDNGYFN 341
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 5e-71
Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 37/259 (14%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M K + + + G SG +GS L++ L R + V A V++ ++ + L++
Sbjct: 1 MEK-VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK---------IKIENEHLKV 50
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
+ D+ D + G V +P + + + +K + ++ K GV
Sbjct: 51 KKADVSSLDEVCEVCKGADAVISAFNPGWNNP------DIYDETIKVYLTIIDGVKKAGV 104
Query: 121 KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK 180
R ++ S+ +P + E P K L E KEK
Sbjct: 105 NRFLMVGGAGSLFIAPGLRLM-----------DSGEVPENILPGVKALGEFYLNFLMKEK 153
Query: 181 GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-VHFKDVALAHILV 239
+D V +P M P + R G D + S + +D A A I
Sbjct: 154 EIDWVFFSPAADMRP---------GVRTGRYRLGKDDMIVDIVGNSHISVEDYAAAMIDE 204
Query: 240 YENPSACGRHLCVEAISHY 258
E+P + + H+
Sbjct: 205 LEHPKHHQERFTIGYLEHH 223
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-33
Identities = 67/337 (19%), Positives = 125/337 (37%), Gaps = 53/337 (15%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
++ VTG SG IG+ LV L E+ + ++ + ++ +D+
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIV-----------QRDTGGIKFITLDVS 49
Query: 67 DYDAIAAAVT--GCTGVFHLASPCIVDKVEDPQNQL-LNPAVKGTVNVLTAAKALGVKRV 123
+ D I AV +FHLA +DP +N + GT N+L AAK V++V
Sbjct: 50 NRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVN--MNGTYNILEAAKQHRVEKV 107
Query: 124 VVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLD 183
V+ S+I P + + ++K AE + ++ GLD
Sbjct: 108 VIPSTIGVFGPETPKN---------KVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLD 158
Query: 184 VVVVNPGTVMGPVIPPTLNASML---MLLRLLQGCTDTYENFFMGS-----VHFKDVALA 235
V + ++ PT + + ++ + Y+ + + ++ D A
Sbjct: 159 VRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKR--EKYKCYLAPNRALPMMYMPDALKA 216
Query: 236 HILVYENPSAC---GRHLCVEAISH-YGDFVAKVAELYPEYDIPRLP------KDTQPGL 285
+ +YE V A + + +K+ E PE++I T P
Sbjct: 217 LVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAATWPES 276
Query: 286 LRTKDGAKKLMDLGLQFIP---MDQIIKDSVESLKAK 319
L D ++ + G F +D+ I D ++ + K
Sbjct: 277 L---DSSEASNEWG--FSIEYDLDRTIDDMIDHISEK 308
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-31
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 28/195 (14%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
+++ + VTG +G +GS + L + V LSD + +A E +
Sbjct: 2 LNR----LLVTGAAGGVGSAIRPHLGTLAHEVR-----LSDIVDLGAAEAHE------EI 46
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
DL D A+ V C G+ HL VE P N +L + G N+ AA+ LG
Sbjct: 47 VACDLADAQAVHDLVKDCDGIIHLGGVS----VERPWNDILQANIIGAYNLYEAARNLGK 102
Query: 121 KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK 180
R+V SS +I P+ D E R+ + Y LSK E A + +
Sbjct: 103 PRIVFASSNHTIGYYPRTT---------RIDTEVPRRPDSLYGLSKCFGEDLASLYYHKF 153
Query: 181 GLDVVVVNPGTVMGP 195
++ + + G+
Sbjct: 154 DIETLNIRIGSCFPK 168
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-31
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 24/192 (12%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ VTG +G +G + L + L+D L L+ A Q DL D
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEILR-----LAD------LSPLDPAGPNEECVQCDLAD 54
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+A+ A V GC G+ HL VE P Q+L + G N+ AA+A G R+V S
Sbjct: 55 ANAVNAMVAGCDGIVHLGG----ISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFAS 110
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
S +I P+ + + + Y +SK E A + + G + +V
Sbjct: 111 SNHTIGYYPQTE---------RLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALV 161
Query: 188 NPGTVMGPVIPP 199
G+
Sbjct: 162 RIGSCTPEPNNY 173
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 9e-24
Identities = 56/251 (22%), Positives = 87/251 (34%), Gaps = 51/251 (20%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V +TG G IGS + LLLER V + N + T + L+ L + + D
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVG-IDNFA----TGRREHLKDHP-NLTFVEGSIAD 77
Query: 68 YDAIAAAVTGC--TGVFHLASPCIVDKVEDP-QNQLLNPAVKGTVNVLTAAKALGVKRVV 124
+ + + V H A +D + L N G NV+ AAK V R V
Sbjct: 78 HALVNQLIGDLQPDAVVHTA--ASYKDPDDWYNDTLTN--CVGGSNVVQAAKKNNVGRFV 133
Query: 125 VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW--YPLSKTLAEKAAWEFAKEKGL 182
+ P ++ +N Y +SK+ E + + GL
Sbjct: 134 YFQTALCYGVKPIQQPVRLDH----------PRNPANSSYAISKSANED----YLEYSGL 179
Query: 183 DVVVVNPGTVMGP-----VIPPTLNASMLMLLRLLQGCTDTYENFFMGS-----VHFKDV 232
D V V+GP +P + RL +G + F+ V KD+
Sbjct: 180 DFVTFRLANVVGPRNVSGPLP-------IFFQRLSEG-----KKCFVTKARRDFVFVKDL 227
Query: 233 ALAHILVYENP 243
A A + +
Sbjct: 228 ARATVRAVDGV 238
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 3e-23
Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 41/214 (19%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ VTGG+G +G ++V + T + + D
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPII-LTRSIGNKA----------INDYEYRVSDYTL 53
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDK-VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
D I + V HLA+ + + + N T N+ A + +V
Sbjct: 54 EDLINQ-LNDVDAVVHLAATRGSQGKISEFHD---N--EILTQNLYDACYENNISNIVYA 107
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVV 186
S+IS+ + P +E + Y +SK E ++++KGL +
Sbjct: 108 STISAYSDETSLP----WNEKELPLPDLM------YGVSKLACEHIGNIYSRKKGLCIKN 157
Query: 187 VNPGTVMGP------VIPPTLNASMLMLLRLLQG 214
+ + G +I + G
Sbjct: 158 LRFAHLYGFNEKNNYMIN-------RFFRQAFHG 184
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 5e-23
Identities = 47/206 (22%), Positives = 76/206 (36%), Gaps = 29/206 (14%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERET----AHLKALEGADT 56
+ + +V +TG +G IGS L+ LL+ V + N + + E +
Sbjct: 23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVG-LDNFATGHQRNLDEVRSLVSEKQWS 81
Query: 57 RLRLFQIDLLDYDAIAAAVTGCTGVFHLA-SPCIVDKVEDPQ-NQLLNPAVKGTVNVLTA 114
+ Q D+ + D A G V H A + + DP + N + G +N+L A
Sbjct: 82 NFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN--IDGFLNMLIA 139
Query: 115 AKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS-----KTLA 169
A+ V+ +S S+ P P K ED PLS K +
Sbjct: 140 ARDAKVQSFTYAASSSTYGDHPGLP----KVEDTIGK-----------PLSPYAVTKYVN 184
Query: 170 EKAAWEFAKEKGLDVVVVNPGTVMGP 195
E A F++ G + + V G
Sbjct: 185 ELYADVFSRCYGFSTIGLRYFNVFGR 210
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-22
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 20/194 (10%)
Query: 8 VCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V V GG+G +GS LV LLE VH V NL +A + +R + +
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHV-VDNLL----SAEKINVPDHP-AVRFSETSIT 88
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDK-VEDP-QNQLLNPAVKGTVNVLTAAK-ALGVKRV 123
D +A+ VFHLA+ + DP + N T+ + K +K+V
Sbjct: 89 DDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENN--TLTTLKLYERLKHFKRLKKV 146
Query: 124 VVTSSISSI--TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG 181
V +++ SI A + D + + Y +SK E + + K+
Sbjct: 147 VYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSP------YSMSKIFGEFYSVYYHKQHQ 200
Query: 182 LDVVVVNPGTVMGP 195
L V V GP
Sbjct: 201 LPTVRARFQNVYGP 214
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-22
Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 62/247 (25%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL-L 66
+ + G +G +G L+ L Y ++A R+ + D+
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGA------RKVEQVPQYNNVKAV----HFDVDW 52
Query: 67 DYDAIAAAVTGCTGVFHLA-----SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK 121
+ +A + G + +++ S VD + G V ++ AA+ VK
Sbjct: 53 TPEEMAKQLHGMDAIINVSGSGGKSLLKVD-------------LYGAVKLMQAAEKAEVK 99
Query: 122 RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG 181
R ++ S+I S+ P A D D Y ++K A+ KE
Sbjct: 100 RFILLSTIFSLQPEKWIGA----GFDALKD----------YYIAKHFADLYL---TKETN 142
Query: 182 LDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241
LD ++ PG + T G D + S DVA +
Sbjct: 143 LDYTIIQPGALTEE--EAT-------------GLIDINDEVS-ASNTIGDVADTIKELVM 186
Query: 242 NPSACGR 248
+ G+
Sbjct: 187 TDHSIGK 193
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 5e-22
Identities = 43/201 (21%), Positives = 72/201 (35%), Gaps = 34/201 (16%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ +TGG+G IG L L+ V + +L + EG + + +
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEVTV-LDDLR----VPPMIPPEG---TGKFLEKPV-- 59
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDK-VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+ ++ V+HLAS V + + P + L N V ++L ++GV +VVV
Sbjct: 60 LELEERDLSDVRLVYHLASHKSVPRSFKQPLDYLDN--VDSGRHLLALCTSVGVPKVVVG 117
Query: 127 SSISSI--TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGL-D 183
S+ + P ED Y SK E A + +
Sbjct: 118 ST-CEVYGQA-DTLP----TPEDSPLSPRSP------YAASKVGLEMVAGAHQRASVAPE 165
Query: 184 VVVVNPGTVMGP------VIP 198
V +V V GP ++P
Sbjct: 166 VGIVRFFNVYGPGERPDALVP 186
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 1e-21
Identities = 60/259 (23%), Positives = 90/259 (34%), Gaps = 56/259 (21%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ VTGG+G IGS LV L+E Y V V NLS + + + L DL D
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVV-VDNLS----SGRREFVNP---SAELHVRDLKD 54
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDK-VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
Y A VFH A+ V +P V T NVL A+ GV+ VV
Sbjct: 55 YSWGAGI--KGDVVFHFAANPEVRLSTTEPIVHFNE-NVVATFNVLEWARQTGVRTVVFA 111
Query: 127 SSISSI--TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDV 184
SS S++ P E+ Y +K E +A+ G+
Sbjct: 112 SS-STVYGDA-DVIP----TPEEEPYKPISV------YGAAKAAGEVMCATYARLFGVRC 159
Query: 185 VVVNPGTVMGP-----VIPPTLNASMLMLLRLLQG-----------CTDTYENFFMGSVH 228
+ V V+GP VI +++L + +Y ++
Sbjct: 160 LAVRYANVVGPRLRHGVIY-------DFIMKLRRNPNVLEVLGDGTQRKSY-------LY 205
Query: 229 FKDVALAHILVYENPSACG 247
+D A + ++
Sbjct: 206 VRDAVEATLAAWKKFEEMD 224
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 3e-21
Identities = 37/254 (14%), Positives = 67/254 (26%), Gaps = 57/254 (22%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
+ K + + G +G G ++ ++ Y V V R+++ L + +
Sbjct: 3 VKK----IAIFGATGQTGLTTLAQAVQAGYEVTVLV------RDSSRLPSEGPR--PAHV 50
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
D+L + V G V L +G N++ A KA GV
Sbjct: 51 VVGDVLQAADVDKTVAGQDAVIVLLGT-------RNDLSPTTVMSEGARNIVAAMKAHGV 103
Query: 121 KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK-AAWEFAKE 179
+VV +S + K P L + + +E
Sbjct: 104 DKVVACTSAFLLWDPTKVPPR----------------------LQAVTDDHIRMHKVLRE 141
Query: 180 KGLDVVVVNPGTVM-GPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHIL 238
GL V V P + P+ + + D+ +
Sbjct: 142 SGLKYVAVMPPHIGDQPLTGA---------YTVTLD-----GRGPSRVISKHDLGHFMLR 187
Query: 239 VYENPSACGRHLCV 252
G
Sbjct: 188 CLTTDEYDGHSTYP 201
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 3e-21
Identities = 67/274 (24%), Positives = 98/274 (35%), Gaps = 76/274 (27%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTGG+G IGS +V LL R V + NL+ T + + + F++DL D
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVA-VLDNLA----TGKRENVPK---GVPFFRVDLRD 54
Query: 68 YDAIAAAVTGC--TGVFHLASPCIVDK-VEDP-----QNQLLNPAVKGTVNVLTAAKALG 119
+ + A T V H A+ V VEDP N + G +N+L A + G
Sbjct: 55 KEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVN------LLGGLNLLEACRQYG 108
Query: 120 VKRVVVTSSISSI---TPSPKWPADKVKDEDCWTDEEYCRQNEI-WYPLSKTLAEKAAWE 175
V+++V S+ +I P A+ E Y SK E
Sbjct: 109 VEKLVFASTGGAIYGEVPE-GERAE-----------ETWPPRPKSPYAASKAAFEHYLSV 156
Query: 176 FAKEKGLDVVVVNPGTVMGP---------VIPPTLNASMLMLLRLLQG----------CT 216
+ + GL V + G V GP V+ + R+L+G
Sbjct: 157 YGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVA-------IFAERVLKGLPVTLYARKTPG 209
Query: 217 DTYENFFMGS-----VHFKDVALAHILVYENPSA 245
D V+ DVA AH L +
Sbjct: 210 D-------EGCVRDYVYVGDVAEAHALALFSLEG 236
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 5e-21
Identities = 57/262 (21%), Positives = 93/262 (35%), Gaps = 60/262 (22%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
MS + VTGG+G IGS +V L E + + NLS + + + + + RL
Sbjct: 1 MSL----IVVTGGAGFIGSHVVDKLSES-NEIVV-IDNLS----SGNEEFV---NEAARL 47
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLA-SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
+ DL D I + G V+H+A +P + E+P N V T +L A + G
Sbjct: 48 VKADLAA-DDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRN-NVLATYRLLEAMRKAG 105
Query: 120 VKRVVVTSSISSI--TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFA 177
V R+V TS+ S++ P T E+Y Y SK E +
Sbjct: 106 VSRIVFTST-STVYGEA-KVIP----------TPEDYPTHPISLYGASKLACEALIESYC 153
Query: 178 KEKGLDVVVVNPGTVMGP-----VIPPTLNASMLMLLRLLQG-----------CTDTYEN 221
+ + V+G VI +++L + +Y
Sbjct: 154 HTFDMQAWIYRFANVIGRRSTHGVIYD-------FIMKLKRNPEELEILGNGEQNKSY-- 204
Query: 222 FFMGSVHFKDVALAHILVYENP 243
++ D A +
Sbjct: 205 -----IYISDCVDAMLFGLRGD 221
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 7e-21
Identities = 31/245 (12%), Positives = 68/245 (27%), Gaps = 37/245 (15%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ + G +G GS ++ R + V A V R + + + Q D+ D
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIV------RNAGKITQTHK---DINILQKDIFD 53
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+ V V ++++ R++V
Sbjct: 54 LTLSDLS--DQNVVVDAYG---------ISPDEAEKHVTSLDHLISVLNGTVSPRLLVVG 102
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
+S+ + + + + Y A++ + + +
Sbjct: 103 GAASLQIDE--DGNTLLESKGLREAPYYPTARAQ-------AKQLEHLKSHQAEFSWTYI 153
Query: 188 NPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACG 247
+P + P + LL G + + +D A+A + E P+
Sbjct: 154 SPSAMFEP--GERTGDYQIGKDHLLFG------SDGNSFISMEDYAIAVLDEIERPNHLN 205
Query: 248 RHLCV 252
H V
Sbjct: 206 EHFTV 210
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 8e-21
Identities = 52/262 (19%), Positives = 76/262 (29%), Gaps = 53/262 (20%)
Query: 2 SKEAEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLR 59
S V VTG SG G + L E ++ V R + + G
Sbjct: 1 SANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV------RSAQGKEKIGGEAD--- 51
Query: 60 LFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVK------------- 106
+F D+ D D+I A G + L S K + P
Sbjct: 52 VFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWI 111
Query: 107 GTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK 166
G N + AAK GVK +VV S+ P D + + K
Sbjct: 112 GQKNQIDAAKVAGVKHIVVVGSMGGTNP----------------DHPLNKLGNGNILVWK 155
Query: 167 TLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226
AE+ + G ++ G ++ + LL G D +
Sbjct: 156 RKAEQY----LADSGTPYTIIRAGGLLDKEG---------GVRELLVGKDDELLQTDTKT 202
Query: 227 VHFKDVALAHILVYENPSACGR 248
V DVA I A +
Sbjct: 203 VPRADVAEVCIQALLFEEAKNK 224
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 3e-20
Identities = 36/245 (14%), Positives = 67/245 (27%), Gaps = 35/245 (14%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ V G +G GS +V+ R + V A V R+ GA +
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVV------RDPQKAADRLGATVA----TLVKEP 52
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
A + V S + ++++ + V +
Sbjct: 53 LVLTEADLDSVDAVVDALSVPWGSGRGY-------LHLDFATHLVSLLRNSDTLAVFILG 105
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
S S P P D ++ WY + ++ + +
Sbjct: 106 SASLAMPGADHPMI--------LDFPESAASQPWYDGALYQYY-EYQFLQMNANVNWIGI 156
Query: 188 NPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACG 247
+P + A LL G + ++ALA + E+P+A
Sbjct: 157 SPSEAFPSGPATSYVAGKDTLLVGEDG---------QSHITTGNMALAILDQLEHPTAIR 207
Query: 248 RHLCV 252
+ V
Sbjct: 208 DRIVV 212
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 88.3 bits (218), Expect = 5e-20
Identities = 50/283 (17%), Positives = 88/283 (31%), Gaps = 35/283 (12%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRY-----TVHATVKNLSDERETAHLKALEGADTRLRLF 61
V + G +G IG+ L +L V+ + D +
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWH---------EDNPINYV 53
Query: 62 QIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK 121
Q D+ D D A ++ T V H+ ++ + +N N K NVL A
Sbjct: 54 QCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEAN--SKMFRNVLDAVIPNCPN 111
Query: 122 -RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWE-FAKE 179
+ + + P K++ D E+ R Y E E K+
Sbjct: 112 LKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLK---YMNFYYDLEDIMLEEVEKK 168
Query: 180 KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQ-----------GCTDTYENFFMGSVH 228
+GL V PG + G +N + + GC ++ +
Sbjct: 169 EGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSD-CSD 227
Query: 229 FKDVALAHILVYENPSACGR--HLCVEAISHYGDFVAKVAELY 269
+A HI +P A ++ + + F +AE +
Sbjct: 228 ADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQF 270
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 8e-19
Identities = 50/211 (23%), Positives = 77/211 (36%), Gaps = 39/211 (18%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD--ERETAHLKALEGADT-- 56
+ + +TG +G IGS L+ LL+ V + N S + +K L +
Sbjct: 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIG-LDNFSTGHQYNLDEVKTLVSTEQWS 79
Query: 57 RLRLFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDK-VEDPQ-----NQLLNPAVKGTVN 110
R + D+ D + G V H A+ V + + DP N + G +N
Sbjct: 80 RFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATN------ITGFLN 133
Query: 111 VLTAAKALGVKRVVVTSSISSI-TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS---- 165
+L AAK V+ +S SS P P K E+ I PLS
Sbjct: 134 ILHAAKNAQVQSFTYAAS-SSTYGDHPALP----KVEE-----------NIGNPLSPYAV 177
Query: 166 -KTLAEKAAWEFAKEKGLDVVVVNPGTVMGP 195
K + E A +A+ G + + V G
Sbjct: 178 TKYVNEIYAQVYARTYGFKTIGLRYFNVFGR 208
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 9e-19
Identities = 57/334 (17%), Positives = 114/334 (34%), Gaps = 52/334 (15%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ + G G IG+ L L + SD R+ + + ++ LD
Sbjct: 5 ILIIGACGQIGTELTQKLRKL---YGTENVIASDIRK-LNTDVVNSG----PFEVVNALD 56
Query: 68 YDAIAAAVT--GCTGVFHLASPCIVDKVEDPQNQL-LNPAVKGTVNVLTAAKALGVKRVV 124
++ I V T ++ +A+ ++P LN + +VL AKA +K++
Sbjct: 57 FNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLN--MNSLFHVLNLAKAKKIKKIF 114
Query: 125 VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI-WYPLSKTLAEKAAWEFAKEKGLD 183
SSI+ P+ +Y Y +SK E+ + G+D
Sbjct: 115 WPSSIAVFGPTTPKE----------NTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVD 164
Query: 184 VVVVNPGTVMGPVIPP---TLNASMLMLLRLLQGCTDTYENFFMGS-----VHFKDVALA 235
V + ++ PP T + ++ + + + YE F ++ D A
Sbjct: 165 VRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIAD--KKYECFLSSETKMPMMYMDDAIDA 222
Query: 236 HILVYENPSACGRHLCVEAISH--------YGDFVAKVAELYPEYDIPRLPK--DTQPGL 285
I + + P + ++ + + E Y+ K D+ P
Sbjct: 223 TINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWPAS 282
Query: 286 LRTKDGAKKLMDLGLQFIP---MDQIIKDSVESL 316
+ D ++ D + ++ + KD +E L
Sbjct: 283 I---DDSQAREDWD--WKHTFDLESMTKDMIEHL 311
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 3e-18
Identities = 63/346 (18%), Positives = 105/346 (30%), Gaps = 67/346 (19%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKN--LSDERETAHLKALEGADTRLRLFQIDL 65
+ + G +G +G L L++ V+ L D + G + DL
Sbjct: 17 IAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEA---PAGFSGAVDARAADL 73
Query: 66 LDYDAIAAAV-TGCTGVFHLASPCIVDKVEDPQ-----NQLLNPAVKGTVNVLTAAKALG 119
V +FHLA+ + D N + GT + A +
Sbjct: 74 SAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRIN------LDGTRYLFDAIRIAN 127
Query: 120 VK-----RVVVTSSISSITPSPKWPADKVKDEDCWTDEE--YCRQNEIWYPLSKTLAEKA 172
K RVV TSSI+ P ++ T Y Q K + E
Sbjct: 128 GKDGYKPRVVFTSSIAVFGA----PLPYPIPDEFHTTPLTSYGTQ--------KAICELL 175
Query: 173 AWEFAKEKGLDVVVVNPGTVMGPVIPPTLNAS---MLMLLRLLQG----C---TDTYENF 222
++++ D + + T+ P AS +L L G
Sbjct: 176 LSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWH 235
Query: 223 -FMGS-----VHFKDVALAHILVYENPSACGRHLCV----EAIS-HYGDFVAKVAELYPE 271
S +H + + + N S G V EA+ G+ + P
Sbjct: 236 ASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAVALIRREPN 295
Query: 272 YDIPRLPKDTQPGLLRTKDGAKKLMDLGLQFIP---MDQIIKDSVE 314
I R+ + K A++ LG F ++II+ +E
Sbjct: 296 EMIMRMC-EGWAPGFEAKR-ARE---LG--FTAESSFEEIIQVHIE 334
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 4e-18
Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 52/243 (21%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V V G +G + +L+S L + + A V+N E A + + +L
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD-------IVVANLE- 75
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAV--KGTVNVLTAAKALGVKRVVV 125
+ + A V A + + G + + A+ G+KR ++
Sbjct: 76 -EDFSHAFASIDAVVFAAGSGPHTGADKTI------LIDLWGAIKTIQEAEKRGIKRFIM 128
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVV 185
SS+ ++ P + Y ++K LA+ + K LD
Sbjct: 129 VSSVGTVDPDQGPMNMR------------------HYLVAKRLAD----DELKRSSLDYT 166
Query: 186 VVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSA 245
+V PG + T ++ + + S+ DVA + +
Sbjct: 167 IVRPGPLSNE--ESTGKVTVS-----------PHFSEITRSITRHDVAKVIAELVDQQHT 213
Query: 246 CGR 248
G+
Sbjct: 214 IGK 216
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 6e-18
Identities = 36/247 (14%), Positives = 73/247 (29%), Gaps = 58/247 (23%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLR 59
M V + G G I +++ L +++ R+ A + +
Sbjct: 23 MKN----VLILGAGGQIARHVINQLADKQTIKQTLFA------RQPAKIHKPYPT--NSQ 70
Query: 60 LFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
+ D+L++ A+ A+ G V+ + +V+ A KA
Sbjct: 71 IIMGDVLNHAALKQAMQGQDIVYANLTG--------------EDLDIQANSVIAAMKACD 116
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK-AAWEFAK 178
VKR++ S+ P + + + L A + +
Sbjct: 117 VKRLIFVLSLGIYDEVPGKFVEWNNAV-----------------IGEPLKPFRRAADAIE 159
Query: 179 EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHIL 238
GL+ ++ P + ++ + T E F V K VA
Sbjct: 160 ASGLEYTILRPAWLTD---EDIIDYEL----------TSRNEPFKGTIVSRKSVAALITD 206
Query: 239 VYENPSA 245
+ + P
Sbjct: 207 IIDKPEK 213
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 1e-17
Identities = 52/263 (19%), Positives = 82/263 (31%), Gaps = 69/263 (26%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ +TGG+GC+GS L+ L + + + + N + T + L L + + + D
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEI-LVIDNFA----TGKREVLPPVA-GLSVIEGSVTD 76
Query: 68 YDAIAAAVTGC--TGVFHLASPCIVDKVEDPQNQLLNPA---VKGTVNVLTAAKALGVKR 122
+ A T V H A+ +D A V+G++NV AA GVKR
Sbjct: 77 AGLLERAFDSFKPTHVVHSAAAYKD--PDDW----AEDAATNVQGSINVAKAASKAGVKR 130
Query: 123 VVVTSS-----ISSITPSPKWPADKVKDEDCWTDEEYCRQNEI-WYPLSKTLAEKAAWEF 176
++ + + P D Y +SKT E F
Sbjct: 131 LLNFQTALCYGRPATVP---------IPID-------SPTAPFTSYGISKTAGEA----F 170
Query: 177 AKEKGLDVVVVNPGTVMGP-----VIPPTLNASMLMLLRLLQG-------CTDTYENFFM 224
+ VV + V GP IP RL G +
Sbjct: 171 LMMSDVPVVSLRLANVTGPRLAIGPIP-------TFYKRLKAGQKCFCSDTVRDF----- 218
Query: 225 GSVHFKDVALAHILVYENPSACG 247
+ D L + G
Sbjct: 219 --LDMSDFLAIADLSLQEGRPTG 239
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-17
Identities = 38/196 (19%), Positives = 75/196 (38%), Gaps = 26/196 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ +TG G I S + L + V A+ D ++ H+ D +DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTEDMFCD---EFHLVDLRV 83
Query: 68 YDAIAAAVTGCTGVFHLASPC-IVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+ G VF+LA+ + ++ + ++ + N++ AA+ G+KR
Sbjct: 84 MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYA 143
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW-------YPLSKTLAEKAAWEFAKE 179
SS + I P K + T ++++ W + L K E+ + K+
Sbjct: 144 SS-ACIYPEF-----KQLE----TTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKD 193
Query: 180 KGLDVVVVNPGTVMGP 195
G++ + + GP
Sbjct: 194 FGIECRIGRFHNIYGP 209
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 3e-17
Identities = 63/370 (17%), Positives = 102/370 (27%), Gaps = 78/370 (21%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLS----------------DERETAHLKALEG 53
V GG G G L ++ Y V V NL +
Sbjct: 16 VIGGDGYCGWATALHLSKKNYEV-CIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL 74
Query: 54 ADTRLRLFQIDLLDYDAIAAAVTG--CTGVFHLASPCIVDK-VEDPQNQLL----NPAVK 106
+ L+ D+ D++ +A + V H + D + N V
Sbjct: 75 TGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN--VI 132
Query: 107 GTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVK---DEDCWTDEEYCRQNEI-WY 162
GT+NVL A K G + +V +P ++ + TD + +Y
Sbjct: 133 GTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFY 192
Query: 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL----------------NASML 206
LSK K G+ +N G V G T A
Sbjct: 193 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNR 252
Query: 207 MLLRLLQG----------CTDTYENFFMGSVHFKDVALAHILVYENPSACGRHLCV---- 252
++ G T Y + +D + NP+ G
Sbjct: 253 FCVQAAVGHPLTVYGKGGQTRGY-------LDIRDTVQCVEIAIANPAKAGEFRVFNQFT 305
Query: 253 EAISHYGDFVAKVAELYPE----YDIPRLPKDTQPG-LLRTKDGAKKLMDLGLQFIP--- 304
E S + + V + + +P KLM+LGL+ P
Sbjct: 306 EQFS-VNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLE--PHYL 362
Query: 305 MDQIIKDSVE 314
D ++ +
Sbjct: 363 SDSLLDSLLN 372
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 2e-16
Identities = 49/325 (15%), Positives = 89/325 (27%), Gaps = 65/325 (20%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ +TG G +G L + L V + E
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKE------------------------- 37
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQN-QLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+ + +A+ + HLA V++ E + L N V +VL K ++
Sbjct: 38 -EELESALLKADFIVHLAG---VNRPEHDKEFSLGN--VSYLDHVLDILTRNTKKPAILL 91
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVV 186
S SSI + P Y SK E+ E+A+E G V +
Sbjct: 92 S--SSIQATQDNP----------------------YGESKLQGEQLLREYAEEYGNTVYI 127
Query: 187 VNPGTVMGPVIPPTLNASM-LMLLRLLQG--CTDTYENFFMGSVHFKDVALAHILVYENP 243
+ G P N+ + ++ + N + + D+ E
Sbjct: 128 YRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGT 187
Query: 244 SACGRHLCVEA------ISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMD 297
+ + D + K + + +P+L + L T D
Sbjct: 188 PTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYLSYLPSTD 247
Query: 298 LGLQFIPMDQIIKDSVESLKAKGFI 322
+ E +K
Sbjct: 248 FSYPLLMNVDDRGSFTEFIKTPDRG 272
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 3e-16
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 18/141 (12%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M+++ + + V G +G G+ L+ + + V A V +L L+A+ L
Sbjct: 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEE-LQAIPNVT----L 55
Query: 61 FQIDLLDY-DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
FQ LL+ + G F + E + ++ AAK G
Sbjct: 56 FQGPLLNNVPLMDTLFEGAHLAFINTTS--QAGDEIAIGK----------DLADAAKRAG 103
Query: 120 VKRVVVTSSISSITPSPKWPA 140
+ + SS+ + WPA
Sbjct: 104 TIQHYIYSSMPDHSLYGPWPA 124
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-15
Identities = 61/349 (17%), Positives = 107/349 (30%), Gaps = 76/349 (21%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+ VTGG+G IGS +V L ++ T + V NL D + +L L AD + + D L
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILV-VDNLKDGTKFVNLVDLNIADY---MDKEDFL 104
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+FH + E +++ + + +L + +
Sbjct: 105 IQIMAGEEFGDVEAIFHEGA--CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYA 161
Query: 127 SSISSI----TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGL 182
SS ++ T + + + SK L ++ + E
Sbjct: 162 SS-AATYGGRTSDFI-------------ESREYEKPLNVFGYSKFLFDEYVRQILPEANS 207
Query: 183 DVVVVNPGTVMGP----------VIPPTLNASMLMLLRLLQGCTDTYENFFMGS------ 226
+V V GP V + +L G + F GS
Sbjct: 208 QIVGFRYFNVYGPREGHKGSMASVAF-------HLNTQLNNGESPKL---FEGSENFKRD 257
Query: 227 -VHFKDVALAHILVYENPS------ACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPK 279
V+ DVA ++ EN GR A S + + + I +P
Sbjct: 258 FVYVGDVADVNLWFLENGVSGIFNLGTGR-----AES-FQAVADATLAYHKKGQIEYIPF 311
Query: 280 DTQPGLLRTKDGA------KKLMDLG--LQFIPMDQIIKDSVESLKAKG 320
P L+ + A L G F + + + + + L
Sbjct: 312 ---PDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA 357
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 2e-15
Identities = 60/349 (17%), Positives = 104/349 (29%), Gaps = 76/349 (21%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+ VTGG+G IGS +V L ++ T + V NL D + +L L AD + D L
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILV-VDNLKDGTKFVNLVDLNIADYMDK---EDFL 57
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+FH + E +++ + + +L + +
Sbjct: 58 IQIMAGEEFGDVEAIFHEGA--CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYA 114
Query: 127 SSISSI----TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGL 182
SS ++ T + + Y SK L ++ + E
Sbjct: 115 SS-AATYGGRTSDFI-------------ESREYEKPLNVYGYSKFLFDEYVRQILPEANS 160
Query: 183 DVVVV----------NPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS------ 226
+V M V + +L G + F GS
Sbjct: 161 QIVGFRYFNVYGPREGHKGSMASVAF-------HLNTQLNNGESPKL---FEGSENFKRD 210
Query: 227 -VHFKDVALAHILVYENPS------ACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPK 279
V+ DVA ++ EN GR A S + + + I +P
Sbjct: 211 FVYVGDVADVNLWFLENGVSGIFNLGTGR-----AES-FQAVADATLAYHKKGQIEYIPF 264
Query: 280 DTQPGLLRTKDGA------KKLMDLG--LQFIPMDQIIKDSVESLKAKG 320
P L+ + A L G F + + + + + L
Sbjct: 265 ---PDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA 310
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-14
Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 36/201 (17%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL-L 66
V + G +G IG L +LE ++ +R L E R+ F+ D+ +
Sbjct: 27 VLILGVNGFIGHHLSKRILETTDWE-VFGMDMQTDR-LGDLVKHE----RMHFFEGDITI 80
Query: 67 DYDAIAAAVTGCTGVFHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
+ + + V C + L + V+ P ++ + + ++ +A G K +V
Sbjct: 81 NKEWVEYHVKKCDVILPLVAIATPATYVKQPL-RVFELDFEANLPIVRSAVKYG-KHLVF 138
Query: 126 --TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW---------YPLSKTLAEKAAW 174
TS + + ++ D D + Y SK L ++ W
Sbjct: 139 PSTSEVYGMCADEQF------DPD---ASAL-----TYGPINKPRWIYACSKQLMDRVIW 184
Query: 175 EFAKEKGLDVVVVNPGTVMGP 195
+ E GL+ + P +GP
Sbjct: 185 GYGME-GLNFTLFRPFNWIGP 204
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-14
Identities = 38/198 (19%), Positives = 74/198 (37%), Gaps = 29/198 (14%)
Query: 8 VCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL- 65
V + G +G IG+ L LL Y V+ + SD + + D+
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYG-LDIGSDAI--SRFL----NHPHFHFVEGDIS 55
Query: 66 LDYDAIAAAVTGCTGVFHLASPC-IVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124
+ + I V C V L + ++ +P ++ + + ++ KR++
Sbjct: 56 IHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPL-RVFELDFEENLRIIRYCVKYR-KRII 113
Query: 125 VTSSISSITPSPKWPADKVKDEDCWTDEEY--CRQNEI----W-YPLSKTLAEKAAWEFA 177
S+ S + D + DE++ + W Y +SK L ++ W +
Sbjct: 114 FPST-SEVYGMC---------SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYG 163
Query: 178 KEKGLDVVVVNPGTVMGP 195
+++GL + P MGP
Sbjct: 164 EKEGLQFTLFRPFNWMGP 181
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 3e-14
Identities = 46/246 (18%), Positives = 72/246 (29%), Gaps = 45/246 (18%)
Query: 2 SKEAEVVCVTGGSGCIGSWLVSLLLER---RYTVHATV-------------KNLSDERET 45
S E V +TG +G +G +LV LL R + V K
Sbjct: 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPE 129
Query: 46 AHLKALEGADTRLRLFQIDLL---------DYDAIAAAVTGCTGVFHLASPCIVDKVEDP 96
E A RL + D + +A V + A+ V+ P
Sbjct: 130 LLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDL---IVDSAAM--VNAF--P 182
Query: 97 QNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCR 156
++L P V GT ++ A +K S+ P+ +D D
Sbjct: 183 YHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIE--PSAFTEDADIRVISPTRT 240
Query: 157 QNEIW---YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPV----IPPTLNASMLMLL 209
+ W Y SK E E L V V G ++ + +
Sbjct: 241 VDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDW----VT 296
Query: 210 RLLQGC 215
R++
Sbjct: 297 RMVLSL 302
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 2e-13
Identities = 35/245 (14%), Positives = 66/245 (26%), Gaps = 53/245 (21%)
Query: 8 VCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADT-RLRLFQIDL 65
+ + G +G I L + LL + R+ E D R+ + +
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLYG------RQLKTRIPPEIIDHERVTVIEGSF 61
Query: 66 LDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
+ + AVT VF A + +++ A ++RV+
Sbjct: 62 QNPGXLEQAVTNAEVVFVGAM----------------ESGSDMASIVKALSRXNIRRVIG 105
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVV 185
S P D P+S E+ A +E L+
Sbjct: 106 VSMAGLSGEFPVALEKWTFDN---------------LPISYVQGERQARNVLRESNLNYT 150
Query: 186 VVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVA--LAHILVYENP 243
++ + P + + F V + V + IL +
Sbjct: 151 ILRLTWLYND--PEXTDYEL----------IPEGAQFNDAQVSREAVVKAIFDILHAADE 198
Query: 244 SACGR 248
+ R
Sbjct: 199 TPFHR 203
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-12
Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 39/194 (20%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLR 59
M + ++V V GG+G G + LLE + V +N + A E
Sbjct: 2 MV-DKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKK------AAKELRLQGAE 54
Query: 60 LFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
+ Q D D + A+ G F + + E Q + A+ LG
Sbjct: 55 VVQGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQ--------GKLLADLARRLG 106
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE 179
+ VV + + + A + K E E+ ++
Sbjct: 107 LHYVVYSGLENIKKLTAGRLA-------------------AAHFDGKGEVE----EYFRD 143
Query: 180 KGLDVVVVNPGTVM 193
G+ + V
Sbjct: 144 IGVPMTSVRLPCYF 157
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-11
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS--DERETAHLKALEGADTRL 58
M K+ + + +TGG+G +GS L L+ + V V N +R H
Sbjct: 23 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTV-VDNFFTGRKRNVEHWI----GHENF 77
Query: 59 RLFQIDLLDYDAIAAAVTGCTGVFHLASPC-IVDKVEDPQNQLLNPAVKGTVNVLTAAKA 117
L D+++ I ++HLASP + + +P + L GT+N+L AK
Sbjct: 78 ELINHDVVEPLYIE-----VDQIYHLASPASPPNYMYNPI-KTLKTNTIGTLNMLGLAKR 131
Query: 118 LGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI---W-YPLSKTLAEKAA 173
+G R+++ S+ S + P + +++ + N I Y K +AE
Sbjct: 132 VG-ARLLLAST-SEVYGDP--------EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMC 181
Query: 174 WEFAKEKGLDVVVV 187
+ + K++G++V V
Sbjct: 182 YAYMKQEGVEVRVA 195
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 5e-11
Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 19/128 (14%)
Query: 10 VTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY 68
+TG +G +G+ + + + H V R + +R D +
Sbjct: 5 LTGATGHLGTHITNQAIANHIDHFHIGV------RNVEKVPDDWRGKVSVRQL--DYFNQ 56
Query: 69 DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128
+++ A G V I + + N++ AAK GV ++
Sbjct: 57 ESMVEAFKGMDTVV-FIPSIIHPSFK---------RIPEVENLVYAAKQSGVAHIIFIGY 106
Query: 129 ISSITPSP 136
+ +P
Sbjct: 107 YADQHNNP 114
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 18/120 (15%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
+TG +G +G +++ L++ + + + A A +G R Q D D
Sbjct: 4 ITGATGQLGHYVIESLMKT--VPASQIVAIVRNPAKAQALAAQGITVR----QADYGDEA 57
Query: 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129
A+ +A+ G + L S +V Q N V+ AAKA GVK + TS +
Sbjct: 58 ALTSALQGVEKLL-LISS---SEVGQRAPQHRN--------VINAAKAAGVKFIAYTSLL 105
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 46/202 (22%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLS-DERETAHLKALEGADTRLRLFQIDLLDY 68
+TGG+G G V +L+ + S DE + + + +E D R+R F D+ D
Sbjct: 26 ITGGTGSFGKCFVRKVLDT-TNA-KKIIVYSRDELKQSEMA-MEFNDPRMRFFIGDVRDL 82
Query: 69 DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNP--AVK----GTVNVLTAAKALGVKR 122
+ + A+ G H A+ V E NP +K G NV+ A + +
Sbjct: 83 ERLNYALEGVDICIHAAALKHVPIAE------YNPLECIKTNIMGASNVINACLKNAISQ 136
Query: 123 VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK---AAWEFAKE 179
V+ S+ + P N Y +K ++K +A F
Sbjct: 137 VIALSTDKAANPI----------------------N--LYGATKLCSDKLFVSANNFKGS 172
Query: 180 KGLDVVVVNPGTVM---GPVIP 198
VV G V+ G V+P
Sbjct: 173 SQTQFSVVRYGNVVGSRGSVVP 194
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 2e-10
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 20/126 (15%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
+ GG+G IGS V L++ +V V NL T H A+ + + DL D
Sbjct: 6 ICGGAGYIGSHAVKKLVDEGLSV-VVVDNLQ----TGHEDAI---TEGAKFYNGDLRDKA 57
Query: 70 AIAAAVT--GCTGVFHLASPCIV-DKVEDP----QNQLLNPAVKGTVNVLTAAKALGVKR 122
+ T V H A+ +V +E P N N V G + +L V +
Sbjct: 58 FLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNN---N--VYGALCLLEVMDEFKVDK 112
Query: 123 VVVTSS 128
+ +S+
Sbjct: 113 FIFSST 118
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 47/302 (15%), Positives = 92/302 (30%), Gaps = 60/302 (19%)
Query: 13 GSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIA 72
G G +G L L + + V ++ + ++ D+ D +A
Sbjct: 10 GCGDLGLELARRLTAQGHEVTGLRRSA------------QPMPAGVQTLIADVTRPDTLA 57
Query: 73 AAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSI 132
+ V + + D +L V+G N L+A + ++ V SS
Sbjct: 58 SIVHLRPEILVYCVA--ASEYSDEHYRLSY--VEGLRNTLSALEGAPLQHVFFVSSTG-- 111
Query: 133 TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTV 192
+ + W DE+ + + AE ++ +
Sbjct: 112 -----VYGQ---EVEEWLDEDTPPIAKDFSGKRMLEAEALLA------AYSSTILRFSGI 157
Query: 193 MGPVIPPTLNASMLMLLRLLQG-----CTDTYENFFMGSVHFKDVA--LAHILVYENPSA 245
GP L ++R Q + + N +H D A +A+++ + +
Sbjct: 158 YGP--------GRLRMIRQAQTPEQWPARNAWTNR----IHRDDGAAFIAYLIQQRSHAV 205
Query: 246 CGR--HLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTK--DGAKKLMDLGLQ 301
R + D + +A+ I P P + K A +L+ G Q
Sbjct: 206 PERLYIVTDNQPLPVHDLLRWLADR---QGIAY-PAGATPPVQGNKKLSNA-RLLASGYQ 260
Query: 302 FI 303
I
Sbjct: 261 LI 262
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
VTG +G +G ++ LL++ + + + E A A +G + R D +
Sbjct: 5 VTGATGQLGGLVIQHLLKK--VPASQIIAIVRNVEKASTLADQGVEVR----HGDYNQPE 58
Query: 70 AIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129
++ A G + + S D + NV+ AA+ GVK + T
Sbjct: 59 SLQKAFAGVSKLL-FISGPHYDNTL---------LIVQHANVVKAARDAGVKHIAYTGYA 108
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 38/191 (19%)
Query: 10 VTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADT------RLRLF 61
+TGG+G +GS L E + V + ++ + + +
Sbjct: 15 ITGGAGFVGSNLAFHFQENHPKAKVVV-LDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVI 73
Query: 62 QIDLLDYDAIA-AAVTGCTGVFHLA---SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKA 117
D+ + + +FH A ++++ + N + +N+L A++
Sbjct: 74 AADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKT---N--YQAFLNLLEIARS 128
Query: 118 LGVKRVVVTSSISSI---TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAW 174
K V+ SS + + T +P E Y SK ++ +
Sbjct: 129 KKAK-VIYASS-AGVYGNTKAPN-------------VVGKNESPENVYGFSKLCMDE--F 171
Query: 175 EFAKEKGLDVV 185
+ V
Sbjct: 172 VLSHSNDNVQV 182
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 3e-10
Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 34/200 (17%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M K++ V+ + GG+G IG +V+ + + + + L +L
Sbjct: 1 MDKKSRVL-IVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKL 59
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120
+ L D+ + A+ V + ++ Q + ++ A K G
Sbjct: 60 IEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQ-----------LKLVEAIKEAGN 108
Query: 121 KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAA-WEFAKE 179
+ + S + P S T +K +
Sbjct: 109 IKRFLPSEFGMDPDIMEHA---------------------LQPGSITFIDKRKVRRAIEA 147
Query: 180 KGLDVVVVNPGTVMGPVIPP 199
+ V+ G
Sbjct: 148 ASIPYTYVSSNMFAGYFAGS 167
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-08
Identities = 25/201 (12%), Positives = 56/201 (27%), Gaps = 40/201 (19%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLR 59
M + ++ + G +G IG + L+ + V+ + + + LE +
Sbjct: 1 MGSRSRIL-LIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGAN 59
Query: 60 LFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
+ + D+ ++ AV V ++ VN++ A K +G
Sbjct: 60 IVHGSIDDHASLVEAVKNVDVVISTVGS---------------LQIESQVNIIKAIKEVG 104
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAA-WEFAK 178
+ S + + P KA +
Sbjct: 105 TVKRFFPSEFGNDVDNVHA----------------------VEPAKSVFEVKAKVRRAIE 142
Query: 179 EKGLDVVVVNPGTVMGPVIPP 199
+G+ V+ G +
Sbjct: 143 AEGIPYTYVSSNCFAGYFLRS 163
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 3e-08
Identities = 41/247 (16%), Positives = 65/247 (26%), Gaps = 49/247 (19%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDL 65
V + G SG G L+ +LE+ V + L E A + +D
Sbjct: 21 VFILGASGETGRVLLKEILEQGLFSKVTLIGRR--------KLTFDEEAYKNVNQEVVDF 72
Query: 66 LDYDAIAAAVTGCTGVFHLASPCI-VDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124
D A+A G F C+ + + + + AKA G K
Sbjct: 73 EKLDDYASAFQGHDVGFC----CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFN 128
Query: 125 VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLD- 183
+ SS + D+ Y + K E +E D
Sbjct: 129 LLSSKGA-------------DKSSNFL--YLQ--------VKGEVEAK----VEELKFDR 161
Query: 184 VVVVNPGTVMGPVIPPTLNASMLM-LLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242
V PG ++ ++ L + SV V A +
Sbjct: 162 YSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGH-----SVPVVTVVRAMLNNVVR 216
Query: 243 PSACGRH 249
P
Sbjct: 217 PRDKQME 223
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 4e-08
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 34/147 (23%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS--DERETAHLKALEG----A 54
M+++ V VTGG+G IGS V LLE Y + N + ++L
Sbjct: 1 MAEK---VLVTGGAGYIGSHTVLELLEAGYLPVV-IDNFHNAFRGGGSLPESLRRVQELT 56
Query: 55 DTRLRLFQIDLLDYDAIAA--AVTGCTGVFHLA-------SPCIVDKVEDP----QNQLL 101
+ ++D+LD A+ V H A S V+ P +
Sbjct: 57 GRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGES------VQKPLDYYRV--- 107
Query: 102 NPAVKGTVNVLTAAKALGVKRVVVTSS 128
N + GT+ +L KA GVK +V +SS
Sbjct: 108 N--LTGTIQLLEIMKAHGVKNLVFSSS 132
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 6e-08
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 33/145 (22%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG----ADT 56
+++V VTGG+G IGS V L+E Y NLS + ++
Sbjct: 7 SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVV-ADNLS----NSTYDSVARLEVLTKH 61
Query: 57 RLRLFQIDLLDYDAIAA--AVTGCTGVFHLA-------SPCIVDKVEDP----QNQLLNP 103
+ +++DL D + V H A S + P N N
Sbjct: 62 HIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGES------TQIPLRYYHN---N- 111
Query: 104 AVKGTVNVLTAAKALGVKRVVVTSS 128
+ GTV +L + V + V +SS
Sbjct: 112 -ILGTVVLLELMQQYNVSKFVFSSS 135
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 34/145 (23%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG----ADT 56
MS + ++ VTGG+G IGS LL Y V NL + + +A+
Sbjct: 2 MSTKGTIL-VTGGAGYIGSHTAVELLAHGYDVVI-ADNLVN----SKREAIARIEKITGK 55
Query: 57 RLRLFQIDLLDYDAIAA--AVTGCTGVFHLA-------SPCIVDKVEDP----QNQLLNP 103
+ D+ D A+A T H A S V P +N N
Sbjct: 56 TPAFHETDVSDERALARIFDAHPITAAIHFAALKAVGES------VAKPIEYYRN---N- 105
Query: 104 AVKGTVNVLTAAKALGVKRVVVTSS 128
+ +++L + VKR+V +SS
Sbjct: 106 -LDSLLSLLRVMRERAVKRIVFSSS 129
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVH--ATVKNLSDE------RETAHLKALEGADTRLRLF 61
VTGG+G IGS V LL Y V L D R L ++ D RLR
Sbjct: 5 VTGGAGFIGSHFVRQLLAGAYPDVPADEVIVL-DSLTYAGNRAN--LAPVDA-DPRLRFV 60
Query: 62 QIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPA------VKGTVNVLTAA 115
D+ D +A + G + H A+ VD + + V+GT +L A
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVD------RSIAGASVFTETNVQGTQTLLQCA 114
Query: 116 KALGVKRVV 124
GV RVV
Sbjct: 115 VDAGVGRVV 123
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 45/202 (22%), Positives = 73/202 (36%), Gaps = 28/202 (13%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERET--AHLKALEGADTRLRLFQIDL 65
V VTG +G G WL L ATVK S T + + ++ D+
Sbjct: 12 VFVTGHTGFKGGWLSLWLQTMG----ATVKGYSLTAPTVPSLFETA-RVADGMQSEIGDI 66
Query: 66 LDYDAIAAAVTGC--TGVFHLASPCIVDK-VEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
D + + ++ VFH+A+ +V +P + V GTV +L A + +G +
Sbjct: 67 RDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVET-YSTNVMGTVYLLEAIRHVGGVK 125
Query: 123 VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAK---- 178
VV + + +W ++E + Y SK AE +
Sbjct: 126 AVVNITSDKCYDNKEWIWGYRENEAMGGYD--------PYSNSKGCAELVTSSYRNSFFN 177
Query: 179 -----EKGLDVVVVNPGTVMGP 195
+ G V V G V+G
Sbjct: 178 PANYGQHGTAVATVRAGNVIGG 199
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 39/232 (16%), Positives = 71/232 (30%), Gaps = 71/232 (30%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERR---YTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
+ +TG + +G LV LL + T +N +E L+ L + + + +I
Sbjct: 23 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE---LEDLAKNHSNIHILEI 79
Query: 64 DLLDYDAIAAA---VTGCTGVFHL-----------ASPCIVDKVEDPQN----------- 98
DL ++DA + G T L S I Q
Sbjct: 80 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITA--VRSQELLDTLQTNTVV 137
Query: 99 -----QLLNPAV-KGTVNVLTAAKALGVKRVV-VTSSISSIT--PSPKWPADKVKDEDCW 149
+ P + K + +G ++ ++S + SI A
Sbjct: 138 PIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYA--------- 188
Query: 150 TDEEYCRQNEIWYPLSKT----LAEKAAWEFAKEKGLDVVVVNPGTV---MG 194
Y SK+ + + + + + V ++PG V MG
Sbjct: 189 ------------YRTSKSALNAATKSLSVDL-YPQRIMCVSLHPGWVKTDMG 227
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 3e-07
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 33/136 (24%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG----ADTRLRLFQIDL 65
VTGGSG IGS LL+ + V + NL + + L + D+
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII-LDNLCN----SKRSVLPVIERLGGKHPTFVEGDI 59
Query: 66 LDYDAIAA--AVTGCTGVFHLA-------SPCIVDKVEDP----QNQLLNPAVKGTVNVL 112
+ + V H A S V+ P N N V GT+ ++
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGES------VQKPLEYYDN---N--VNGTLRLI 108
Query: 113 TAAKALGVKRVVVTSS 128
+A +A VK + +SS
Sbjct: 109 SAMRAANVKNFIFSSS 124
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 31/144 (21%)
Query: 10 VTGGSGCIGSWLV-SLLLERRYTVHATVKNLS----------------DERETAHLKALE 52
V GG+G IGS V +LL + ++V V +L + + +
Sbjct: 7 VCGGAGYIGSHFVRALLRDTNHSV-VIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPP 65
Query: 53 GADTRLRLFQIDLLDYDAIA---AAVTGCTGVFHLASPCIV-DKVEDP----QNQLLNPA 104
AD L D+ + D + V H+ + V + V DP N N
Sbjct: 66 WADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDN---N-- 120
Query: 105 VKGTVNVLTAAKALGVKRVVVTSS 128
V G + +L A +++ +SS
Sbjct: 121 VVGILRLLQAMLLHKCDKIIFSSS 144
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
+TGG G +GS L S L + + NLS + T +L L D+ + +
Sbjct: 6 ITGGCGFLGSNLASFALSQGIDL-IVFDNLSRKGATDNLHWLSS-LGNFEFVHGDIRNKN 63
Query: 70 AIAAAVTGC--TGVFHLASPCIVDK-VEDPQ-----NQLLNPAVKGTVNVLTAAKALGVK 121
+ +T FHLA + +++P N V GT+N+L A +
Sbjct: 64 DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEIN------VGGTLNLLEAVRQYNSN 117
Query: 122 RVVVTSS 128
++ SS
Sbjct: 118 CNIIYSS 124
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 18/158 (11%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL--EGADTRLRLFQIDL 65
+ + G +G IG +V ++ +A V+ + L + L + D+
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 66 LDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
D++ + A+ V A ++ V ++ A K G +
Sbjct: 65 NDHETLVKAIKQVDIVICAAGR---------------LLIEDQVKIIKAIKEAGNVKKFF 109
Query: 126 TSSISSITPSPKWPADKVKDEDCWTD-EEYCRQNEIWY 162
S + + + Y
Sbjct: 110 PSEFGLDVDRHDAVEPVRQVFEEKASIRRVIEAEGVPY 147
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 42/235 (17%), Positives = 72/235 (30%), Gaps = 66/235 (28%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRL 58
MS V VTG + IG LV L++ + AT +++ E LK+++ + R+
Sbjct: 1 MSPG--SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE---LKSIKDS--RV 53
Query: 59 RLFQIDLLDYDAIAAAV------TGCT---------GVFHLASPCIVDKVEDPQNQL--- 100
+ + + ++ V G GV QL
Sbjct: 54 HVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVN 113
Query: 101 ----------LNPAV-KGTVNVLTAAKALGVKRVV-VTSSISSIT--PSPKWPADKVKDE 146
L P + ++ V+ ++S + SIT S +
Sbjct: 114 TTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLA-- 171
Query: 147 DCWTDEEYCRQNEIWYPLSKT----LAEKAAWEFAKEKGLDVVVVNPGTV---MG 194
Y +SK A + K+ + VV PG V +G
Sbjct: 172 ---------------YRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTNLG 210
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 43/301 (14%), Positives = 79/301 (26%), Gaps = 55/301 (18%)
Query: 15 GC--IGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIA 72
G L L + + + T R ++A+ + + L +
Sbjct: 12 GHGYTARVLSRALAPQGWRIIGTS------RNPDQMEAIRASG-------AEPLLWPGEE 58
Query: 73 AAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSI 132
++ G T + +P D DP V + AA+A + V S+ +
Sbjct: 59 PSLDGVTHLLISTAP---DSGGDP--------VLAALGDQIAARAAQFRWVGYLSTTA-- 105
Query: 133 TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTV 192
D + W DE + + L + V +
Sbjct: 106 -----VYGDH---DGAWVDETTPLTPT--AARGRWRVMAEQQ-WQAVPNLPLHVFRLAGI 154
Query: 193 MGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACGR-HLC 251
GP L +H +D+A P ++C
Sbjct: 155 YGP------GRGPFSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAASMARPDPGAVYNVC 208
Query: 252 VEAISHYGDFVAKVAELY---PEYDIPRLPKDTQPGLLRTKDGAKKLM------DLGLQF 302
+ D +A AEL + D P K++ +LG++
Sbjct: 209 DDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRL 268
Query: 303 I 303
Sbjct: 269 K 269
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-06
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATV-------KNLSDERETAHLKALEGADTRLRLFQ 62
VTGG+G IGS V + VH TV N A+L+A+ R+ L
Sbjct: 9 VTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK------ANLEAIL--GDRVELVV 60
Query: 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPA------VKGTVNVLTAAK 116
D+ D + + + H A+ D N L +P+ GT +L AA+
Sbjct: 61 GDIADAELVDKLAAKADAIVHYAAESHND------NSLNDPSPFIHTNFIGTYTLLEAAR 114
Query: 117 ALGVK 121
++
Sbjct: 115 KYDIR 119
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 40/239 (16%), Positives = 66/239 (27%), Gaps = 55/239 (23%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M + V + G +G G L+ +L E L G L
Sbjct: 1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAEL-- 58
Query: 61 FQIDLLDYDAIAAAVTGCTGVFHLASPCIV--DKVEDPQNQLLNPAVKGTVNVLTAAKAL 118
L D C G + V+ + V A +
Sbjct: 59 ----LPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVD----------FDLPLAVGKRALEM 104
Query: 119 GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAK 178
G + +V S++ AD ++ I+Y K E+A +
Sbjct: 105 GARHYLVVSALG---------ADA--------------KSSIFYNRVKGELEQA----LQ 137
Query: 179 EKGLD-VVVVNPGTVMGPVIPPTL-NASMLMLLRLLQGCTDTYENFFMGSVHFKDVALA 235
E+G + + P + GP L + R+L G + D+A A
Sbjct: 138 EQGWPQLTIARPSLLFGPREEFRLAEILAAPIARILPG--------KYHGIEACDLARA 188
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 5e-06
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS---DERETAHLKALEGADTR 57
M +++ +TG S G L + V+A+++++ A D
Sbjct: 1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVD 60
Query: 58 LRLFQIDLLDYDAIAAAV 75
LR ++D+ ++ A+
Sbjct: 61 LRTLELDVQSQVSVDRAI 78
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 5e-06
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADT-RLR 59
MS+ A+V VTG S G + + TV T R T L L A R
Sbjct: 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTA------RRTEALDDLVAAYPDRAE 54
Query: 60 LFQIDLLDYDAIAAAV 75
+D+ D + I
Sbjct: 55 AISLDVTDGERIDVVA 70
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-05
Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 18/149 (12%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATV-KNLSDERETAHLKALEGADTRLR 59
+ V + G +G IG ++ + L+ + + KALE +
Sbjct: 6 VPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIV 65
Query: 60 LFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
+ + +A+ + + S + + Q + ++ A KA+G
Sbjct: 66 --YGLINEQEAMEKILKEHEIDI-VVS-TVGGESILDQ-----------IALVKAMKAVG 110
Query: 120 VKRVVVTSSISSIT--PSPKWPADKVKDE 146
+ + S P P + E
Sbjct: 111 TIKRFLPSEFGHDVNRADPVEPGLNMYRE 139
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 19/124 (15%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
+TG +G +G +L + L E+ V T +N + + + +D++D
Sbjct: 17 ITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLP------------NVEMISLDIMDSQ 64
Query: 70 AIAAAVTGC--TGVFHLASPCIVDKV--EDPQNQLLNPAVKGTVNVLTAAKALGVK-RVV 124
+ ++ +FHLA+ V K + + GT++VL A + + R++
Sbjct: 65 RVKKVISDIKPDYIFHLAAKSSV-KDSWLNKKGTFSTNVF-GTLHVLDAVRDSNLDCRIL 122
Query: 125 VTSS 128
S
Sbjct: 123 TIGS 126
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} Length = 525 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 28/157 (17%)
Query: 8 VCVTGGSGCIGS----WLVS------LLLERR---YTVHATVKNLSDERETAHLKALEGA 54
V VTG + L LL T D + L
Sbjct: 254 VLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL 313
Query: 55 DTRLRLFQIDLLDYDAIAAAVTGC------TGVFHLA---SPCIVDKVEDPQ-NQLLNPA 104
+ DL D +A A + G + V HL + + +++
Sbjct: 314 GATATVVTCDLTDAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAK 373
Query: 105 VKGTVNV--LTAAKALGVKRV---VVTSSISSITPSP 136
+++ L A R V+ SS+++I
Sbjct: 374 ATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGGA 410
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 5e-05
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 26/125 (20%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATV-------KNLSDERETAHLKALEGADTRLRLFQ 62
VTGG G IGS + +LE+ N A+LK LE D R +
Sbjct: 8 VTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNP------ANLKDLED-DPRYTFVK 60
Query: 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDK-VEDPQ-----NQLLNPAVKGTVNVLTAAK 116
D+ DY+ + V GV HLA+ VD+ + P+ N V GT +L + +
Sbjct: 61 GDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSN------VIGTYTLLESIR 114
Query: 117 ALGVK 121
+
Sbjct: 115 RENPE 119
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 6e-05
Identities = 31/198 (15%), Positives = 54/198 (27%), Gaps = 46/198 (23%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V +TG +G +G L + + + + R L L + R DL D
Sbjct: 3 VLITGATGGLGGAFARAL--KGHDLLLSG------RRAGALAEL-AREVGARALPADLAD 53
Query: 68 YDAIAAAVTGCTGV--------FHLASPCIVDKVEDPQNQL-LNPAVKGTVNVLTAAKAL 118
A + + + + + L + + VL A+
Sbjct: 54 ELEAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAH--LLTAAFVLKHARFQ 111
Query: 119 GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----TLAEKAAW 174
R V + P + A Y +K E A
Sbjct: 112 KGARAVFFGAYPRYVQVPGFAA---------------------YAAAKGALEAYLEAARK 150
Query: 175 EFAKEKGLDVVVVNPGTV 192
E +G+ +V+V V
Sbjct: 151 ELL-REGVHLVLVRLPAV 167
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 6e-05
Identities = 22/156 (14%), Positives = 47/156 (30%), Gaps = 20/156 (12%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ + GG+G IG+ +V L+ + + + S + GA + + +L +
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGA----IIVKGELDE 69
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
++ + + V + P + +L A K G + + S
Sbjct: 70 HEKLVELMKKVDVVISALAF---------------PQILDQFKILEAIKVAGNIKRFLPS 114
Query: 128 SISSITPSPK-WPADKVKDEDCWTDEEYCRQNEIWY 162
P + E + I Y
Sbjct: 115 DFGVEEDRINALPPFEALIERKRMIRRAIEEANIPY 150
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 7 VVCVTGGSGCIGSWLVSLLLE---RRYTVHATVKNLSD-ERETAHLKALEGADTRLRLFQ 62
VV +TG S IG L L + + V+AT+++L R +AL L Q
Sbjct: 4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQ 63
Query: 63 IDLLDYDAIAAAV 75
+D+ D ++AAA
Sbjct: 64 LDVRDSKSVAAAR 76
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* Length = 496 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 7e-05
Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 29/150 (19%)
Query: 8 VCVTGGSGCIGS----WLVS------LLLERRYTVHATVKNLSDERETAHLKALEGADTR 57
V VTGG+G IG L +L RR L E LE R
Sbjct: 242 VLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAE--------LEQLGVR 293
Query: 58 LRLFQIDLLDYDAIAAAVTGC------TGVFHLASPCIVDKVEDPQN-----QLLNPAVK 106
+ + D D +A+AA + T VFH A D L+ +
Sbjct: 294 VTIAACDAADREALAALLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLT 353
Query: 107 GTVNVLTAAKALGVKRVVVTSSISSITPSP 136
++ L + V+ SS +++ S
Sbjct: 354 AARHLHELTADLDLDAFVLFSSGAAVWGSG 383
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 38/255 (14%), Positives = 70/255 (27%), Gaps = 63/255 (24%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD 69
+TG G +G L + L + V L R+ DLLD
Sbjct: 152 ITGSRGLVGRALTAQLQTGGHEVIQ----LV--RKEPKPGKRFWDPLNP---ASDLLD-- 200
Query: 70 AIAAAVTGCTGVFHLASPCIVDK-VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128
G + HLA I + + + + V T + ++++S
Sbjct: 201 -------GADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS 253
Query: 129 ISSITPSPKWPADKVKDEDCWTDEEY----CRQNEIWYPLSKTLAEKAAWEFAKEKGLDV 184
D++ E+ + +++ CR W E A A + G V
Sbjct: 254 AVGFYGH--DRGDEILTEESESGDDFLAEVCRD---W--------EHATAP-ASDAGKRV 299
Query: 185 VVVNPGTVMGP---VIPPTLNASMLMLLRLLQGCTDTYENFFMGS-------VHFKDV-- 232
+ G + ++P + L G G + D+
Sbjct: 300 AFIRTGVALSGRGGMLPL-----LKTLFSTGLGGK-------FGDGTSWFSWIAIDDLTD 347
Query: 233 ALAHILVYENPSACG 247
+ + G
Sbjct: 348 IYYRAI--VDAQISG 360
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 26/127 (20%)
Query: 10 VTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE------RETAHLKALEGADTRLRLFQI 63
VTGG+G IGS V +L+ + N D +K+++ +
Sbjct: 29 VTGGAGFIGSNFVHYMLQS--YETYKIINF-DALTYSGNLNN--VKSIQD-HPNYYFVKG 82
Query: 64 DLLDYDAIAAAVTGC--TGVFHLASPCIVDK-VEDPQ-----NQLLNPAVKGTVNVLTAA 115
++ + + + + + + A+ VD+ +E+P N V GTV +L
Sbjct: 83 EIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTN------VIGTVTLLELV 136
Query: 116 KALGVKR 122
K +
Sbjct: 137 KKYPHIK 143
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* Length = 486 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 28/150 (18%)
Query: 7 VVCVTGGSGCIGS----WLVS------LLLERRYTVHATVKNLSDERETAHLKALEGADT 56
V VTGG+G +G WL LL+ R L E LE
Sbjct: 228 TVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAE--------LEALGA 279
Query: 57 RLRLFQIDLLDYDAIAAAVTGC------TGVFHLA---SPCIVDKVEDPQ-NQLLNPAVK 106
R + D+ D +++ + G + VFH A VD + + + V
Sbjct: 280 RTTVAACDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVL 339
Query: 107 GTVNVLTAAKALGVKRVVVTSSISSITPSP 136
G N+ + L + V+ SS +S +P
Sbjct: 340 GARNLHELTRELDLTAFVLFSSFASAFGAP 369
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 1e-04
Identities = 37/345 (10%), Positives = 97/345 (28%), Gaps = 102/345 (29%)
Query: 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHA---------TVKNLSDERETAHLKALEG 53
+ A+ V + G G +W+ + Y V +KN + L+ L+
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQK 204
Query: 54 ADTRLRLFQIDLLDYDA-----IAAAVTGCTGVFHLAS--PC--IVDKVEDPQNQLLNPA 104
++ D+ + I + + C ++ V++ +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK------- 257
Query: 105 VKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163
A A + ++++T+ +T D + + +
Sbjct: 258 ---------AWNAFNLSCKILLTTRFKQVT-------DFLSA----ATTTHISLDHHSMT 297
Query: 164 LSKTLAEK--AAWEFAKEKGL--DVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219
L+ + + + + L +V+ NP S++ ++ T+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----------RRLSIIA--ESIRDGLATW 344
Query: 220 ENFFMGSVHFKDVALAHILVYENPSACGRHLCVEAIS------HYGDFV---------AK 264
+N+ H L I+ + + +
Sbjct: 345 DNW----KHVNCDKLTTII----------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 265 VAELY----PEYDIPR-LPKDTQPGLL--RTKDGAKKLMDLGLQF 302
+ L + D+ + K + L+ + K+ + + L+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 8e-04
Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 44/159 (27%)
Query: 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN 202
V + DC ++ + LSK +E +D ++++ ++
Sbjct: 30 VDNFDCKDVQDMPKS-----ILSK-----------EE--IDHIIMSK---------DAVS 62
Query: 203 ASMLMLLRLLQGCTDTYENFFMGSVHFKDVA-LAHILVYEN--PSACGRHLCVEAISHYG 259
++ + LL + + F + V + L + E PS +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPS-----MMTRMYIEQR 116
Query: 260 DFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDL 298
D + +++ +Y++ RL + LR + L++L
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLK---LR-----QALLEL 147
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 39/194 (20%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLL 66
+ + GG+G IG ++V L + + L+ + + ++ E + + + ++
Sbjct: 7 IIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEME 66
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+++ + + + V P + ++++ A KA G + +
Sbjct: 67 EHEKMVSVLKQVDIVISALPF---------------PMISSQIHIINAIKAAGNIKRFLP 111
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAA-WEFAKEKGLDVV 185
S + P L +K + L
Sbjct: 112 SDFGCEEDRI----------------------KPLPPFESVLEKKRIIRRAIEAAALPYT 149
Query: 186 VVNPGTVMGPVIPP 199
V+ +
Sbjct: 150 YVSANCFGAYFVNY 163
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 28/152 (18%)
Query: 8 VCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL 65
+TGG G G L L R + V + + + ++ ++ + +
Sbjct: 1887 YVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNA 1946
Query: 66 LDYDAIAAAVTGC------TGVFHLA-----------SPCIVDKVEDPQNQLLNPAVKGT 108
D + +T GVF+LA +P V P GT
Sbjct: 1947 SSLDGARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDV-------SKPKYSGT 1999
Query: 109 VN--VLTAAKALGVKRVVVTSSISSITPSPKW 138
N +T + V+ SS+S +
Sbjct: 2000 ANLDRVTREACPELDYFVIFSSVSCGRGNAGQ 2031
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} Length = 511 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 27/148 (18%)
Query: 7 VVCVTGGSGCIGS----WLVS------LLLERRYTVHATVKNLSDERETAHLKALEGADT 56
V +TGG G IG L + +L RR L++E L G
Sbjct: 261 TVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEE--------LRGHGC 312
Query: 57 RLRLFQIDLLDYDAIAAAVTGC--TGVFHLA---SPCIVDKVEDPQ-NQLLNPAVKGTVN 110
+ D+ + DA+AA VT VFH A ++D + + V G
Sbjct: 313 EVVHAACDVAERDALAALVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAEL 372
Query: 111 V--LTAAKALGVKRVVVTSSISSITPSP 136
+ LT A G+ V+ SS++ +
Sbjct: 373 LHQLT-ADIKGLDAFVLFSSVTGTWGNA 399
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 40/204 (19%), Positives = 75/204 (36%), Gaps = 31/204 (15%)
Query: 3 KEAEVVCVTGGSGCIGSWLVS-LLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLF 61
+ V + G +G IG+ L LL E Y V+ ++ + +
Sbjct: 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGL--DIGSDA----ISRFLNHP-HFHFV 365
Query: 62 QIDLLDYDA-IAAAVTGCTGVFHLASPCI-VDKVEDPQNQL-LNPAVKGTVNVLTAAKAL 118
+ D+ + I V C V L + ++ +P L+ + + ++
Sbjct: 366 EGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELD--FEENLRIIRYCVKY 423
Query: 119 GVKRVVVTSSISSITPSPKW--PADKVKDEDCWTDEEYCRQNEI----W-YPLSKTLAEK 171
KR++ S+ S + +DK DED + W Y +SK L ++
Sbjct: 424 R-KRIIFPST------SEVYGMCSDKYFDEDHSN----LIVGPVNKPRWIYSVSKQLLDR 472
Query: 172 AAWEFAKEKGLDVVVVNPGTVMGP 195
W + +++GL + P MGP
Sbjct: 473 VIWAYGEKEGLQFTLFRPFNWMGP 496
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 100.0 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 100.0 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 100.0 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.98 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.97 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.97 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.97 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.97 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.97 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.97 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.96 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.96 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.96 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.96 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.96 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.96 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.96 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.96 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.96 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.96 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.96 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.96 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.96 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.96 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.96 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.96 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.96 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.96 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.96 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.96 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.96 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.96 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.96 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.96 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.96 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.96 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.96 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.96 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.95 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.95 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.95 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.95 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.95 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.95 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.95 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.95 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.95 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.95 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.95 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.95 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.95 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.95 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.95 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.95 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.95 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.95 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.95 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.95 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.95 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.95 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.95 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.95 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.95 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.95 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.95 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.95 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.95 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.95 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.95 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.95 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.95 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.95 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.95 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.95 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.95 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.95 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.95 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.95 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.95 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.95 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.95 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.95 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.95 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.95 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.95 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.95 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.95 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.95 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.95 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.95 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.95 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.95 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.95 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.95 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.95 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.95 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.95 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.95 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.95 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.95 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.95 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.95 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.95 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.95 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.95 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.95 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.95 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.95 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.94 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.94 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.94 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.94 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.94 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.94 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.94 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.94 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.94 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.94 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.94 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.94 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.94 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.94 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.94 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.94 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.94 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.94 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.94 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.94 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.94 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.94 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.94 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.94 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.94 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.94 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.94 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.94 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.94 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.94 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.94 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.94 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.94 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.94 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.94 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.94 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.94 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.94 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.94 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.94 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.94 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.94 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.94 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.94 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.94 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.94 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.94 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.94 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.94 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.94 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.94 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.94 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.94 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.94 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.93 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.93 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.93 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.93 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.93 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.93 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.93 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.93 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.93 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.93 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.93 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.93 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.93 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.93 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.93 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.93 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.93 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.93 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.93 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.93 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.93 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.93 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.93 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.93 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.93 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.93 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.92 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.92 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.92 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.92 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.92 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.92 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.92 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.92 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.92 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.91 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.91 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.91 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.9 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.9 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.9 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.9 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.89 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.89 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.88 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.88 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.86 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.86 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.85 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.85 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.85 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.83 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.82 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.78 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.77 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.76 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.75 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.74 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.74 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.73 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.73 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.7 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.54 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.53 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.41 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.38 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 99.23 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.13 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.08 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 99.08 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 99.02 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.99 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.99 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.88 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.83 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.79 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.73 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.68 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.68 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.67 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.65 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.65 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.62 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.62 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.47 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.45 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.39 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.3 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.29 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.23 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.22 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.18 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.18 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.14 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 98.09 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.01 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.0 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.0 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.98 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.94 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.91 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.9 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.9 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.88 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.86 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.85 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.84 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.84 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.84 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.81 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.81 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.78 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.76 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.72 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.71 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.7 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.7 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.7 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.7 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.69 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.69 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.69 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.66 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.64 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.64 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.63 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.62 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.61 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.61 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.59 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.56 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.55 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.54 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.54 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.53 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.52 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.52 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.51 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.51 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.51 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.5 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.48 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.48 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.47 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.47 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.46 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.46 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.46 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.45 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 97.44 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 97.44 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.43 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 97.43 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.42 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.42 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.39 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.38 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.38 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.38 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.35 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.35 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.33 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.33 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.33 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.31 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.3 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.29 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.28 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.27 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.27 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.27 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.25 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.24 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 97.23 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 97.22 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.21 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.21 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.21 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.21 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 97.18 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.18 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.17 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.16 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.15 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.15 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.14 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.14 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.13 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.13 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.09 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.09 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.09 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.08 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.07 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.07 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.07 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 97.06 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 97.04 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.04 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.03 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.03 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.02 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.99 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.99 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.98 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 96.97 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.97 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.96 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.95 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 96.93 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.93 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.93 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.92 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.92 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.92 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.92 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 96.9 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.9 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.89 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.89 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 96.89 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.88 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 96.88 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.87 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.86 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 96.86 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.84 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.83 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 96.81 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 96.8 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.8 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 96.8 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 96.8 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.79 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.79 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.79 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.78 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.77 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 96.76 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.76 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.74 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 96.74 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 96.73 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.73 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 96.73 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.72 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.72 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.72 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.69 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=352.25 Aligned_cols=308 Identities=16% Similarity=0.082 Sum_probs=243.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHH-HHHHHhhccCC--CCCeEEEEccCCCHhHHHHHhcCC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDER-ETAHLKALEGA--DTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
.+++|+|||||||||||++|+++|+++|++|++++|+..... ....+...... ..+++++.+|++|.+++.++++++
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV 101 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence 356799999999999999999999999999999999765322 22222221000 047899999999999999999999
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
|+|||+|+.........++...+++|+.++.+++++|++.++++|||+||.+++.... ..+++|+++..|.
T Consensus 102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~----~~~~~E~~~~~p~----- 172 (351)
T 3ruf_A 102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHP----ALPKVEENIGNPL----- 172 (351)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCC----CSSBCTTCCCCCC-----
T ss_pred CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCC----CCCCccCCCCCCC-----
Confidence 9999999975444444567788999999999999999999999999999995544332 5688999887664
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCC-c--cCcCCCcccHHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDV 232 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~ 232 (323)
+.|+.+|.++|.+++.+++++|++++++||+++|||+..... .....++..+..+.+.. . +...++|+|++|+
T Consensus 173 -~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dv 251 (351)
T 3ruf_A 173 -SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNV 251 (351)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHH
T ss_pred -ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHH
Confidence 789999999999999999888999999999999999865431 23445667777787665 3 3456779999999
Q ss_pred HHHHHHhhcC--CCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCC-----CCCCCCCCCccccccchhH-hhhCCcc-
Q 020608 233 ALAHILVYEN--PSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPR-----LPKDTQPGLLRTKDGAKKL-MDLGLQF- 302 (323)
Q Consensus 233 a~~~~~~~~~--~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~lG~~~- 302 (323)
|++++.++.. ...++.||++ ++.+|+.|+++.+.+.+|...... .............+|++|+ +.|||+|
T Consensus 252 a~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 331 (351)
T 3ruf_A 252 IQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPN 331 (351)
T ss_dssp HHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHCCCCC
T ss_pred HHHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhCCCCC
Confidence 9999999987 2345569985 788999999999999987522111 1111223344678999999 7799999
Q ss_pred cCHHHHHHHHHHHHHHc
Q 020608 303 IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 303 ~~~~~~l~~~~~~~~~~ 319 (323)
++++++|+++++|++++
T Consensus 332 ~~~~~~l~~~~~~~~~~ 348 (351)
T 3ruf_A 332 IKIREGLRLSMPWYVRF 348 (351)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 89999999999999875
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=344.66 Aligned_cols=320 Identities=38% Similarity=0.668 Sum_probs=234.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|..++|+|||||||||||++|+++|+++|++|+++.|+++.......+..+.....+++++.+|++|.+++.++++++|+
T Consensus 1 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 80 (337)
T 2c29_D 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTG 80 (337)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSE
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCE
Confidence 77788999999999999999999999999999999998754333222222211112578899999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhhh--cc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC--RQ 157 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~ 157 (323)
|||+|+.... ...+.....+++|+.++.+++++|++.+ +++|||+||.+++++.... ..+++|+.+...... ..
T Consensus 81 Vih~A~~~~~-~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~--~~~~~E~~~~~~~~~~~~~ 157 (337)
T 2c29_D 81 VFHVATPMDF-ESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQ--LPVYDESCWSDMEFCRAKK 157 (337)
T ss_dssp EEECCCCCCS-SCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSC--CSEECTTCCCCHHHHHHHC
T ss_pred EEEeccccCC-CCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCC--CcccCcccCCchhhhcccC
Confidence 9999986522 1223334689999999999999998877 8999999999767764321 346788766443221 11
Q ss_pred -CCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC-cCCCcccHHHHHHH
Q 020608 158 -NEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN-FFMGSVHFKDVALA 235 (323)
Q Consensus 158 -~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~i~v~D~a~~ 235 (323)
+.+.|+.||.++|.+++.+++++|++++++||++||||..................|....++. ....|+|++|+|++
T Consensus 158 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a 237 (337)
T 2c29_D 158 MTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNA 237 (337)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHH
Confidence 2346999999999999998877899999999999999986543222111111123443322211 12339999999999
Q ss_pred HHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc-cCHHHHHHHHHH
Q 020608 236 HILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQIIKDSVE 314 (323)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~~~~ 314 (323)
++.+++++...+.|+++++.+|+.|+++.+.+.++...+|..............+|++|+++|||+| ++++++|+++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~e~l~~~~~ 317 (337)
T 2c29_D 238 HIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVD 317 (337)
T ss_dssp HHHHHHCTTCCEEEEECCEEEEHHHHHHHHHHHCTTSCCCSCCTTCCTTCCCCEECCHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred HHHHhcCcccCceEEEeCCCCCHHHHHHHHHHHCCCccCCCCCCcccCCCccccccHHHHHHcCCCcCCCHHHHHHHHHH
Confidence 9999987666678988877899999999999988654444322222223345678999998899999 899999999999
Q ss_pred HHHHcCCCC
Q 020608 315 SLKAKGFIS 323 (323)
Q Consensus 315 ~~~~~~~~~ 323 (323)
|+++++.++
T Consensus 318 ~~~~~~~~~ 326 (337)
T 2c29_D 318 TCRAKGLLP 326 (337)
T ss_dssp HHHHTTSSC
T ss_pred HHHHcCCCC
Confidence 999998764
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-49 Score=348.20 Aligned_cols=308 Identities=18% Similarity=0.151 Sum_probs=237.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC-
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG- 77 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~- 77 (323)
|.++||+|||||||||||++|+++|+++| ++|++++|....... ..+..+. ...+++++.+|++|.+.+.+++++
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~-~~l~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~ 97 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNL-NNVKSIQ-DHPNYYFVKGEIQNGELLEHVIKER 97 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCG-GGGTTTT-TCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccch-hhhhhhc-cCCCeEEEEcCCCCHHHHHHHHhhc
Confidence 34577999999999999999999999999 788888776422111 1122111 135899999999999999999986
Q ss_pred -CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhc
Q 020608 78 -CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCR 156 (323)
Q Consensus 78 -~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 156 (323)
+|+|||+|+.........++...+++|+.++.+++++|++.++++|||+||.+++..... ..+++|+++..|.
T Consensus 98 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~---~~~~~E~~~~~p~--- 171 (346)
T 4egb_A 98 DVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGK---TGRFTEETPLAPN--- 171 (346)
T ss_dssp TCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCS---SCCBCTTSCCCCC---
T ss_pred CCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCc---CCCcCCCCCCCCC---
Confidence 999999999876655667788899999999999999999999999999999955544322 5688998887664
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHHHHH
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDVA 233 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~a 233 (323)
+.|+.+|.++|.+++.++.+++++++++||+.+|||+.... .....++..+..+.+.. . +...++|||++|+|
T Consensus 172 ---~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 247 (346)
T 4egb_A 172 ---SPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE-KLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHC 247 (346)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHH
T ss_pred ---ChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc-chHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHH
Confidence 77999999999999999988899999999999999987543 34445667777787655 3 34566799999999
Q ss_pred HHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHH
Q 020608 234 LAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDI-PRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQII 309 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l 309 (323)
++++.+++++..++.||++ ++.+++.|+++.+.+.+|.... .............+.+|++|+ ++|||+| ++++++|
T Consensus 248 ~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l 327 (346)
T 4egb_A 248 SAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQGL 327 (346)
T ss_dssp HHHHHHHHHCCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCCCHHHHH
T ss_pred HHHHHHHhcCCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCCCHHHHH
Confidence 9999999987766679986 5679999999999999975321 111122223344578999999 7899999 8999999
Q ss_pred HHHHHHHHHcC
Q 020608 310 KDSVESLKAKG 320 (323)
Q Consensus 310 ~~~~~~~~~~~ 320 (323)
+++++|+++++
T Consensus 328 ~~~~~~~~~~~ 338 (346)
T 4egb_A 328 QETVQWYEKNE 338 (346)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHHHHhhh
Confidence 99999999864
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=338.85 Aligned_cols=291 Identities=14% Similarity=0.111 Sum_probs=235.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||+|||||||||||++|+++|+++|++|++++|++.... + .+++++.+|++ .+++.++++++|+|||+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~-------~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~ 69 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA----I-------NDYEYRVSDYT-LEDLINQLNDVDAVVHL 69 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-HHHHHHHTTTCSEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc----C-------CceEEEEcccc-HHHHHHhhcCCCEEEEc
Confidence 589999999999999999999999999999999832211 1 16889999999 99999999999999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 164 (323)
|+..... ++...+++|+.++.+++++|++.++++|||+||.++ |+... ..+++|+++..|. +.|+.
T Consensus 70 a~~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~v-yg~~~---~~~~~E~~~~~p~------~~Y~~ 135 (311)
T 3m2p_A 70 AATRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISA-YSDET---SLPWNEKELPLPD------LMYGV 135 (311)
T ss_dssp CCCCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG-CCCGG---GCSBCTTSCCCCS------SHHHH
T ss_pred cccCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHH-hCCCC---CCCCCCCCCCCCC------chhHH
Confidence 9975442 667799999999999999999999999999999844 44432 4678998877664 77999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHHHHHHHHHHhhc
Q 020608 165 SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 165 sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
+|.++|.+++.++.+++++++++||+.+|||..... .....++..+..|.+.. . ++..++|+|++|+|++++.+++
T Consensus 136 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~ 214 (311)
T 3m2p_A 136 SKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN-YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALK 214 (311)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C-CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC-CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHh
Confidence 999999999999988999999999999999987543 34445667777777665 2 4455679999999999999999
Q ss_pred CCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCC-CCCCCccccccchhH-hhhCCcc-cCHHHHHHHHHHHHH
Q 020608 242 NPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKD-TQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVESLK 317 (323)
Q Consensus 242 ~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~ 317 (323)
++..++.||++ ++.+|+.|+++.+.+.+|........+. .........+|++|+ +.|||+| ++++++|+++++|++
T Consensus 215 ~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~ 294 (311)
T 3m2p_A 215 QEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLMR 294 (311)
T ss_dssp CTTCCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHHC
T ss_pred cCCCCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 87766779985 7789999999999999975321111121 223445688999999 6699999 799999999999999
Q ss_pred HcCCC
Q 020608 318 AKGFI 322 (323)
Q Consensus 318 ~~~~~ 322 (323)
+++..
T Consensus 295 ~~~~~ 299 (311)
T 3m2p_A 295 GLDDV 299 (311)
T ss_dssp C----
T ss_pred hcccC
Confidence 88754
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=342.39 Aligned_cols=315 Identities=34% Similarity=0.568 Sum_probs=227.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
+|+|||||||||||++|+++|+++|++|+++.|+.++......+..+. ...+++++.+|++|.+++.++++++|+|||+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 87 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIAGCDFVFHV 87 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence 589999999999999999999999999999999765422222222222 1236889999999999999999999999999
Q ss_pred ccCCccCCCCCch-hhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhh--hccCCC
Q 020608 85 ASPCIVDKVEDPQ-NQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEY--CRQNEI 160 (323)
Q Consensus 85 a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~ 160 (323)
|+.... ...++ .+.+++|+.++.+++++|++.+ +++|||+||.+++++........+++|+.+..+.. +..+..
T Consensus 88 A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~ 165 (338)
T 2rh8_A 88 ATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPT 165 (338)
T ss_dssp SSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCC
T ss_pred CCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCcc
Confidence 986532 22223 4589999999999999999885 89999999987555332110023677876543221 111112
Q ss_pred -chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc--------CcCCCcccHHH
Q 020608 161 -WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE--------NFFMGSVHFKD 231 (323)
Q Consensus 161 -~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~i~v~D 231 (323)
.|+.||.++|.+++.+++++|++++++||+++|||............+.....|.+..++ .+.++|+|++|
T Consensus 166 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~D 245 (338)
T 2rh8_A 166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVED 245 (338)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHH
T ss_pred chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcccEEEHHH
Confidence 599999999999999887789999999999999998654322222222222344322111 12347999999
Q ss_pred HHHHHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc-cCHHHHHH
Q 020608 232 VALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQIIK 310 (323)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~ 310 (323)
+|++++.+++++...+.||++++.+|+.|+++.+.+.++...+|...... .......+|++|+++|||+| ++++++|+
T Consensus 246 va~a~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~d~~k~~~lG~~p~~~l~~gl~ 324 (338)
T 2rh8_A 246 VCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDF-PPKSKLIISSEKLVKEGFSFKYGIEEIYD 324 (338)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSEEECHHHHHHHHHHHCTTSCCCCCCTTS-CSSCSCCCCCHHHHHHTCCCSCCHHHHHH
T ss_pred HHHHHHHHHcCCCcCCcEEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCC-CcCcceeechHHHHHhCCCCCCCHHHHHH
Confidence 99999999987666678998877899999999999988754444322221 11223788999997799999 89999999
Q ss_pred HHHHHHHHcCCCC
Q 020608 311 DSVESLKAKGFIS 323 (323)
Q Consensus 311 ~~~~~~~~~~~~~ 323 (323)
++++|+++++.++
T Consensus 325 ~~~~~~~~~~~~~ 337 (338)
T 2rh8_A 325 ESVEYFKAKGLLQ 337 (338)
T ss_dssp HHHHHHHHTTCC-
T ss_pred HHHHHHHHcCCCC
Confidence 9999999998764
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-48 Score=337.35 Aligned_cols=313 Identities=34% Similarity=0.534 Sum_probs=229.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEec-CCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVK-NLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
+|+|||||||||||++|+++|+++|++|+++.| ++++......+..+.....+++++.+|++|.++++++++++|+|||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 80 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH 80 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence 579999999999999999999999999999988 5422111111222211112578889999999999999999999999
Q ss_pred cccCCccCCCCCc-hhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccccCCCCCCCCccccCCCCCChhhh--ccCC
Q 020608 84 LASPCIVDKVEDP-QNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC--RQNE 159 (323)
Q Consensus 84 ~a~~~~~~~~~~~-~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~~~ 159 (323)
+|+... ....+ ....+++|+.++.+++++|++. ++++|||+||.+++++.... ..+++|+++....++ ..+.
T Consensus 81 ~A~~~~--~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~p~ 156 (322)
T 2p4h_X 81 TASPID--FAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKD--KDVLDESDWSDVDLLRSVKPF 156 (322)
T ss_dssp CCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSC--CSEECTTCCCCHHHHHHHCCT
T ss_pred cCCccc--CCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCC--CeecCCccccchhhhcccCcc
Confidence 997531 22222 3458999999999999999987 78999999999766654321 346788776543221 1122
Q ss_pred C-chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHH
Q 020608 160 I-WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHIL 238 (323)
Q Consensus 160 ~-~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~ 238 (323)
+ .|+.||.++|.++..+++++|++++++||+++|||............+.....|....++....+|+|++|+|++++.
T Consensus 157 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~ 236 (322)
T 2p4h_X 157 GWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIY 236 (322)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHH
Confidence 3 599999999999999887789999999999999997653322222222233445433333333479999999999999
Q ss_pred hhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCCCC--CCCCCCCCccccccchhHhhhCCcc-cCHHHHHHHHHHH
Q 020608 239 VYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRL--PKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQIIKDSVES 315 (323)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~~~~~ 315 (323)
+++++...|.||++++.+|+.|+++.+.+.++...+|.. .... .......+|++|+++|||+| ++++++|+++++|
T Consensus 237 ~~~~~~~~g~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~k~~~lG~~p~~~~~~~l~~~~~~ 315 (322)
T 2p4h_X 237 LLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEI-KGARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQC 315 (322)
T ss_dssp HHHSCCCCEEEECCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTC-CCEECCEECCHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred HhhCcCCCCCEEEcCCCCCHHHHHHHHHHhCCCCCCCCCccccCC-CCCcceecccHHHHHhCCccCCCHHHHHHHHHHH
Confidence 998765566799778889999999999998865444432 1111 11245788999997799999 8999999999999
Q ss_pred HHHcCCC
Q 020608 316 LKAKGFI 322 (323)
Q Consensus 316 ~~~~~~~ 322 (323)
+++++.+
T Consensus 316 ~~~~~~~ 322 (322)
T 2p4h_X 316 CKEKGYL 322 (322)
T ss_dssp HHHHTCC
T ss_pred HHhcCCC
Confidence 9998864
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=336.19 Aligned_cols=306 Identities=17% Similarity=0.122 Sum_probs=236.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHH-HHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERE-TAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 80 (323)
++|+|||||||||||++++++|+++|++|++++|+...... ...+.... +.+++++.+|++|.+++.++++ ++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT--GKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH--SCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc--CCCceEEEeecCCHHHHHHHHhccCCcE
Confidence 56899999999999999999999999999999997654322 12222211 3478899999999999999998 8999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|||+|+........+.+...+++|+.++.++++++++.++++||++||.++ |+... ..+++|+.+..+. +
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~-~g~~~---~~~~~e~~~~~~~------~ 151 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATV-YGVPE---RSPIDETFPLSAT------N 151 (341)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG-BCSCS---SSSBCTTSCCBCS------S
T ss_pred EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceE-ecCCC---CCCCCCCCCCCCC------C
Confidence 999999764433344566789999999999999999999899999999855 44433 5678888876654 7
Q ss_pred chHHHHHHHHHHHHHHHHhCC-ccEEEEcCCCccCCCCCC------C--CchhHHHHHHHHcCC--CCC---------cc
Q 020608 161 WYPLSKTLAEKAAWEFAKEKG-LDVVVVNPGTVMGPVIPP------T--LNASMLMLLRLLQGC--TDT---------YE 220 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~-~~~~~~Rp~~v~G~~~~~------~--~~~~~~~~~~~~~g~--~~~---------~~ 220 (323)
.|+.+|.++|.+++.++.+++ ++++++||+++|||.... . .......+.....+. +.. .+
T Consensus 152 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 231 (341)
T 3enk_A 152 PYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDG 231 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTS
T ss_pred hhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCC
Confidence 799999999999999988875 999999999999996421 0 112222344444443 211 23
Q ss_pred CcCCCcccHHHHHHHHHHhhcC---CCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-
Q 020608 221 NFFMGSVHFKDVALAHILVYEN---PSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL- 295 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~---~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (323)
.+.++|+|++|+|++++.++++ ...++.||++ ++.+|+.|+++.+.+.+|........+........+.+|++|+
T Consensus 232 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 311 (341)
T 3enk_A 232 TGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAA 311 (341)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHH
T ss_pred CeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCCCCccccccCHHHHH
Confidence 4567799999999999999986 2345679984 7889999999999999875321111222223445678999999
Q ss_pred hhhCCcc-cCHHHHHHHHHHHHHHcCC
Q 020608 296 MDLGLQF-IPMDQIIKDSVESLKAKGF 321 (323)
Q Consensus 296 ~~lG~~~-~~~~~~l~~~~~~~~~~~~ 321 (323)
++|||+| ++++++|+++++|++++..
T Consensus 312 ~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 312 ETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp HHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 7899999 9999999999999999864
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=331.47 Aligned_cols=294 Identities=19% Similarity=0.155 Sum_probs=228.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||+|||||||||||++|+++|+++| .++++.+....... . ...+++++.+|+++ +++.++++++|+|||+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~-----~---~~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~ 70 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEE-----F---VNEAARLVKADLAA-DDIKDYLKGAEEVWHI 70 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGG-----G---SCTTEEEECCCTTT-SCCHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChh-----h---cCCCcEEEECcCCh-HHHHHHhcCCCEEEEC
Confidence 5799999999999999999999999 45555543322111 1 13478899999999 8899999999999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 164 (323)
|+......+..++...+++|+.++.++++++++.++++|||+||.++| +... ..+++|+.+..|. +.|+.
T Consensus 71 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vy-g~~~---~~~~~E~~~~~~~------~~Y~~ 140 (313)
T 3ehe_A 71 AANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVY-GEAK---VIPTPEDYPTHPI------SLYGA 140 (313)
T ss_dssp CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGG-CSCS---SSSBCTTSCCCCC------SHHHH
T ss_pred CCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHh-CcCC---CCCCCCCCCCCCC------CHHHH
Confidence 997655556778899999999999999999999888999999998554 4433 5678888776554 77999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC-CC-Cc--cCcCCCcccHHHHHHHHHHhh
Q 020608 165 SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC-TD-TY--ENFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 165 sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~-~~--~~~~~~~i~v~D~a~~~~~~~ 240 (323)
+|.++|.+++.++.++|++++++||+++|||+... .....++.++..+. +. .. +.+.++|+|++|+|++++.++
T Consensus 141 sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~ 218 (313)
T 3ehe_A 141 SKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH--GVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGL 218 (313)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC--SHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc--ChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHh
Confidence 99999999999998899999999999999998653 33445566666663 32 23 445678999999999999999
Q ss_pred cCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCC---CCCCCccccccchhHhhhCCcc-cCHHHHHHHHHHH
Q 020608 241 ENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKD---TQPGLLRTKDGAKKLMDLGLQF-IPMDQIIKDSVES 315 (323)
Q Consensus 241 ~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~~~~~ 315 (323)
+....++.||++ ++++|+.|+++.+.+.+|..+....... .........+|++|+++|||+| ++++++|+++++|
T Consensus 219 ~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~e~l~~~~~~ 298 (313)
T 3ehe_A 219 RGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKPRYNSEEAVRMAVRD 298 (313)
T ss_dssp TCCSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred ccCCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 965556679975 6789999999999999975321111111 1122334678999998899999 8999999999999
Q ss_pred HHHcC
Q 020608 316 LKAKG 320 (323)
Q Consensus 316 ~~~~~ 320 (323)
++++.
T Consensus 299 ~~~~~ 303 (313)
T 3ehe_A 299 LVEDL 303 (313)
T ss_dssp HHHHH
T ss_pred HHhCc
Confidence 99864
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-47 Score=336.00 Aligned_cols=307 Identities=16% Similarity=0.088 Sum_probs=237.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcH-HHHHHHh-hccC-CCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE-RETAHLK-ALEG-ADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~-~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
++||+|||||||||||++|+++|+++|++|++++|+.... .....+. .+.. ...+++++.+|++|.+++.++++++|
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 104 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 104 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCC
Confidence 4678999999999999999999999999999999976431 1222111 1110 01478999999999999999999999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
+|||+|+.........++...+++|+.++.+++++|++.++++|||+||.+++.... ..+++|+++..|.
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~----~~~~~E~~~~~~~------ 174 (352)
T 1sb8_A 105 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHP----GLPKVEDTIGKPL------ 174 (352)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCC----CSSBCTTCCCCCC------
T ss_pred EEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCC----CCCCCCCCCCCCC------
Confidence 999999975432233456788999999999999999999999999999996654432 4578888876554
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCC-cc--CcCCCcccHHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDT-YE--NFFMGSVHFKDVA 233 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~-~~--~~~~~~i~v~D~a 233 (323)
+.|+.+|.++|.+++.++.+++++++++||+.+|||...... .....++..+..|.+.. .+ +..++|+|++|+|
T Consensus 175 ~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva 254 (352)
T 1sb8_A 175 SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTV 254 (352)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHH
Confidence 779999999999999998888999999999999999865331 22334556667777654 33 4456799999999
Q ss_pred HHHHHhhcCC--CCCccEEEE-cCccCHHHHHHHHHHHC---CCCCC--CCCCCCCCCCCccccccchhH-hhhCCcc-c
Q 020608 234 LAHILVYENP--SACGRHLCV-EAISHYGDFVAKVAELY---PEYDI--PRLPKDTQPGLLRTKDGAKKL-MDLGLQF-I 303 (323)
Q Consensus 234 ~~~~~~~~~~--~~~~~~~~~-~~~~~~~e~~~~i~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~ 303 (323)
++++.++... ..++.||++ ++.+|+.|+++.+.+.+ |.... +.+.+..........+|++|+ ++|||+| +
T Consensus 255 ~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 334 (352)
T 1sb8_A 255 QANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKY 334 (352)
T ss_dssp HHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCCC
T ss_pred HHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCHHHHHHHhCCCCCC
Confidence 9999988762 245569985 67899999999999998 54221 111111122334568899999 7799999 8
Q ss_pred CHHHHHHHHHHHHHHc
Q 020608 304 PMDQIIKDSVESLKAK 319 (323)
Q Consensus 304 ~~~~~l~~~~~~~~~~ 319 (323)
+++++|+++++|++++
T Consensus 335 ~~~e~l~~~~~~~~~~ 350 (352)
T 1sb8_A 335 DVSAGVALAMPWYIMF 350 (352)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999999875
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-47 Score=330.95 Aligned_cols=294 Identities=23% Similarity=0.212 Sum_probs=233.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|||||||||||++|+++|+++|++|++++|+....... ...+++++.+|++|.+ +.+++++ |+|||+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A 70 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF--------VNPSAELHVRDLKDYS-WGAGIKG-DVVFHFA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG--------SCTTSEEECCCTTSTT-TTTTCCC-SEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh--------cCCCceEEECccccHH-HHhhcCC-CEEEECC
Confidence 5899999999999999999999999999999876432211 1347899999999998 8888888 9999999
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+.........++...+++|+.++.+++++|++.++++|||+||.+++. ... ..+++|+.+..|. +.|+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg-~~~---~~~~~e~~~~~p~------~~Y~~s 140 (312)
T 3ko8_A 71 ANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYG-DAD---VIPTPEEEPYKPI------SVYGAA 140 (312)
T ss_dssp SSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGC-SCS---SSSBCTTSCCCCC------SHHHHH
T ss_pred CCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhC-CCC---CCCCCCCCCCCCC------ChHHHH
Confidence 976555566778889999999999999999999999999999995544 332 5678888776654 779999
Q ss_pred HHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC--Cc--cCcCCCcccHHHHHHHHHHhhc
Q 020608 166 KTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD--TY--ENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 166 K~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~--~~--~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
|.++|.+++.++.+++++++++||+++|||+... .....++.++..+... .. +...++|+|++|+|++++.+++
T Consensus 141 K~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~ 218 (312)
T 3ko8_A 141 KAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH--GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWK 218 (312)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS--SHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC--ChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHH
Confidence 9999999999998889999999999999998653 2344456666666432 23 3456789999999999999998
Q ss_pred C----CCCCccEEEE-cCccCHHHHHHHHHHHCCCCC----CCCCCCC--CCCCCccccccchhH-hhhCCcc-cCHHHH
Q 020608 242 N----PSACGRHLCV-EAISHYGDFVAKVAELYPEYD----IPRLPKD--TQPGLLRTKDGAKKL-MDLGLQF-IPMDQI 308 (323)
Q Consensus 242 ~----~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~ 308 (323)
+ ...++.||++ ++.+|+.|+++.+.+.++... +|..... .........+|++|+ +.|||+| ++++++
T Consensus 219 ~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~ 298 (312)
T 3ko8_A 219 KFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEA 298 (312)
T ss_dssp HHHHSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHHHH
T ss_pred hccccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHHHH
Confidence 7 3345569985 678999999999999986432 1111100 112334578999999 8899999 899999
Q ss_pred HHHHHHHHHHcCC
Q 020608 309 IKDSVESLKAKGF 321 (323)
Q Consensus 309 l~~~~~~~~~~~~ 321 (323)
|+++++|+++++.
T Consensus 299 l~~~~~~~~~~~~ 311 (312)
T 3ko8_A 299 VKKTAEDLAKELW 311 (312)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998763
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=332.59 Aligned_cols=301 Identities=17% Similarity=0.116 Sum_probs=233.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHH--CCCEEEEEecCCCcHHHHH-HHhhc----cCCCCCeEEEEccCCCHhHHHH
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLE--RRYTVHATVKNLSDERETA-HLKAL----EGADTRLRLFQIDLLDYDAIAA 73 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~--~g~~V~~~~r~~~~~~~~~-~~~~~----~~~~~~~~~~~~Dl~~~~~~~~ 73 (323)
|++++|+|||||||||||++|+++|++ +|++|++++|+........ ..+.+ .....++.++.+|++|.+++++
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence 346789999999999999999999999 9999999999765221110 00000 1113467899999999999999
Q ss_pred H-hcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCCh
Q 020608 74 A-VTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDE 152 (323)
Q Consensus 74 ~-~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~ 152 (323)
+ ..++|+|||+|+.... +..++...+++|+.++.+++++|++.+++ |||+||. .+|+.. ..+++|+++..|
T Consensus 86 ~~~~~~D~vih~A~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~-~vyg~~----~~~~~E~~~~~p 157 (362)
T 3sxp_A 86 LEKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSA-GVYGNT----KAPNVVGKNESP 157 (362)
T ss_dssp HTTSCCSEEEECCCCCGG--GCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEG-GGGCSC----CSSBCTTSCCCC
T ss_pred hhccCCCEEEECCccCCc--cccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcH-HHhCCC----CCCCCCCCCCCC
Confidence 8 7899999999996543 45678889999999999999999999876 9999998 455544 338889887766
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCC-cc--CcCCCc
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDT-YE--NFFMGS 226 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~-~~--~~~~~~ 226 (323)
. +.|+.+|.++|.+++.++.+ ++++++||+++|||+..... .....++..+..+.+.. .+ ...++|
T Consensus 158 ~------~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (362)
T 3sxp_A 158 E------NVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDF 229 (362)
T ss_dssp S------SHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEEC
T ss_pred C------ChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEcc
Confidence 4 78999999999999988754 89999999999999865321 23445666777777644 23 355679
Q ss_pred ccHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCC-CCCCccccccchhH-hhhCCcc-
Q 020608 227 VHFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDT-QPGLLRTKDGAKKL-MDLGLQF- 302 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~lG~~~- 302 (323)
+|++|+|++++.+++.+.. |.||++ ++++++.|+++.+.+.+|...+. ..+.. ........+|++|+ +.|||+|
T Consensus 230 i~v~Dva~ai~~~~~~~~~-g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 307 (362)
T 3sxp_A 230 VYIEDVIQANVKAMKAQKS-GVYNVGYSQARSYNEIVSILKEHLGDFKVT-YIKNPYAFFQKHTQAHIEPTILDLDYTPL 307 (362)
T ss_dssp EEHHHHHHHHHHHTTCSSC-EEEEESCSCEEEHHHHHHHHHHHHCCCEEE-CCC-------CCCCBCCHHHHHHHCCCCC
T ss_pred EEHHHHHHHHHHHHhcCCC-CEEEeCCCCCccHHHHHHHHHHHcCCCceE-ECCCCCcCcccceecCHHHHHHHhCCCCC
Confidence 9999999999999998755 489984 77899999999999999832211 11111 23345678999999 8899999
Q ss_pred cCHHHHHHHHHHHHHHc
Q 020608 303 IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 303 ~~~~~~l~~~~~~~~~~ 319 (323)
++++++|+++++|++++
T Consensus 308 ~~l~e~l~~~~~~~~~~ 324 (362)
T 3sxp_A 308 YDLESGIKDYLPHIHAI 324 (362)
T ss_dssp CCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 89999999999999765
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-46 Score=327.78 Aligned_cols=303 Identities=21% Similarity=0.190 Sum_probs=231.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++|+|||||||||||++|+++|+++| ++|++++|...... .+.+..+.. ..+++++.+|++|.+.+.+++.++|+|
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~-~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~v 79 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSN-PANLKDLED-DPRYTFVKGDVADYELVKELVRKVDGV 79 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC-GGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHTCSEE
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCc-hhHHhhhcc-CCceEEEEcCCCCHHHHHHHhhCCCEE
Confidence 45789999999999999999999986 89999998642111 111122211 347899999999999999999999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc-CEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV-KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
||+|+......+..++...+++|+.++.+++++|.+.+. ++|||+||.++ |+... ..+++|+++..+. +
T Consensus 80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v-yg~~~---~~~~~E~~~~~~~------~ 149 (336)
T 2hun_A 80 VHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEV-YGDIL---KGSFTENDRLMPS------S 149 (336)
T ss_dssp EECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGG-GCCCS---SSCBCTTBCCCCC------S
T ss_pred EECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHH-HCCCC---CCCcCCCCCCCCC------C
Confidence 999997543223345678899999999999999988764 79999999955 44332 4578888766543 6
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-cc--CcCCCcccHHHHHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YE--NFFMGSVHFKDVALAHI 237 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~--~~~~~~i~v~D~a~~~~ 237 (323)
.|+.+|.++|.+++.++.+++++++++||+.+|||..... .....++..+..+.+.. ++ ....+|+|++|+|++++
T Consensus 150 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~ 228 (336)
T 2hun_A 150 PYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPE-KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIE 228 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTT-SHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcC-chHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHH
Confidence 7999999999999999988899999999999999986432 23334556666776544 23 34567999999999999
Q ss_pred HhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHHH
Q 020608 238 LVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD-IPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSV 313 (323)
Q Consensus 238 ~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~ 313 (323)
.++++...++.||++ ++.+|+.|+++.+.+.+|... ..............+.+|++|+ +.|||+| ++++++|++++
T Consensus 229 ~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~ 308 (336)
T 2hun_A 229 LVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTFDEGIKKTI 308 (336)
T ss_dssp HHHHHCCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 999866555679986 567999999999999997532 1111111112223467899999 7799999 89999999999
Q ss_pred HHHHHc
Q 020608 314 ESLKAK 319 (323)
Q Consensus 314 ~~~~~~ 319 (323)
+|++++
T Consensus 309 ~~~~~~ 314 (336)
T 2hun_A 309 DWYLKN 314 (336)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999875
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=328.49 Aligned_cols=307 Identities=17% Similarity=0.167 Sum_probs=233.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
|+ +||+|||||||||||++|+++|+++ |++|++++|+...... ..+..+. ..+++++.+|++|.+++.++++++
T Consensus 1 Ms-~m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~ 76 (348)
T 1oc2_A 1 MS-QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK-ANLEAIL--GDRVELVVGDIADAELVDKLAAKA 76 (348)
T ss_dssp ---CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG-GGTGGGC--SSSEEEEECCTTCHHHHHHHHTTC
T ss_pred CC-cCcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCh-hHHhhhc--cCCeEEEECCCCCHHHHHHHhhcC
Confidence 54 4789999999999999999999998 8999999997532111 1112221 247899999999999999999999
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCC--------CCCCccccCCCCC
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPK--------WPADKVKDEDCWT 150 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~--------~~~~~~~~e~~~~ 150 (323)
|+|||+|+......+..++...+++|+.++.+++++|.+.++ +|||+||.+++..... .....+++|+++.
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~ 155 (348)
T 1oc2_A 77 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY 155 (348)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC
T ss_pred CEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCCCC
Confidence 999999997543222345678899999999999999998887 9999999955433211 0012577887765
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSV 227 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i 227 (323)
.+. +.|+.+|.++|.+++.++.+++++++++||+.+|||+.... .....++..+..+.+.. . +...++|+
T Consensus 156 ~~~------~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 228 (348)
T 1oc2_A 156 NPS------SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-KFIPRQITNILAGIKPKLYGEGKNVRDWI 228 (348)
T ss_dssp CCC------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-SHHHHHHHHHHHTCCCEEETTSCCEEECE
T ss_pred CCC------CccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCcc-chHHHHHHHHHcCCCceEecCCCceEeeE
Confidence 543 77999999999999999888899999999999999986432 23334556666776554 2 33456799
Q ss_pred cHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCccccccchhH-hhhCCcc-c
Q 020608 228 HFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD-IPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-I 303 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~ 303 (323)
|++|+|++++.+++.+..++.||++ ++.+++.|+++.+.+.+|... ...+..........+.+|++|+ +.|||+| +
T Consensus 229 ~v~Dva~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 308 (348)
T 1oc2_A 229 HTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQF 308 (348)
T ss_dssp EHHHHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSC
T ss_pred EHHHHHHHHHHHhhCCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCHHHHHHHcCCCCCC
Confidence 9999999999999866555579985 578999999999999997532 1111111222234567899999 7799999 7
Q ss_pred C-HHHHHHHHHHHHHHc
Q 020608 304 P-MDQIIKDSVESLKAK 319 (323)
Q Consensus 304 ~-~~~~l~~~~~~~~~~ 319 (323)
+ ++++|+++++|++++
T Consensus 309 ~~~~~~l~~~~~~~~~~ 325 (348)
T 1oc2_A 309 TDFSEGLEETIQWYTDN 325 (348)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 7 999999999999875
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-47 Score=338.94 Aligned_cols=304 Identities=16% Similarity=0.188 Sum_probs=233.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC-CHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL-DYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~d~ 80 (323)
|+||+|||||||||||++|+++|+++ |++|++++|+....... .. ..+++++.+|++ |.+.+.++++++|+
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~------~~-~~~v~~~~~Dl~~d~~~~~~~~~~~d~ 94 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL------VK-HERMHFFEGDITINKEWVEYHVKKCDV 94 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG------GG-STTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh------cc-CCCeEEEeCccCCCHHHHHHHhccCCE
Confidence 56899999999999999999999998 99999999986443211 10 247999999999 99999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhh-ccCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC-RQNE 159 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~ 159 (323)
|||+|+.........++...+++|+.++.+++++|++.+ ++|||+||.++ |+... ..+++|+++..+..+ ..+.
T Consensus 95 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~v-yg~~~---~~~~~e~~~~~~~~p~~~p~ 169 (372)
T 3slg_A 95 ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEV-YGMCA---DEQFDPDASALTYGPINKPR 169 (372)
T ss_dssp EEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGG-GBSCC---CSSBCTTTCCEEECCTTCTT
T ss_pred EEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHH-hCCCC---CCCCCccccccccCCCCCCC
Confidence 999999765433345667889999999999999999988 99999999854 54433 557777775421111 1233
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC-------CchhHHHHHHHHcCCCCC-c--cCcCCCcccH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-------LNASMLMLLRLLQGCTDT-Y--ENFFMGSVHF 229 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v 229 (323)
+.|+.+|.++|.+++.++.+ +++++++||+++|||+.... ......++..+..|.+.. . ++..++|+|+
T Consensus 170 ~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v 248 (372)
T 3slg_A 170 WIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYV 248 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEH
T ss_pred CcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEH
Confidence 57999999999999999877 99999999999999986531 223445667777887655 3 3456679999
Q ss_pred HHHHHHHHHhhcCCC---CCccEEEEc--CccCHHHHHHHHHHHCCCCCC----CCCC-----------CCCCCCCcccc
Q 020608 230 KDVALAHILVYENPS---ACGRHLCVE--AISHYGDFVAKVAELYPEYDI----PRLP-----------KDTQPGLLRTK 289 (323)
Q Consensus 230 ~D~a~~~~~~~~~~~---~~~~~~~~~--~~~~~~e~~~~i~~~~~~~~~----~~~~-----------~~~~~~~~~~~ 289 (323)
+|+|++++.+++++. .++.||+++ +.+|+.|+++.+.+.+|.... +... ...........
T Consensus 249 ~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (372)
T 3slg_A 249 DDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRV 328 (372)
T ss_dssp HHHHHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-------------CCCC
T ss_pred HHHHHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCCccccceee
Confidence 999999999999864 456699865 589999999999998853210 0000 00001334568
Q ss_pred ccchhH-hhhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 290 DGAKKL-MDLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 290 ~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
+|++|+ +.|||+| ++++++|+++++|++++
T Consensus 329 ~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 360 (372)
T 3slg_A 329 PKIENTMQELGWAPQFTFDDALRQIFEAYRGH 360 (372)
T ss_dssp BCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 899999 7799999 89999999999999765
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=324.84 Aligned_cols=297 Identities=18% Similarity=0.176 Sum_probs=228.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
||+|||||||||||++|+++|+++|++|++++|+..... +.+ ..+++++.+|++|.+.+.++++ ++|+||
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~d~vi 72 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE-----DAI---TEGAKFYNGDLRDKAFLRDVFTQENIEAVM 72 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG-----GGS---CTTSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch-----hhc---CCCcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence 579999999999999999999999999999998754321 112 1268899999999999999998 899999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+|+......+..++...+++|+.++.+++++|++.++++|||+||.++ |+... ..+++|+++..+. +.|
T Consensus 73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~-~~~~~---~~~~~E~~~~~~~------~~Y 142 (330)
T 2c20_A 73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAAT-YGEVD---VDLITEETMTNPT------NTY 142 (330)
T ss_dssp ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGG-GCSCS---SSSBCTTSCCCCS------SHH
T ss_pred ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCcee-eCCCC---CCCCCcCCCCCCC------ChH
Confidence 9999754322234567889999999999999999999999999999855 44332 5678998876554 779
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC-------CchhHHHHHHHHcCC--CCC---------ccCcCC
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-------LNASMLMLLRLLQGC--TDT---------YENFFM 224 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~--~~~---------~~~~~~ 224 (323)
+.+|.++|.+++.++.+++++++++||+++|||+.... .......+.+...+. +.. .++..+
T Consensus 143 ~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 222 (330)
T 2c20_A 143 GETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIR 222 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEE
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeE
Confidence 99999999999999888899999999999999963210 112222233333332 221 233456
Q ss_pred CcccHHHHHHHHHHhhcCCC---CCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCccccccchhH-hhh
Q 020608 225 GSVHFKDVALAHILVYENPS---ACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRL-PKDTQPGLLRTKDGAKKL-MDL 298 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~---~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l 298 (323)
+|+|++|+|++++.+++++. .++.||++ ++.+|+.|+++.+.+.+|.. ++.. .+..........+|++|+ +.|
T Consensus 223 ~~v~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~~l 301 (330)
T 2c20_A 223 DYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHE-IPAEVAPRRAGDPARLVASSQKAKEKL 301 (330)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSC-CCEEEECCCSSCCSEECBCCHHHHHHH
T ss_pred eeEeHHHHHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCC-CceeeCCCCCCcccccccCHHHHHHHh
Confidence 79999999999999987542 24579975 67899999999999999742 2211 111122334678999999 789
Q ss_pred CCcc-c-CHHHHHHHHHHHHHHcC
Q 020608 299 GLQF-I-PMDQIIKDSVESLKAKG 320 (323)
Q Consensus 299 G~~~-~-~~~~~l~~~~~~~~~~~ 320 (323)
||+| + +++++|+++++|++++.
T Consensus 302 G~~p~~~~l~~~l~~~~~~~~~~~ 325 (330)
T 2c20_A 302 GWDPRYVNVKTIIEHAWNWHQKQP 325 (330)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCccCCHHHHHHHHHHHHHHhh
Confidence 9999 6 99999999999999874
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=330.09 Aligned_cols=291 Identities=20% Similarity=0.185 Sum_probs=231.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+|||||||||||++|+++|+++|++|++++|++.. .+++++.+|++|.+.+.++++++|+||
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~d~~~~~~~~~~~d~vi 82 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLEDGQALSDAIMGVSAVL 82 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTTCHHHHHHHHTTCSEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcCCHHHHHHHHhCCCEEE
Confidence 457899999999999999999999999999999998643 267889999999999999999999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+|+.... ....+...+++|+.++.+++++|++.++++|||+||.++|..... ...+++|+++..+. +.|
T Consensus 83 h~A~~~~~--~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~--~~~~~~E~~~~~~~------~~Y 152 (347)
T 4id9_A 83 HLGAFMSW--APADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRP--EFLPVTEDHPLCPN------SPY 152 (347)
T ss_dssp ECCCCCCS--SGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSC--SSSSBCTTSCCCCC------SHH
T ss_pred ECCcccCc--chhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCC--CCCCcCCCCCCCCC------ChH
Confidence 99997543 223447899999999999999999999999999999955443211 15678998876654 779
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCcc-------------CCCCCCC----------CchhHHHHHHHHcCCCCC-
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVM-------------GPVIPPT----------LNASMLMLLRLLQGCTDT- 218 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~-------------G~~~~~~----------~~~~~~~~~~~~~g~~~~- 218 (323)
+.+|.++|.+++.++++++++++++||+.+| ||+.... ......++..+..|.+..
T Consensus 153 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (347)
T 4id9_A 153 GLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHI 232 (347)
T ss_dssp HHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEE
Confidence 9999999999999998899999999999999 7753321 223334555666676644
Q ss_pred c--cCcCCCc----ccHHHHHHHHHHhhcCC-CCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccc
Q 020608 219 Y--ENFFMGS----VHFKDVALAHILVYENP-SACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKD 290 (323)
Q Consensus 219 ~--~~~~~~~----i~v~D~a~~~~~~~~~~-~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (323)
. +...++| +|++|+|++++.+++++ ..++.||++ ++.+|+.|+++.+.+.+|... +.... +.......+
T Consensus 233 ~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~-~~~~~--p~~~~~~~~ 309 (347)
T 4id9_A 233 LARNENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLPI-VTVDF--PGDGVYYHT 309 (347)
T ss_dssp EEECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCE-EEEEC--SSCCCBCCB
T ss_pred eCCCCcccCCccCcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCCC-ceeeC--CCccccccc
Confidence 3 3456678 99999999999999987 345679985 678999999999999987531 11111 111226789
Q ss_pred cchhH-hhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 291 GAKKL-MDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 291 ~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
|++|+ +.|||+| ++++++|+++++|++++.
T Consensus 310 d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 341 (347)
T 4id9_A 310 SNERIRNTLGFEAEWTMDRMLEEAATARRQRL 341 (347)
T ss_dssp CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999 7799999 899999999999998764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=330.53 Aligned_cols=305 Identities=18% Similarity=0.097 Sum_probs=232.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 80 (323)
+++|+|||||||||||++|+++|+++|++|++++|++........ .+. ...+++++.+|++|.+++.+++++ +|+
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 83 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFE--TAR-VADGMQSEIGDIRDQNKLLESIREFQPEI 83 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHH--HTT-TTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhH--hhc-cCCceEEEEccccCHHHHHHHHHhcCCCE
Confidence 357899999999999999999999999999999997654322111 111 134789999999999999999886 899
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
|||+|+......+..++...+++|+.++.+++++|++.+ +++|||+||.++| +.... ..+++|+++..+.
T Consensus 84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vy-g~~~~--~~~~~E~~~~~~~------ 154 (357)
T 1rkx_A 84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCY-DNKEW--IWGYRENEAMGGY------ 154 (357)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGB-CCCCS--SSCBCTTSCBCCS------
T ss_pred EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHh-CCCCc--CCCCCCCCCCCCC------
Confidence 999999643222344567889999999999999998876 8899999999554 43321 2467777665443
Q ss_pred CchHHHHHHHHHHHHHHHHhC---------CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc--cCcCCCccc
Q 020608 160 IWYPLSKTLAEKAAWEFAKEK---------GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY--ENFFMGSVH 228 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~---------~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~i~ 228 (323)
+.|+.+|.++|.+++.++.++ |++++++||+.+|||+..........++..+..|.+... +...++|+|
T Consensus 155 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ 234 (357)
T 1rkx_A 155 DPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQH 234 (357)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEE
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEECCCCCeeccEe
Confidence 679999999999999988764 899999999999999864333344556667777776543 445667999
Q ss_pred HHHHHHHHHHhhcC-----CCCCccEEEE---cCccCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCccccccchhH-hhh
Q 020608 229 FKDVALAHILVYEN-----PSACGRHLCV---EAISHYGDFVAKVAELYPEY-DIPRLPKDTQPGLLRTKDGAKKL-MDL 298 (323)
Q Consensus 229 v~D~a~~~~~~~~~-----~~~~~~~~~~---~~~~~~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l 298 (323)
++|+|++++.++++ ...++.||++ ++.+|+.|+++.+.+.+|.. .+...............+|++|+ +.|
T Consensus 235 v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 314 (357)
T 1rkx_A 235 VLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQL 314 (357)
T ss_dssp THHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHHHHHHh
Confidence 99999999998874 1345679986 35799999999999998642 11111111112334578999999 779
Q ss_pred CCcc-cCHHHHHHHHHHHHHHc
Q 020608 299 GLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 299 G~~~-~~~~~~l~~~~~~~~~~ 319 (323)
||+| ++++++|+++++|++++
T Consensus 315 G~~p~~~l~e~l~~~~~~~~~~ 336 (357)
T 1rkx_A 315 GWHPRWNLNTTLEYIVGWHKNW 336 (357)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCcHHHHHHHHHHHHHHH
Confidence 9999 89999999999999875
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-46 Score=324.14 Aligned_cols=294 Identities=16% Similarity=0.146 Sum_probs=229.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~V 81 (323)
++|+|||||||||||++|+++|+++|++|++++|+... .. + +++++.+|++|.+++.+++++ +|+|
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~------l-----~~~~~~~Dl~d~~~~~~~~~~~~~d~v 78 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL------P-----NVEMISLDIMDSQRVKKVISDIKPDYI 78 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC------T-----TEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc------c-----eeeEEECCCCCHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999999999997643 11 1 678899999999999999885 9999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccccCCC-CCCCCccccCCCCCChhhhccCC
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSITPSP-KWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
||+|+........+++...+++|+.++.+++++|++. ++++|||+||.+++.... . ..+++|+++..+.
T Consensus 79 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~---~~~~~E~~~~~~~------ 149 (321)
T 2pk3_A 79 FHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPE---ESPVSEENQLRPM------ 149 (321)
T ss_dssp EECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGG---GCSBCTTSCCBCC------
T ss_pred EEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCC---CCCCCCCCCCCCC------
Confidence 9999976543345577889999999999999999775 588999999995554321 1 5578888876554
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHc---C--CCCC-cc--CcCCCcccHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQ---G--CTDT-YE--NFFMGSVHFKD 231 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~---g--~~~~-~~--~~~~~~i~v~D 231 (323)
+.|+.+|.++|.+++.++.++|++++++||+++|||+.... .....++..+.. | .+.. .+ ...++|+|++|
T Consensus 150 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~D 228 (321)
T 2pk3_A 150 SPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG-FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRD 228 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT-SHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHH
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC-chHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHH
Confidence 77999999999999999888899999999999999986542 222334444444 6 3332 33 34566999999
Q ss_pred HHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC-CCCCCC-CCCCCCccccccchhH-hhhCCcc-cCHH
Q 020608 232 VALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD-IPRLPK-DTQPGLLRTKDGAKKL-MDLGLQF-IPMD 306 (323)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-~~lG~~~-~~~~ 306 (323)
+|++++.+++++..++.||++ ++.+++.|+++.+.+.+|... +...+. ..........+|++|+ +.|||+| ++++
T Consensus 229 va~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~ 308 (321)
T 2pk3_A 229 IVQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLE 308 (321)
T ss_dssp HHHHHHHHHHHCCTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCSCHH
T ss_pred HHHHHHHHHhCCCCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHHcCCCcCCCHH
Confidence 999999999876556679985 678999999999999997521 110110 1112234678999999 7799999 7999
Q ss_pred HHHHHHHHHHHHc
Q 020608 307 QIIKDSVESLKAK 319 (323)
Q Consensus 307 ~~l~~~~~~~~~~ 319 (323)
++|+++++|++++
T Consensus 309 e~l~~~~~~~~~~ 321 (321)
T 2pk3_A 309 KSLFEILQSYRQA 321 (321)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=332.05 Aligned_cols=300 Identities=20% Similarity=0.176 Sum_probs=228.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++||+|||||||||||++|+++|+++| ++|++++|+..... ..+. ...+++++.+|++|.+.+.++++++|+|
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-----~~l~-~~~~v~~~~~Dl~d~~~l~~~~~~~d~V 103 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK-----INVP-DHPAVRFSETSITDDALLASLQDEYDYV 103 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCG-----GGSC-CCTTEEEECSCTTCHHHHHHCCSCCSEE
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCch-----hhcc-CCCceEEEECCCCCHHHHHHHhhCCCEE
Confidence 457899999999999999999999999 99999999764321 1111 1347899999999999999999999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccccCCCCCCCCcccc--CCC---CC-Chhh
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSITPSPKWPADKVKD--EDC---WT-DEEY 154 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~--e~~---~~-~~~~ 154 (323)
||+|+......+..++...+++|+.++.+++++|++. ++++|||+||.++ |+... ..+++ |++ +. .+
T Consensus 104 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~v-yg~~~---~~~~~~~E~~~~~~~~~~-- 177 (377)
T 2q1s_A 104 FHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCS-IAEKT---FDDAKATEETDIVSLHNN-- 177 (377)
T ss_dssp EECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC------------------CCCCCCCSSCC--
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHH-cCCCC---CCCcCcccccccccccCC--
Confidence 9999975432223456789999999999999999998 8899999999854 44332 44677 776 32 22
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCC---------CCC---CchhHHHHHHHHcCCCCC-c--
Q 020608 155 CRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVI---------PPT---LNASMLMLLRLLQGCTDT-Y-- 219 (323)
Q Consensus 155 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~---------~~~---~~~~~~~~~~~~~g~~~~-~-- 219 (323)
.+.|+.+|.++|.+++.++.+++++++++||+.+|||.. ... ......++..+..+.+.. .
T Consensus 178 ----~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 253 (377)
T 2q1s_A 178 ----DSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENG 253 (377)
T ss_dssp ----CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGG
T ss_pred ----CCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCC
Confidence 367999999999999999888899999999999999976 210 223445566677777654 3
Q ss_pred cCcCCCcccHHHHHHH-HHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCc-cccccchhH-
Q 020608 220 ENFFMGSVHFKDVALA-HILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLL-RTKDGAKKL- 295 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~-~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 295 (323)
++..++|+|++|+|++ ++.+++++.. |.||++ ++.+|+.|+++.+.+.+|........+....... ...+|++|+
T Consensus 254 g~~~~~~i~v~Dva~a~i~~~~~~~~~-g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d~~k~~ 332 (377)
T 2q1s_A 254 GVATRDFIFVEDVANGLIACAADGTPG-GVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKAR 332 (377)
T ss_dssp GCCEECCEEHHHHHHHHHHHHHHCCTT-EEEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCCCHHHH
T ss_pred CCeEEeeEEHHHHHHHHHHHHHhcCCC-CeEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccCHHHHH
Confidence 3456789999999999 9999987654 489975 5789999999999999875321111111112223 678899999
Q ss_pred hhhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 296 MDLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 296 ~~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
++|||+| ++++++|+++++|++++
T Consensus 333 ~~lG~~p~~~l~e~l~~~~~~~~~~ 357 (377)
T 2q1s_A 333 RELGFSADVSIDDGLRKTIEWTKAN 357 (377)
T ss_dssp HHHCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHh
Confidence 7899999 89999999999999875
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=323.38 Aligned_cols=301 Identities=17% Similarity=0.165 Sum_probs=227.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+|||||||||||++|+++|+++|++|++++|++.+... +. ..+++++.+|++|.+++.++++++|+|||
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------l~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 83 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR------LA--YLEPECRVAEMLDHAGLERALRGLDGVIF 83 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG------GG--GGCCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh------hc--cCCeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 34699999999999999999999999999999998654321 11 12688999999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+|+... ....++...+++|+.++.+++++|++.++++|||+||.+++...... ..+ +|+++..|... ..+.|+
T Consensus 84 ~a~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~--~~~-~E~~~~~p~~~--~~~~Y~ 156 (342)
T 2x4g_A 84 SAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQG--LPG-HEGLFYDSLPS--GKSSYV 156 (342)
T ss_dssp C--------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTS--SCB-CTTCCCSSCCT--TSCHHH
T ss_pred CCccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCC--CCC-CCCCCCCcccc--ccChHH
Confidence 999643 23456778999999999999999999888999999999665433210 134 88887665100 136799
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCC-CCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVI-PPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.+|.++|.+++.++.+ |++++++||+.+|||.. ... ...++..+..|.+...+++.++|+|++|+|++++.++++
T Consensus 157 ~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~ 232 (342)
T 2x4g_A 157 LCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT---TGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALER 232 (342)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS---TTHHHHHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc---HHHHHHHHHcCCCccccCCCcceeeHHHHHHHHHHHHhC
Confidence 9999999999998876 99999999999999976 321 223455666676544466677899999999999999987
Q ss_pred CCCCccEEEEcCccCHHHHHHHHHHHCCCCC---CCCCC---------------C-------C-CCCCCccccccchhH-
Q 020608 243 PSACGRHLCVEAISHYGDFVAKVAELYPEYD---IPRLP---------------K-------D-TQPGLLRTKDGAKKL- 295 (323)
Q Consensus 243 ~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~---~~~~~---------------~-------~-~~~~~~~~~~~~~~~- 295 (323)
+..++.||+++..+|+.|+++.+.+.+|... +|.+. . . .........+|++|+
T Consensus 233 ~~~g~~~~v~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 312 (342)
T 2x4g_A 233 GRIGERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAR 312 (342)
T ss_dssp SCTTCEEEECCEEEEHHHHHHHHHHHHTCCCCEEECHHHHHHHHHHHHC----------------CCTTCCCCBCCHHHH
T ss_pred CCCCceEEEcCCcccHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhcCcccChHHHH
Confidence 6665679986433999999999999886431 11110 0 0 000123567899999
Q ss_pred hhhCC-cccCHHHHHHHHHHHHHHcCCCC
Q 020608 296 MDLGL-QFIPMDQIIKDSVESLKAKGFIS 323 (323)
Q Consensus 296 ~~lG~-~~~~~~~~l~~~~~~~~~~~~~~ 323 (323)
+.||| +|++++++|+++++|++++++++
T Consensus 313 ~~lG~~~p~~~~~~l~~~~~~~~~~g~~~ 341 (342)
T 2x4g_A 313 EELGFFSTTALDDTLLRAIDWFRDNGYFN 341 (342)
T ss_dssp HHHCCCCCSCHHHHHHHHHHHHHHTTCCC
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 77999 99999999999999999999875
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-46 Score=322.88 Aligned_cols=295 Identities=24% Similarity=0.248 Sum_probs=228.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
|+|||||||||||++++++|+++|++|++++|...... ..+ ..+++++.+|++|.+++.++++ ++|+|||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~-----~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~ 72 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKR-----ENV---PKGVPFFRVDLRDKEGVERAFREFRPTHVSH 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCG-----GGS---CTTCCEECCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCch-----hhc---ccCeEEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence 48999999999999999999999999999988542211 111 1357788999999999999988 8999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCC-CCCCCCccccCCCCCChhhhccCCCch
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPS-PKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
+|+......+..++...+++|+.++.+++++|++.++++||++||.+.+|+. .. ..+++|+++..|. +.|
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~---~~~~~E~~~~~~~------~~Y 143 (311)
T 2p5y_A 73 QAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPE---GERAEETWPPRPK------SPY 143 (311)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCT---TCCBCTTSCCCCC------SHH
T ss_pred CccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCC---CCCcCCCCCCCCC------ChH
Confidence 9987543223345677899999999999999999888999999998445543 22 4567888765543 679
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC--chhHHHHHHHHcCCCCC-c-----cC--cCCCcccHHHH
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL--NASMLMLLRLLQGCTDT-Y-----EN--FFMGSVHFKDV 232 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~--~~~~~~~~~~~~g~~~~-~-----~~--~~~~~i~v~D~ 232 (323)
+.+|.++|.+++.++.+++++++++||+++|||+..... .....++.++..+.+.. . ++ ..++|+|++|+
T Consensus 144 ~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv 223 (311)
T 2p5y_A 144 AASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDV 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHH
Confidence 999999999999998888999999999999999865432 12334455566676543 3 33 45679999999
Q ss_pred HHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc-cCHHHHHH
Q 020608 233 ALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQIIK 310 (323)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~ 310 (323)
|++++.+++.+ ++.||++ ++.+|+.|+++.+.+.+|........+..........+|++|+++|||+| ++++++|+
T Consensus 224 a~a~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~l~ 301 (311)
T 2p5y_A 224 AEAHALALFSL--EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMAHGWRPKVGFQEGIR 301 (311)
T ss_dssp HHHHHHHHHHC--CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCHHHHTTTCCCSSCHHHHHH
T ss_pred HHHHHHHHhCC--CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHHHHHHCCCCCCCCHHHHHH
Confidence 99999998764 5679985 67899999999999998642111111111223346789999993399999 99999999
Q ss_pred HHHHHHHHc
Q 020608 311 DSVESLKAK 319 (323)
Q Consensus 311 ~~~~~~~~~ 319 (323)
++++|++++
T Consensus 302 ~~~~~~~~~ 310 (311)
T 2p5y_A 302 LTVDHFRGA 310 (311)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999999764
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=324.29 Aligned_cols=301 Identities=23% Similarity=0.213 Sum_probs=232.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHC---C---CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER---R---YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~---g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
|+|||||||||||++|+++|+++ | ++|++++|+...... ..+..+.. ..+++++.+|++|.+.+.+++.++|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~-~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d 78 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-ANLAPVDA-DPRLRFVHGDIRDAGLLARELRGVD 78 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-GGGGGGTT-CTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCch-hhhhhccc-CCCeEEEEcCCCCHHHHHHHhcCCC
Confidence 48999999999999999999997 8 999999986521111 11122211 3478999999999999999999999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
+|||+|+......+..++...+++|+.++.+++++|++.++++|||+||.+++ +... ..+++|+++..+.
T Consensus 79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vy-g~~~---~~~~~E~~~~~~~------ 148 (337)
T 1r6d_A 79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVY-GSID---SGSWTESSPLEPN------ 148 (337)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGG-CCCS---SSCBCTTSCCCCC------
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHh-CCCC---CCCCCCCCCCCCC------
Confidence 99999997543222345677899999999999999999998999999999554 4332 4577888766553
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-cc--CcCCCcccHHHHHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YE--NFFMGSVHFKDVALAH 236 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~--~~~~~~i~v~D~a~~~ 236 (323)
+.|+.+|.++|.+++.++.+++++++++||+.+|||..... .....++..+..+.+.. .+ ...++|+|++|+|+++
T Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 227 (337)
T 1r6d_A 149 SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGI 227 (337)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCC-ChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHH
Confidence 77999999999999999888899999999999999986432 23334556666776544 23 3456799999999999
Q ss_pred HHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHH
Q 020608 237 ILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD-IPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDS 312 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~ 312 (323)
+.+++++..++.||++ ++.+|+.|+++.+.+.+|... ...+..........+.+|++|+ +.|||+| ++++++|+++
T Consensus 228 ~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~ 307 (337)
T 1r6d_A 228 ALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLART 307 (337)
T ss_dssp HHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999866555679986 567999999999999987531 1111111112223467899999 7799999 8999999999
Q ss_pred HHHHHHc
Q 020608 313 VESLKAK 319 (323)
Q Consensus 313 ~~~~~~~ 319 (323)
++|++++
T Consensus 308 ~~~~~~~ 314 (337)
T 1r6d_A 308 VRWYREN 314 (337)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9999875
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=327.19 Aligned_cols=305 Identities=13% Similarity=0.072 Sum_probs=233.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|..+||+|||||||||||++|+++|+++|++|++++|+....... ...+++++.+|++|.+++.++++++|+
T Consensus 25 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~v~~~~~Dl~d~~~~~~~~~~~d~ 96 (379)
T 2c5a_A 25 WPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE--------DMFCDEFHLVDLRVMENCLKVTEGVDH 96 (379)
T ss_dssp CTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG--------GGTCSEEEECCTTSHHHHHHHHTTCSE
T ss_pred ccccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh--------ccCCceEEECCCCCHHHHHHHhCCCCE
Confidence 345678999999999999999999999999999999976432110 023688999999999999999999999
Q ss_pred EEEcccCCccCC-CCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCC-CCCccccCCCCCChhhhccC
Q 020608 81 VFHLASPCIVDK-VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKW-PADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 81 Vih~a~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~ 158 (323)
|||+|+...... ...++...+++|+.++.+++++|++.++++|||+||.+++...... +...+++|+++.. ..+
T Consensus 97 Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~----~~~ 172 (379)
T 2c5a_A 97 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWP----AEP 172 (379)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSS----BCC
T ss_pred EEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCC----CCC
Confidence 999999753211 1456788999999999999999999999999999998554432110 0123567765211 123
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCC-CC-cc--CcCCCcccHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCT-DT-YE--NFFMGSVHFKD 231 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~-~~-~~--~~~~~~i~v~D 231 (323)
.+.|+.+|.++|.+++.++.+++++++++||+.+|||...... .....++..+..+.+ .. .+ ...++|+|++|
T Consensus 173 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D 252 (379)
T 2c5a_A 173 QDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 252 (379)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHH
Confidence 3679999999999999998888999999999999999764321 134455666666765 32 33 34677999999
Q ss_pred HHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHH
Q 020608 232 VALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQI 308 (323)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~ 308 (323)
+|++++.+++++ .++.||++ ++.+|+.|+++.+.+.+|... +..............+|++|+ +.|||+| ++++++
T Consensus 253 va~ai~~~l~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~-~~~~~p~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~ 330 (379)
T 2c5a_A 253 CVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEKKL-PIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEG 330 (379)
T ss_dssp HHHHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTCCC-CEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHH
T ss_pred HHHHHHHHhhcc-CCCeEEeCCCCccCHHHHHHHHHHHhCCCC-ceeeCCCCCCcccccCCHHHHHHHhCCCCCCCHHHH
Confidence 999999999876 45679985 678999999999999987421 111001111234567899999 7799999 899999
Q ss_pred HHHHHHHHHHc
Q 020608 309 IKDSVESLKAK 319 (323)
Q Consensus 309 l~~~~~~~~~~ 319 (323)
|+++++|++++
T Consensus 331 l~~~~~~~~~~ 341 (379)
T 2c5a_A 331 LRITYFWIKEQ 341 (379)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999865
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=322.92 Aligned_cols=304 Identities=20% Similarity=0.168 Sum_probs=227.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc-------HHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD-------ERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
+|+|||||||||||++|+++|+++|++|++++|+... ....+.+.... +.+++++.+|++|.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc--CCceEEEECCCCCHHHHHHHHHh
Confidence 5899999999999999999999999999999986532 12222222211 2468899999999999999998
Q ss_pred -CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhh
Q 020608 77 -GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC 155 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~ 155 (323)
++|+|||+|+.........++...+++|+.++.++++++++.++++|||+||.+++ +... ..+++|+++..|.
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~-g~~~---~~~~~E~~~~~p~-- 153 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVY-GNPQ---YLPLDEAHPTGGC-- 153 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGG-CSCS---SSSBCTTSCCCCC--
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHh-CCCC---CCCcCCCCCCCCC--
Confidence 89999999997543223345678999999999999999999888999999998554 4332 5678898876541
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHh-CCccEEEEcCCCccCCCCC------CC---CchhHHHHHHHH-cCCCCC-c----
Q 020608 156 RQNEIWYPLSKTLAEKAAWEFAKE-KGLDVVVVNPGTVMGPVIP------PT---LNASMLMLLRLL-QGCTDT-Y---- 219 (323)
Q Consensus 156 ~~~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~Rp~~v~G~~~~------~~---~~~~~~~~~~~~-~g~~~~-~---- 219 (323)
.+.|+.+|.++|.+++.++.+ .+++++++||+++|||... .. ......++.... .+.+.. +
T Consensus 154 ---~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 230 (348)
T 1ek6_A 154 ---TNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDY 230 (348)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCS
T ss_pred ---CCchHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcc
Confidence 267999999999999999876 2399999999999999531 10 112222333333 333322 2
Q ss_pred ----cCcCCCcccHHHHHHHHHHhhcCC--CCC-ccEEEE-cCccCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCccccc
Q 020608 220 ----ENFFMGSVHFKDVALAHILVYENP--SAC-GRHLCV-EAISHYGDFVAKVAELYPEYDIPRL-PKDTQPGLLRTKD 290 (323)
Q Consensus 220 ----~~~~~~~i~v~D~a~~~~~~~~~~--~~~-~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~ 290 (323)
++..++|+|++|+|++++.+++++ ..+ +.||++ ++.+|+.|+++.+.+.+|.. ++.. .+..........+
T Consensus 231 ~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~ 309 (348)
T 1ek6_A 231 DTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKK-IPYKVVARREGDVAACYA 309 (348)
T ss_dssp SSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSC-CCEEEECCCTTCCSEECB
T ss_pred cCCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCC-CceeeCCCCCccchhhcc
Confidence 334567999999999999999764 233 469985 67899999999999998642 2211 1111223346789
Q ss_pred cchhH-hhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 291 GAKKL-MDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 291 ~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
|++|+ +.|||+| ++++++|+++++|++++.
T Consensus 310 d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~ 341 (348)
T 1ek6_A 310 NPSLAQEELGWTAALGLDRMCEDLWRWQKQNP 341 (348)
T ss_dssp CCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 99999 7899999 899999999999998863
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=319.30 Aligned_cols=303 Identities=17% Similarity=0.100 Sum_probs=233.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~V 81 (323)
++|+|||||||||||++|+++|+++|++|++++|+...... ..+..+. ...+++++.+|++|.+++.+++++ +|+|
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V 90 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR-WRLRELG-IEGDIQYEDGDMADACSVQRAVIKAQPQEV 90 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC-HHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccc-cchhhcc-ccCceEEEECCCCCHHHHHHHHHHcCCCEE
Confidence 57899999999999999999999999999999998653211 1111111 123688999999999999999885 7999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc-CEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV-KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
||+|+.........++...+++|+.++.+++++|++.++ ++||++||.+++.... ..+++|+++..|. +
T Consensus 91 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~----~~~~~E~~~~~p~------~ 160 (335)
T 1rpn_A 91 YNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQ----AERQDENTPFYPR------S 160 (335)
T ss_dssp EECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCS----SSSBCTTSCCCCC------S
T ss_pred EECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCC----CCCCCcccCCCCC------C
Confidence 999997544333566788999999999999999998885 8999999985544332 4578888876654 6
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCCCCC--cc--CcCCCcccHHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGCTDT--YE--NFFMGSVHFKDVAL 234 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~~--~~--~~~~~~i~v~D~a~ 234 (323)
.|+.+|.++|.+++.++.+++++++++||+++|||+...... ....++..+..|.... .+ +..++|+|++|+|+
T Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~ 240 (335)
T 1rpn_A 161 PYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVE 240 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHH
Confidence 799999999999999988889999999999999997653321 1233455556676432 33 45667999999999
Q ss_pred HHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC---CCCCCC-CCCCCCccccccchhH-hhhCCcc-cCHHH
Q 020608 235 AHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD---IPRLPK-DTQPGLLRTKDGAKKL-MDLGLQF-IPMDQ 307 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~ 307 (323)
+++.+++++. .+.||++ ++.+|+.|+++.+.+.+|... ++.... ..........+|++|+ ++|||+| +++++
T Consensus 241 a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e 319 (335)
T 1rpn_A 241 AMWLMLQQDK-ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDE 319 (335)
T ss_dssp HHHHHHHSSS-CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHH
T ss_pred HHHHHHhcCC-CCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCCCHHH
Confidence 9999998765 4679985 678999999999999987521 110000 1112234567899999 7799999 89999
Q ss_pred HHHHHHHHHHHc
Q 020608 308 IIKDSVESLKAK 319 (323)
Q Consensus 308 ~l~~~~~~~~~~ 319 (323)
+|+++++|++++
T Consensus 320 ~l~~~~~~~~~~ 331 (335)
T 1rpn_A 320 LIRMMVEADLRR 331 (335)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=322.91 Aligned_cols=308 Identities=15% Similarity=0.078 Sum_probs=225.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~Vi 82 (323)
||+|||||||||||++|+++|+++|++|++++|...+... .....+.. ..+++++.+|++|.+++.+++++ +|+||
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~l~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 78 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGAT-DNLHWLSS-LGNFEFVHGDIRNKNDVTRLITKYMPDSCF 78 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHH-HHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCch-hhhhhhcc-CCceEEEEcCCCCHHHHHHHHhccCCCEEE
Confidence 4799999999999999999999999999999985422111 11222222 23688999999999999999987 99999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCC------------CCccccCCCC
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWP------------ADKVKDEDCW 149 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~------------~~~~~~e~~~ 149 (323)
|+|+.........++...+++|+.++.+++++|++.+++ +|||+||.+++......+ ...+++|+.+
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~ 158 (347)
T 1orr_A 79 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQ 158 (347)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSC
T ss_pred ECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCC
Confidence 999975432223466789999999999999999988875 999999985544322100 0112555554
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC--chhHHHHHHHHcCC-----CCC-c--
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL--NASMLMLLRLLQGC-----TDT-Y-- 219 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~--~~~~~~~~~~~~g~-----~~~-~-- 219 (323)
..+ .+.|+.+|.++|.+++.++.++|++++++||+.+|||...... .....++.++..+. +.. .
T Consensus 159 ~~~------~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 232 (347)
T 1orr_A 159 LDF------HSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGN 232 (347)
T ss_dssp CCC------CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESS
T ss_pred CCC------CCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecC
Confidence 433 2679999999999999998888999999999999999764321 12233444444444 332 3
Q ss_pred cCcCCCcccHHHHHHHHHHhhcC-CCC-CccEEEEcC---ccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchh
Q 020608 220 ENFFMGSVHFKDVALAHILVYEN-PSA-CGRHLCVEA---ISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKK 294 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~-~~~-~~~~~~~~~---~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (323)
+++.++|+|++|+|++++.++++ ... +..||+++. ++|+.|+++.+.+.+|........+..........+|++|
T Consensus 233 g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k 312 (347)
T 1orr_A 233 GKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKK 312 (347)
T ss_dssp SCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHH
T ss_pred CcceEeeEEHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCCCCCcceeecCHHH
Confidence 34556799999999999999985 223 346998643 4899999999999987531111111122233457889999
Q ss_pred H-hhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 295 L-MDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 295 ~-~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
+ +.|||+| ++++++|+++++|++++.
T Consensus 313 ~~~~lG~~p~~~~~e~l~~~~~~~~~~~ 340 (347)
T 1orr_A 313 ITNAIDWSPKVSAKDGVQKMYDWTSSIL 340 (347)
T ss_dssp HHHHHCCCCCSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHCCCccCCHHHHHHHHHHHHHHHH
Confidence 9 7899999 899999999999998874
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=320.35 Aligned_cols=294 Identities=19% Similarity=0.095 Sum_probs=223.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CT 79 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d 79 (323)
+|+||+|||||||||||++|+++|+++|+ +.... ...++++.+|++|.+.+.+++++ +|
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~~-------------~~~~~~~~~D~~d~~~~~~~~~~~~~d 63 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGED-------------WVFVSSKDADLTDTAQTRALFEKVQPT 63 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTCE-------------EEECCTTTCCTTSHHHHHHHHHHSCCS
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC------ccccc-------------ccccCceecccCCHHHHHHHHhhcCCC
Confidence 46789999999999999999999999998 11100 01334457999999999999986 99
Q ss_pred EEEEcccCCcc-CCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 80 GVFHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 80 ~Vih~a~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
+|||+|+.... .....++...+++|+.++.+++++|++.++++|||+||.++ |+... ..+++|+++... +..+
T Consensus 64 ~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~v-yg~~~---~~~~~E~~~~~~--~~~p 137 (319)
T 4b8w_A 64 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCI-FPDKT---TYPIDETMIHNG--PPHN 137 (319)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGG-SCSSC---CSSBCGGGGGBS--CCCS
T ss_pred EEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhh-cCCCC---CCCccccccccC--CCCC
Confidence 99999998532 12456677899999999999999999999999999999954 44433 567888763210 0111
Q ss_pred CC-chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC---CchhHHHHHH----HHcCCCCC-c--cCcCCCcc
Q 020608 159 EI-WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT---LNASMLMLLR----LLQGCTDT-Y--ENFFMGSV 227 (323)
Q Consensus 159 ~~-~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~---~~~~~~~~~~----~~~g~~~~-~--~~~~~~~i 227 (323)
.+ +|+.+|.++|.+++.++++++++++++||+++|||+.... ......++.+ +..|.+.. . +...++|+
T Consensus 138 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 217 (319)
T 4b8w_A 138 SNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFI 217 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEE
T ss_pred CcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEE
Confidence 23 4999999999999999988899999999999999986532 1223334444 56677654 3 34566799
Q ss_pred cHHHHHHHHHHhhcCCCC--CccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-
Q 020608 228 HFKDVALAHILVYENPSA--CGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF- 302 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~~~--~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~- 302 (323)
|++|+|++++.+++++.. ++.||++ ++.+|+.|+++.+.+.+|........+..........+|++|+ +.|||.|
T Consensus 218 ~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~ 297 (319)
T 4b8w_A 218 YSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRF 297 (319)
T ss_dssp EHHHHHHHHHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHHHHHHCTTCCC
T ss_pred eHHHHHHHHHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHHHHHhcCCCCC
Confidence 999999999999987433 3458875 7889999999999999975321111122223334568999999 7799999
Q ss_pred cCHHHHHHHHHHHHHHcC
Q 020608 303 IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~ 320 (323)
++++++|+++++|++++.
T Consensus 298 ~~~~~~l~~~~~~~~~~~ 315 (319)
T 4b8w_A 298 TPFKQAVKETCAWFTDNY 315 (319)
T ss_dssp CCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999999875
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-46 Score=323.32 Aligned_cols=293 Identities=17% Similarity=0.175 Sum_probs=224.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 80 (323)
+|+|||||||||||++|+++|+++ |++|++++|+...... . .+++++.+|++|.+++.++++ ++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~---~-------~~~~~~~~D~~d~~~~~~~~~~~~~d~ 71 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDV---V-------NSGPFEVVNALDFNQIEHLVEVHKITD 71 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHH---H-------HSSCEEECCTTCHHHHHHHHHHTTCCE
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccc---c-------CCCceEEecCCCHHHHHHHHhhcCCCE
Confidence 478999999999999999999999 8999999998654221 1 146788999999999999998 8999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|||+|+..... ...++...+++|+.++.+++++|++.++++|||+||.+++..... ..+.+|+.+..|. +
T Consensus 72 vih~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~---~~~~~e~~~~~~~------~ 141 (312)
T 2yy7_A 72 IYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTP---KENTPQYTIMEPS------T 141 (312)
T ss_dssp EEECCCCCHHH-HHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSC---SSSBCSSCBCCCC------S
T ss_pred EEECCccCCCc-hhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCC---CCCccccCcCCCC------c
Confidence 99999875331 224567789999999999999999999999999999965544321 3467777665543 7
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHH-cCCCCC--ccCcCCCcccHHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLL-QGCTDT--YENFFMGSVHFKDVAL 234 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~-~g~~~~--~~~~~~~~i~v~D~a~ 234 (323)
.|+.+|.++|.+++.++++++++++++||+.+|||...+.. ......+.... .+.... .++..++|+|++|+|+
T Consensus 142 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 221 (312)
T 2yy7_A 142 VYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAID 221 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHH
Confidence 79999999999999998888999999999999998643322 12222333333 343222 3445677999999999
Q ss_pred HHHHhhcCCCC----CccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCC--CCCccccccchhH-hhhCCcc-cCHH
Q 020608 235 AHILVYENPSA----CGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQ--PGLLRTKDGAKKL-MDLGLQF-IPMD 306 (323)
Q Consensus 235 ~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~lG~~~-~~~~ 306 (323)
+++.+++++.. ++.||++++.+|+.|+++.+.+.+|...++....... .......+|++|+ +.|||+| ++++
T Consensus 222 a~~~~~~~~~~~~~~~~~~ni~~~~~s~~e~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~ 301 (312)
T 2yy7_A 222 ATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLE 301 (312)
T ss_dssp HHHHHHHSCGGGCCCSSCEECCSEEECHHHHHHHHHTTCTTCEEEECCCTHHHHHTTSCSSBCCHHHHHHHCCCCCCCHH
T ss_pred HHHHHHhCcccccccCceEEeCCCccCHHHHHHHHHHHCCCCceEeccCccccccccccccCCHHHHHHHcCCCCCCCHH
Confidence 99999987653 2579987788999999999999987433222111000 0112347899999 7799999 8999
Q ss_pred HHHHHHHHHHH
Q 020608 307 QIIKDSVESLK 317 (323)
Q Consensus 307 ~~l~~~~~~~~ 317 (323)
++|+++++|++
T Consensus 302 ~~l~~~~~~~k 312 (312)
T 2yy7_A 302 SMTKDMIEHLS 312 (312)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999984
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=322.04 Aligned_cols=294 Identities=17% Similarity=0.099 Sum_probs=225.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHH-HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDER-ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++|+|||||||||||++|+++|+++|++|++++|+..... ....+..+. ...+++++.+|++ ++|+|
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~----------~~d~v 73 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFL-EKPVLELEERDLS----------DVRLV 73 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEE-CSCGGGCCHHHHT----------TEEEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhc-cCCCeeEEeCccc----------cCCEE
Confidence 45899999999999999999999999999999999764110 000111110 0123445555554 78999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
||+|+.........++...++ |+.++.+++++|++.++++|||+||.+++... . ..+++|+++..|. +.
T Consensus 74 i~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~-~---~~~~~E~~~~~p~------~~ 142 (321)
T 3vps_A 74 YHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQA-D---TLPTPEDSPLSPR------SP 142 (321)
T ss_dssp EECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSC-S---SSSBCTTSCCCCC------SH
T ss_pred EECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCC-C---CCCCCCCCCCCCC------Ch
Confidence 999998654444555666778 99999999999999999999999999554433 2 5688998877654 77
Q ss_pred hHHHHHHHHHHHHHHHHhCCc-cEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHHHHHHHHH
Q 020608 162 YPLSKTLAEKAAWEFAKEKGL-DVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDVALAHI 237 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~-~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~a~~~~ 237 (323)
|+.+|..+|.+++.++.++++ +++++||+.+|||+.... .....++..+..+.+.. . ++..++|+|++|+|++++
T Consensus 143 Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~ 221 (321)
T 3vps_A 143 YAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPD-ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLV 221 (321)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTT-SHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCCC-ChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHH
Confidence 999999999999999988899 999999999999987642 33445566666666544 3 445678999999999999
Q ss_pred HhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc--cCHHHHHHHHH
Q 020608 238 LVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF--IPMDQIIKDSV 313 (323)
Q Consensus 238 ~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~--~~~~~~l~~~~ 313 (323)
.+++++..+ .||++ ++.+|+.|+++.+. .+|........+..........+|++|+ +.|||+| ++++++|++++
T Consensus 222 ~~~~~~~~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~ 299 (321)
T 3vps_A 222 ALANRPLPS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEGIRLTL 299 (321)
T ss_dssp HGGGSCCCS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHH
T ss_pred HHHhcCCCC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCCcCCHHHHHHHHH
Confidence 999987775 99985 67899999999999 8865321111112223445678999999 7799999 89999999999
Q ss_pred HHHHHcCC
Q 020608 314 ESLKAKGF 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
+|+++++.
T Consensus 300 ~~~~~~~~ 307 (321)
T 3vps_A 300 EWWQSRDL 307 (321)
T ss_dssp HHHHTSCT
T ss_pred HHHHhCCC
Confidence 99998864
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=315.26 Aligned_cols=305 Identities=16% Similarity=0.156 Sum_probs=229.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH-hHHHHHhcCCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY-DAIAAAVTGCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~d~Vih 83 (323)
|+|||||||||||++|+++|+++ |++|++++|+..+... +. ...+++++.+|++|. +.++++++++|+|||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~------~~-~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih 73 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR------FL-NHPHFHFVEGDISIHSEWIEYHVKKCDVVLP 73 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG------GT-TCTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHH------hh-cCCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence 58999999999999999999998 8999999997643211 11 124789999999984 568888899999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhh-ccCCCch
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC-RQNEIWY 162 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~Y 162 (323)
+|+.........++...+++|+.++.+++++|++.+ ++|||+||.+++ +... ..+++|+++..+..+ ..+.+.|
T Consensus 74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~-g~~~---~~~~~e~~~~~~~~~~~~~~~~Y 148 (345)
T 2bll_A 74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVY-GMCS---DKYFDEDHSNLIVGPVNKPRWIY 148 (345)
T ss_dssp CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGG-BTCC---CSSBCTTTCCCBCCCTTCGGGHH
T ss_pred cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHc-CCCC---CCCcCCcccccccCcccCccccc
Confidence 999754322234567789999999999999999988 899999998554 4332 456788775421111 1122579
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC-------CchhHHHHHHHHcCCCCC-c--cCcCCCcccHHHH
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-------LNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDV 232 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~ 232 (323)
+.+|..+|.+++.++++++++++++||+.+|||+.... ......++..+..|.+.. . +.+.++|+|++|+
T Consensus 149 ~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv 228 (345)
T 2bll_A 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDG 228 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHH
Confidence 99999999999999888899999999999999986431 122345566677777654 3 3455679999999
Q ss_pred HHHHHHhhcCCC---CCccEEEEc-C-ccCHHHHHHHHHHHCCCCC----CCCCCCC-----------CCCCCccccccc
Q 020608 233 ALAHILVYENPS---ACGRHLCVE-A-ISHYGDFVAKVAELYPEYD----IPRLPKD-----------TQPGLLRTKDGA 292 (323)
Q Consensus 233 a~~~~~~~~~~~---~~~~~~~~~-~-~~~~~e~~~~i~~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~ 292 (323)
|++++.+++++. .++.||+++ + .+|+.|+++.+.+.+|... +|..... .........+|+
T Consensus 229 a~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 308 (345)
T 2bll_A 229 IEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSI 308 (345)
T ss_dssp HHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCC
T ss_pred HHHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchhhhcccH
Confidence 999999998753 345699864 4 7999999999999875421 1211100 001223567899
Q ss_pred hhH-hhhCCcc-cCHHHHHHHHHHHHHHcCCC
Q 020608 293 KKL-MDLGLQF-IPMDQIIKDSVESLKAKGFI 322 (323)
Q Consensus 293 ~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~~~ 322 (323)
+|+ ++|||+| ++++++|+++++|++++...
T Consensus 309 ~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~ 340 (345)
T 2bll_A 309 RNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (345)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHhcCCCccccHHHHHHHHHHHHHHcCCC
Confidence 999 7899999 89999999999999987653
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=321.09 Aligned_cols=307 Identities=18% Similarity=0.157 Sum_probs=227.7
Q ss_pred CceEEEeccccHHHHHHHHHHH-HCCCEEEEEecCCCcH---------HHHH-HHhhccCC--CCC---eEEEEccCCCH
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLL-ERRYTVHATVKNLSDE---------RETA-HLKALEGA--DTR---LRLFQIDLLDY 68 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~---------~~~~-~~~~~~~~--~~~---~~~~~~Dl~~~ 68 (323)
+|+|||||||||||++|+++|+ ++|++|++++|+.... .... .+..+... ..+ ++++.+|++|.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4699999999999999999999 9999999999876432 1111 12222211 124 88999999999
Q ss_pred hHHHHHhc--C-CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCC----CCC
Q 020608 69 DAIAAAVT--G-CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKW----PAD 141 (323)
Q Consensus 69 ~~~~~~~~--~-~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~----~~~ 141 (323)
+.+.++++ + +|+|||+|+......+..++...+++|+.++.+++++|++.++++|||+||.++ |+.... +..
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v-~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAI-FGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG-TBSCCC-----CC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHH-hCCCCcccccccc
Confidence 99999887 6 999999999754322334567899999999999999999999999999999854 443210 013
Q ss_pred ccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCC-------CCchhHHHHH-----
Q 020608 142 KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPP-------TLNASMLMLL----- 209 (323)
Q Consensus 142 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~-------~~~~~~~~~~----- 209 (323)
.+++|+++..|. +.|+.+|.++|.+++.++.+++++++++||+++|||+... ........+.
T Consensus 161 ~~~~E~~~~~p~------~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~ 234 (397)
T 1gy8_A 161 EPIDINAKKSPE------SPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMS 234 (397)
T ss_dssp CCBCTTSCCBCS------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHH
T ss_pred cCcCccCCCCCC------CchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHH
Confidence 578888776543 7799999999999999988889999999999999996421 0111222222
Q ss_pred HHHcCCC------------CC-c--------cCcCCCcccHHHHHHHHHHhhcCCCC------C---ccEEEE-cCccCH
Q 020608 210 RLLQGCT------------DT-Y--------ENFFMGSVHFKDVALAHILVYENPSA------C---GRHLCV-EAISHY 258 (323)
Q Consensus 210 ~~~~g~~------------~~-~--------~~~~~~~i~v~D~a~~~~~~~~~~~~------~---~~~~~~-~~~~~~ 258 (323)
++..+.. .. + +.+.++|||++|+|++++.+++++.. . +.||++ ++.+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~ 314 (397)
T 1gy8_A 235 DIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSV 314 (397)
T ss_dssp HHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEH
T ss_pred HHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccH
Confidence 4444432 21 2 33456799999999999999875322 2 569985 678999
Q ss_pred HHHHHHHHHHCCCCCCCCC-CCCCCCCCccccccchhH-hhhCCcc-c-CHHHHHHHHHHHHHHc
Q 020608 259 GDFVAKVAELYPEYDIPRL-PKDTQPGLLRTKDGAKKL-MDLGLQF-I-PMDQIIKDSVESLKAK 319 (323)
Q Consensus 259 ~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~lG~~~-~-~~~~~l~~~~~~~~~~ 319 (323)
.|+++.+.+.+|.. ++.. .+..........+|++|+ +.|||+| + +++++|+++++|++++
T Consensus 315 ~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~ 378 (397)
T 1gy8_A 315 REVIEVARKTTGHP-IPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH 378 (397)
T ss_dssp HHHHHHHHHHHCCC-CCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC-CCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999998642 2211 111122334678999999 7899999 6 9999999999999887
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=323.04 Aligned_cols=311 Identities=19% Similarity=0.175 Sum_probs=226.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHH--------------HHHHhhcc-CCCCCeEEEEccCCCH
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERE--------------TAHLKALE-GADTRLRLFQIDLLDY 68 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~Dl~~~ 68 (323)
.|++|||||||||||++|+++|+++|++|++++|....... .+.+..+. ....+++++.+|++|.
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d~ 89 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 89 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCCH
Confidence 47899999999999999999999999999999885322110 01111100 0124788999999999
Q ss_pred hHHHHHhcC--CCEEEEcccCCccCCCCCch---hhhhhHHHHHHHHHHHHHhhCCc-CEEEEecccccccCCCCCCCCc
Q 020608 69 DAIAAAVTG--CTGVFHLASPCIVDKVEDPQ---NQLLNPAVKGTVNVLTAAKALGV-KRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 69 ~~~~~~~~~--~d~Vih~a~~~~~~~~~~~~---~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
+++.+++++ +|+|||+||.........++ ...+++|+.++.+++++|++.++ ++||++||.++ |+.. ..
T Consensus 90 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~v-yg~~----~~ 164 (404)
T 1i24_A 90 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGE-YGTP----NI 164 (404)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGG-GCCC----SS
T ss_pred HHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHH-hCCC----CC
Confidence 999999987 99999999975432222233 35789999999999999998886 59999999844 4443 23
Q ss_pred cccCCCCCChh--------hhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC--------------
Q 020608 143 VKDEDCWTDEE--------YCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-------------- 200 (323)
Q Consensus 143 ~~~e~~~~~~~--------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-------------- 200 (323)
+++|+.+.... .+..+.+.|+.+|.++|.+++.++.++|++++++||+.||||+....
T Consensus 165 ~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~ 244 (404)
T 1i24_A 165 DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDA 244 (404)
T ss_dssp CBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCST
T ss_pred CCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCcccccccccccccccc
Confidence 45664211000 01123377999999999999999888899999999999999976421
Q ss_pred --CchhHHHHHHHHcCCCCC-ccC--cCCCcccHHHHHHHHHHhhcCCCCCc---cEEEEcCccCHHHHHHHHHHH---C
Q 020608 201 --LNASMLMLLRLLQGCTDT-YEN--FFMGSVHFKDVALAHILVYENPSACG---RHLCVEAISHYGDFVAKVAEL---Y 269 (323)
Q Consensus 201 --~~~~~~~~~~~~~g~~~~-~~~--~~~~~i~v~D~a~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~i~~~---~ 269 (323)
......++..+..|.+.. .++ +.++|+|++|+|++++.+++++...| .||++++++|+.|+++.+.+. +
T Consensus 245 ~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~~~~s~~e~~~~i~~~~~~~ 324 (404)
T 1i24_A 245 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKL 324 (404)
T ss_dssp TTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 123445667777787653 343 45779999999999999998765434 699877789999999999997 5
Q ss_pred CCCCCCCC-CCC-CC-CCCccccccchhHhhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 270 PEYDIPRL-PKD-TQ-PGLLRTKDGAKKLMDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 270 ~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
|.. ++.. .+. .. .....+.+|++|+++|||+| ++++++++++++|++...
T Consensus 325 g~~-~~~~~~p~~~~~~~~~~~~~d~~k~~~LG~~p~~~~~~~l~~~~~~~~~~~ 378 (404)
T 1i24_A 325 GLD-VKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFK 378 (404)
T ss_dssp TCC-CCEEEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTG
T ss_pred CCC-ccccccCcccCccccceEecCHHHHHHcCCCcCcCHHHHHHHHHHHHHhhh
Confidence 432 1111 111 11 12234678999998899999 899999999999987653
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=314.72 Aligned_cols=272 Identities=14% Similarity=0.056 Sum_probs=215.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC-CCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG-CTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~d~V 81 (323)
|+||+||||| +||||++|+++|+++|++|+++.|+.+.. ..+++++.+|++|.+.+.+++++ +|+|
T Consensus 1 M~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~~d~v 67 (286)
T 3gpi_A 1 MSLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM------------PAGVQTLIADVTRPDTLASIVHLRPEIL 67 (286)
T ss_dssp -CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC------------CTTCCEEECCTTCGGGCTTGGGGCCSEE
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCCceEEccCCChHHHHHhhcCCCCEE
Confidence 3578999999 59999999999999999999999986431 24788999999999999999987 9999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
||+|+... .++...+++|+.++.+++++|++.++++|||+||.++ |+... ..+++|+++..|. +.
T Consensus 68 ih~a~~~~-----~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~v-yg~~~---~~~~~E~~~~~p~------~~ 132 (286)
T 3gpi_A 68 VYCVAASE-----YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGV-YGQEV---EEWLDEDTPPIAK------DF 132 (286)
T ss_dssp EECHHHHH-----HC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGG-CCCCC---SSEECTTSCCCCC------SH
T ss_pred EEeCCCCC-----CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEE-EcCCC---CCCCCCCCCCCCC------Ch
Confidence 99998632 3456688899999999999999989999999999955 44432 6688999887665 77
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC-CccCcCCCcccHHHHHHHHHHhh
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD-TYENFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~i~v~D~a~~~~~~~ 240 (323)
|+.+|.++|.+ +.+ ++++++||+.+|||+.. .++..+.. ... ..++..++|+|++|+|++++.++
T Consensus 133 Y~~sK~~~E~~-~~~-----~~~~ilR~~~v~G~~~~-------~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~~~~~~~ 198 (286)
T 3gpi_A 133 SGKRMLEAEAL-LAA-----YSSTILRFSGIYGPGRL-------RMIRQAQT-PEQWPARNAWTNRIHRDDGAAFIAYLI 198 (286)
T ss_dssp HHHHHHHHHHH-GGG-----SSEEEEEECEEEBTTBC-------HHHHHTTC-GGGSCSSBCEECEEEHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-Hhc-----CCeEEEecccccCCCch-------hHHHHHHh-cccCCCcCceeEEEEHHHHHHHHHHHH
Confidence 99999999998 542 89999999999999754 13344444 222 23455677999999999999999
Q ss_pred cC---CCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc-c-CHHHHHHHHHH
Q 020608 241 EN---PSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF-I-PMDQIIKDSVE 314 (323)
Q Consensus 241 ~~---~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~-~~~~~l~~~~~ 314 (323)
++ ...++.||++ ++.+|+.|+++.+.+.+|... +..... .......+|++|+++|||+| + +++++|+++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~--~~~~~~~~d~~k~~~lG~~p~~~~l~e~l~~~~~ 275 (286)
T 3gpi_A 199 QQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAY-PAGATP--PVQGNKKLSNARLLASGYQLIYPDYVSGYGALLA 275 (286)
T ss_dssp HHHTTSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCC-CCSCCC--CBCSSCEECCHHHHHTTCCCSSCSHHHHHHHHHH
T ss_pred hhhccCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCC-CCCCCc--ccCCCeEeeHHHHHHcCCCCcCCcHHHHHHHHHH
Confidence 87 4556679986 678999999999999997532 211111 33456789999999999999 7 79999999999
Q ss_pred HHHHc
Q 020608 315 SLKAK 319 (323)
Q Consensus 315 ~~~~~ 319 (323)
|+..+
T Consensus 276 ~~~~~ 280 (286)
T 3gpi_A 276 AMREG 280 (286)
T ss_dssp HHTC-
T ss_pred HHhcc
Confidence 98754
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=315.30 Aligned_cols=286 Identities=15% Similarity=0.106 Sum_probs=220.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 81 (323)
++|+|||||||||||++|+++|+++|++|+++.|+. .+|++|.+++.++++ ++|+|
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~----------------------~~D~~d~~~~~~~~~~~~~d~v 59 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASERIDQV 59 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc----------------------cCCccCHHHHHHHHHhcCCCEE
Confidence 568999999999999999999999999999887642 389999999999998 99999
Q ss_pred EEcccCCcc-CCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCC----CChhhhc
Q 020608 82 FHLASPCIV-DKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCW----TDEEYCR 156 (323)
Q Consensus 82 ih~a~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~----~~~~~~~ 156 (323)
||+|+.... .....++...+++|+.++.+++++|++.++++|||+||.+++. ... ..+++|+++ ..|.
T Consensus 60 ih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg-~~~---~~~~~E~~~~~~~~~p~--- 132 (321)
T 1e6u_A 60 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYP-KLA---KQPMAESELLQGTLEPT--- 132 (321)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSC-TTC---CSSBCGGGTTSSCCCGG---
T ss_pred EEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcC-CCC---CCCcCccccccCCCCCC---
Confidence 999987531 1123456778999999999999999999999999999995544 332 457788763 2221
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC---CchhHHHHHHHHc----C-CCCC---ccCcCCC
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT---LNASMLMLLRLLQ----G-CTDT---YENFFMG 225 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~---~~~~~~~~~~~~~----g-~~~~---~~~~~~~ 225 (323)
.+.|+.+|..+|.+++.++++++++++++||+.+|||+.... ......++..+.. | .+.. .++..++
T Consensus 133 --~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~ 210 (321)
T 1e6u_A 133 --NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMRE 210 (321)
T ss_dssp --GHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEEC
T ss_pred --CCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEE
Confidence 146999999999999999888899999999999999986532 1223344444433 3 3332 2445678
Q ss_pred cccHHHHHHHHHHhhcCCCC---------CccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH
Q 020608 226 SVHFKDVALAHILVYENPSA---------CGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL 295 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~~---------~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (323)
|+|++|+|++++.+++++.. ++.||++ ++.+|+.|+++.+.+.+|........+..........+|++|+
T Consensus 211 ~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~ 290 (321)
T 1e6u_A 211 FLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRL 290 (321)
T ss_dssp EEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHH
T ss_pred eEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCCCCCcccccCCHHHH
Confidence 99999999999999987654 3679985 6789999999999999874311111111122334578999999
Q ss_pred hhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 296 MDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 296 ~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
++|||+| ++++++|+++++|++++.
T Consensus 291 ~~lG~~p~~~~~~~l~~~~~~~~~~~ 316 (321)
T 1e6u_A 291 HQLGWYHEISLEAGLASTYQWFLENQ 316 (321)
T ss_dssp HHTTCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HhcCCccCCcHHHHHHHHHHHHHHHH
Confidence 3399999 899999999999998764
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=320.07 Aligned_cols=305 Identities=21% Similarity=0.182 Sum_probs=228.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
|+|||||||||||++|+++|++. |++|++++|+..... .+.+..+.. ..+++++.+|++|.+++.++++ ++|+||
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 78 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN-LESLSDISE-SNRYNFEHADICDSAEITRIFEQYQPDAVM 78 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC-GGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCc-hhhhhhhhc-CCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence 47999999999999999999998 799999998652111 111122211 3478999999999999999998 899999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC--CcC-------EEEEecccccccCCCCC------CCCccccCC
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVK-------RVVVTSSISSITPSPKW------PADKVKDED 147 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~-------~~v~~SS~~~~~~~~~~------~~~~~~~e~ 147 (323)
|+|+......+..++...+++|+.++.+++++|.+. +++ +|||+||.+++...... ....+++|+
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~ 158 (361)
T 1kew_A 79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET 158 (361)
T ss_dssp ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC
Confidence 999975432233456789999999999999999887 776 99999998554322100 000167887
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-cc--CcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YE--NFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~--~~~~ 224 (323)
++..+. +.|+.+|.++|.+++.++.+++++++++||+.+|||..... .....++..+..+.+.. ++ ...+
T Consensus 159 ~~~~~~------~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (361)
T 1kew_A 159 TAYAPS------SPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQIR 231 (361)
T ss_dssp SCCCCC------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHHHHHHHHHHHTCCEEEETTSCCEE
T ss_pred CCCCCC------CccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcc-cHHHHHHHHHHcCCCceEcCCCceeE
Confidence 765443 77999999999999999888899999999999999986432 22334556666776543 23 3456
Q ss_pred CcccHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC-C--C-----CCCCCCCCCCccccccchhH
Q 020608 225 GSVHFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD-I--P-----RLPKDTQPGLLRTKDGAKKL 295 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-~--~-----~~~~~~~~~~~~~~~~~~~~ 295 (323)
+|+|++|+|++++.+++....++.||++ ++.+|+.|+++.+.+.++... . | .+..........+.+|++|+
T Consensus 232 ~~i~v~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~k~ 311 (361)
T 1kew_A 232 DWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKI 311 (361)
T ss_dssp EEEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHH
T ss_pred eeEEHHHHHHHHHHHHhCCCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCcccceeecCHHHH
Confidence 7999999999999999866555579986 567999999999998875311 0 0 00111111223567899999
Q ss_pred -hhhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 296 -MDLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 296 -~~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
+.|||+| ++++++|+++++|++++
T Consensus 312 ~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 312 SRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp HHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 7799999 89999999999999875
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=314.20 Aligned_cols=303 Identities=17% Similarity=0.130 Sum_probs=228.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC----CCCCeEEEEccCCCHhHHHHHhcC--C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG----ADTRLRLFQIDLLDYDAIAAAVTG--C 78 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~--~ 78 (323)
||+|||||||||||++++++|+++|++|++++|+.+... ...+..+.. ...+++++.+|++|.+++.+++++ +
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFN-TERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP 79 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccc-hHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence 589999999999999999999999999999999754311 111111111 124788999999999999998885 7
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc---CEEEEecccccccCCCCCCCCccccCCCCCChhhh
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV---KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC 155 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~ 155 (323)
|+|||+|+........+++...+++|+.++.++++++++.++ ++||++||.+++ +... ..+++|+++..|.
T Consensus 80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~-g~~~---~~~~~E~~~~~~~-- 153 (372)
T 1db3_A 80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELY-GLVQ---EIPQKETTPFYPR-- 153 (372)
T ss_dssp SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGG-TTCC---SSSBCTTSCCCCC--
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhh-CCCC---CCCCCccCCCCCC--
Confidence 999999998655455667788999999999999999999887 799999998554 4332 4578888776554
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCCCC--Cc--cCcCCCcccH
Q 020608 156 RQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGCTD--TY--ENFFMGSVHF 229 (323)
Q Consensus 156 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~--~~--~~~~~~~i~v 229 (323)
+.|+.+|.++|.+++.++.+++++++++|++.+|||+...... ....++..+..|... .. +++.++|+|+
T Consensus 154 ----~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v 229 (372)
T 1db3_A 154 ----SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHA 229 (372)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEH
T ss_pred ----ChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEH
Confidence 7799999999999999998889999999999999997643321 122344555666532 23 3456779999
Q ss_pred HHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC------CCCC-----------------------CC
Q 020608 230 KDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD------IPRL-----------------------PK 279 (323)
Q Consensus 230 ~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~------~~~~-----------------------~~ 279 (323)
+|+|++++.+++++. ++.||++ ++.+|+.|+++.+.+.+|... +|.+ .+
T Consensus 230 ~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1db3_A 230 KDYVKMQWMMLQQEQ-PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDP 308 (372)
T ss_dssp HHHHHHHHHTTSSSS-CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECG
T ss_pred HHHHHHHHHHHhcCC-CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeeccc
Confidence 999999999998764 4679975 678999999999999986421 1110 00
Q ss_pred --CCCCCCccccccchhH-hhhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 280 --DTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 280 --~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
..........+|++|+ ++|||+| ++++++|+++++|++++
T Consensus 309 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 352 (372)
T 1db3_A 309 RYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEA 352 (372)
T ss_dssp GGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred cccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHh
Confidence 0111223467899999 7799999 99999999999999765
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=311.95 Aligned_cols=302 Identities=19% Similarity=0.258 Sum_probs=225.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+|||||||||||++|+++|+++|++|++++|+...... ....+. ...+++++.+|+.+.. +.++|+||
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~-~~~~~~~~~~D~~~~~-----~~~~d~vi 96 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKR--NVEHWI-GHENFELINHDVVEPL-----YIEVDQIY 96 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG--GTGGGT-TCTTEEEEECCTTSCC-----CCCCSEEE
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchh--hhhhhc-cCCceEEEeCccCChh-----hcCCCEEE
Confidence 467899999999999999999999999999999997543211 111111 1246899999998753 56899999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+|+.........++...+++|+.++.+++++|++.++ +|||+||.+++ +... ..+++|+.+.... +..+.+.|
T Consensus 97 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~-g~~~---~~~~~E~~~~~~~-~~~~~~~Y 170 (343)
T 2b69_A 97 HLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVY-GDPE---VHPQSEDYWGHVN-PIGPRACY 170 (343)
T ss_dssp ECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGG-BSCS---SSSBCTTCCCBCC-SSSTTHHH
T ss_pred ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHh-CCCC---CCCCcccccccCC-CCCCCCch
Confidence 99997543323456678899999999999999998886 99999998554 4332 4567777532211 11223679
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC-CchhHHHHHHHHcCCCCC-cc--CcCCCcccHHHHHHHHHH
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-LNASMLMLLRLLQGCTDT-YE--NFFMGSVHFKDVALAHIL 238 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-~~~~~~~~~~~~~g~~~~-~~--~~~~~~i~v~D~a~~~~~ 238 (323)
+.+|.++|.+++.++++++++++++||+.+|||+.... ......++..+..+.+.. .+ ...++|+|++|+|++++.
T Consensus 171 ~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~ 250 (343)
T 2b69_A 171 DEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVA 250 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHH
Confidence 99999999999999888899999999999999976432 223345566667777653 33 345679999999999999
Q ss_pred hhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHHHHH
Q 020608 239 VYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVES 315 (323)
Q Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~ 315 (323)
+++.+ .++.||++ ++.+|+.|+++.+.+.+|........+..........+|++|+ +.|||+| ++++++|+++++|
T Consensus 251 ~~~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~ 329 (343)
T 2b69_A 251 LMNSN-VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHY 329 (343)
T ss_dssp HHTSS-CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHH
T ss_pred HHhcC-CCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCCCCCceecCCHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99865 35679985 6789999999999999875321111111112234567899999 7899999 8999999999999
Q ss_pred HHHc
Q 020608 316 LKAK 319 (323)
Q Consensus 316 ~~~~ 319 (323)
++++
T Consensus 330 ~~~~ 333 (343)
T 2b69_A 330 FRKE 333 (343)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=310.31 Aligned_cols=291 Identities=18% Similarity=0.154 Sum_probs=223.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 80 (323)
+++|+|||||||||||++|+++|+++|++|++++|+...... ....+ .+++++.+|++|.+++.++++ ++|+
T Consensus 18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~l----~~v~~~~~Dl~d~~~~~~~~~~~~~D~ 91 (330)
T 2pzm_A 18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKRE--VLPPV----AGLSVIEGSVTDAGLLERAFDSFKPTH 91 (330)
T ss_dssp TTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGG--GSCSC----TTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchh--hhhcc----CCceEEEeeCCCHHHHHHHHhhcCCCE
Confidence 567899999999999999999999999999999996543211 01111 478899999999999999999 9999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|||+|+..... +..++. +++|+.++.+++++|.+.++++||++||.+++ +..... ..+++|++ .+ .+
T Consensus 92 vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~-~~~~~~-~~~~~E~~--~~------~~ 158 (330)
T 2pzm_A 92 VVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCY-GRPATV-PIPIDSPT--AP------FT 158 (330)
T ss_dssp EEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGG-CSCSSS-SBCTTCCC--CC------CS
T ss_pred EEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHh-CCCccC-CCCcCCCC--CC------CC
Confidence 99999976442 233343 89999999999999998888999999999554 332100 11677776 22 26
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc-CCCcccHHHHHH-HHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF-FMGSVHFKDVAL-AHIL 238 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~i~v~D~a~-~~~~ 238 (323)
.|+.+|.++|.+++.+ +++++++||+++|||+.. ......++..+..+. ..++++ ..+++|++|+|+ +++.
T Consensus 159 ~Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~Dva~~a~~~ 231 (330)
T 2pzm_A 159 SYGISKTAGEAFLMMS----DVPVVSLRLANVTGPRLA--IGPIPTFYKRLKAGQ-KCFCSDTVRDFLDMSDFLAIADLS 231 (330)
T ss_dssp HHHHHHHHHHHHHHTC----SSCEEEEEECEEECTTCC--SSHHHHHHHHHHTTC-CCCEESCEECEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCCC--CCHHHHHHHHHHcCC-EEeCCCCEecceeHHHHHHHHHHH
Confidence 6999999999998654 799999999999999852 223334455555665 333333 567999999999 9999
Q ss_pred hhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-----hhhCCcc-cCHHHHHHH
Q 020608 239 VYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-----MDLGLQF-IPMDQIIKD 311 (323)
Q Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~lG~~~-~~~~~~l~~ 311 (323)
+++++. ++.||++ ++.+++.|+++.+.+.+|...+. ..+.. .......+|++|+ ++|||+| ++++++|++
T Consensus 232 ~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~-~~~~~~~~d~~k~~~~~l~~lG~~p~~~~~~~l~~ 308 (330)
T 2pzm_A 232 LQEGRP-TGVFNVSTGEGHSIKEVFDVVLDYVGATLAE-PVPVV-APGADDVPSVVLDPSKTETEFGWKAKVDFKDTITG 308 (330)
T ss_dssp TSTTCC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCSS-CCCEE-CCCTTSCSEECBCCHHHHHHHCCCCCCCHHHHHHH
T ss_pred HhhcCC-CCEEEeCCCCCCCHHHHHHHHHHHhCCCCce-eCCCC-cchhhccCCHHHHhhchHHHcCCcccCCHHHHHHH
Confidence 998765 6679985 57899999999999998754211 11111 1334567788888 7899999 999999999
Q ss_pred HHHHHHHcCCC
Q 020608 312 SVESLKAKGFI 322 (323)
Q Consensus 312 ~~~~~~~~~~~ 322 (323)
+++|+++++++
T Consensus 309 ~~~~~~~~~~~ 319 (330)
T 2pzm_A 309 QLAWYDKYGVT 319 (330)
T ss_dssp HHHHHHHHCSC
T ss_pred HHHHHHhhCcc
Confidence 99999999876
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=314.64 Aligned_cols=304 Identities=17% Similarity=0.121 Sum_probs=230.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-----CCCCeEEEEccCCCHhHHHHHhcC--
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-----ADTRLRLFQIDLLDYDAIAAAVTG-- 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~-- 77 (323)
||+|||||||||||++|+++|+++|++|++++|+++.... ..+..+.. ...+++++.+|++|.+++.+++++
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 102 (375)
T 1t2a_A 24 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNT-GRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 102 (375)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC-TTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccch-hhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence 3789999999999999999999999999999997643100 01111110 124688999999999999998885
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc---CEEEEecccccccCCCCCCCCccccCCCCCChhh
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV---KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEY 154 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~ 154 (323)
+|+|||+|+......+..++...+++|+.++.++++++++.++ ++||++||.+++.... ..+++|+++..|.
T Consensus 103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~----~~~~~E~~~~~~~- 177 (375)
T 1t2a_A 103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ----EIPQKETTPFYPR- 177 (375)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS----SSSBCTTSCCCCC-
T ss_pred CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCC----CCCCCccCCCCCC-
Confidence 6999999997543222345677899999999999999999887 7999999995554332 4578888776553
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCCCC--Cc--cCcCCCccc
Q 020608 155 CRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGCTD--TY--ENFFMGSVH 228 (323)
Q Consensus 155 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~--~~--~~~~~~~i~ 228 (323)
+.|+.+|.++|.+++.++.+++++++++||+.+|||+...... ....++.++..|... .. ++..++|+|
T Consensus 178 -----~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~ 252 (375)
T 1t2a_A 178 -----SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGH 252 (375)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEE
T ss_pred -----ChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEE
Confidence 6799999999999999988889999999999999997543321 122344555566533 23 345677999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC------CCCC-------------CC--CCCCCCc
Q 020608 229 FKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD------IPRL-------------PK--DTQPGLL 286 (323)
Q Consensus 229 v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~------~~~~-------------~~--~~~~~~~ 286 (323)
++|+|++++.+++++. .+.||++ ++.+|+.|+++.+.+.+|... +|.+ .. .......
T Consensus 253 v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (375)
T 1t2a_A 253 AKDYVEAMWLMLQNDE-PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVD 331 (375)
T ss_dssp HHHHHHHHHHHHHSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCC
T ss_pred HHHHHHHHHHHHhcCC-CceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCcccch
Confidence 9999999999998765 4679975 678999999999999997531 1111 00 0112223
Q ss_pred cccccchhH-hhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 287 RTKDGAKKL-MDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 287 ~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
...+|++|+ ++|||+| ++++++|+++++|++++.
T Consensus 332 ~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 367 (375)
T 1t2a_A 332 FLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELM 367 (375)
T ss_dssp BCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhh
Confidence 467899999 7899999 899999999999998753
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=310.03 Aligned_cols=304 Identities=16% Similarity=0.134 Sum_probs=231.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 80 (323)
|++|+|||||||||||++|+++|+++|++|++++|+.+.... ..+..+.. ..+++++.+|++|.+++.+++++ +|+
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 78 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS-WRLKELGI-ENDVKIIHMDLLEFSNIIRTIEKVQPDE 78 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT-HHHHHTTC-TTTEEECCCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc-ccHhhccc-cCceeEEECCCCCHHHHHHHHHhcCCCE
Confidence 357899999999999999999999999999999998754221 22222211 24688999999999999998885 699
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc-CEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV-KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
|||+|+......+.+++...+++|+.++.+++++|++.++ ++||++||.++| +... ..+++|+.+..+.
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vy-g~~~---~~~~~e~~~~~~~------ 148 (345)
T 2z1m_A 79 VYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMF-GKVQ---EIPQTEKTPFYPR------ 148 (345)
T ss_dssp EEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGG-CSCS---SSSBCTTSCCCCC------
T ss_pred EEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhc-CCCC---CCCCCccCCCCCC------
Confidence 9999997644334567788999999999999999988876 899999999554 4332 4567888766553
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCch--hHHHHHHHHcCCCCC--cc--CcCCCcccHHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNA--SMLMLLRLLQGCTDT--YE--NFFMGSVHFKDVA 233 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~--~~~~~~~~~~g~~~~--~~--~~~~~~i~v~D~a 233 (323)
+.|+.+|.++|.+++.++.+++++++++|++++|||+....... ....+.++..|.... .+ ...++|+|++|+|
T Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva 228 (345)
T 2z1m_A 149 SPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYV 228 (345)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHH
Confidence 67999999999999999888899999999999999986432211 122344445564322 33 3456799999999
Q ss_pred HHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC------CCCC-------------CC--CCCCCCcccccc
Q 020608 234 LAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD------IPRL-------------PK--DTQPGLLRTKDG 291 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~------~~~~-------------~~--~~~~~~~~~~~~ 291 (323)
++++.+++++. .+.||++ ++.+++.|+++.+.+.+|... +|.+ .. ..........+|
T Consensus 229 ~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 307 (345)
T 2z1m_A 229 EAMWLMMQQPE-PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGN 307 (345)
T ss_dssp HHHHHHHTSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBC
T ss_pred HHHHHHHhCCC-CceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceeecC
Confidence 99999998765 4679975 678999999999999997531 1110 00 011122345779
Q ss_pred chhH-hhhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 292 AKKL-MDLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 292 ~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
++|+ ++|||+| ++++++|+++++|++++
T Consensus 308 ~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~ 337 (345)
T 2z1m_A 308 PEKAMKKLGWKPRTTFDELVEIMMEADLKR 337 (345)
T ss_dssp CHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccCCHHHHHHHHHHHHHHH
Confidence 9999 7899999 99999999999999875
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=309.89 Aligned_cols=303 Identities=17% Similarity=0.128 Sum_probs=222.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc-HHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD-ERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
|+|||||||||||++++++|+++|++|+++.|.... ......+.... +.+++++.+|++|.+++.++++ ++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc--CCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 489999999999999999999999999999875322 12222222211 2367889999999999998887 599999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+||.........++...+++|+.++.++++++++.++++||++||.++ |+... ..+++|+.+..+ +.+.|
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~-~g~~~---~~~~~e~~~~~~-----~~~~Y 149 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATV-YGDNP---KIPYVESFPTGT-----PQSPY 149 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGG-GCSCC---SSSBCTTSCCCC-----CSSHH
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHH-hCCCC---CCCcCcccCCCC-----CCChH
Confidence 9999753322233456789999999999999998888899999999855 44332 457788776533 12679
Q ss_pred HHHHHHHHHHHHHHHHhC-CccEEEEcCCCccCCCCC------CC--CchhHHHHHHHHcC--CCCC---------ccCc
Q 020608 163 PLSKTLAEKAAWEFAKEK-GLDVVVVNPGTVMGPVIP------PT--LNASMLMLLRLLQG--CTDT---------YENF 222 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~-~~~~~~~Rp~~v~G~~~~------~~--~~~~~~~~~~~~~g--~~~~---------~~~~ 222 (323)
+.+|.++|.+++.++.++ +++++++||+++|||... .. .......+.....+ .+.. .+.+
T Consensus 150 ~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 229 (338)
T 1udb_A 150 GKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229 (338)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCce
Confidence 999999999999998776 899999999999998421 11 11122233333332 2211 1334
Q ss_pred CCCcccHHHHHHHHHHhhcCC--CCC-ccEEEE-cCccCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCccccccchhH-h
Q 020608 223 FMGSVHFKDVALAHILVYENP--SAC-GRHLCV-EAISHYGDFVAKVAELYPEYDIPRL-PKDTQPGLLRTKDGAKKL-M 296 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~--~~~-~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~ 296 (323)
.++|||++|+|++++.++++. ..+ +.||++ ++++|+.|+++.+.+.++.. ++.. .+..........+|++|+ +
T Consensus 230 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~ 308 (338)
T 1udb_A 230 VRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKP-VNYHFAPRREGDLPAYWADASKADR 308 (338)
T ss_dssp EECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSC-CCEEEECCCTTCCSBCCBCCHHHHH
T ss_pred eeeeEEHHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCC-CcceeCCCCCCchhhhhcCHHHHHH
Confidence 567999999999999988753 232 469985 67899999999999988642 2211 111122334567899999 7
Q ss_pred hhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 297 DLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 297 ~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
+|||+| ++++++|+++++|++++.
T Consensus 309 ~lG~~p~~~l~~~l~~~~~w~~~~~ 333 (338)
T 1udb_A 309 ELNWRVTRTLDEMAQDTWHWQSRHP 333 (338)
T ss_dssp HHCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HcCCCcCCCHHHHHHHHHHHHHhcc
Confidence 899999 899999999999998864
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=308.61 Aligned_cols=272 Identities=15% Similarity=0.066 Sum_probs=219.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
|+|||||||||||++++++|+++|++|++++|. .+|++|.+.+.++++ ++|+|||
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~D~~d~~~~~~~~~~~~~d~vi~ 62 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITNISQVQQVVQEIRPHIIIH 62 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-----------------------TSCTTCHHHHHHHHHHHCCSEEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-----------------------ccCCCCHHHHHHHHHhcCCCEEEE
Confidence 399999999999999999999999999999882 389999999999998 6999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+|+.........++...+++|+.++.+++++|++.++ +|||+||.+++.+.. ..+++|+++..|. +.|+
T Consensus 63 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~----~~~~~E~~~~~p~------~~Y~ 131 (287)
T 3sc6_A 63 CAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDR----PEGYDEFHNPAPI------NIYG 131 (287)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCC----SSCBCTTSCCCCC------SHHH
T ss_pred CCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCC----CCCCCCCCCCCCC------CHHH
Confidence 9998755445567888999999999999999999887 799999995544332 5688999877664 7899
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhcC
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.+|..+|.+++.++ .+++++||+.+|||+.. .....++..+..+.+.. .+++.++|+|++|+|++++.++++
T Consensus 132 ~sK~~~E~~~~~~~----~~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~ 204 (287)
T 3sc6_A 132 ASKYAGEQFVKELH----NKYFIVRTSWLYGKYGN---NFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHT 204 (287)
T ss_dssp HHHHHHHHHHHHHC----SSEEEEEECSEECSSSC---CHHHHHHHHHTTCSEEEEECSCEECCEEHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhC----CCcEEEeeeeecCCCCC---cHHHHHHHHHHcCCCeEeecCcccCceEHHHHHHHHHHHHhC
Confidence 99999999997664 47899999999999753 23334555555566554 566777899999999999999998
Q ss_pred CCCCccEEEE-cCccCHHHHHHHHHHHCCCCC----CCCCC-CCCCCCCccccccchhHhhhCCcc-cCHHHHHHHHHHH
Q 020608 243 PSACGRHLCV-EAISHYGDFVAKVAELYPEYD----IPRLP-KDTQPGLLRTKDGAKKLMDLGLQF-IPMDQIIKDSVES 315 (323)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~~~~~ 315 (323)
+. ++.||++ ++.+|+.|+++.+.+.+|... ++... ...........+|++|+++|||.| ++++++|+++++|
T Consensus 205 ~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~l~~~~~~ 283 (287)
T 3sc6_A 205 SL-YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIE 283 (287)
T ss_dssp CC-CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHHHH
T ss_pred CC-CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHHhhCCCCCccHHHHHHHHHHH
Confidence 76 7789975 678999999999999997521 11000 112233345788999999999999 9999999999999
Q ss_pred HHHc
Q 020608 316 LKAK 319 (323)
Q Consensus 316 ~~~~ 319 (323)
++++
T Consensus 284 ~~~~ 287 (287)
T 3sc6_A 284 TKSH 287 (287)
T ss_dssp TC--
T ss_pred HhcC
Confidence 8653
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-43 Score=307.99 Aligned_cols=308 Identities=27% Similarity=0.308 Sum_probs=228.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEE-EccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLF-QIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~-~~Dl~~~~~~~~~~~~~d~ 80 (323)
+++|+|||||||||||++|+++|+++|++|++++|+.+...... ..+.. ...+++++ .+|++|.+.+.++++++|+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 86 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ--KRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHH--HHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence 46789999999999999999999999999999999653222111 11110 12468888 8999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhh-CCcCEEEEecccccccCCCCCCCCccccCCCCCChhh-----
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKA-LGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEY----- 154 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~----- 154 (323)
|||+|+.... ..++...+++|+.++.+++++|++ .++++|||+||.++++.......+.+++|+++.....
T Consensus 87 vih~A~~~~~---~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 163 (342)
T 1y1p_A 87 VAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT 163 (342)
T ss_dssp EEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred EEEeCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhcc
Confidence 9999997543 246778999999999999999984 5689999999996664332111125788887522100
Q ss_pred -----hccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCC--chhHHHHHHHHcCCCCC-ccC-cC
Q 020608 155 -----CRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTL--NASMLMLLRLLQGCTDT-YEN-FF 223 (323)
Q Consensus 155 -----~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~--~~~~~~~~~~~~g~~~~-~~~-~~ 223 (323)
+..+.+.|+.+|.++|.+++.+++++ +++++++||+++|||...... .....++..+..|.+.. .++ +.
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T 1y1p_A 164 LPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPP 243 (342)
T ss_dssp SCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCS
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccCCc
Confidence 01122679999999999999998765 789999999999999765432 13445666777777654 333 45
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCcc-EEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCC-
Q 020608 224 MGSVHFKDVALAHILVYENPSACGR-HLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGL- 300 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~- 300 (323)
++|+|++|+|++++.+++++...|. +.++++.+|+.|+++.+.+.+|...++..... .......+|++|+ +.|||
T Consensus 244 ~~~v~v~Dva~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~--~~~~~~~~d~~k~~~~lg~~ 321 (342)
T 1y1p_A 244 QYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD--QGQDLSKFDTAPSLEILKSL 321 (342)
T ss_dssp EEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCC--CCCCCCEECCHHHHHHHHHT
T ss_pred CCEeEHHHHHHHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCCccCCCCCCc--cccccccCChHHHHHHHhhc
Confidence 6699999999999999987655454 55567789999999999999976433322111 1122467899999 77887
Q ss_pred --cc-cCHHHHHHHHHHHHH
Q 020608 301 --QF-IPMDQIIKDSVESLK 317 (323)
Q Consensus 301 --~~-~~~~~~l~~~~~~~~ 317 (323)
.+ ++++++|+++++|++
T Consensus 322 ~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 322 GRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp TCCSCCCHHHHHHHHHCCSC
T ss_pred ccCCcCCHHHHHHHHHHHhh
Confidence 56 899999999999874
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=312.50 Aligned_cols=293 Identities=15% Similarity=0.116 Sum_probs=224.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----C
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-----G 77 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~ 77 (323)
++|+|||||||||||++|+++|+++| ++|+++.|+..... ...+. ++. +.+|++|.+.++++++ +
T Consensus 45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----~~~~~----~~~-~~~d~~~~~~~~~~~~~~~~~~ 115 (357)
T 2x6t_A 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK----FVNLV----DLN-IADYMDKEDFLIQIMAGEEFGD 115 (357)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG----GGGTT----TSC-CSEEEEHHHHHHHHHTTCCCSS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch----hhccc----Cce-EeeecCcHHHHHHHHhhcccCC
Confidence 45899999999999999999999999 99999998764321 11111 222 6799999999999887 5
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhcc
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQ 157 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 157 (323)
+|+|||+|+.... ...++...+++|+.++.+++++|++.++ +||++||.+++ +... ..+++|+++..|.
T Consensus 116 ~d~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~-g~~~---~~~~~E~~~~~p~---- 184 (357)
T 2x6t_A 116 VEAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATY-GGRT---SDFIESREYEKPL---- 184 (357)
T ss_dssp CCEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGG-CSCS---SCCCSSGGGCCCS----
T ss_pred CCEEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHh-CCCC---CCCcCCcCCCCCC----
Confidence 9999999997543 4556788999999999999999998888 99999999554 4332 4467887765543
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC---CchhHHHHHHHHcCCCCC-ccC--c-CCCcccHH
Q 020608 158 NEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT---LNASMLMLLRLLQGCTDT-YEN--F-FMGSVHFK 230 (323)
Q Consensus 158 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~~~-~~~--~-~~~~i~v~ 230 (323)
+.|+.+|.++|.+++.++.+++++++++||+.+|||+.... ......++..+..+.+.. .++ . .++|+|++
T Consensus 185 --~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 262 (357)
T 2x6t_A 185 --NVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVG 262 (357)
T ss_dssp --SHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHH
T ss_pred --ChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHH
Confidence 77999999999999999888899999999999999976432 123344556666776553 333 4 56799999
Q ss_pred HHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCccccccchhHhhhCC-cc-cC
Q 020608 231 DVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDT---QPGLLRTKDGAKKLMDLGL-QF-IP 304 (323)
Q Consensus 231 D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lG~-~~-~~ 304 (323)
|+|++++.+++++. ++.||++ ++.+|+.|+++.+.+.+|...+....... ........+|++|+++||| .| ++
T Consensus 263 Dva~ai~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lG~~~~~~~ 341 (357)
T 2x6t_A 263 DVADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKT 341 (357)
T ss_dssp HHHHHHHHHHHHCC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGGTTSCCSBCCCCCHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHhcCC-CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCcccccccccccccCHHHHHHcCCCCCCCC
Confidence 99999999998766 6679985 67899999999999998753111111111 0112346789999977999 67 99
Q ss_pred HHHHHHHHHHHHHHc
Q 020608 305 MDQIIKDSVESLKAK 319 (323)
Q Consensus 305 ~~~~l~~~~~~~~~~ 319 (323)
++++|+++++|++++
T Consensus 342 l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 342 VAEGVTEYMAWLNRD 356 (357)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999763
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=303.53 Aligned_cols=294 Identities=20% Similarity=0.165 Sum_probs=219.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 80 (323)
++||+|||||||||||++|+++|+++|++|++++|+..... +.+.. ..+++++.+|++|.+++.+++++ +|+
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~l~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~D~ 92 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRR-----EHLKD-HPNLTFVEGSIADHALVNQLIGDLQPDA 92 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG-----GGSCC-CTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccch-----hhHhh-cCCceEEEEeCCCHHHHHHHHhccCCcE
Confidence 46899999999999999999999999999999999754321 11111 14788999999999999999987 999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC-
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE- 159 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~- 159 (323)
|||+|+..... ...++. +++|+.++.+++++|++.++++||++||.+++....... ..+++|++ . +.
T Consensus 93 vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~-~~~~~E~~--~------p~~ 160 (333)
T 2q1w_A 93 VVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQ-PVRLDHPR--N------PAN 160 (333)
T ss_dssp EEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSS-SBCTTSCC--C------CTT
T ss_pred EEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccC-CCCcCCCC--C------CCC
Confidence 99999975442 223333 899999999999999998889999999985543111000 22677775 1 22
Q ss_pred CchHHHHHHHHHHHHH-HHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc-cCcCCCcccHHHHHHHHH
Q 020608 160 IWYPLSKTLAEKAAWE-FAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY-ENFFMGSVHFKDVALAHI 237 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~-~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~i~v~D~a~~~~ 237 (323)
+.|+.+|.++|.+++. ++ +++++||+++|||+.. ......++..+..+. ... +....+++|++|+|++++
T Consensus 161 ~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~Dva~ai~ 232 (333)
T 2q1w_A 161 SSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNV--SGPLPIFFQRLSEGK-KCFVTKARRDFVFVKDLARATV 232 (333)
T ss_dssp CHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCC--SSHHHHHHHHHHTTC-CCEEEECEECEEEHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCc--CcHHHHHHHHHHcCC-eeeCCCceEeeEEHHHHHHHHH
Confidence 5699999999999876 43 8999999999999832 223334555556665 333 345567999999999999
Q ss_pred HhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCccccccchhHhhhCCcc-cCHHHHHHHH
Q 020608 238 LVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDT---QPGLLRTKDGAKKLMDLGLQF-IPMDQIIKDS 312 (323)
Q Consensus 238 ~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~~ 312 (323)
.+++++. ++.||++ ++.+++.|+++.+.+.+|...+....... ........+|++|++.+||+| ++++++|+++
T Consensus 233 ~~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~p~~~~~~~l~~~ 311 (333)
T 2q1w_A 233 RAVDGVG-HGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEFTPLKETVAAA 311 (333)
T ss_dssp HHHTTCC-CEEEECSCSCCEEHHHHHHHHHHHTTCSSCCCCEEEECCTTSCCCCCBCCHHHHHHHCCCCCCCHHHHHHHH
T ss_pred HHHhcCC-CCEEEeCCCCCccHHHHHHHHHHHhCCCCceeCCCCCcccccccccccCCHHHHHhcCCCcCCCHHHHHHHH
Confidence 9998776 6679985 67899999999999999754111111000 011145788999994449999 9999999999
Q ss_pred HHHHHHcCCCC
Q 020608 313 VESLKAKGFIS 323 (323)
Q Consensus 313 ~~~~~~~~~~~ 323 (323)
++|+++++.++
T Consensus 312 ~~~~~~~~~~~ 322 (333)
T 2q1w_A 312 VAYFREYGVSG 322 (333)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHCCCC
Confidence 99999998764
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=305.66 Aligned_cols=290 Identities=16% Similarity=0.122 Sum_probs=212.5
Q ss_pred eEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC-----CCE
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG-----CTG 80 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~d~ 80 (323)
+|||||||||||++|+++|+++| ++|+++.|+..... ..... ++. +.+|++|.+.+++++++ +|+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~-------~~~-~~~d~~~~~~~~~~~~~~~~~~~d~ 71 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNLV-------DLN-IADYMDKEDFLIQIMAGEEFGDVEA 71 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG-GHHHH-------TSC-CSEEEEHHHHHHHHHTTCCCSSCCE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch-hhhcC-------cce-eccccccHHHHHHHHhccccCCCcE
Confidence 58999999999999999999999 99999998764321 11221 122 67999999999999875 999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|||+|+.... ...++...+++|+.++.+++++|++.++ +||++||.+++ +... ..+++|+++..|. +
T Consensus 72 vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~-g~~~---~~~~~E~~~~~p~------~ 138 (310)
T 1eq2_A 72 IFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATY-GGRT---SDFIESREYEKPL------N 138 (310)
T ss_dssp EEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGG-TTCC---SCBCSSGGGCCCS------S
T ss_pred EEECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHh-CCCC---CCCCCCCCCCCCC------C
Confidence 9999997543 4556788999999999999999999888 99999999554 4332 4477887765543 7
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC---CchhHHHHHHHHcCCCCC-cc--Cc-CCCcccHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT---LNASMLMLLRLLQGCTDT-YE--NF-FMGSVHFKDVA 233 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~~~-~~--~~-~~~~i~v~D~a 233 (323)
.|+.+|..+|.+++.++.++|++++++||+.+|||+.... ......++..+..+.+.. .+ .. .++|+|++|+|
T Consensus 139 ~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva 218 (310)
T 1eq2_A 139 VYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA 218 (310)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHH
Confidence 7999999999999999888899999999999999976421 123334556666776543 33 34 66899999999
Q ss_pred HHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCccccccchhHhhhCC-cc-cCHHH
Q 020608 234 LAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDT---QPGLLRTKDGAKKLMDLGL-QF-IPMDQ 307 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lG~-~~-~~~~~ 307 (323)
++++.+++++. ++.||++ ++.+|+.|+++.+.+.+|...+.....+. ........+|++|+++||| .| +++++
T Consensus 219 ~~~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~l~~ 297 (310)
T 1eq2_A 219 DVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 297 (310)
T ss_dssp HHHHHHHHHCC-CEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHHTTCCCCCCCHHH
T ss_pred HHHHHHHhcCC-CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhhhcccccccccchHHHHhcCCCCCCCCHHH
Confidence 99999998766 6679985 67899999999999988753111111111 0112346789999977999 68 99999
Q ss_pred HHHHHHHHHHHc
Q 020608 308 IIKDSVESLKAK 319 (323)
Q Consensus 308 ~l~~~~~~~~~~ 319 (323)
+|+++++|++++
T Consensus 298 ~l~~~~~~~~~~ 309 (310)
T 1eq2_A 298 GVTEYMAWLNRD 309 (310)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=307.11 Aligned_cols=293 Identities=22% Similarity=0.243 Sum_probs=223.4
Q ss_pred eEEEeccccHHHHHHHHHHHHC--CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 7 VVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
+|||||||||||++|+++|+++ |++|++++|+..... +++++.+|++|.+++.++++ ++|+||
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-------------~~~~~~~D~~d~~~~~~~~~~~~~d~vi 67 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-------------GIKFITLDVSNRDEIDRAVEKYSIDAIF 67 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-------------TCCEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-------------CceEEEecCCCHHHHHHHHhhcCCcEEE
Confidence 5899999999999999999998 899999998754311 45678999999999999998 899999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+|+.... ....++...+++|+.++.+++++|++.++++||++||.+++..... ..+.+|+.+..|. +.|
T Consensus 68 h~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~---~~~~~e~~~~~p~------~~Y 137 (317)
T 3ajr_A 68 HLAGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETP---KNKVPSITITRPR------TMF 137 (317)
T ss_dssp ECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSC---SSSBCSSSCCCCC------SHH
T ss_pred ECCcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCC---CCCccccccCCCC------chH
Confidence 99987532 1224567789999999999999999999999999999965543321 3456777665543 779
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCC-C--ccCcCCCcccHHHHHHHH
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTD-T--YENFFMGSVHFKDVALAH 236 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~-~--~~~~~~~~i~v~D~a~~~ 236 (323)
+.+|.++|.+++.++++++++++++||+.+||+...+.. ......+.+...+... . .++..++|+|++|+|+++
T Consensus 138 ~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 217 (317)
T 3ajr_A 138 GVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKAL 217 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHH
Confidence 999999999999988888999999999999997643221 1122233343443332 2 244566799999999999
Q ss_pred HHhhcCCCC----CccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCC--CCCccccccchhH-hhhCCcc-cCHHHH
Q 020608 237 ILVYENPSA----CGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQ--PGLLRTKDGAKKL-MDLGLQF-IPMDQI 308 (323)
Q Consensus 237 ~~~~~~~~~----~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~lG~~~-~~~~~~ 308 (323)
+.+++++.. ++.||++++.+|+.|+++.+.+.+|...++....... .......+|++|+ ++|||+| ++++++
T Consensus 218 ~~~l~~~~~~~~~g~~~~i~~~~~s~~e~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~ 297 (317)
T 3ajr_A 218 VDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAATWPESLDSSEASNEWGFSIEYDLDRT 297 (317)
T ss_dssp HHHHHCCGGGCSSCSCEECCSEEECHHHHHHHHHTTCCSCCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCCCCCHHHH
T ss_pred HHHHhCCccccccCceEecCCccccHHHHHHHHHHHCCccccccccccchhhccccccccCHHHHHHHcCCCCCCCHHHH
Confidence 999986542 3569988778999999999999987433222111000 0111346799999 7899999 899999
Q ss_pred HHHHHHHHHHcCCC
Q 020608 309 IKDSVESLKAKGFI 322 (323)
Q Consensus 309 l~~~~~~~~~~~~~ 322 (323)
|+++++|++++...
T Consensus 298 l~~~~~~~~~~~~~ 311 (317)
T 3ajr_A 298 IDDMIDHISEKLGI 311 (317)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhcc
Confidence 99999999887543
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=306.38 Aligned_cols=279 Identities=16% Similarity=0.049 Sum_probs=220.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~Vih 83 (323)
|+|||||||||||++|+++|+ +|++|++++|+.. ++.+|++|.+++.+++++ +|+|||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------------------~~~~D~~d~~~~~~~~~~~~~d~vih 60 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------------------EFCGDFSNPKGVAETVRKLRPDVIVN 60 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------------------SSCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------------------cccccCCCHHHHHHHHHhcCCCEEEE
Confidence 489999999999999999999 8999999998641 247999999999999986 999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+|+.........++...+++|+.++.+++++|++.++ +|||+||.+++.... ..+++|+++..|. +.|+
T Consensus 61 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~----~~~~~E~~~~~p~------~~Y~ 129 (299)
T 1n2s_A 61 AAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTG----DIPWQETDATSPL------NVYG 129 (299)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCT----TCCBCTTSCCCCS------SHHH
T ss_pred CcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCC----CCCCCCCCCCCCc------cHHH
Confidence 9997544334567788999999999999999999887 899999995544332 4578888876654 7799
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhcC
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.+|.++|.+++.++ .+++++||+.+|||+.. .....++..+..+.+.. .+++.++|+|++|+|++++.++++
T Consensus 130 ~sK~~~E~~~~~~~----~~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~ 202 (299)
T 1n2s_A 130 KTKLAGEKALQDNC----PKHLIFRTSWVYAGKGN---NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRV 202 (299)
T ss_dssp HHHHHHHHHHHHHC----SSEEEEEECSEECSSSC---CHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCeEEEeeeeecCCCcC---cHHHHHHHHHhcCCCEEeecCcccCCeeHHHHHHHHHHHHHH
Confidence 99999999997664 38999999999999754 23334555666676543 566677899999999999999986
Q ss_pred C--C--CCccEEEE-cCccCHHHHHHHHHHHCCCCC----------CCCCC-CCCCCCCccccccchhH-hhhCCcccCH
Q 020608 243 P--S--ACGRHLCV-EAISHYGDFVAKVAELYPEYD----------IPRLP-KDTQPGLLRTKDGAKKL-MDLGLQFIPM 305 (323)
Q Consensus 243 ~--~--~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~-~~lG~~~~~~ 305 (323)
+ . .++.||++ ++.+|+.|+++.+.+.+|... ++... ...........+|++|+ +.|||+|.++
T Consensus 203 ~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~ 282 (299)
T 1n2s_A 203 ALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQW 282 (299)
T ss_dssp HHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCCBH
T ss_pred hccccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCCCCH
Confidence 5 2 35679975 678999999999998875321 11100 01112234578999999 7799999889
Q ss_pred HHHHHHHHHHHHHcCCC
Q 020608 306 DQIIKDSVESLKAKGFI 322 (323)
Q Consensus 306 ~~~l~~~~~~~~~~~~~ 322 (323)
+++|+++++|++++..|
T Consensus 283 ~~~l~~~~~~~~~~~~i 299 (299)
T 1n2s_A 283 ELGVKRMLTEMFTTTTI 299 (299)
T ss_dssp HHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999987654
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=311.26 Aligned_cols=301 Identities=16% Similarity=0.098 Sum_probs=227.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC----CCC-CeEEEEccCCCHhHHHHHhcC--C
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG----ADT-RLRLFQIDLLDYDAIAAAVTG--C 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~-~~~~~~~Dl~~~~~~~~~~~~--~ 78 (323)
|+|||||||||||++|+++|+++|++|++++|+.+.... ..+..+.. ... +++++.+|++|.+++.+++++ +
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 107 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNT-QRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 107 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC-TTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccc-hhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCC
Confidence 799999999999999999999999999999997643110 00111100 012 688999999999999998885 6
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-----EEEEecccccccCCCCCCCCccccCCCCCChh
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-----RVVVTSSISSITPSPKWPADKVKDEDCWTDEE 153 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~ 153 (323)
|+|||+|+......+..++...+++|+.++.+++++|++.+++ +|||+||.+++ +... . +++|+++..+.
T Consensus 108 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vy-g~~~---~-~~~E~~~~~~~ 182 (381)
T 1n7h_A 108 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMF-GSTP---P-PQSETTPFHPR 182 (381)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGG-TTSC---S-SBCTTSCCCCC
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHh-CCCC---C-CCCCCCCCCCC
Confidence 9999999975432223456788999999999999999887665 99999998554 4332 3 78888776554
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCCCCC--cc--CcCCCcc
Q 020608 154 YCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGCTDT--YE--NFFMGSV 227 (323)
Q Consensus 154 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~~--~~--~~~~~~i 227 (323)
+.|+.+|.++|.+++.++.+++++++++|++++|||+...... ....++..+..|.... .+ +..++|+
T Consensus 183 ------~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v 256 (381)
T 1n7h_A 183 ------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWG 256 (381)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECE
T ss_pred ------CchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeE
Confidence 7799999999999999988889999999999999998643321 1123344555665332 33 4456799
Q ss_pred cHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC--CCCCCC--CCCCCCccccccchhH-hhhCCc
Q 020608 228 HFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD--IPRLPK--DTQPGLLRTKDGAKKL-MDLGLQ 301 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~-~~lG~~ 301 (323)
|++|+|++++.+++++. .+.||++ ++.+|+.|+++.+.+.+|... ...+.. ..........+|++|+ +.|||+
T Consensus 257 ~v~Dva~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 335 (381)
T 1n7h_A 257 FAGDYVEAMWLMLQQEK-PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWK 335 (381)
T ss_dssp EHHHHHHHHHHHHTSSS-CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCC
T ss_pred EHHHHHHHHHHHHhCCC-CCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHHhcCCc
Confidence 99999999999998765 4679985 678999999999999997521 000111 0112233467899999 779999
Q ss_pred c-cCHHHHHHHHHHHHHHc
Q 020608 302 F-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 302 ~-~~~~~~l~~~~~~~~~~ 319 (323)
| ++++++|+++++|+.++
T Consensus 336 p~~~l~e~l~~~~~~~~~~ 354 (381)
T 1n7h_A 336 PQVGFEKLVKMMVDEDLEL 354 (381)
T ss_dssp CCSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhh
Confidence 9 99999999999998765
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-43 Score=304.68 Aligned_cols=283 Identities=19% Similarity=0.137 Sum_probs=192.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~Vi 82 (323)
+|+|||||||||||++|+++|+++|++|++++|++.. .+ ++.+|++|.+++.+++++ +|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--------------~~--~~~~Dl~d~~~~~~~~~~~~~d~vi 65 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR--------------PK--FEQVNLLDSNAVHHIIHDFQPHVIV 65 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----------------------------------CHHHHHHHCCSEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC--------------CC--eEEecCCCHHHHHHHHHhhCCCEEE
Confidence 5899999999999999999999999999999986432 02 578999999999888874 89999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+|+......+..++...+++|+.++.++++++++.++ +|||+||.+++.+ . ..+++|+++..|. +.|
T Consensus 66 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~-~----~~~~~E~~~~~~~------~~Y 133 (315)
T 2ydy_A 66 HCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDG-T----NPPYREEDIPAPL------NLY 133 (315)
T ss_dssp ECC-------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCS-S----SCSBCTTSCCCCC------SHH
T ss_pred ECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCC-C----CCCCCCCCCCCCc------CHH
Confidence 99997654444567788999999999999999998876 9999999966544 2 5678888876554 779
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHH-cCCCCC-ccCcCCCcccHHHHHHHHHHhh
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLL-QGCTDT-YENFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~i~v~D~a~~~~~~~ 240 (323)
+.+|..+|.+++.+ +++++++||+.+|||...........++..+. .+.+.. .++...+++|++|+|++++.++
T Consensus 134 ~~sK~~~e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 209 (315)
T 2ydy_A 134 GKTKLDGEKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLA 209 (315)
T ss_dssp HHHHHHHHHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEECSSBBCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeeccCceECcEEHHHHHHHHHHHH
Confidence 99999999999765 56789999999999976521111122344444 555443 4556678999999999999998
Q ss_pred cCC----CCCccEEEE-cCccCHHHHHHHHHHHCCCCC-----CCCCCCCCCCCCccccccchhHhhhCCcc-cCHHHHH
Q 020608 241 ENP----SACGRHLCV-EAISHYGDFVAKVAELYPEYD-----IPRLPKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQII 309 (323)
Q Consensus 241 ~~~----~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l 309 (323)
++. ..++.||++ ++.+|+.|+++.+.+.+|... ++..............+|++|++.+||+| ++++++|
T Consensus 210 ~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~p~~~~~~~l 289 (315)
T 2ydy_A 210 EKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRIGI 289 (315)
T ss_dssp HHHHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHTTCCCCCCHHHHH
T ss_pred HhhccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhcCCCCCCCHHHHH
Confidence 753 456679975 678999999999999997532 11101101122345788999994459999 9999999
Q ss_pred HHHHHHHHHc
Q 020608 310 KDSVESLKAK 319 (323)
Q Consensus 310 ~~~~~~~~~~ 319 (323)
+++++|++++
T Consensus 290 ~~~~~~~~~~ 299 (315)
T 2ydy_A 290 KESLWPFLID 299 (315)
T ss_dssp HHHHGGGCC-
T ss_pred HHHHHHHccc
Confidence 9999998765
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=305.98 Aligned_cols=301 Identities=16% Similarity=0.087 Sum_probs=227.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC-------CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR-------YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
+++|+|||||||||||++|+++|+++| ++|++++|+.+.... ....+++++.+|++|.+.+.+++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~~ 83 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA--------GFSGAVDARAADLSAPGEAEKLV 83 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT--------TCCSEEEEEECCTTSTTHHHHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc--------ccCCceeEEEcCCCCHHHHHHHH
Confidence 578899999999999999999999999 899999997643211 11346889999999999999988
Q ss_pred c-CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-----cCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 76 T-GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-----VKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 76 ~-~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+ ++|+|||+|+.... ....++...+++|+.++.+++++|++.+ +++||++||.++ |+... ..+++|+++
T Consensus 84 ~~~~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~-~~~~~---~~~~~E~~~ 158 (342)
T 2hrz_A 84 EARPDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAV-FGAPL---PYPIPDEFH 158 (342)
T ss_dssp HTCCSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGG-CCSSC---CSSBCTTCC
T ss_pred hcCCCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHh-hCCCC---CCCcCCCCC
Confidence 4 89999999997532 1234567889999999999999998765 789999999955 44322 457889887
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccC-CCCCCCC--chhHHHHHHHHcCCCCCc---cCcC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMG-PVIPPTL--NASMLMLLRLLQGCTDTY---ENFF 223 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G-~~~~~~~--~~~~~~~~~~~~g~~~~~---~~~~ 223 (323)
..+. +.|+.+|.++|.+++.++.+++++.+++|++.+|| |+..... .....++.....|.+... +...
T Consensus 159 ~~~~------~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (342)
T 2hrz_A 159 TTPL------TSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIR 232 (342)
T ss_dssp CCCS------SHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCE
T ss_pred CCCc------chHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccc
Confidence 6654 67999999999999999888889999999999999 6643221 122344556666765432 2233
Q ss_pred CCcccHHHHHHHHHHhhcCCC----CCccEEEEcCccCHHHHHHHHHHHCCCCC--CCCCCCCCC----CCCccccccch
Q 020608 224 MGSVHFKDVALAHILVYENPS----ACGRHLCVEAISHYGDFVAKVAELYPEYD--IPRLPKDTQ----PGLLRTKDGAK 293 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~----~~~~~~~~~~~~~~~e~~~~i~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~ 293 (323)
..++|++|+|++++.+++.+. .++.||++++.+|+.|+++.+.+.+|... .....+... .......+|++
T Consensus 233 ~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 312 (342)
T 2hrz_A 233 HWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAK 312 (342)
T ss_dssp EEEECHHHHHHHHHHHHHSCHHHHCSCCEEECCCEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCCCBCCH
T ss_pred eeeEehHHHHHHHHHHHhccccccCCccEEEcCCCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccccccChH
Confidence 448999999999999998653 34569988778999999999999886421 111111100 01112357999
Q ss_pred hHhhhCCcc-cCHHHHHHHHHHHHHHcCCCC
Q 020608 294 KLMDLGLQF-IPMDQIIKDSVESLKAKGFIS 323 (323)
Q Consensus 294 ~~~~lG~~~-~~~~~~l~~~~~~~~~~~~~~ 323 (323)
|+++|||+| ++++++|+++++|++ .|.+|
T Consensus 313 k~~~lG~~p~~~l~e~l~~~~~~~~-~~~~~ 342 (342)
T 2hrz_A 313 RARELGFTAESSFEEIIQVHIEDEL-GGSLK 342 (342)
T ss_dssp HHHHTTCCCCSSHHHHHHHHHHHHS-TTCCC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHhc-CCCCC
Confidence 994499999 999999999999998 44443
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=326.02 Aligned_cols=311 Identities=18% Similarity=0.195 Sum_probs=226.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcH-HHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE-RETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GC 78 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 78 (323)
.+++|+|||||||||||++|+++|+++|++|++++|+.... .....+..+. ..+++++.+|++|.+++.++++ ++
T Consensus 8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~~ 85 (699)
T 1z45_A 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEYKI 85 (699)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHSCC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhcc--CCceEEEEcCCCCHHHHHHHHHhCCC
Confidence 35678999999999999999999999999999999876432 1112222221 2367889999999999999998 89
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
|+|||+|+..........+...+++|+.++.+++++|++.++++||++||.+++..........+++|+.+..+.
T Consensus 86 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p~----- 160 (699)
T 1z45_A 86 DSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPT----- 160 (699)
T ss_dssp CEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCC-----
T ss_pred CEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccCCCCCC-----
Confidence 999999997543222234567899999999999999998888999999998554322111112467777665543
Q ss_pred CCchHHHHHHHHHHHHHHHHh--CCccEEEEcCCCccCCCCCC----C----CchhHHHHHHHHcC--CCCC-c------
Q 020608 159 EIWYPLSKTLAEKAAWEFAKE--KGLDVVVVNPGTVMGPVIPP----T----LNASMLMLLRLLQG--CTDT-Y------ 219 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~Rp~~v~G~~~~~----~----~~~~~~~~~~~~~g--~~~~-~------ 219 (323)
+.|+.+|.++|.+++.++.+ .+++++++||+++|||.... . .......+.+...+ .+.. +
T Consensus 161 -~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 239 (699)
T 1z45_A 161 -NPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDS 239 (699)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------
T ss_pred -ChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccC
Confidence 67999999999999998876 69999999999999985321 0 11222334444433 2332 2
Q ss_pred --cCcCCCcccHHHHHHHHHHhhcCC------C-CCccEEE-EcCccCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCccc
Q 020608 220 --ENFFMGSVHFKDVALAHILVYENP------S-ACGRHLC-VEAISHYGDFVAKVAELYPEYDIPRL-PKDTQPGLLRT 288 (323)
Q Consensus 220 --~~~~~~~i~v~D~a~~~~~~~~~~------~-~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~ 288 (323)
+...++|||++|+|++++.+++.. . .++.||+ +++.+|+.|+++.+++.++.. ++.. .+........+
T Consensus 240 ~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~ 318 (699)
T 1z45_A 240 RDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGID-LPYKVTGRRAGDVLNL 318 (699)
T ss_dssp CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCC-CCC---------CCCC
T ss_pred CCCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCC-CCceecCCCCCccccc
Confidence 334567999999999999988642 1 2346998 477899999999999988643 2221 11111233457
Q ss_pred cccchhH-hhhCCcc-cCHHHHHHHHHHHHHHcCC
Q 020608 289 KDGAKKL-MDLGLQF-IPMDQIIKDSVESLKAKGF 321 (323)
Q Consensus 289 ~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~~ 321 (323)
.+|++|+ ++|||+| ++++++|+++++|+++++.
T Consensus 319 ~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~ 353 (699)
T 1z45_A 319 TAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPF 353 (699)
T ss_dssp CBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 8899999 7899999 9999999999999998764
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=296.82 Aligned_cols=270 Identities=16% Similarity=0.083 Sum_probs=214.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
-|+|||||||||||++|+++|+++|++|++++|+ .+|++|.+++.++++ ++|+||
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~Dl~d~~~~~~~~~~~~~d~vi 68 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNVLAVNKFFNEKKPNVVI 68 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred cceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-----------------------cCCCCCHHHHHHHHHhcCCCEEE
Confidence 4789999999999999999999999999999884 389999999999998 799999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+|+.........++...+++|+.++.+++++|++.++ +|||+||.+++.+.. ..+++|+++..+. +.|
T Consensus 69 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~----~~~~~E~~~~~~~------~~Y 137 (292)
T 1vl0_A 69 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEA----KEPITEFDEVNPQ------SAY 137 (292)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCC----SSCBCTTSCCCCC------SHH
T ss_pred ECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCC----CCCCCCCCCCCCc------cHH
Confidence 99997543223356778999999999999999998887 999999995554332 4578888876554 779
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhc
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
+.+|..+|.+++.++ .+++++||+.+||| .. .....++..+..+.+.. .++...+++|++|+|++++.+++
T Consensus 138 ~~sK~~~E~~~~~~~----~~~~~lR~~~v~G~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~ 209 (292)
T 1vl0_A 138 GKTKLEGENFVKALN----PKYYIVRTAWLYGD-GN---NFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVID 209 (292)
T ss_dssp HHHHHHHHHHHHHHC----SSEEEEEECSEESS-SS---CHHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC----CCeEEEeeeeeeCC-Cc---ChHHHHHHHHhcCCcEEeecCeeeCCccHHHHHHHHHHHHh
Confidence 999999999997653 47999999999999 22 22334445555565543 45666779999999999999998
Q ss_pred CCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC----CCCCCCC-CCCCCccccccchhH-hhhCCcccCHHHHHHHHHH
Q 020608 242 NPSACGRHLCV-EAISHYGDFVAKVAELYPEYD----IPRLPKD-TQPGLLRTKDGAKKL-MDLGLQFIPMDQIIKDSVE 314 (323)
Q Consensus 242 ~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~-~~lG~~~~~~~~~l~~~~~ 314 (323)
++ .++.||++ ++.+|+.|+++.+.+.+|... +|..... .........+|++|+ +.|||+|.+++++|+++++
T Consensus 210 ~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~l~~~~~ 288 (292)
T 1vl0_A 210 EK-NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITREWKESLKEYID 288 (292)
T ss_dssp HT-CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHHH
T ss_pred cC-CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 76 56679975 678999999999999987421 2211111 112234578999999 6799999999999999999
Q ss_pred HHH
Q 020608 315 SLK 317 (323)
Q Consensus 315 ~~~ 317 (323)
|++
T Consensus 289 ~~~ 291 (292)
T 1vl0_A 289 LLQ 291 (292)
T ss_dssp HHT
T ss_pred Hhc
Confidence 985
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=323.43 Aligned_cols=308 Identities=16% Similarity=0.174 Sum_probs=232.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhH-HHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDA-IAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~ 80 (323)
+++|+|||||||||||++|+++|+++ |++|++++|+...... +. ...+++++.+|++|.++ ++++++++|+
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~------~~-~~~~v~~v~~Dl~d~~~~~~~~~~~~D~ 385 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR------FL-NHPHFHFVEGDISIHSEWIEYHVKKCDV 385 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG------GT-TCTTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh------hc-cCCceEEEECCCCCcHHHHHHhhcCCCE
Confidence 36789999999999999999999998 8999999998643221 11 13478999999999765 7788889999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhh-ccCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC-RQNE 159 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~ 159 (323)
|||+|+.........++...+++|+.++.+++++|++.+ ++|||+||.+++.... ..+++|+++..+..+ ..+.
T Consensus 386 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~----~~~~~E~~~~~~~~p~~~p~ 460 (660)
T 1z7e_A 386 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCS----DKYFDEDHSNLIVGPVNKPR 460 (660)
T ss_dssp EEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCC----SSSBCTTTCCEEECCTTCTT
T ss_pred EEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCC----CcccCCCccccccCcccCCC
Confidence 999999754322234567789999999999999999988 8999999985554332 456788875321100 1223
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCC-------CCchhHHHHHHHHcCCCCC-c--cCcCCCcccH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPP-------TLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHF 229 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~-------~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v 229 (323)
+.|+.+|.++|.+++.+++++|++++++||+++|||+... .......++..+..|.+.. . ++..++|+|+
T Consensus 461 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 540 (660)
T 1z7e_A 461 WIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 540 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEH
Confidence 5699999999999999988889999999999999998642 1223345566677777654 2 3456679999
Q ss_pred HHHHHHHHHhhcCCC---CCccEEEEc-C-ccCHHHHHHHHHHHCCCC----CCCCCCC-----------CCCCCCcccc
Q 020608 230 KDVALAHILVYENPS---ACGRHLCVE-A-ISHYGDFVAKVAELYPEY----DIPRLPK-----------DTQPGLLRTK 289 (323)
Q Consensus 230 ~D~a~~~~~~~~~~~---~~~~~~~~~-~-~~~~~e~~~~i~~~~~~~----~~~~~~~-----------~~~~~~~~~~ 289 (323)
+|+|++++.+++++. .++.||+++ + .+|+.|+++.+.+.+|.. .+|.+.. ..........
T Consensus 541 ~Dva~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (660)
T 1z7e_A 541 RDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRK 620 (660)
T ss_dssp HHHHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCSCCC
T ss_pred HHHHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccccccchhhcc
Confidence 999999999998764 344699864 4 799999999999887532 1222110 0001233567
Q ss_pred ccchhH-hhhCCcc-cCHHHHHHHHHHHHHHcCCC
Q 020608 290 DGAKKL-MDLGLQF-IPMDQIIKDSVESLKAKGFI 322 (323)
Q Consensus 290 ~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~~~ 322 (323)
+|++|+ ++|||+| ++++++|+++++|++++..+
T Consensus 621 ~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~~ 655 (660)
T 1z7e_A 621 PSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_dssp BCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSCC
T ss_pred cCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhccc
Confidence 899999 7799999 99999999999999988754
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=288.26 Aligned_cols=265 Identities=14% Similarity=0.076 Sum_probs=202.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
.|||+|||||| ||||++|+++|+++|++|++++|++.+... +.. .+++++.+|++|.+ +.++|+||
T Consensus 3 ~m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~-----~~~~~~~~D~~d~~-----~~~~d~vi 68 (286)
T 3ius_A 3 AMTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEA---IRA-----SGAEPLLWPGEEPS-----LDGVTHLL 68 (286)
T ss_dssp --CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHH---HHH-----TTEEEEESSSSCCC-----CTTCCEEE
T ss_pred CCcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhh---Hhh-----CCCeEEEecccccc-----cCCCCEEE
Confidence 35689999998 999999999999999999999997643322 111 37899999999955 78999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhh--CCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKA--LGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|+|+..... . ..+.++++++++ .++++|||+||.+ +|+... ..+++|+++..|. +
T Consensus 69 ~~a~~~~~~----~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~~-vyg~~~---~~~~~E~~~~~p~------~ 125 (286)
T 3ius_A 69 ISTAPDSGG----D---------PVLAALGDQIAARAAQFRWVGYLSTTA-VYGDHD---GAWVDETTPLTPT------A 125 (286)
T ss_dssp ECCCCBTTB----C---------HHHHHHHHHHHHTGGGCSEEEEEEEGG-GGCCCT---TCEECTTSCCCCC------S
T ss_pred ECCCccccc----c---------HHHHHHHHHHHhhcCCceEEEEeecce-ecCCCC---CCCcCCCCCCCCC------C
Confidence 999864321 1 125688899888 6789999999995 454432 5688999887665 7
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC--ccCcCCCcccHHHHHHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT--YENFFMGSVHFKDVALAHIL 238 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~i~v~D~a~~~~~ 238 (323)
.|+.+|..+|.+++.+ .+++++++||+.+|||+... +.++..|.+.. .+.+.++|+|++|+|++++.
T Consensus 126 ~Y~~sK~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 194 (286)
T 3ius_A 126 ARGRWRVMAEQQWQAV---PNLPLHVFRLAGIYGPGRGP--------FSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAA 194 (286)
T ss_dssp HHHHHHHHHHHHHHHS---TTCCEEEEEECEEEBTTBSS--------STTSSSSCCCEEECTTCCBCEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---cCCCEEEEeccceECCCchH--------HHHHhcCCccccCCCCcccceEEHHHHHHHHHH
Confidence 8999999999999765 58999999999999997543 12334555444 23456779999999999999
Q ss_pred hhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCC-CCC-------CccccccchhH-hhhCCcc-c-CHH
Q 020608 239 VYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDT-QPG-------LLRTKDGAKKL-MDLGLQF-I-PMD 306 (323)
Q Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~-~~lG~~~-~-~~~ 306 (323)
+++++..++.||++ ++.+|+.|+++.+.+.+|....+...... ... .....+|++|+ +.|||+| + +++
T Consensus 195 ~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~ 274 (286)
T 3ius_A 195 SMARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYR 274 (286)
T ss_dssp HHHSCCTTCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHH
T ss_pred HHhCCCCCCEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCHH
Confidence 99988766689985 67899999999999999753211111111 011 14567899999 6699999 7 799
Q ss_pred HHHHHHHHH
Q 020608 307 QIIKDSVES 315 (323)
Q Consensus 307 ~~l~~~~~~ 315 (323)
++|+++++.
T Consensus 275 e~l~~~~~~ 283 (286)
T 3ius_A 275 VGLEALQAD 283 (286)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998763
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=290.00 Aligned_cols=294 Identities=18% Similarity=0.124 Sum_probs=222.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC-----CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR-----YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG-- 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 77 (323)
+|+|||||||||||++|+++|+++| ++|++++|+++... . ...+++++.+|++|.+++.+++++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-------~--~~~~~~~~~~Dl~d~~~~~~~~~~~~ 71 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-------H--EDNPINYVQCDISDPDDSQAKLSPLT 71 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-------C--CSSCCEEEECCTTSHHHHHHHHTTCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-------c--ccCceEEEEeecCCHHHHHHHHhcCC
Confidence 4799999999999999999999999 99999999865422 1 124788999999999999999998
Q ss_pred -CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEE-------EecccccccCCCCCCCCccccCC
Q 020608 78 -CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVV-------VTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 78 -~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v-------~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
+|+|||+|+.. ..++...+++|+.++.+++++|++. ++++|| |+||.++ |+... ....+++|+
T Consensus 72 ~~d~vih~a~~~-----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~v-yg~~~-~~~~~~~E~ 144 (364)
T 2v6g_A 72 DVTHVFYVTWAN-----RSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFES-YGKIE-SHDPPYTED 144 (364)
T ss_dssp TCCEEEECCCCC-----CSSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGG-TTTSC-CCCSSBCTT
T ss_pred CCCEEEECCCCC-----cchHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhh-ccccc-cCCCCCCcc
Confidence 99999999874 2457789999999999999999987 788998 7999854 44321 014578888
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhCC-ccEEEEcCCCccCCCCCCCCch-hHH-HHHHH--HcCCCCC-ccC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG-LDVVVVNPGTVMGPVIPPTLNA-SML-MLLRL--LQGCTDT-YEN 221 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~Rp~~v~G~~~~~~~~~-~~~-~~~~~--~~g~~~~-~~~ 221 (323)
++..+. .+.| ..+|.+++.++++++ ++++++||+.+|||+....... ... ++..+ ..|.+.. .++
T Consensus 145 ~~~~~~-----~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 215 (364)
T 2v6g_A 145 LPRLKY-----MNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGC 215 (364)
T ss_dssp SCCCSS-----CCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSC
T ss_pred ccCCcc-----chhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCC
Confidence 776541 2457 358888888887677 9999999999999987532221 122 23333 2566554 343
Q ss_pred -----cCCCcccHHHHHHHHHHhhcCCCCCc-cEEEE-cCccCHHHHHHHHHHHCCCCC------CCCCC----------
Q 020608 222 -----FFMGSVHFKDVALAHILVYENPSACG-RHLCV-EAISHYGDFVAKVAELYPEYD------IPRLP---------- 278 (323)
Q Consensus 222 -----~~~~~i~v~D~a~~~~~~~~~~~~~~-~~~~~-~~~~~~~e~~~~i~~~~~~~~------~~~~~---------- 278 (323)
...+++|++|+|++++.+++++...| .||++ ++.+|+.|+++.+.+.+|... +|...
T Consensus 216 ~~~~~~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~ 295 (364)
T 2v6g_A 216 KAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPV 295 (364)
T ss_dssp HHHHHSCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHH
Confidence 23568999999999999998775444 69986 567999999999999987431 12110
Q ss_pred -------CC-CCCC--C------------cc-ccccchhHhhhCCcc-cCHHHHHHHHHHHHHHcCCCC
Q 020608 279 -------KD-TQPG--L------------LR-TKDGAKKLMDLGLQF-IPMDQIIKDSVESLKAKGFIS 323 (323)
Q Consensus 279 -------~~-~~~~--~------------~~-~~~~~~~~~~lG~~~-~~~~~~l~~~~~~~~~~~~~~ 323 (323)
.. .... . .. ..+|++|+++|||+| ++++++|+++++|++++|++|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~e~l~~~~~~~~~~g~lp 364 (364)
T 2v6g_A 296 WEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 364 (364)
T ss_dssp HHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 00 0000 0 23 478999995599999 999999999999999999886
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=274.33 Aligned_cols=272 Identities=22% Similarity=0.210 Sum_probs=197.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|||||||||||||++|+++|+++||+|+++.|++... . +..| +...+.++++|+|||+|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~--------------~---~~~~----~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG--------------R---ITWD----ELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT--------------E---EEHH----HHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC--------------e---eecc----hhhHhhccCCCEEEEec
Confidence 6899999999999999999999999999999975321 1 1222 22345577999999999
Q ss_pred cCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhCCc--CEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 86 SPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKALGV--KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 86 ~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
+...... +.......++.|+.+|.+++++++..+. +.||+.||+ .+|+... ..+++|+++..+.
T Consensus 60 ~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~-~vyg~~~---~~~~~E~~p~~~~------ 129 (298)
T 4b4o_A 60 GENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGV-AYYQPSL---TAEYDEDSPGGDF------ 129 (298)
T ss_dssp CCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEG-GGSCCCS---SCCBCTTCCCSCS------
T ss_pred cCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeee-eeecCCC---CCcccccCCcccc------
Confidence 8643221 2233456788999999999999987764 468888888 5555443 6678898876654
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC--ccCcCCCcccHHHHHHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT--YENFFMGSVHFKDVALAHI 237 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~i~v~D~a~~~~ 237 (323)
+.|+..|...|.... ....+++++++||+.||||+. .....++.....|.... .+++.++|||++|+|++++
T Consensus 130 ~~~~~~~~~~e~~~~--~~~~~~~~~~~r~~~v~g~~~----~~~~~~~~~~~~~~~~~~g~g~~~~~~ihv~Dva~a~~ 203 (298)
T 4b4o_A 130 DFFSNLVTKWEAAAR--LPGDSTRQVVVRSGVVLGRGG----GAMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILT 203 (298)
T ss_dssp SHHHHHHHHHHHHHC--CSSSSSEEEEEEECEEECTTS----HHHHHHHHHHHTTCCCCBTTSCSBCCEEEHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH--hhccCCceeeeeeeeEEcCCC----CchhHHHHHHhcCCcceecccCceeecCcHHHHHHHHH
Confidence 457777777665432 235689999999999999973 22233344444455444 4566788999999999999
Q ss_pred HhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCCC---CCCCCCCCCCC-------CccccccchhHhhhCCcc--cC
Q 020608 238 LVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEYD---IPRLPKDTQPG-------LLRTKDGAKKLMDLGLQF--IP 304 (323)
Q Consensus 238 ~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~lG~~~--~~ 304 (323)
.+++++...|.||+ +++++|++|+++.+++.++... +|.+..+.... ..+..++++|++++||++ ++
T Consensus 204 ~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~~~~~~~~g~~~~~~~l~~~rv~~~kl~~~Gf~f~yp~ 283 (298)
T 4b4o_A 204 HALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAVVQAVFGRQRAIMLLEGQKVIPRRTLATGYQYSFPE 283 (298)
T ss_dssp HHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCCCCCCBCHHHHHHHHCHHHHHHHHCCCCBCCHHHHHTTCCCSCCS
T ss_pred HHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcCCcccCCHHHHHHHhcchhHHHhhCCCEEcHHHHHHCCCCCCCCC
Confidence 99999888889998 4788999999999999997532 11111000000 023457889999999998 57
Q ss_pred HHHHHHHHHH
Q 020608 305 MDQIIKDSVE 314 (323)
Q Consensus 305 ~~~~l~~~~~ 314 (323)
++++|+++++
T Consensus 284 l~~al~~l~~ 293 (298)
T 4b4o_A 284 LGAALKEIAE 293 (298)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988776
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=254.68 Aligned_cols=223 Identities=21% Similarity=0.238 Sum_probs=172.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|+ +||+|||||||||||++++++|+++|++|++++|++++.. ....+++++.+|++|.+++.++++++|+
T Consensus 1 M~-~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 70 (227)
T 3dhn_A 1 ME-KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIK---------IENEHLKVKKADVSSLDEVCEVCKGADA 70 (227)
T ss_dssp ---CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCC---------CCCTTEEEECCCTTCHHHHHHHHTTCSE
T ss_pred CC-CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccch---------hccCceEEEEecCCCHHHHHHHhcCCCE
Confidence 55 5789999999999999999999999999999999753221 1125789999999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|||+|+.. ... ...+++|+.++.++++++++.++++||++||.+++++.. . ...|+.+..|. +
T Consensus 71 vi~~a~~~-----~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~----~-~~~~~~~~~p~------~ 133 (227)
T 3dhn_A 71 VISAFNPG-----WNN-PDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAP----G-LRLMDSGEVPE------N 133 (227)
T ss_dssp EEECCCC------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEET----T-EEGGGTTCSCG------G
T ss_pred EEEeCcCC-----CCC-hhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCC----C-CccccCCcchH------H
Confidence 99999863 112 237899999999999999999999999999997776653 2 23444444443 6
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC-CCccCcCCCcccHHHHHHHHHHh
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT-DTYENFFMGSVHFKDVALAHILV 239 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~i~v~D~a~~~~~~ 239 (323)
.|+.+|..+|.+++.++++++++++++||+.+|||+...... ..+.. .......++|+|++|+|++++.+
T Consensus 134 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~Dva~ai~~~ 204 (227)
T 3dhn_A 134 ILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRY---------RLGKDDMIVDIVGNSHISVEDYAAAMIDE 204 (227)
T ss_dssp GHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCCCCC---------EEESSBCCCCTTSCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCCccccce---------eecCCCcccCCCCCcEEeHHHHHHHHHHH
Confidence 799999999999998887789999999999999997653321 12222 22222337899999999999999
Q ss_pred hcCCCCCcc-EEEE-cCccCHH
Q 020608 240 YENPSACGR-HLCV-EAISHYG 259 (323)
Q Consensus 240 ~~~~~~~~~-~~~~-~~~~~~~ 259 (323)
++++...|+ |+++ +++.++.
T Consensus 205 l~~~~~~g~~~~~~~~~~~~~~ 226 (227)
T 3dhn_A 205 LEHPKHHQERFTIGYLEHHHHH 226 (227)
T ss_dssp HHSCCCCSEEEEEECCSCCC--
T ss_pred HhCccccCcEEEEEeehhcccC
Confidence 999886555 8875 6777764
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=289.67 Aligned_cols=278 Identities=15% Similarity=0.126 Sum_probs=200.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||+|||||||||||++|+++|+++|++|++++|+..+. ..+.+|+.+. +.++++++|+|||+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~----------------~~v~~d~~~~--~~~~l~~~D~Vih~ 208 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP----------------GKRFWDPLNP--ASDLLDGADVLVHL 208 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT----------------TCEECCTTSC--CTTTTTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc----------------cceeecccch--hHHhcCCCCEEEEC
Confidence 78999999999999999999999999999999986432 1256787653 35667899999999
Q ss_pred ccCCccCC-CCCchhhhhhHHHHHHHHHHHH-HhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 85 ASPCIVDK-VEDPQNQLLNPAVKGTVNVLTA-AKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 85 a~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~-~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+...... ....+...+++|+.++.+++++ +++.++++|||+||+++|..... ..+++|+.+. + .+.|
T Consensus 209 A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~---~~~~~E~~~~-~------~~~y 278 (516)
T 3oh8_A 209 AGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRG---DEILTEESES-G------DDFL 278 (516)
T ss_dssp CCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEE---EEEECTTSCC-C------SSHH
T ss_pred CCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCC---CCccCCCCCC-C------cChH
Confidence 99754422 3455677899999999999999 66677899999999955431322 5678888775 2 2669
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC--ccCcCCCcccHHHHHHHHHHhh
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT--YENFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~i~v~D~a~~~~~~~ 240 (323)
+.+|...|.++..+ ...|++++++||+.+|||+. .....+...+..|.... .+++.++|||++|+|++++.++
T Consensus 279 ~~~~~~~E~~~~~~-~~~gi~~~ilRp~~v~Gp~~----~~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~~~l 353 (516)
T 3oh8_A 279 AEVCRDWEHATAPA-SDAGKRVAFIRTGVALSGRG----GMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRAI 353 (516)
T ss_dssp HHHHHHHHHTTHHH-HHTTCEEEEEEECEEEBTTB----SHHHHHHHTTC---CCCCTTSCCEECEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCEEEEEeeEEECCCC----ChHHHHHHHHHhCCCcccCCCCceEceEeHHHHHHHHHHHH
Confidence 99999999876544 46799999999999999973 12222333333343333 3445677999999999999999
Q ss_pred cCCCCCccEEE-EcCccCHHHHHHHHHHHCCCC---CCCCCCCCCCCC--------CccccccchhHhhhCCcc-cC-HH
Q 020608 241 ENPSACGRHLC-VEAISHYGDFVAKVAELYPEY---DIPRLPKDTQPG--------LLRTKDGAKKLMDLGLQF-IP-MD 306 (323)
Q Consensus 241 ~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~lG~~~-~~-~~ 306 (323)
+++...|.||+ +++.+|+.|+++.+++.+|.. .+|.+....... .....++++|+++|||+| ++ ++
T Consensus 354 ~~~~~~g~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~~lG~~~~~~~l~ 433 (516)
T 3oh8_A 354 VDAQISGPINAVAPNPVSNADMTKILATSMHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAALENLSHTFRYTDIG 433 (516)
T ss_dssp HCTTCCEEEEESCSCCEEHHHHHHHTTC---------------------CCGGGGGGCEEEECCHHHHHTTCCCSCSSHH
T ss_pred hCcccCCcEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhCCchhHHHhhcCCeechHHHHHCCCCCCCCCHH
Confidence 98877788997 477899999999999988643 223222111111 123567889998899999 65 99
Q ss_pred HHHHHHHHH
Q 020608 307 QIIKDSVES 315 (323)
Q Consensus 307 ~~l~~~~~~ 315 (323)
++|+++++.
T Consensus 434 e~l~~~l~~ 442 (516)
T 3oh8_A 434 AAIAHELGY 442 (516)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhCc
Confidence 999999864
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=281.55 Aligned_cols=306 Identities=14% Similarity=0.066 Sum_probs=217.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhh-c---------cCCCCCeEEEEccCCCHhHHH
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKA-L---------EGADTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~---------~~~~~~~~~~~~Dl~~~~~~~ 72 (323)
+.+|+|||||||||||++|+++|++.|++|+++.|+.........+.+ + .....+++++.+|++|.+.+.
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 357899999999999999999999999999999998763332222211 0 011257999999999988877
Q ss_pred HHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCC-CCCCccccCCCCCC
Q 020608 73 AAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPK-WPADKVKDEDCWTD 151 (323)
Q Consensus 73 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~~~~~~e~~~~~ 151 (323)
.+.++|+|||+|+.... ..++...+++|+.++.+++++|++ ++++|||+||.++ +.... .....+++|+++..
T Consensus 147 -~~~~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~ 220 (427)
T 4f6c_A 147 -LPENMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK 220 (427)
T ss_dssp -CSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCS
T ss_pred -CcCCCCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCcccccccccc
Confidence 77799999999997543 356678999999999999999988 7789999999966 22111 11256888988743
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC------chhHHHHHHHHcCCCCCc--cCcC
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL------NASMLMLLRLLQGCTDTY--ENFF 223 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~------~~~~~~~~~~~~g~~~~~--~~~~ 223 (323)
+. .+.+.|+.+|.++|.+++.++ +.|++++++||++||||...... .....++.....+..... ++..
T Consensus 221 ~~---~~~~~Y~~sK~~~E~~~~~~~-~~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (427)
T 4f6c_A 221 GQ---LLTSPYTRSKFYSELKVLEAV-NNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMP 296 (427)
T ss_dssp SC---CCCSHHHHHHHHHHHHHHHHH-HTTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHTCE
T ss_pred CC---CCCCchHHHHHHHHHHHHHHH-HcCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCccccce
Confidence 32 234779999999999999986 47999999999999999765431 123455666666655443 5677
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCCC--CCC-----CCC---------CCCc
Q 020608 224 MGSVHFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIPR--LPK-----DTQ---------PGLL 286 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~--~~~-----~~~---------~~~~ 286 (323)
++|+|++|+|++++.++..+..++.||++ ++++++.|+++.+.+ ++...++. |.. ... ....
T Consensus 297 ~~~v~v~DvA~ai~~~~~~~~~g~~~~l~~~~~~s~~el~~~i~~-~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 375 (427)
T 4f6c_A 297 VDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKR-KEIELVSDESFNEILQKQDMYETIGLTSVDREQQ 375 (427)
T ss_dssp ECCEEHHHHHHHHHHHTTSCCCCSEEEESCSCCEEHHHHHHHHHS-SCCEEECHHHHHHHHHHTTCHHHHHHHHHHHTSE
T ss_pred EEEeeHHHHHHHHHHHHcCCCCCCEEEecCCCCCcHHHHHHHHHH-cCCcccCHHHHHHHHHhcCchhhhhhhhccccCC
Confidence 88999999999999999887766679985 678999999999998 44111110 000 000 0111
Q ss_pred cccccchhH----hhhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 287 RTKDGAKKL----MDLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 287 ~~~~~~~~~----~~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
...+|+++. +++||.+ ..-++.++++++|+++.
T Consensus 376 ~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~ 413 (427)
T 4f6c_A 376 LAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI 413 (427)
T ss_dssp ECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 345566554 5569998 44466899999988764
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=264.84 Aligned_cols=262 Identities=16% Similarity=0.155 Sum_probs=201.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~Vih 83 (323)
|+|||||||||||++++++|+ +|++|++++|++... .+ +.+|++|++++.+++++ +|+|||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~-------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~ 63 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ-------------GG---YKLDLTDFPRLEDFIIKKRPDVIIN 63 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT-------------TC---EECCTTSHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC-------------CC---ceeccCCHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999999 589999999976321 12 78999999999999885 999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+|+........+++...+++|+.++.++++++++.++ +||++||.+++.+. ..+++|+++..+. +.|+
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~-----~~~~~e~~~~~~~------~~Y~ 131 (273)
T 2ggs_A 64 AAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGE-----KGNYKEEDIPNPI------NYYG 131 (273)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSS-----SCSBCTTSCCCCS------SHHH
T ss_pred CCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCC-----CCCcCCCCCCCCC------CHHH
Confidence 9997543222346778999999999999999998876 99999999665433 2377888776553 6799
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhcC
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.+|.++|.+++. ++++++||+.+||+. .....++..+..+.+.. .++ ..+++|++|+|++++.++++
T Consensus 132 ~sK~~~e~~~~~------~~~~~iR~~~v~G~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dva~~i~~~~~~ 199 (273)
T 2ggs_A 132 LSKLLGETFALQ------DDSLIIRTSGIFRNK-----GFPIYVYKTLKEGKTVFAFKG-YYSPISARKLASAILELLEL 199 (273)
T ss_dssp HHHHHHHHHHCC------TTCEEEEECCCBSSS-----SHHHHHHHHHHTTCCEEEESC-EECCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC------CCeEEEecccccccc-----HHHHHHHHHHHcCCCEEeecC-CCCceEHHHHHHHHHHHHhc
Confidence 999999999854 688999999999831 12223344555665543 344 66799999999999999987
Q ss_pred CCCCccEEEEcCccCHHHHHHHHHHHCCCCCC---CCCC-CCCCCCCccccccchhH-hhhCCcc--cCHHHHH
Q 020608 243 PSACGRHLCVEAISHYGDFVAKVAELYPEYDI---PRLP-KDTQPGLLRTKDGAKKL-MDLGLQF--IPMDQII 309 (323)
Q Consensus 243 ~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~-~~lG~~~--~~~~~~l 309 (323)
+. .+.||++++.+|+.|+++.+.+.+|.... +... ...........+|++|+ +.|||+| ++++++|
T Consensus 200 ~~-~g~~~i~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 200 RK-TGIIHVAGERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp TC-CEEEECCCCCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred Cc-CCeEEECCCcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 64 56899866889999999999999975321 1111 11112234578999999 6799998 6888875
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=274.87 Aligned_cols=258 Identities=19% Similarity=0.133 Sum_probs=194.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHC---CCEEEEEecCCCcHHHHHHHhhccCC-------------CCCeEEEEccCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLER---RYTVHATVKNLSDERETAHLKALEGA-------------DTRLRLFQIDLL 66 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~ 66 (323)
.++|+|||||||||||++|+++|+++ |++|++++|+.++......+.+.... ..+++++.+|++
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 150 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS 150 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence 46899999999999999999999999 89999999987654443333222111 258999999998
Q ss_pred ------CHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCC
Q 020608 67 ------DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 67 ------~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
+.+.+.++++++|+|||+|+.... .++...+++|+.++.+++++|++.++++|||+||.++ |+...
T Consensus 151 ~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v-~~~~~--- 222 (478)
T 4dqv_A 151 EPDLGLDQPMWRRLAETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADV-GAAIE--- 222 (478)
T ss_dssp SGGGGCCHHHHHHHHHHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGG-GTTSC---
T ss_pred CcccCCCHHHHHHHHcCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhh-cCccC---
Confidence 667889999999999999998644 5566789999999999999999999999999999854 44432
Q ss_pred CccccCCCCCChhhh-----ccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC----CchhHHHHHHH
Q 020608 141 DKVKDEDCWTDEEYC-----RQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT----LNASMLMLLRL 211 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~-----~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~----~~~~~~~~~~~ 211 (323)
..+++|+.+..+..+ ....+.|+.+|.++|.+++.++.+.|++++++||++||||..... ......++...
T Consensus 223 ~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~ 302 (478)
T 4dqv_A 223 PSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSL 302 (478)
T ss_dssp TTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHH
T ss_pred CCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHH
Confidence 557788876554311 011255999999999999999887899999999999999864221 12222333322
Q ss_pred -HcCCCC-Cc---------cCcCCCcccHHHHHHHHHHhhcC----CC-CCccEEEE-cCc--cCHHHHHHHHHHH
Q 020608 212 -LQGCTD-TY---------ENFFMGSVHFKDVALAHILVYEN----PS-ACGRHLCV-EAI--SHYGDFVAKVAEL 268 (323)
Q Consensus 212 -~~g~~~-~~---------~~~~~~~i~v~D~a~~~~~~~~~----~~-~~~~~~~~-~~~--~~~~e~~~~i~~~ 268 (323)
..|... .+ ++..++++|++|+|++++.++.+ +. .++.||++ ++. +++.|+++.+.+.
T Consensus 303 ~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~ 378 (478)
T 4dqv_A 303 MATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA 378 (478)
T ss_dssp HHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred HHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence 223311 11 14567799999999999999875 33 34569985 555 9999999999985
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=266.74 Aligned_cols=236 Identities=16% Similarity=0.148 Sum_probs=188.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHC-CC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLER-RY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+++|+|||||||||||++|+++|+++ |+ +|++++|++.+.. .....+. ..+++++.+|++|.+.+.++++++|+
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~--~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~D~ 94 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQS--EMAMEFN--DPRMRFFIGDVRDLERLNYALEGVDI 94 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHH--HHHHHHC--CTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHH--HHHHHhc--CCCEEEEECCCCCHHHHHHHHhcCCE
Confidence 45789999999999999999999999 97 9999999643221 1112222 24789999999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|||+||....+....++.+.+++|+.++.+++++|.+.++++||++||..++.+ .+
T Consensus 95 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~~p------------------------~~ 150 (344)
T 2gn4_A 95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAANP------------------------IN 150 (344)
T ss_dssp EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSSC------------------------CS
T ss_pred EEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccCCC------------------------cc
Confidence 999999865433334567899999999999999999999999999999854322 14
Q ss_pred chHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC-CCCc--cCcCCCcccHHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC-TDTY--ENFFMGSVHFKDVAL 234 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~--~~~~~~~i~v~D~a~ 234 (323)
.|+.+|.++|.++..++.+ .+++++++|||+||||... ....+...+..|. +... +...+.|+|++|+|+
T Consensus 151 ~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~----~i~~~~~~~~~g~~~~~i~~~~~~r~~i~v~D~a~ 226 (344)
T 2gn4_A 151 LYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGS----VVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVS 226 (344)
T ss_dssp HHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTS----HHHHHHHHHHHTCCCEEESCTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCC----HHHHHHHHHHcCCCceEEeCCCeEEeeEEHHHHHH
Confidence 5999999999999988754 5899999999999998632 2334555666676 4443 344456999999999
Q ss_pred HHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHCC
Q 020608 235 AHILVYENPSACGRHLCVEAISHYGDFVAKVAELYP 270 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~ 270 (323)
+++.++++...+..|++++..+++.|+++.+.+.++
T Consensus 227 ~v~~~l~~~~~g~~~~~~~~~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 227 FVLKSLKRMHGGEIFVPKIPSMKMTDLAKALAPNTP 262 (344)
T ss_dssp HHHHHHHHCCSSCEEEECCCEEEHHHHHHHHCTTCC
T ss_pred HHHHHHhhccCCCEEecCCCcEEHHHHHHHHHHhCC
Confidence 999999876555568887778999999999987653
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=256.00 Aligned_cols=235 Identities=20% Similarity=0.202 Sum_probs=188.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||+|||||||||||++|+++|+++|++|++++|++.... ..+++++.+|++|.+.+.++++++|+|||+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ 70 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA-----------EAHEEIVACDLADAQAVHDLVKDCDGIIHL 70 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC-----------CTTEEECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc-----------CCCccEEEccCCCHHHHHHHHcCCCEEEEC
Confidence 579999999999999999999999999999999764311 135788999999999999999999999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 164 (323)
|+.. ...++...+++|+.++.++++++++.++++||++||.+++..... ..+++|+++..|. +.|+.
T Consensus 71 a~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~---~~~~~E~~~~~~~------~~Y~~ 137 (267)
T 3ay3_A 71 GGVS----VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPR---TTRIDTEVPRRPD------SLYGL 137 (267)
T ss_dssp CSCC----SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBT---TSCBCTTSCCCCC------SHHHH
T ss_pred CcCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCC---CCCCCCCCCCCCC------ChHHH
Confidence 9874 345667899999999999999999988899999999966544332 4578888876554 67999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 165 SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 165 sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
+|..+|.+++.++.+++++++++||+.+|+... .+....+++|++|+|++++.+++++.
T Consensus 138 sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~~~---------------------~~~~~~~~~~~~dva~~~~~~~~~~~ 196 (267)
T 3ay3_A 138 SKCFGEDLASLYYHKFDIETLNIRIGSCFPKPK---------------------DARMMATWLSVDDFMRLMKRAFVAPK 196 (267)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEECBCSSSCC---------------------SHHHHHHBCCHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeceeecCCCC---------------------CCCeeeccccHHHHHHHHHHHHhCCC
Confidence 999999999998878899999999999994211 01122458999999999999998765
Q ss_pred CC-ccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCCcc-cCHHHHHHHHHH
Q 020608 245 AC-GRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQIIKDSVE 314 (323)
Q Consensus 245 ~~-~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~~~~ 314 (323)
.+ +.|++.+.. .....|..+++.|||+| ++++++++++.+
T Consensus 197 ~~~~~~~~~~~~------------------------------~~~~~d~~~~~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 197 LGCTVVYGASAN------------------------------TESWWDNDKSAFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp CCEEEEEECCSC------------------------------SSCCBCCGGGGGGCCCCCCCGGGGHHHHHH
T ss_pred CCceeEecCCCc------------------------------cccccCHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 43 345553210 11234556667899999 999999998764
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=281.25 Aligned_cols=305 Identities=14% Similarity=0.060 Sum_probs=217.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhh-c---------cCCCCCeEEEEccCCCHhHHHH
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKA-L---------EGADTRLRLFQIDLLDYDAIAA 73 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~---------~~~~~~~~~~~~Dl~~~~~~~~ 73 (323)
.+|+|||||||||||++|+++|++.|++|++++|+.........+.. + .....+++++.+|+++++.+.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~- 227 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV- 227 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence 36899999999999999999999899999999998764322222211 0 011358999999999987777
Q ss_pred HhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCC-CCCCccccCCCCCCh
Q 020608 74 AVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPK-WPADKVKDEDCWTDE 152 (323)
Q Consensus 74 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~~~~~~e~~~~~~ 152 (323)
++.++|+|||+|+.... ..++...+++|+.++.+++++|++ +.++|||+||.++ +.... .....+++|+++..+
T Consensus 228 ~~~~~D~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~~ 302 (508)
T 4f6l_B 228 LPENMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKG 302 (508)
T ss_dssp CSSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCT-TSEECTTCSCCEECTTCSCSS
T ss_pred CccCCCEEEECCceecC---CCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhh-ccCCccCCcCccccccccccc
Confidence 77799999999997532 345677889999999999999988 6789999999966 21111 112568888887433
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC------chhHHHHHHHHcCCCCCc--cCcCC
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL------NASMLMLLRLLQGCTDTY--ENFFM 224 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~------~~~~~~~~~~~~g~~~~~--~~~~~ 224 (323)
. .+.+.|+.+|..+|.+++.++ +.|++++++||+.||||...... .....++.....+..... +++.+
T Consensus 303 ~---~~~~~Y~~sK~~~E~~~~~~~-~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~ 378 (508)
T 4f6l_B 303 Q---LLTSPYTRSKFYSELKVLEAV-NNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPV 378 (508)
T ss_dssp B---CCCSHHHHHHHHHHHHHHHHH-HTTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGSEE
T ss_pred c---cCCCcHHHHHHHHHHHHHHHH-HcCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCceE
Confidence 2 244779999999999999976 47999999999999999765431 123455555555554433 45677
Q ss_pred CcccHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCCCC--CCCC---CC-----------CCCCcc
Q 020608 225 GSVHFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYDIP--RLPK---DT-----------QPGLLR 287 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~--~~~~---~~-----------~~~~~~ 287 (323)
+|+|++|+|++++.++.++..++.||++ ++.+++.|+++.+.+.. ...++ .|.. .. ......
T Consensus 379 ~~v~v~DvA~ai~~~~~~~~~~~~~nl~~~~~~s~~el~~~i~~~~-~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~ 457 (508)
T 4f6l_B 379 DFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKE-IELVSDESFNEILQKQDMYETIGLTSVDREQQL 457 (508)
T ss_dssp ECEEHHHHHHHHHHHTTBCCSCSEEEESCSCEEEHHHHHHHHHSSC-CEEECHHHHHHHHHTTCCHHHHHHHHTGGGSEE
T ss_pred EEEcHHHHHHHHHHHHhCCCCCCEEEeCCCCCCCHHHHHHHHHHcC-CcccCHHHHHHHHHhcCCccchhcccccccCcc
Confidence 7999999999999999877666679985 67899999999999754 11110 0000 00 001123
Q ss_pred ccccchhH----hhhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 288 TKDGAKKL----MDLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 288 ~~~~~~~~----~~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
..+|+++. +++||.+ ...++.++++++|+++.
T Consensus 458 ~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~ 494 (508)
T 4f6l_B 458 AMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI 494 (508)
T ss_dssp CEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHH
T ss_pred eecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 45565553 5679998 55577899999988764
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=248.26 Aligned_cols=214 Identities=23% Similarity=0.243 Sum_probs=177.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
|+||+|||||||||||++|+++|+++|++|++++|++.... ..+++++.+|++|.+++.++++++|+||
T Consensus 1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi 69 (267)
T 3rft_A 1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADANAVNAMVAGCDGIV 69 (267)
T ss_dssp CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCHHHHHHHHcCCCEEE
Confidence 35789999999999999999999999999999999864322 3478999999999999999999999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+||.. ...++...+++|+.++.++++++++.+.++||++||.+++..... ..+++|+.+..+. +.|
T Consensus 70 ~~Ag~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~---~~~~~e~~~~~~~------~~Y 136 (267)
T 3rft_A 70 HLGGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQ---TERLGPDVPARPD------GLY 136 (267)
T ss_dssp ECCSCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBT---TSCBCTTSCCCCC------SHH
T ss_pred ECCCCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCC---CCCCCCCCCCCCC------ChH
Confidence 999983 456788899999999999999999999899999999977654433 5678888776554 779
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
+.||.++|.+++.++.+++++++++||+.+||+.... ....+|+|++|+++++..+++.
T Consensus 137 ~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~~~---------------------~~~~~~~~~~d~a~~~~~~~~~ 195 (267)
T 3rft_A 137 GVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNY---------------------RMLSTWFSHDDFVSLIEAVFRA 195 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSCCST---------------------THHHHBCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCCCCC---------------------CceeeEEcHHHHHHHHHHHHhC
Confidence 9999999999999998899999999999999974321 1223478999999999999988
Q ss_pred CCCCc-cEE-EEcCccCHHHH
Q 020608 243 PSACG-RHL-CVEAISHYGDF 261 (323)
Q Consensus 243 ~~~~~-~~~-~~~~~~~~~e~ 261 (323)
+..++ .++ ++++..++.++
T Consensus 196 ~~~~~~~~~~~s~~~~~~~~~ 216 (267)
T 3rft_A 196 PVLGCPVVWGASANDAGWWDN 216 (267)
T ss_dssp SCCCSCEEEECCCCTTCCBCC
T ss_pred CCCCceEEEEeCCCCCCcccC
Confidence 76644 444 46665555444
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=249.91 Aligned_cols=255 Identities=17% Similarity=0.196 Sum_probs=191.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
|+|||||||||||++++++|+++ |++|++++|++.+... +.. .+++++.+|++|.+++.++++++|+|||
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~---l~~-----~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 72 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST---LAD-----QGVEVRHGDYNQPESLQKAFAGVSKLLF 72 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHH---HHH-----TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhH---Hhh-----cCCeEEEeccCCHHHHHHHHhcCCEEEE
Confidence 57999999999999999999998 9999999997654322 111 2678899999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+|+.. . . . ++|+.++.+++++|++.++++||++||.+++ ..+ ..|+
T Consensus 73 ~a~~~-~----~---~--~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~-~~~-----------------------~~y~ 118 (287)
T 2jl1_A 73 ISGPH-Y----D---N--TLLIVQHANVVKAARDAGVKHIAYTGYAFAE-ESI-----------------------IPLA 118 (287)
T ss_dssp CCCCC-S----C---H--HHHHHHHHHHHHHHHHTTCSEEEEEEETTGG-GCC-----------------------STHH
T ss_pred cCCCC-c----C---c--hHHHHHHHHHHHHHHHcCCCEEEEECCCCCC-CCC-----------------------CchH
Confidence 99852 1 1 1 6799999999999999999999999998543 110 2499
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC-CccCcCCCcccHHHHHHHHHHhhcC
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD-TYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.+|..+|.+++ +++++++++||+.++|+... .... .....+... ..+++.++|+|++|+|++++.++++
T Consensus 119 ~~K~~~E~~~~----~~~~~~~ilrp~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~ 188 (287)
T 2jl1_A 119 HVHLATEYAIR----TTNIPYTFLRNALYTDFFVN---EGLR---ASTESGAIVTNAGSGIVNSVTRNELALAAATVLTE 188 (287)
T ss_dssp HHHHHHHHHHH----HTTCCEEEEEECCBHHHHSS---GGGH---HHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHH----HcCCCeEEEECCEeccccch---hhHH---HHhhCCceeccCCCCccCccCHHHHHHHHHHHhcC
Confidence 99999999885 46899999999999886421 1111 112233322 2456677899999999999999987
Q ss_pred CCC-CccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCC-----------CCCC--------------CccccccchhH
Q 020608 243 PSA-CGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKD-----------TQPG--------------LLRTKDGAKKL 295 (323)
Q Consensus 243 ~~~-~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~-----------~~~~--------------~~~~~~~~~~~ 295 (323)
+.. +..||++ ++.+|+.|+++.+.+.+|... +..... ..+. ...+..|++++
T Consensus 189 ~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (287)
T 2jl1_A 189 EGHENKTYNLVSNQPWTFDELAQILSEVSGKKV-VHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDDL 267 (287)
T ss_dssp SSCTTEEEEECCSSCBCHHHHHHHHHHHHSSCC-EEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCSHH
T ss_pred CCCCCcEEEecCCCcCCHHHHHHHHHHHHCCcc-eEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCchHH
Confidence 644 3469986 568999999999999987421 111000 0000 01245688999
Q ss_pred -hhhCCcccCHHHHHHHHHH
Q 020608 296 -MDLGLQFIPMDQIIKDSVE 314 (323)
Q Consensus 296 -~~lG~~~~~~~~~l~~~~~ 314 (323)
+.|| .+++++++|+++++
T Consensus 268 ~~~lG-~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 268 QKLIG-SLTPLKETVKQALK 286 (287)
T ss_dssp HHHHS-SCCCHHHHHHHHHT
T ss_pred HHHhC-CCCCHHHHHHHHhc
Confidence 7799 44999999999875
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-35 Score=240.16 Aligned_cols=208 Identities=18% Similarity=0.212 Sum_probs=167.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC-HhHHHHHhcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD-YDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~d~Vih~ 84 (323)
|+|||||||||||++++++|+++|++|++++|++.+... ..+++++.+|++| .+++.++++++|+|||+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ 70 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ----------YNNVKAVHFDVDWTPEEMAKQLHGMDAIINV 70 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC----------CTTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh----------cCCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence 489999999999999999999999999999997532211 1478999999999 99999999999999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 164 (323)
|+... ...+++|+.++.++++++++.++++||++||.+++.+ .+..| .+. .+.+.|+.
T Consensus 71 ag~~~--------~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~~~e-~~~------~~~~~Y~~ 128 (219)
T 3dqp_A 71 SGSGG--------KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQP-------EKWIG-AGF------DALKDYYI 128 (219)
T ss_dssp CCCTT--------SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCG-------GGCCS-HHH------HHTHHHHH
T ss_pred CcCCC--------CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCC-------Ccccc-ccc------ccccHHHH
Confidence 98742 2378899999999999999999999999999854432 23333 111 22367999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 165 SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 165 sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
+|..+|.+++ +..+++++++||+.+||+....... .++...+++|++|+|++++.+++++.
T Consensus 129 sK~~~e~~~~---~~~~i~~~ilrp~~v~g~~~~~~~~----------------~~~~~~~~i~~~Dva~~i~~~l~~~~ 189 (219)
T 3dqp_A 129 AKHFADLYLT---KETNLDYTIIQPGALTEEEATGLID----------------INDEVSASNTIGDVADTIKELVMTDH 189 (219)
T ss_dssp HHHHHHHHHH---HSCCCEEEEEEECSEECSCCCSEEE----------------ESSSCCCCEEHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHH---hccCCcEEEEeCceEecCCCCCccc----------------cCCCcCCcccHHHHHHHHHHHHhCcc
Confidence 9999999986 4679999999999999986432111 23566779999999999999999876
Q ss_pred CCc-cEEEEcCccCHHHHHHH
Q 020608 245 ACG-RHLCVEAISHYGDFVAK 264 (323)
Q Consensus 245 ~~~-~~~~~~~~~~~~e~~~~ 264 (323)
..+ .||++++..+++|+...
T Consensus 190 ~~g~~~~i~~g~~~~~e~~~~ 210 (219)
T 3dqp_A 190 SIGKVISMHNGKTAIKEALES 210 (219)
T ss_dssp GTTEEEEEEECSEEHHHHHHT
T ss_pred ccCcEEEeCCCCccHHHHHHH
Confidence 544 59987667999988753
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=240.15 Aligned_cols=215 Identities=19% Similarity=0.234 Sum_probs=167.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCe-EEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRL-RLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++|+|||||||||||++++++|+++|++|++++|++++... +.. .++ +++.+|++ +++.+++.++|+|
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~---~~~-----~~~~~~~~~Dl~--~~~~~~~~~~D~v 88 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE---LRE-----RGASDIVVANLE--EDFSHAFASIDAV 88 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH---HHH-----TTCSEEEECCTT--SCCGGGGTTCSEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH---HHh-----CCCceEEEcccH--HHHHHHHcCCCEE
Confidence 578999999999999999999999999999999998644322 111 267 89999999 6788888999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
||+|+... ..++...+++|+.++.++++++++.++++||++||.++..+ +..+ . +.+.
T Consensus 89 i~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-----------~~~~-~------~~~~ 146 (236)
T 3e8x_A 89 VFAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-----------DQGP-M------NMRH 146 (236)
T ss_dssp EECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-----------GGSC-G------GGHH
T ss_pred EECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-----------CCCh-h------hhhh
Confidence 99999742 35678899999999999999999988999999999633221 1111 1 1256
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhc
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
|+.+|.++|.+++ +.+++++++||+.++|+........ ...+.+..+++|++|+|++++.+++
T Consensus 147 Y~~sK~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~~~~~-------------~~~~~~~~~~i~~~Dva~~~~~~~~ 209 (236)
T 3e8x_A 147 YLVAKRLADDELK----RSSLDYTIVRPGPLSNEESTGKVTV-------------SPHFSEITRSITRHDVAKVIAELVD 209 (236)
T ss_dssp HHHHHHHHHHHHH----HSSSEEEEEEECSEECSCCCSEEEE-------------ESSCSCCCCCEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH----HCCCCEEEEeCCcccCCCCCCeEEe-------------ccCCCcccCcEeHHHHHHHHHHHhc
Confidence 9999999999875 6799999999999999864321100 0122335679999999999999999
Q ss_pred CCCCCc-cEEEEcCccCHHHHHHHHH
Q 020608 242 NPSACG-RHLCVEAISHYGDFVAKVA 266 (323)
Q Consensus 242 ~~~~~~-~~~~~~~~~~~~e~~~~i~ 266 (323)
++...| .|+++++.+++.|+++.++
T Consensus 210 ~~~~~g~~~~v~~~~~~~~e~~~~i~ 235 (236)
T 3e8x_A 210 QQHTIGKTFEVLNGDTPIAKVVEQLG 235 (236)
T ss_dssp CGGGTTEEEEEEECSEEHHHHHHTC-
T ss_pred CccccCCeEEEeCCCcCHHHHHHHhc
Confidence 875444 5888666799999998765
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=248.69 Aligned_cols=255 Identities=18% Similarity=0.174 Sum_probs=184.7
Q ss_pred eEEEeccccHHHHHHHHHHHHC--CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 7 VVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
+|||||||||||++++++|+++ |++|++++|++++... +.. .+++++.+|++|.+++.++++++|+|||+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~---~~~-----~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 72 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA---LAA-----QGITVRQADYGDEAALTSALQGVEKLLLI 72 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHH---HHH-----TTCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhh---hhc-----CCCeEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence 5899999999999999999998 9999999998654322 111 26788999999999999999999999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 164 (323)
|+.. ...|+.++.+++++|++.++++||++||.+++ ..+ ..|+.
T Consensus 73 a~~~------------~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~-~~~-----------------------~~y~~ 116 (286)
T 2zcu_A 73 SSSE------------VGQRAPQHRNVINAAKAAGVKFIAYTSLLHAD-TSP-----------------------LGLAD 116 (286)
T ss_dssp C--------------------CHHHHHHHHHHHHTCCEEEEEEETTTT-TCC-----------------------STTHH
T ss_pred CCCC------------chHHHHHHHHHHHHHHHcCCCEEEEECCCCCC-CCc-----------------------chhHH
Confidence 9852 02478899999999999899999999998543 110 34999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHH-cCCCC-CccCcCCCcccHHHHHHHHHHhhcC
Q 020608 165 SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLL-QGCTD-TYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 165 sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
+|..+|.+++ +++++++++||+.++++... .+.... .+... ..+++.++++|++|+|++++.++++
T Consensus 117 sK~~~e~~~~----~~~~~~~ilrp~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~ 184 (286)
T 2zcu_A 117 EHIETEKMLA----DSGIVYTLLRNGWYSENYLA--------SAPAALEHGVFIGAAGDGKIASATRADYAAAAARVISE 184 (286)
T ss_dssp HHHHHHHHHH----HHCSEEEEEEECCBHHHHHT--------THHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH----HcCCCeEEEeChHHhhhhHH--------HhHHhhcCCceeccCCCCccccccHHHHHHHHHHHhcC
Confidence 9999999885 35899999999877665321 112222 23221 1345667899999999999999987
Q ss_pred CCC-CccEEEE-cCccCHHHHHHHHHHHCCCCC----CCCCCCC------CCCC--------------CccccccchhH-
Q 020608 243 PSA-CGRHLCV-EAISHYGDFVAKVAELYPEYD----IPRLPKD------TQPG--------------LLRTKDGAKKL- 295 (323)
Q Consensus 243 ~~~-~~~~~~~-~~~~~~~e~~~~i~~~~~~~~----~~~~~~~------~~~~--------------~~~~~~~~~~~- 295 (323)
+.. ++.||++ ++.+|+.|+++.+.+.+|... +|..... ..+. ......|++++
T Consensus 185 ~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (286)
T 2zcu_A 185 AGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLS 264 (286)
T ss_dssp SSCTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCHHH
T ss_pred CCCCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchHHH
Confidence 544 4469986 458999999999999986421 1111000 0000 01245688899
Q ss_pred hhhCCcccCHHHHHHHHHHHHH
Q 020608 296 MDLGLQFIPMDQIIKDSVESLK 317 (323)
Q Consensus 296 ~~lG~~~~~~~~~l~~~~~~~~ 317 (323)
+.|||.+++++++|+++++|+.
T Consensus 265 ~~lg~~~~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 265 KLIGHPTTTLAESVSHLFNVNN 286 (286)
T ss_dssp HHHTSCCCCHHHHHHGGGC---
T ss_pred HHhCcCCCCHHHHHHHHHhhcC
Confidence 7799866999999999998863
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=249.56 Aligned_cols=210 Identities=16% Similarity=0.128 Sum_probs=175.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
|+|||||||||||++|+++|+++|+ +|++++|+ +|.+++.++++++|+|||+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~---------------------------~d~~~l~~~~~~~d~Vih~ 53 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ---------------------------TKEEELESALLKADFIVHL 53 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT---------------------------CCHHHHHHHHHHCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC---------------------------CCHHHHHHHhccCCEEEEC
Confidence 5899999999999999999999998 88766442 6788899999999999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
|+.... .++...+++|+.++.+++++|++.+++ +|||+||.+++. . +.|+
T Consensus 54 a~~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~-~------------------------~~Y~ 104 (369)
T 3st7_A 54 AGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ-D------------------------NPYG 104 (369)
T ss_dssp CCSBCT----TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS-C------------------------SHHH
T ss_pred CcCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC-C------------------------CCch
Confidence 997532 456678899999999999999999887 999999995543 1 4599
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC-chhHHHHHHHHcCCCCCc--cCcCCCcccHHHHHHHHHHhh
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL-NASMLMLLRLLQGCTDTY--ENFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~-~~~~~~~~~~~~g~~~~~--~~~~~~~i~v~D~a~~~~~~~ 240 (323)
.+|.++|.+++.++++.+++++++||+++|||+..... .....++..+..+.+... ++..++++|++|+|++++.++
T Consensus 105 ~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l 184 (369)
T 3st7_A 105 ESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAI 184 (369)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHHH
Confidence 99999999999999888999999999999999876543 234455666777776653 455667999999999999999
Q ss_pred cCCCC--CccEEEE-cCccCHHHHHHHHHHHCCC
Q 020608 241 ENPSA--CGRHLCV-EAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 241 ~~~~~--~~~~~~~-~~~~~~~e~~~~i~~~~~~ 271 (323)
+++.. ++.||++ ++.+|+.|+++.+.+.+|.
T Consensus 185 ~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~ 218 (369)
T 3st7_A 185 EGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQS 218 (369)
T ss_dssp HTCCCEETTEECCSCCEEEEHHHHHHHHHHHHHH
T ss_pred hCCcccCCceEEeCCCCceeHHHHHHHHHHHhCC
Confidence 98776 5678875 6789999999999998854
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=223.67 Aligned_cols=213 Identities=13% Similarity=0.029 Sum_probs=160.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|||||||||||++|+++|+++|++|+++.|++.+. ..+ . ..+++++.+|++|.++ +.+.++|+|||+|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~---~~~---~--~~~~~~~~~D~~d~~~--~~~~~~d~vi~~a 70 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA---ADR---L--GATVATLVKEPLVLTE--ADLDSVDAVVDAL 70 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHH---T--CTTSEEEECCGGGCCH--HHHTTCSEEEECC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc---ccc---c--CCCceEEecccccccH--hhcccCCEEEECC
Confidence 4799999999999999999999999999999974221 111 1 2478999999999887 7789999999999
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+.... ....++|+.++.++++++++.+ +++|++||.++++...... ..+.+|+.... +.+.|+.+
T Consensus 71 g~~~~-------~~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~-~~~~~~~~~~~------~~~~y~~s 135 (224)
T 3h2s_A 71 SVPWG-------SGRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADH-PMILDFPESAA------SQPWYDGA 135 (224)
T ss_dssp CCCTT-------SSCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSS-CGGGGCCGGGG------GSTTHHHH
T ss_pred ccCCC-------cchhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCc-cccccCCCCCc------cchhhHHH
Confidence 87411 1235789999999999999999 9999999997777654311 12444443332 23679999
Q ss_pred HHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCC
Q 020608 166 KTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 166 K~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
|..+|.+ ..+.++.+++++++||+.+|||+.... .. ........+....+++|++|+|++++.+++++..
T Consensus 136 K~~~e~~-~~~~~~~~i~~~ivrp~~v~g~~~~~~-~~--------~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~ 205 (224)
T 3h2s_A 136 LYQYYEY-QFLQMNANVNWIGISPSEAFPSGPATS-YV--------AGKDTLLVGEDGQSHITTGNMALAILDQLEHPTA 205 (224)
T ss_dssp HHHHHHH-HHHTTCTTSCEEEEEECSBCCCCCCCC-EE--------EESSBCCCCTTSCCBCCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHH-HHHHhcCCCcEEEEcCccccCCCcccC-ce--------ecccccccCCCCCceEeHHHHHHHHHHHhcCccc
Confidence 9999954 445556799999999999999954322 10 1112222345556799999999999999998876
Q ss_pred Ccc-EEEEc
Q 020608 246 CGR-HLCVE 253 (323)
Q Consensus 246 ~~~-~~~~~ 253 (323)
.++ |++++
T Consensus 206 ~g~~~~~~~ 214 (224)
T 3h2s_A 206 IRDRIVVRD 214 (224)
T ss_dssp TTSEEEEEE
T ss_pred cCCEEEEec
Confidence 554 88754
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=225.28 Aligned_cols=214 Identities=14% Similarity=0.151 Sum_probs=143.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|||||||||||++|+++|+++|++|++++|++++.. . +. .+++++.+|++|.++ +.+.++|+|||+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~---~---~~---~~~~~~~~D~~d~~~--~~~~~~d~vi~~a 69 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKIT---Q---TH---KDINILQKDIFDLTL--SDLSDQNVVVDAY 69 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHH---H---HC---SSSEEEECCGGGCCH--HHHTTCSEEEECC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhh---h---cc---CCCeEEeccccChhh--hhhcCCCEEEECC
Confidence 57999999999999999999999999999999753221 1 11 378999999999887 7789999999999
Q ss_pred cCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHH
Q 020608 86 SPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165 (323)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~s 165 (323)
+... ...+.|+.++.++++++++.+++++|++||.+++++... ..+..|+.+..+. +.|+.+
T Consensus 70 g~~~---------~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~---~~~~~~~~~~~~~------~~y~~~ 131 (221)
T 3ew7_A 70 GISP---------DEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDED---GNTLLESKGLREA------PYYPTA 131 (221)
T ss_dssp CSST---------TTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC----------------------C------CCSCCH
T ss_pred cCCc---------cccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCC---CccccccCCCCCH------HHHHHH
Confidence 8731 135679999999999999998899999999988876653 2345555544433 679999
Q ss_pred HHHHHHHHHHHHH-hCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 166 KTLAEKAAWEFAK-EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 166 K~~~e~~~~~~~~-~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
|..+|.+. .+.. ..+++++++||+.+|||+..... + . ..+...........++|++|+|++++.+++++.
T Consensus 132 k~~~e~~~-~~~~~~~gi~~~ivrp~~v~g~~~~~~~-----~--~-~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~ 202 (221)
T 3ew7_A 132 RAQAKQLE-HLKSHQAEFSWTYISPSAMFEPGERTGD-----Y--Q-IGKDHLLFGSDGNSFISMEDYAIAVLDEIERPN 202 (221)
T ss_dssp HHHHHHHH-HHHTTTTTSCEEEEECSSCCCCC-----------------------------CCCHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHH-HHHhhccCccEEEEeCcceecCCCccCc-----e--E-eccccceecCCCCceEeHHHHHHHHHHHHhCcc
Confidence 99999873 3333 67999999999999998432111 0 0 111222222222469999999999999999887
Q ss_pred CCcc-EEEEc-CccC
Q 020608 245 ACGR-HLCVE-AISH 257 (323)
Q Consensus 245 ~~~~-~~~~~-~~~~ 257 (323)
..++ ||+++ ...+
T Consensus 203 ~~g~~~~~~~~~~~~ 217 (221)
T 3ew7_A 203 HLNEHFTVAGKLEHH 217 (221)
T ss_dssp CTTSEEECCC-----
T ss_pred ccCCEEEECCCCccc
Confidence 6554 88753 4443
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=230.86 Aligned_cols=231 Identities=22% Similarity=0.171 Sum_probs=171.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
++||+|||||||||||++++++|+++ |++|+++.|++.+ .. .+ ..+++++.+|++|.+++.++++++|+
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~---~~---~~---~~~~~~~~~D~~d~~~~~~~~~~~d~ 72 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG---KE---KI---GGEADVFIGDITDADSINPAFQGIDA 72 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHH---HH---HT---TCCTTEEECCTTSHHHHHHHHTTCSE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCc---hh---hc---CCCeeEEEecCCCHHHHHHHHcCCCE
Confidence 56899999999999999999999999 8999999996422 11 11 23677899999999999999999999
Q ss_pred EEEcccCCccCC-------------CCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 81 VFHLASPCIVDK-------------VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 81 Vih~a~~~~~~~-------------~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
|||+|+...... ..+.+...+++|+.++.++++++++.++++||++||.+++....
T Consensus 73 vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~~~----------- 141 (253)
T 1xq6_A 73 LVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDH----------- 141 (253)
T ss_dssp EEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTC-----------
T ss_pred EEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCCCC-----------
Confidence 999999753210 11222356799999999999999988889999999985432110
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSV 227 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 227 (323)
+..+ +. .+.|+.+|..+|.+++ +.+++++++||+.+|||...... +..+...........++
T Consensus 142 -~~~~-~~---~~~y~~sK~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 203 (253)
T 1xq6_A 142 -PLNK-LG---NGNILVWKRKAEQYLA----DSGTPYTIIRAGGLLDKEGGVRE---------LLVGKDDELLQTDTKTV 203 (253)
T ss_dssp -GGGG-GG---GCCHHHHHHHHHHHHH----TSSSCEEEEEECEEECSCSSSSC---------EEEESTTGGGGSSCCEE
T ss_pred -cccc-cc---chhHHHHHHHHHHHHH----hCCCceEEEecceeecCCcchhh---------hhccCCcCCcCCCCcEE
Confidence 1100 11 1348889999998874 47999999999999998643211 01111111111234599
Q ss_pred cHHHHHHHHHHhhcCCCCC-ccEEEEc----CccCHHHHHHHHHHHCCC
Q 020608 228 HFKDVALAHILVYENPSAC-GRHLCVE----AISHYGDFVAKVAELYPE 271 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~~~~-~~~~~~~----~~~~~~e~~~~i~~~~~~ 271 (323)
|++|+|++++.+++++... ..||+++ +.+++.|+++.+.+.+|.
T Consensus 204 ~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 204 PRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp EHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 9999999999999876543 4588754 358999999999998764
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=242.66 Aligned_cols=274 Identities=12% Similarity=0.076 Sum_probs=187.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc-HHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD-ERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCT 79 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 79 (323)
|++|+|||||||||||++|+++|+++|++|+++.|+++. ......+..+. ..+++++.+|++|.+++.++++ ++|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~--~~~v~~~~~Dl~d~~~l~~~~~~~~~d 85 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALE--DKGAIIVYGLINEQEAMEKILKEHEID 85 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHH--hCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence 345799999999999999999999999999999998632 23333332322 2478999999999999999999 999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
+|||+|+. .|+.++.+++++|++.+ +++||+ |+. +...+|+.+..|.
T Consensus 86 ~Vi~~a~~---------------~n~~~~~~l~~aa~~~g~v~~~v~-S~~-----------g~~~~e~~~~~p~----- 133 (346)
T 3i6i_A 86 IVVSTVGG---------------ESILDQIALVKAMKAVGTIKRFLP-SEF-----------GHDVNRADPVEPG----- 133 (346)
T ss_dssp EEEECCCG---------------GGGGGHHHHHHHHHHHCCCSEEEC-SCC-----------SSCTTTCCCCTTH-----
T ss_pred EEEECCch---------------hhHHHHHHHHHHHHHcCCceEEee-ccc-----------CCCCCccCcCCCc-----
Confidence 99999986 16778999999999998 999986 432 1123444444443
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHHHHHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDVALA 235 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~a~~ 235 (323)
+.|+.+|..+|.+++ +.|++++++||+.++|........ .......+.... . ++..++|+|++|+|++
T Consensus 134 -~~y~~sK~~~e~~l~----~~g~~~tivrpg~~~g~~~~~~~~----~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~ 204 (346)
T 3i6i_A 134 -LNMYREKRRVRQLVE----ESGIPFTYICCNSIASWPYYNNIH----PSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKF 204 (346)
T ss_dssp -HHHHHHHHHHHHHHH----HTTCCBEEEECCEESSCCCSCC---------CCCCSSCEEEETTSCCCEEEECHHHHHHH
T ss_pred -chHHHHHHHHHHHHH----HcCCCEEEEEecccccccCccccc----cccccCCCceEEEccCCCceEEecCHHHHHHH
Confidence 569999999999885 468999999999999975432111 011111222222 3 3445679999999999
Q ss_pred HHHhhcCCCC-CccEEEE--cCccCHHHHHHHHHHHCCCCCCCCC--CCC-------CCCCCcc---------------c
Q 020608 236 HILVYENPSA-CGRHLCV--EAISHYGDFVAKVAELYPEYDIPRL--PKD-------TQPGLLR---------------T 288 (323)
Q Consensus 236 ~~~~~~~~~~-~~~~~~~--~~~~~~~e~~~~i~~~~~~~~~~~~--~~~-------~~~~~~~---------------~ 288 (323)
++.++.++.. ++.|++. ++.+|+.|+++.+.+.+|.. ++.. ... ....+.. .
T Consensus 205 ~~~~l~~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 283 (346)
T 3i6i_A 205 TMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRT-LPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQV 283 (346)
T ss_dssp HHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSC-CCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHhCccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCC-CceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccCCCc
Confidence 9999998765 4457764 57899999999999998642 1110 000 0000000 0
Q ss_pred cccc-----hhHhhh--CCcccCHHHHHHHHHHHHHHcC
Q 020608 289 KDGA-----KKLMDL--GLQFIPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 289 ~~~~-----~~~~~l--G~~~~~~~~~l~~~~~~~~~~~ 320 (323)
.++. .+++++ +++++++++.|+++++|+.++.
T Consensus 284 ~~~~~~~~~~~~~~~~p~~~~t~~~e~l~~~~~~~~~~~ 322 (346)
T 3i6i_A 284 NFSIDGPEDVEVTTLYPEDSFRTVEECFGEYIVKMEEKQ 322 (346)
T ss_dssp SSCCCSTTEEEHHHHSTTCCCCCHHHHHHHHHCC-----
T ss_pred ccccCCCCcccHHHhCCCCCcCcHHHHHHHHHHHhhccc
Confidence 1222 223332 6777999999999999988763
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-31 Score=230.47 Aligned_cols=243 Identities=19% Similarity=0.117 Sum_probs=170.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+||||||+|+||++++++|+++|++|++++|+...... ..... ..+++++.+|++|.++++++++
T Consensus 1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~--~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (281)
T 3m1a_A 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDD--LVAAY---PDRAEAISLDVTDGERIDVVAADVLA 75 (281)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH--HHHHC---TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH--HHHhc---cCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999997543322 22222 3478999999999999888776
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHH----HhhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTA----AKALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||..... .+.+++...+++|+.++.+++++ +++.+.++||++||.+++.+...
T Consensus 76 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 147 (281)
T 3m1a_A 76 RYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFAG-------- 147 (281)
T ss_dssp HHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTT--------
T ss_pred hCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCCCC--------
Confidence 789999999976432 23456778999999995555554 45666789999999976654331
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCch----hHHHHHHHHcCCCCC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNA----SMLMLLRLLQGCTDT 218 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~----~~~~~~~~~~g~~~~ 218 (323)
.+.|+.||.+.|.+++.++.+ +|++++++|||.+++|........ ...+...........
T Consensus 148 -------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (281)
T 3m1a_A 148 -------------FSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLV 214 (281)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHH
Confidence 145999999999999999887 699999999999998864321100 000111111100000
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELY 269 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~ 269 (323)
.......+++++|+|++++.+++.+..++.|+++ +....+.+.+..+.+.+
T Consensus 215 ~~~~~~~~~~~~dva~a~~~~~~~~~~~~~~~l~s~~~~~i~g~~~~i~~~~ 266 (281)
T 3m1a_A 215 QGSDGSQPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAEL 266 (281)
T ss_dssp HC-----CBCHHHHHHHHHHHHHSSSCCSEEEESHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCHHHHHHHHHHHHhCCCCCeEEecCchHHHHHHHHHHHHHHHH
Confidence 1112234788999999999999988777778875 44445566665555443
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-32 Score=225.28 Aligned_cols=207 Identities=17% Similarity=0.142 Sum_probs=158.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
|++++|+|||||||||||++++++|+++|+ +|++++|++.+ ...+++++.+|++|.+++.+++ +
T Consensus 1 M~~~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------------~~~~~~~~~~D~~~~~~~~~~~--~ 66 (215)
T 2a35_A 1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------------EHPRLDNPVGPLAELLPQLDGS--I 66 (215)
T ss_dssp ---CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------------CCTTEECCBSCHHHHGGGCCSC--C
T ss_pred CCCCCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------------cCCCceEEeccccCHHHHHHhh--h
Confidence 666678999999999999999999999998 99999998654 0246888899999988888777 9
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
|+|||+|+.... ...++...+++|+.++.++++++++.++++||++||.+++. .+
T Consensus 67 d~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~-~~---------------------- 121 (215)
T 2a35_A 67 DTAFCCLGTTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-KS---------------------- 121 (215)
T ss_dssp SEEEECCCCCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-TC----------------------
T ss_pred cEEEECeeeccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCC-CC----------------------
Confidence 999999987432 23457788999999999999999999999999999985432 11
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCcc-EEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLD-VVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHI 237 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~-~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~ 237 (323)
.+.|+.+|..+|.+++ ..+++ ++++||+.+|||...... ...+. +.....+++.++++|++|+|++++
T Consensus 122 ~~~y~~sK~~~e~~~~----~~~~~~~~~vrp~~v~g~~~~~~~------~~~~~-~~~~~~~~~~~~~i~~~Dva~~~~ 190 (215)
T 2a35_A 122 SIFYNRVKGELEQALQ----EQGWPQLTIARPSLLFGPREEFRL------AEILA-APIARILPGKYHGIEACDLARALW 190 (215)
T ss_dssp SSHHHHHHHHHHHHHT----TSCCSEEEEEECCSEESTTSCEEG------GGGTT-CCCC----CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH----HcCCCeEEEEeCceeeCCCCcchH------HHHHH-HhhhhccCCCcCcEeHHHHHHHHH
Confidence 1459999999999885 45899 999999999999754211 11111 221222333556999999999999
Q ss_pred HhhcCCCCCccEEEE-cCccCH
Q 020608 238 LVYENPSACGRHLCV-EAISHY 258 (323)
Q Consensus 238 ~~~~~~~~~~~~~~~-~~~~~~ 258 (323)
.+++++. ++.||++ ++.+++
T Consensus 191 ~~~~~~~-~~~~~i~~~~~~~~ 211 (215)
T 2a35_A 191 RLALEEG-KGVRFVESDELRKL 211 (215)
T ss_dssp HHHTCCC-SEEEEEEHHHHHHH
T ss_pred HHHhcCC-CCceEEcHHHHHHh
Confidence 9999875 6779986 444443
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=230.60 Aligned_cols=252 Identities=16% Similarity=0.180 Sum_probs=180.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
|+|||||||||||++++++|+++ |++|+++.|++++... +. ..+++++.+|++|++++.++++++|+|||+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~------~~--~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~ 72 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPD------DW--RGKVSVRQLDYFNQESMVEAFKGMDTVVFI 72 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCG------GG--BTTBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHH------hh--hCCCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence 57999999999999999999998 9999999997643211 11 247899999999999999999999999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 164 (323)
|+.... ...|+.++.+++++|++.++++||++||.+.... ++|..
T Consensus 73 a~~~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~~~~-------------------------~~~~~ 117 (289)
T 3e48_A 73 PSIIHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYADQHN-------------------------NPFHM 117 (289)
T ss_dssp CCCCCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCCSTT-------------------------CCSTT
T ss_pred CCCCcc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccCCCCC-------------------------CCCcc
Confidence 986321 2358999999999999999999999999632110 11222
Q ss_pred HH--HHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC--CccCcCCCcccHHHHHHHHHHhh
Q 020608 165 SK--TLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD--TYENFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 165 sK--~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~i~v~D~a~~~~~~~ 240 (323)
++ ..+|..+ ++.|++++++||+.++|+.. ..+.....+... ..+++.++|+|++|+|++++.++
T Consensus 118 ~~~~~~~e~~~----~~~g~~~~ilrp~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l 185 (289)
T 3e48_A 118 SPYFGYASRLL----STSGIDYTYVRMAMYMDPLK--------PYLPELMNMHKLIYPAGDGRINYITRNDIARGVIAII 185 (289)
T ss_dssp HHHHHHHHHHH----HHHCCEEEEEEECEESTTHH--------HHHHHHHHHTEECCCCTTCEEEEECHHHHHHHHHHHH
T ss_pred chhHHHHHHHH----HHcCCCEEEEeccccccccH--------HHHHHHHHCCCEecCCCCceeeeEEHHHHHHHHHHHH
Confidence 22 3344333 35699999999999999732 122222222222 24566677999999999999999
Q ss_pred cCCCC-CccEEEEcCccCHHHHHHHHHHHCCCCCCCCCCCC---------CCCCC-------------ccccccchhH-h
Q 020608 241 ENPSA-CGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKD---------TQPGL-------------LRTKDGAKKL-M 296 (323)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~---------~~~~~-------------~~~~~~~~~~-~ 296 (323)
.++.. +..|+++++.+|+.|+++.+.+.+|.. +...... .+... .....+.+.+ +
T Consensus 186 ~~~~~~g~~~~~~~~~~s~~e~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 264 (289)
T 3e48_A 186 KNPDTWGKRYLLSGYSYDMKELAAILSEASGTE-IKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESNDFKQ 264 (289)
T ss_dssp HCGGGTTCEEEECCEEEEHHHHHHHHHHHHTSC-CEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTCCCCSHHHH
T ss_pred cCCCcCCceEEeCCCcCCHHHHHHHHHHHHCCc-eeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCccccCchHHH
Confidence 88765 446888877899999999999998752 1111000 00000 0122355566 7
Q ss_pred hhCCcccCHHHHHHHHH
Q 020608 297 DLGLQFIPMDQIIKDSV 313 (323)
Q Consensus 297 ~lG~~~~~~~~~l~~~~ 313 (323)
.+|+.|+++++.+++..
T Consensus 265 ~~G~~p~~~~~~~~~~~ 281 (289)
T 3e48_A 265 LVNDQPQTLQSFLQENI 281 (289)
T ss_dssp HHSSCCCCHHHHHHC--
T ss_pred HhCCCCCCHHHHHHHHH
Confidence 78999999999887654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=220.24 Aligned_cols=209 Identities=19% Similarity=0.131 Sum_probs=159.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|++|+|||||||||||++++++|+++|+ +|++++|+++...... ..+++++.+|++|.++++++++++|+
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc--------cCCceEEecCcCCHHHHHHHhcCCCE
Confidence 3568999999999999999999999999 9999999865422110 12578899999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
||||||..... ..+...+++|+.++.++++++++.++++||++||.+++. .. .+
T Consensus 88 vi~~ag~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~-~~----------------------~~ 141 (242)
T 2bka_A 88 GFCCLGTTRGK---AGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK-SS----------------------NF 141 (242)
T ss_dssp EEECCCCCHHH---HHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-TC----------------------SS
T ss_pred EEECCCccccc---CCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCC-CC----------------------cc
Confidence 99999874321 235678899999999999999998889999999985542 11 14
Q ss_pred chHHHHHHHHHHHHHHHHhCCc-cEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHh
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGL-DVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILV 239 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~-~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~ 239 (323)
.|+.+|..+|.+++ ..++ +++++|||.+|||..... .............+...+. ..++|++|+|++++.+
T Consensus 142 ~Y~~sK~~~e~~~~----~~~~~~~~~vrpg~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~dva~~~~~~ 213 (242)
T 2bka_A 142 LYLQVKGEVEAKVE----ELKFDRYSVFRPGVLLCDRQESR--PGEWLVRKFFGSLPDSWAS--GHSVPVVTVVRAMLNN 213 (242)
T ss_dssp HHHHHHHHHHHHHH----TTCCSEEEEEECCEEECTTGGGS--HHHHHHHHHHCSCCTTGGG--GTEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----hcCCCCeEEEcCceecCCCCCCc--HHHHHHHHhhcccCccccC--CcccCHHHHHHHHHHH
Confidence 59999999999875 4578 599999999999964321 1112222232222222222 3489999999999999
Q ss_pred hcCCCCCccEEEEc
Q 020608 240 YENPSACGRHLCVE 253 (323)
Q Consensus 240 ~~~~~~~~~~~~~~ 253 (323)
+.++...+.|++++
T Consensus 214 ~~~~~~~~~~~~~~ 227 (242)
T 2bka_A 214 VVRPRDKQMELLEN 227 (242)
T ss_dssp HTSCCCSSEEEEEH
T ss_pred HhCccccCeeEeeH
Confidence 99887777777754
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=218.09 Aligned_cols=241 Identities=17% Similarity=0.134 Sum_probs=175.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|+||||||+|+||++++++|+++|++|++++|+..... .....+.. ..++.++.+|++|.++++++++
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 88 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQ--KVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIA 88 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHH--HHHHHhCC-CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999988642221 22222322 2368999999999999888776
Q ss_pred ---CCCEEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++.. .+.++||++||..++.+...
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------ 162 (278)
T 2bgk_A 89 KHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEG------ 162 (278)
T ss_dssp HHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTT------
T ss_pred HcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCCC------
Confidence 789999999975321 12356678999999999999998754 35679999999966543320
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
....|+.+|.+.|.+++.++.+ +|++++++|||.++||...............+....+
T Consensus 163 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~---- 224 (278)
T 2bgk_A 163 --------------VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA---- 224 (278)
T ss_dssp --------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC----
T ss_pred --------------CCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhccc----
Confidence 0134999999999999998876 5899999999999999754322111122222222211
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEE-cCccCHHHHHHHHHHH
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGR-HLCV-EAISHYGDFVAKVAEL 268 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~-~~~~~~~e~~~~i~~~ 268 (323)
.....+++++|+|++++.++.... ..|+ +++. +...++.|+++.+.+.
T Consensus 225 ~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 225 NLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHG 276 (278)
T ss_dssp SSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSC
T ss_pred ccccccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhh
Confidence 112347899999999999997532 3354 6775 5678999999887654
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=224.32 Aligned_cols=224 Identities=16% Similarity=0.128 Sum_probs=169.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
+|+||||||||+||++++++|+++| ++|+++.|++++... ..+.. .+++++.+|++|++++.++++++|+|||
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~-~~l~~-----~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 78 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA-KELRL-----QGAEVVQGDQDDQVIMELALNGAYATFI 78 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH-HHHHH-----TTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH-HHHHH-----CCCEEEEecCCCHHHHHHHHhcCCEEEE
Confidence 5899999999999999999999998 999999998755322 11111 3688999999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+|+.... ...+.|+.++.++++++++.++++||++||. .+++.. ++.+ ...|+
T Consensus 79 ~a~~~~~--------~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~-~~~~~~---------~~~~---------~~~y~ 131 (299)
T 2wm3_A 79 VTNYWES--------CSQEQEVKQGKLLADLARRLGLHYVVYSGLE-NIKKLT---------AGRL---------AAAHF 131 (299)
T ss_dssp CCCHHHH--------TCHHHHHHHHHHHHHHHHHHTCSEEEECCCC-CHHHHT---------TTSC---------CCHHH
T ss_pred eCCCCcc--------ccchHHHHHHHHHHHHHHHcCCCEEEEEcCc-cccccC---------CCcc---------cCchh
Confidence 9975211 1245688999999999999999999997776 333221 1111 14599
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC----CCccCcCCCcccHHHHHHHHHHh
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT----DTYENFFMGSVHFKDVALAHILV 239 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~i~v~D~a~~~~~~ 239 (323)
.+|..+|.+++ ++|++++++||+.+||+........ ....|.. ...++...+|+|++|+|+++..+
T Consensus 132 ~sK~~~e~~~~----~~gi~~~ilrp~~~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~ 201 (299)
T 2wm3_A 132 DGKGEVEEYFR----DIGVPMTSVRLPCYFENLLSHFLPQ------KAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSL 201 (299)
T ss_dssp HHHHHHHHHHH----HHTCCEEEEECCEEGGGGGTTTCCE------ECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHH
T ss_pred hHHHHHHHHHH----HCCCCEEEEeecHHhhhchhhcCCc------ccCCCCEEEEEecCCCCccceecHHHHHHHHHHH
Confidence 99999999885 3589999999999999753211100 0112321 11355566799999999999999
Q ss_pred hcCCC--CCccEEEEcCccCHHHHHHHHHHHCCC
Q 020608 240 YENPS--ACGRHLCVEAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 240 ~~~~~--~~~~~~~~~~~~~~~e~~~~i~~~~~~ 271 (323)
+.++. .+..|+++++.+|+.|+++.+.+.+|.
T Consensus 202 l~~~~~~~g~~~~~~g~~~s~~e~~~~~~~~~g~ 235 (299)
T 2wm3_A 202 LKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRK 235 (299)
T ss_dssp HHSHHHHTTCEEECCSEEECHHHHHHHHHHHHSS
T ss_pred HcChhhhCCeEEEeeeccCCHHHHHHHHHHHHCC
Confidence 98642 344588877889999999999999864
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=228.05 Aligned_cols=227 Identities=16% Similarity=0.131 Sum_probs=168.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEcc-CCCHhHHHHHhcCCC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQID-LLDYDAIAAAVTGCT 79 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~d 79 (323)
|+|++|+|||||||||||++|+++|+++|++|+++.|++++... ..+.. ..+++++.+| ++|.+++.++++++|
T Consensus 1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-~~l~~----~~~v~~v~~D~l~d~~~l~~~~~~~d 75 (352)
T 1xgk_A 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA-EELQA----IPNVTLFQGPLLNNVPLMDTLFEGAH 75 (352)
T ss_dssp --CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH-HHHHT----STTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhH-HHHhh----cCCcEEEECCccCCHHHHHHHHhcCC
Confidence 66667899999999999999999999999999999998765421 22221 1368899999 999999999999999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEeccccc-ccCCCCCCCCccccCCCCCChhhhcc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISS-ITPSPKWPADKVKDEDCWTDEEYCRQ 157 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~ 157 (323)
+|||+++... .+.|..+ .+++++|++.+ +++|||+||.+. .++..
T Consensus 76 ~Vi~~a~~~~-----------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~--------------------- 122 (352)
T 1xgk_A 76 LAFINTTSQA-----------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGPW--------------------- 122 (352)
T ss_dssp EEEECCCSTT-----------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSSC---------------------
T ss_pred EEEEcCCCCC-----------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCCC---------------------
Confidence 9999986421 1346766 99999999988 999999999852 22110
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC---C-ccCcCCCcccH-HHH
Q 020608 158 NEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD---T-YENFFMGSVHF-KDV 232 (323)
Q Consensus 158 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~---~-~~~~~~~~i~v-~D~ 232 (323)
+.+.|+.+|..+|.+++ ..+++++++||+ +||+........... ......|... . .+++.++++|+ +|+
T Consensus 123 ~~~~y~~sK~~~E~~~~----~~gi~~~ivrpg-~~g~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dv 196 (352)
T 1xgk_A 123 PAVPMWAPKFTVENYVR----QLGLPSTFVYAG-IYNNNFTSLPYPLFQ-MELMPDGTFEWHAPFDPDIPLPWLDAEHDV 196 (352)
T ss_dssp CCCTTTHHHHHHHHHHH----TSSSCEEEEEEC-EEGGGCBSSSCSSCB-EEECTTSCEEEEESSCTTSCEEEECHHHHH
T ss_pred CCccHHHHHHHHHHHHH----HcCCCEEEEecc-eecCCchhccccccc-ccccCCCceEEeeccCCCCceeeEecHHHH
Confidence 11459999999999985 358999999986 688865322110000 0001233321 1 25566779999 999
Q ss_pred HHHHHHhhcCCC---CCccEEEEcCccCHHHHHHHHHHHCCC
Q 020608 233 ALAHILVYENPS---ACGRHLCVEAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 233 a~~~~~~~~~~~---~~~~~~~~~~~~~~~e~~~~i~~~~~~ 271 (323)
|++++.+++++. .++.||++++.+|+.|+++.+.+.+|.
T Consensus 197 a~ai~~~l~~~~~~~~g~~~~l~~~~~s~~e~~~~i~~~~G~ 238 (352)
T 1xgk_A 197 GPALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNR 238 (352)
T ss_dssp HHHHHHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCchhhCCeEEEEecCCCCHHHHHHHHHHHHCC
Confidence 999999998642 355699988889999999999998864
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=212.97 Aligned_cols=226 Identities=12% Similarity=0.080 Sum_probs=166.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|+||||||+|+||++++++|+++|++|++++|+.+... ...+.+...+.++.++.+|++|+++++++++
T Consensus 8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 85 (255)
T 1fmc_A 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN--HVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHH--HHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467799999999999999999999999999999999753222 2222332224578899999999999888876
Q ss_pred --CCCEEEEcccCCccC---CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVD---KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++. +.+.++||++||.+++.+...
T Consensus 86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 155 (255)
T 1fmc_A 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNIN---------- 155 (255)
T ss_dssp HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTT----------
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCC----------
Confidence 799999999975432 2344567889999999999999874 445689999999865543221
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
...|+.+|.+.|.+++.++.+. +++++++|||.+++|...... ..........+.+. .
T Consensus 156 -----------~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~~~------~ 216 (255)
T 1fmc_A 156 -----------MTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQHTPI------R 216 (255)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC--CHHHHHHHHHTCSS------C
T ss_pred -----------CcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhcc--ChHHHHHHHhcCCc------c
Confidence 1459999999999999988764 899999999999998533211 11223333333321 2
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCc-cEEEE-cCccCH
Q 020608 225 GSVHFKDVALAHILVYENPS--ACG-RHLCV-EAISHY 258 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~-~~~~~-~~~~~~ 258 (323)
.+++++|+|++++.++.... ..| .|+++ +..+|+
T Consensus 217 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 217 RLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred cCCCHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence 37799999999999997542 234 47885 444543
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=213.81 Aligned_cols=236 Identities=15% Similarity=0.139 Sum_probs=158.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhc---cCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL---EGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+ ...+.++.++.+|++|.++++++++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLE--ETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 81 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999743222 222222 2223468899999999999888876
Q ss_pred ----CCCEEEEcccCCccCC--------CCCchhhhhhHHHHHHHHHHHHHhhC----CcCEEEEeccccc-ccCCCCCC
Q 020608 77 ----GCTGVFHLASPCIVDK--------VEDPQNQLLNPAVKGTVNVLTAAKAL----GVKRVVVTSSISS-ITPSPKWP 139 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~v~~SS~~~-~~~~~~~~ 139 (323)
++|+||||||...... +.+.+...+++|+.++.++++++... + ++||++||.++ +.+.+.
T Consensus 82 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~-- 158 (278)
T 1spx_A 82 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATPD-- 158 (278)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCTT--
T ss_pred HHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCCCC--
Confidence 8999999999753321 34457788999999999999997543 5 79999999865 433221
Q ss_pred CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHH------HHHH
Q 020608 140 ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASML------MLLR 210 (323)
Q Consensus 140 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~------~~~~ 210 (323)
...|+.+|.+.+.+++.++.+ +|++++++|||.+++|........... ....
T Consensus 159 -------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~ 219 (278)
T 1spx_A 159 -------------------FPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMAT 219 (278)
T ss_dssp -------------------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHH
Confidence 134999999999999988766 589999999999999864321100000 0122
Q ss_pred HHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC---CCcc-EEEE-cCccCHHHHHHHHHHH
Q 020608 211 LLQGCTDTYENFFMGSVHFKDVALAHILVYENPS---ACGR-HLCV-EAISHYGDFVAKVAEL 268 (323)
Q Consensus 211 ~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~-~~~~-~~~~~~~e~~~~i~~~ 268 (323)
+.... +. ..+++++|+|++++.++..+. ..|+ +++. +...++.|+++.+.+.
T Consensus 220 ~~~~~----p~--~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~ 276 (278)
T 1spx_A 220 MKECV----PA--GVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKL 276 (278)
T ss_dssp HHHHC----TT--SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC-----------
T ss_pred HHhcC----CC--cCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHH
Confidence 21111 11 237899999999999987532 3355 6675 5578999999988764
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=208.61 Aligned_cols=226 Identities=15% Similarity=0.112 Sum_probs=163.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|+||||||+|+||++++++|+++|++|++++|+.+... ...+.+...+.++.++.+|++|.++++++++
T Consensus 10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMAT--KAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999743222 2222332224578999999999999888775
Q ss_pred --CCCEEEEcccCCc-cC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 --GCTGVFHLASPCI-VD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 --~~d~Vih~a~~~~-~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||... .. ...+.+...+++|+.++.++++++.. .+.+++|++||.+++.+.+..
T Consensus 88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------- 160 (260)
T 3awd_A 88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQ------- 160 (260)
T ss_dssp HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSS-------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCCCC-------
Confidence 7899999999754 11 12344678899999999999998753 356799999998655433210
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
+...|+.+|.+.|.+++.++.+ +|++++++|||.+++|....... .......+..+.+.
T Consensus 161 ------------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~~~----- 222 (260)
T 3awd_A 161 ------------QQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGME-KPELYDAWIAGTPM----- 222 (260)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHT-CHHHHHHHHHTCTT-----
T ss_pred ------------CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccC-ChHHHHHHHhcCCc-----
Confidence 0144999999999999998877 69999999999999986431000 11223333333221
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcCc
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCVEAI 255 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~~ 255 (323)
..+++++|+|++++.++.... ..|+ +++.++.
T Consensus 223 -~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 223 -GRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -CCCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 237899999999999987532 2444 6776543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=201.37 Aligned_cols=202 Identities=17% Similarity=0.129 Sum_probs=150.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+|+|||||||||++++++|+++|++|+++.|++++.. .. ...+++++.+|++|.+++.++++++|+|||
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~------~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~ 73 (206)
T 1hdo_A 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP------SE--GPRPAHVVVGDVLQAADVDKTVAGQDAVIV 73 (206)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC------SS--SCCCSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcc------cc--cCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 3489999999999999999999999999999999753211 11 134789999999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+|+.... .+ ..++|+.++.++++++++.++++||++||.+++.... ..+. + .+.|+
T Consensus 74 ~a~~~~~----~~---~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~----~~~~-------~------~~~y~ 129 (206)
T 1hdo_A 74 LLGTRND----LS---PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPT----KVPP-------R------LQAVT 129 (206)
T ss_dssp CCCCTTC----CS---CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTT----CSCG-------G------GHHHH
T ss_pred CccCCCC----CC---ccchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcc----cccc-------c------chhHH
Confidence 9986432 11 2358999999999999998889999999995443221 1100 1 15599
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
.+|..+|.+++ +.+++++++||+.+ ++......... ...+. +. .+++|++|+|++++.+++++
T Consensus 130 ~~K~~~e~~~~----~~~i~~~~lrp~~~-~~~~~~~~~~~------~~~~~----~~--~~~i~~~Dva~~~~~~~~~~ 192 (206)
T 1hdo_A 130 DDHIRMHKVLR----ESGLKYVAVMPPHI-GDQPLTGAYTV------TLDGR----GP--SRVISKHDLGHFMLRCLTTD 192 (206)
T ss_dssp HHHHHHHHHHH----HTCSEEEEECCSEE-ECCCCCSCCEE------ESSSC----SS--CSEEEHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHH----hCCCCEEEEeCCcc-cCCCCCcceEe------cccCC----CC--CCccCHHHHHHHHHHHhcCc
Confidence 99999999884 57899999999998 33321111000 00111 11 47999999999999999987
Q ss_pred CCCc-cEEEEcC
Q 020608 244 SACG-RHLCVEA 254 (323)
Q Consensus 244 ~~~~-~~~~~~~ 254 (323)
...| .|+++++
T Consensus 193 ~~~g~~~~i~~g 204 (206)
T 1hdo_A 193 EYDGHSTYPSHQ 204 (206)
T ss_dssp TTTTCEEEEECC
T ss_pred cccccceeeecc
Confidence 6544 4887653
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=217.66 Aligned_cols=239 Identities=14% Similarity=0.097 Sum_probs=169.3
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccCCCHhHHHHHhc----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
++++|+||||||+|+||++++++|+++|++|++++|+.+... +..+.+... +.++.++.+|++|.++++++++
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLK--ATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999753222 222222111 3478999999999998887765
Q ss_pred ---CCCEEEEcccCCcc----CCCCCchhhhhhHHHHHHHHHHHHHhh-----CCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIV----DKVEDPQNQLLNPAVKGTVNVLTAAKA-----LGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||.... ....+.+...+++|+.++.++++++.. .+.++||++||.+++.+...
T Consensus 101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------- 173 (302)
T 1w6u_A 101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGF------- 173 (302)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTT-------
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCCC-------
Confidence 46999999996533 124456788999999999999888743 34579999999866654321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+++.++.+ +|++++++|||.++++...............+..+.+
T Consensus 174 --------------~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p----- 234 (302)
T 1w6u_A 174 --------------VVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP----- 234 (302)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT-----
T ss_pred --------------cchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCC-----
Confidence 134999999999999999877 6999999999999998432111111111122223221
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEE-cCccCHHHHHHHHHHHC
Q 020608 222 FFMGSVHFKDVALAHILVYENPSA--CGR-HLCV-EAISHYGDFVAKVAELY 269 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~-~~~~~~~e~~~~i~~~~ 269 (323)
...+++++|+|++++.++..... .|+ +++. +..+++.++++.+.+..
T Consensus 235 -~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~ 285 (302)
T 1w6u_A 235 -CGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVT 285 (302)
T ss_dssp -TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCC
T ss_pred -cCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhc
Confidence 12377999999999999875332 344 7775 44567777777666554
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=206.09 Aligned_cols=211 Identities=19% Similarity=0.192 Sum_probs=161.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+||||||+|+||++++++|+++|++|++++|+..... ..++.++.+|++|+++++++++
T Consensus 25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 93 (260)
T 3un1_A 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA-----------DPDIHTVAGDISKPETADRIVREGIER 93 (260)
T ss_dssp HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS-----------STTEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999764321 2368899999999999888776
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++ ++.+.+++|++||..+..+....
T Consensus 94 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~-------- 165 (260)
T 3un1_A 94 FGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGM-------- 165 (260)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBTTC--------
T ss_pred CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCCCC--------
Confidence 799999999976432 244567889999999999999987 45666899999998554322211
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
+...|+.||.+.+.+++.++.++ |+++++++||.+++|..... .........+ .
T Consensus 166 -----------~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~------~~~~~~~~~p------~ 222 (260)
T 3un1_A 166 -----------PSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE------THSTLAGLHP------V 222 (260)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG------GHHHHHTTST------T
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH------HHHHHhccCC------C
Confidence 11459999999999999999886 89999999999999975321 1112222211 1
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPSACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~~ 254 (323)
..+.+++|+|++++.+.+.....|+ +++.++
T Consensus 223 ~r~~~~~dva~av~~L~~~~~itG~~i~vdGG 254 (260)
T 3un1_A 223 GRMGEIRDVVDAVLYLEHAGFITGEILHVDGG 254 (260)
T ss_dssp SSCBCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHhcccCCCCCcEEEECCC
Confidence 2367899999999999665555565 666543
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=204.46 Aligned_cols=221 Identities=18% Similarity=0.165 Sum_probs=165.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|+++.|+.. ....+..+.+...+.++.++.+|++|.++++++++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSK-EKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF 80 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999999999999999887542 22222233333335578999999999999888776
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||...... +.+.+...+++|+.++.++++++ ++.+.++||++||.+++.+.+..
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 151 (246)
T 3osu_A 81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQ--------- 151 (246)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC---------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCC---------
Confidence 7899999999764322 44567789999999999999998 44556799999999777655321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.||.+.+.+.+.++.+ +|+++++++||.+++|...... ......+..+.+. .
T Consensus 152 ------------~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~---~~~~~~~~~~~p~------~ 210 (246)
T 3osu_A 152 ------------ANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALS---DELKEQMLTQIPL------A 210 (246)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSC---HHHHHHHHTTCTT------C
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccC---HHHHHHHHhcCCC------C
Confidence 34999999999999988875 4899999999999998754322 2233333333321 2
Q ss_pred CcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 225 GSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
.+.+++|+|++++.++..... .|+ +++.++
T Consensus 211 r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG 243 (246)
T 3osu_A 211 RFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243 (246)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 367899999999999875432 354 666543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=207.32 Aligned_cols=218 Identities=19% Similarity=0.148 Sum_probs=160.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GC 78 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 78 (323)
++++|+||||||+|+||++++++|+++|++|++++|+.++.. +..... .+.+++.+|++|.++++++++ ++
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV--SLAKEC----PGIEPVCVDLGDWDATEKALGGIGPV 77 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHhc----cCCCcEEecCCCHHHHHHHHHHcCCC
Confidence 367789999999999999999999999999999998742221 111211 256778999999999999887 47
Q ss_pred CEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC----C-cCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 79 TGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL----G-VKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 79 d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
|+|||+||..... ...+.+...+++|+.++.++++++... + .++||++||..++.+...
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 145 (244)
T 1cyd_A 78 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPN------------ 145 (244)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTT------------
T ss_pred CEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCCC------------
Confidence 9999999975432 134567789999999999999987543 4 579999999866543321
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
...|+.+|.+.|.+++.++.+ .+++++++|||.++||....... ....+..+..+.+ ...+
T Consensus 146 ---------~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~~------~~~~ 209 (244)
T 1cyd_A 146 ---------LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA-DPEFARKLKERHP------LRKF 209 (244)
T ss_dssp ---------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTC-CHHHHHHHHHHST------TSSC
T ss_pred ---------cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcccccccc-CHHHHHHHHhcCC------ccCC
Confidence 134999999999999998877 58999999999999985321100 1122233333322 2458
Q ss_pred ccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 227 VHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
+|++|+|++++.+++.+. ..|+ +++.+
T Consensus 210 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 239 (244)
T 1cyd_A 210 AEVEDVVNSILFLLSDRSASTSGGGILVDA 239 (244)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSSEEEEST
T ss_pred CCHHHHHHHHHHHhCchhhcccCCEEEECC
Confidence 999999999999997543 2344 55544
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-29 Score=211.93 Aligned_cols=240 Identities=20% Similarity=0.178 Sum_probs=173.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCC---CCeEEEEccCCCHhHHHHHhc--
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGAD---TRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+...+ .++.++.+|++|.++++++++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLA--GAVQELEALGANGGAIRYEPTDITNEDETARAVDAV 85 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999998753322 2233333222 378899999999998887765
Q ss_pred -----CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCc
Q 020608 77 -----GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 -----~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+||||||.... ..+.+.+...+++|+.++.++++++.. .+.++||++||.+++.+....
T Consensus 86 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~---- 161 (281)
T 3svt_A 86 TAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWF---- 161 (281)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTC----
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCCCC----
Confidence 68999999997321 124456788999999999999998743 344599999999776554321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.||.+.+.+++.++.++ |+++++++||.+++|...... .............+
T Consensus 162 -----------------~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~p--- 220 (281)
T 3svt_A 162 -----------------GAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAIT-ESAELSSDYAMCTP--- 220 (281)
T ss_dssp -----------------THHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-TCHHHHHHHHHHCS---
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcc-cCHHHHHHHHhcCC---
Confidence 449999999999999988775 699999999999998542100 00111222222221
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEE-cCccC-HHHHHHHHHHHCCC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPSA--CGR-HLCV-EAISH-YGDFVAKVAELYPE 271 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~-~~~~~-~~e~~~~i~~~~~~ 271 (323)
...+.+++|+|++++.++..... .|+ +++. +...+ ..++++.+.+.++.
T Consensus 221 ---~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~ 274 (281)
T 3svt_A 221 ---LPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGR 274 (281)
T ss_dssp ---SSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCT
T ss_pred ---CCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCC
Confidence 12366899999999999975432 355 6775 44444 66788888777754
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=202.24 Aligned_cols=219 Identities=16% Similarity=0.082 Sum_probs=165.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+....... ...+ +.++.++.+|++|.++++++++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~--~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGA--AASV---GRGAVHHVVDLTNEVSVRALIDFTIDT 82 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHH--HHHH---CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH--HHHh---CCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999987654332 2222 3478899999999999888776
Q ss_pred --CCCEEEEcccCCcc------CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 --GCTGVFHLASPCIV------DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 --~~d~Vih~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||.... ..+.+.+...+++|+.++.++++++ ++.+.++||++||..++.+....
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~------ 156 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMS------ 156 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBCSSC------
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCCCCC------
Confidence 78999999997632 1244567889999999999999998 55666799999999766544321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.||.+.+.+++.++.+ +|+++++++||.+++|....... ......+....+.
T Consensus 157 ---------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~--~~~~~~~~~~~~~---- 215 (271)
T 3tzq_B 157 ---------------TAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLP--QPIVDIFATHHLA---- 215 (271)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---C--HHHHHHHHTTSTT----
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCC--HHHHHHHHhcCCC----
Confidence 34999999999999999887 68999999999999997542221 1222232222211
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|++++.++.... ..|+ +++.++
T Consensus 216 --~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 216 --GRIGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp --SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 226789999999999997543 2455 556544
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=208.11 Aligned_cols=223 Identities=14% Similarity=0.095 Sum_probs=147.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh-----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV----- 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----- 75 (323)
|++++|+||||||+|+||++++++|+++|++|++++|+.+... +....+...+.++.++.+|++|.+++++++
T Consensus 10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (266)
T 1xq1_A 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELN--ECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 87 (266)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998743222 222223222457889999999999888776
Q ss_pred ---cCCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccc
Q 020608 76 ---TGCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 76 ---~~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
.++|+|||+||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||.+++.+...
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------- 160 (266)
T 1xq1_A 88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASV------- 160 (266)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----------------
T ss_pred HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCCCC-------
Confidence 4789999999975332 134567788999999999999998 4456789999999866554321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+++.++.+. |++++++|||.+++|...... ............ +
T Consensus 161 --------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~----~- 219 (266)
T 1xq1_A 161 --------------GSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY--DDEFKKVVISRK----P- 219 (266)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc--CHHHHHHHHhcC----C-
Confidence 1459999999999999988774 899999999999998653211 001111111111 1
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+++++|+|++++.++.... ..|+ +++.++
T Consensus 220 -~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 254 (266)
T 1xq1_A 220 -LGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGG 254 (266)
T ss_dssp -----CCGGGGHHHHHHHTSGGGTTCCSCEEECCCC
T ss_pred -CCCCcCHHHHHHHHHHHcCccccCccCcEEEEcCC
Confidence 1237899999999999987532 2344 555443
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=207.18 Aligned_cols=230 Identities=19% Similarity=0.137 Sum_probs=164.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC----------cHHH-HHHHhhccCCCCCeEEEEccCCCHhHH
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS----------DERE-TAHLKALEGADTRLRLFQIDLLDYDAI 71 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 71 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+ +... .+..+.+...+.++.++.+|++|.+++
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 92 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL 92 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 56789999999999999999999999999999998421 2222 233333444456889999999999998
Q ss_pred HHHhc-------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCC-cCEEEEecccccccCC
Q 020608 72 AAAVT-------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALG-VKRVVVTSSISSITPS 135 (323)
Q Consensus 72 ~~~~~-------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~ 135 (323)
+++++ ++|+||||||...... +.+.+...+++|+.++.++++++. +.+ .++||++||..++.+.
T Consensus 93 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 172 (280)
T 3pgx_A 93 RELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKAT 172 (280)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccCC
Confidence 88765 7899999999864322 455678899999999999999973 222 4689999999776554
Q ss_pred CCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHH
Q 020608 136 PKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLL 212 (323)
Q Consensus 136 ~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~ 212 (323)
... ..|+.+|.+.+.+++.++.+ +|+++++++||.+++|..... .....+....
T Consensus 173 ~~~---------------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~ 229 (280)
T 3pgx_A 173 PGN---------------------GHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPE--AMMEIFARHP 229 (280)
T ss_dssp TTB---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHH--HHHHHHHHCG
T ss_pred CCc---------------------hhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchh--hhhhhhhcCc
Confidence 321 34999999999999999877 589999999999999875321 0111111100
Q ss_pred c--CCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcCc
Q 020608 213 Q--GCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEAI 255 (323)
Q Consensus 213 ~--g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~~ 255 (323)
. ......+.....+++++|+|++++.++.... ..|+ +++.++.
T Consensus 230 ~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 230 SFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277 (280)
T ss_dssp GGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTG
T ss_pred hhhhhhhhcccCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 0 0000111111248899999999999987543 3455 5565543
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=206.91 Aligned_cols=224 Identities=16% Similarity=0.165 Sum_probs=160.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.++.. +..+.+... +.++.++.+|++|.++++++++
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLH--EAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVR 80 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH--HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3466789999999999999999999999999999999743222 222222211 3468899999999999888776
Q ss_pred ----CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ----GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++. +.+.++||++||.+++.+...
T Consensus 81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 153 (263)
T 3ai3_A 81 SSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWY------- 153 (263)
T ss_dssp HHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCC-------
Confidence 7899999999754321 344677899999999999999874 345679999999966554321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc--------hhHHHHHHHHc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN--------ASMLMLLRLLQ 213 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~--------~~~~~~~~~~~ 213 (323)
...|+.+|.+.+.+++.++.+ +|++++++|||.+++|....... ........+..
T Consensus 154 --------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (263)
T 3ai3_A 154 --------------EPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVAD 219 (263)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHH
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHh
Confidence 134999999999999998877 58999999999999985321000 00111111111
Q ss_pred C-CCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 214 G-CTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 214 g-~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
. . ....+++++|+|++++.++..+. ..|+ +++.+
T Consensus 220 ~~~------p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdg 257 (263)
T 3ai3_A 220 EHA------PIKRFASPEELANFFVFLCSERATYSVGSAYFVDG 257 (263)
T ss_dssp HHC------TTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEEST
T ss_pred cCC------CCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECC
Confidence 1 1 11247899999999999997543 2344 66654
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=205.58 Aligned_cols=231 Identities=15% Similarity=0.132 Sum_probs=159.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+... ......+.+... ..++.++.+|++|.++++++++
T Consensus 21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 99 (281)
T 3v2h_A 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPD-EIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVA 99 (281)
T ss_dssp -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHH-HHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChH-HHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999885322 222222333222 4578999999999999888776
Q ss_pred ----CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ----GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||...... +.+.+...+++|+.++.++++++ ++.+.++||++||.+++.+....
T Consensus 100 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------ 173 (281)
T 3v2h_A 100 DRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFK------ 173 (281)
T ss_dssp HHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC------
T ss_pred HHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCCCc------
Confidence 7899999999764322 44567889999999999999997 34455799999999776554321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC----C
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT----D 217 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~----~ 217 (323)
..|+.||.+.+.+++.++.++ |+++++++||.+++|............ ........ .
T Consensus 174 ---------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~~ 237 (281)
T 3v2h_A 174 ---------------SAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQART-RGITEEQVINEVM 237 (281)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---------------------------
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhh-cCCCHHHHHHHHH
Confidence 349999999999999988774 899999999999998643221110000 00000000 0
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.....+++++|+|++++.++.... ..|+ +++.++
T Consensus 238 ~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG 277 (281)
T 3v2h_A 238 LKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGG 277 (281)
T ss_dssp --CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTT
T ss_pred HhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCC
Confidence 011122348899999999999997643 2455 556443
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=203.20 Aligned_cols=222 Identities=16% Similarity=0.072 Sum_probs=152.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEE-ecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHAT-VKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|++++|+||||||+|+||++++++|+++|++|+++ .|++.... +..+.+...+.++.++.+|++|.++++++++
T Consensus 1 M~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T 2hq1_A 1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLD--ATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAM 78 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHH--HHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHH--HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 78889999999999999999999999999999998 45543222 2222222224578999999999999888776
Q ss_pred ----CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ----GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++.. .+.++||++||.++.++.+.
T Consensus 79 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------- 151 (247)
T 2hq1_A 79 DAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAG------- 151 (247)
T ss_dssp HHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC----------------
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCC-------
Confidence 789999999975421 24566788999999999998888743 45679999999866665431
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+++.++.+. ++++++++||.+.++...... .........+.+
T Consensus 152 --------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~----- 209 (247)
T 2hq1_A 152 --------------QANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLP---DKVKEMYLNNIP----- 209 (247)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC---HHHHHHHHTTST-----
T ss_pred --------------CcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcc---hHHHHHHHhhCC-----
Confidence 1449999999999999988764 899999999999887432111 112222222221
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+++++|+|+++..++..+. ..|+ |+++++
T Consensus 210 -~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 244 (247)
T 2hq1_A 210 -LKRFGTPEEVANVVGFLASDDSNYITGQVINIDGG 244 (247)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CCCCCCHHHHHHHHHHHcCcccccccCcEEEeCCC
Confidence 1247899999999999887532 2344 777543
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=204.97 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=164.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc---------HHH-HHHHhhccCCCCCeEEEEccCCCHhHH
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD---------ERE-TAHLKALEGADTRLRLFQIDLLDYDAI 71 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 71 (323)
++++|++|||||+|+||++++++|+++|++|++++|++.. ... .+....+...+.++.++.+|++|.+++
T Consensus 7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL 86 (281)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 3678999999999999999999999999999999997431 222 222223333356789999999999998
Q ss_pred HHHhc-------CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCC
Q 020608 72 AAAVT-------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSP 136 (323)
Q Consensus 72 ~~~~~-------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~ 136 (323)
+++++ ++|+||||||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||..++.+..
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 166 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANF 166 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCT
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCCC
Confidence 88776 789999999976432 244567889999999999999996 334557999999997665443
Q ss_pred CCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc----------h
Q 020608 137 KWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN----------A 203 (323)
Q Consensus 137 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~----------~ 203 (323)
.. ..|+.+|.+.+.+.+.++.+ +|+++++++||.|++|....... .
T Consensus 167 ~~---------------------~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~ 225 (281)
T 3s55_A 167 AQ---------------------ASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKP 225 (281)
T ss_dssp TC---------------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------C
T ss_pred CC---------------------chhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhcccccccccc
Confidence 21 34999999999999999887 48999999999999997542100 0
Q ss_pred hHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 204 SMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 204 ~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
........... .......+++++|+|++++.++..... .|+ +++.++
T Consensus 226 ~~~~~~~~~~~----~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG 275 (281)
T 3s55_A 226 TLKDVESVFAS----LHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAG 275 (281)
T ss_dssp CHHHHHHHHHH----HCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred chhHHHHHHHh----hhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 00000000000 011124478999999999999986432 355 666543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=204.49 Aligned_cols=222 Identities=16% Similarity=0.118 Sum_probs=161.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.... .+....+ ..++.++.+|++|.++++++++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~--~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERA--RQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHh---CCCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999999999999864322 2222233 3468899999999999888776
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC----C-cCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL----G-VKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+||||||...... +.+.+...+++|+.++.++++++... + .++||++||.+++.+....
T Consensus 81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 152 (259)
T 4e6p_A 81 GGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALV-------- 152 (259)
T ss_dssp SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTB--------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCCCC--------
Confidence 7899999999754322 44667889999999999999987432 2 4699999999776654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC----c
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT----Y 219 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~----~ 219 (323)
..|+.+|.+.+.+++.++.++ |+++++++||.+++|.... ....+.......... .
T Consensus 153 -------------~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~~~~~~~~ 215 (259)
T 4e6p_A 153 -------------AIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDG----VDALFARYENRPRGEKKRLV 215 (259)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHH----HHHHHHHHHTCCTTHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhh----hhhhhhhhccCChHHHHHHH
Confidence 349999999999999998774 8999999999999986321 111111111111000 0
Q ss_pred --cCcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 220 --ENFFMGSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 220 --~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
......+.+++|+|++++.++..... .|+ +++.++
T Consensus 216 ~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG 255 (259)
T 4e6p_A 216 GEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGG 255 (259)
T ss_dssp HHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred hccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcC
Confidence 11223488999999999999874332 344 777543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=207.09 Aligned_cols=224 Identities=18% Similarity=0.138 Sum_probs=161.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|+||||||+|+||++++++|+++|++|++++|+. .....+....+...+.++.++.+|++|.++++++++
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS-SKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCc-hHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999842 111112222333234578899999999999888876
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccc-cCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSI-TPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~-~~~~~~~~~~~~~ 145 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++... + ++||++||.+++ .+...
T Consensus 96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~-------- 166 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMTGIPN-------- 166 (274)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCCSCCS--------
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccCCCCC--------
Confidence 789999999975331 234456789999999999999988654 4 699999998665 32211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCC-----------CCchhHHHHHHH
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPP-----------TLNASMLMLLRL 211 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~-----------~~~~~~~~~~~~ 211 (323)
...|+.+|.+.|.+++.++.+. +++++++|||.++++.... ... ........
T Consensus 167 -------------~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 232 (274)
T 1ja9_A 167 -------------HALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMP-QEKIDEGL 232 (274)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCC-HHHHHHHH
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCc-hHHHHHHH
Confidence 1349999999999999988774 8999999999999874220 000 01112222
Q ss_pred HcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCC--Cc-cEEEEcC
Q 020608 212 LQGCTDTYENFFMGSVHFKDVALAHILVYENPSA--CG-RHLCVEA 254 (323)
Q Consensus 212 ~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~-~~~~~~~ 254 (323)
..+. ....+++++|+|++++.++..+.. .| .|+++++
T Consensus 233 ~~~~------~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 233 ANMN------PLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp HHTS------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HhcC------CCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 2222 123488999999999999975432 34 4777654
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=203.16 Aligned_cols=219 Identities=20% Similarity=0.148 Sum_probs=156.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+...... ....+ +.++.++.+|++|.++++++++
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~--~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEE--PAAEL---GAAVRFRNADVTNEADATAALAFAKQ 77 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH--HHHHh---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999998754332 11122 3468899999999999888776
Q ss_pred ---CCCEEEEcccCCccC--------CCCCchhhhhhHHHHHHHHHHHHHhhC----------CcCEEEEecccccccCC
Q 020608 77 ---GCTGVFHLASPCIVD--------KVEDPQNQLLNPAVKGTVNVLTAAKAL----------GVKRVVVTSSISSITPS 135 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~~~~v~~SS~~~~~~~ 135 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++... +.++||++||.+++.+.
T Consensus 78 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~ 157 (257)
T 3tpc_A 78 EFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQ 157 (257)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC
T ss_pred HcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCC
Confidence 789999999976331 234567889999999999999998542 34689999999777655
Q ss_pred CCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHH
Q 020608 136 PKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLL 212 (323)
Q Consensus 136 ~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~ 212 (323)
... ..|+.||.+.+.+++.++.+ +|+++++++||.+.+|...... ......+.
T Consensus 158 ~~~---------------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~---~~~~~~~~ 213 (257)
T 3tpc_A 158 IGQ---------------------AAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMP---QDVQDALA 213 (257)
T ss_dssp TTC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC-----------------
T ss_pred CCC---------------------cchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCC---HHHHHHHH
Confidence 321 34999999999999988877 6899999999999998643211 01111111
Q ss_pred cCCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCcc-EEEEc
Q 020608 213 QGCTDTYENFFMGSVHFKDVALAHILVYENPSACGR-HLCVE 253 (323)
Q Consensus 213 ~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~ 253 (323)
... +. ...+.+++|+|.++..+++.....|+ +++.+
T Consensus 214 ~~~----p~-~~r~~~~~dva~~v~~l~s~~~itG~~i~vdG 250 (257)
T 3tpc_A 214 ASV----PF-PPRLGRAEEYAALVKHICENTMLNGEVIRLDG 250 (257)
T ss_dssp CCS----SS-SCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred hcC----CC-CCCCCCHHHHHHHHHHHcccCCcCCcEEEECC
Confidence 111 11 02377999999999999987655666 45543
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=201.07 Aligned_cols=221 Identities=18% Similarity=0.125 Sum_probs=160.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhc-cCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL-EGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
++|++|||||+|+||++++++|+++|++|++++|+.++.. +....+ ...+.++.++.+|++|.++++++++
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLE--ETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQF 78 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999999998743222 222222 2223468999999999999888776
Q ss_pred -CCCEEEEcccCCccCC-------CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 -GCTGVFHLASPCIVDK-------VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++. +.+.+++|++||.+++.+...
T Consensus 79 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------- 151 (250)
T 2cfc_A 79 GAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPG------- 151 (250)
T ss_dssp SCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-------
T ss_pred CCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCC-------
Confidence 7899999999753221 334577899999999988777763 345689999999966654321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+++.++.+. |++++++|||.+++|....... .......+..+.+
T Consensus 152 --------------~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~----- 211 (250)
T 2cfc_A 152 --------------RSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLD-QPELRDQVLARIP----- 211 (250)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHT-SHHHHHHHHTTCT-----
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccC-CHHHHHHHHhcCC-----
Confidence 1449999999999999988765 9999999999999986432000 1112223333221
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 222 FFMGSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
...+.+++|+|++++.++..+.. .|+ +++.++
T Consensus 212 -~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 246 (250)
T 2cfc_A 212 -QKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGA 246 (250)
T ss_dssp -TCSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred -CCCCcCHHHHHHHHHHHcCchhhcccCCEEEECCc
Confidence 12377999999999999976432 355 556543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=200.60 Aligned_cols=221 Identities=17% Similarity=0.117 Sum_probs=165.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+..... +....+...+.++.++.+|++|.++++++++
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (247)
T 3lyl_A 1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAE--KFENSMKEKGFKARGLVLNISDIESIQNFFAEIKA 78 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999753322 2223333334578999999999999888765
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++.. .+.+++|++||..++.+.+..
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------- 151 (247)
T 3lyl_A 79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQ------- 151 (247)
T ss_dssp TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC-------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCc-------
Confidence 579999999976432 24556788999999999999998743 345699999999776654321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.++....... ........+.+
T Consensus 152 --------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~---~~~~~~~~~~~------ 208 (247)
T 3lyl_A 152 --------------TNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTD---EQKSFIATKIP------ 208 (247)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCH---HHHHHHHTTST------
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccH---HHHHHHhhcCC------
Confidence 34999999999999988876 48999999999999987543221 11222222211
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 209 ~~~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdg 242 (247)
T 3lyl_A 209 SGQIGEPKDIAAAVAFLASEEAKYITGQTLHVNG 242 (247)
T ss_dssp TCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHhCCCcCCccCCEEEECC
Confidence 1337799999999999987543 2455 56654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=202.63 Aligned_cols=221 Identities=19% Similarity=0.157 Sum_probs=163.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCC-CCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGAD-TRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.++. .+..+.+...+ .++.++.+|++|.++++++++
T Consensus 6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (262)
T 3pk0_A 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADI--DACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAV 83 (262)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999975332 22233333323 578999999999999888765
Q ss_pred ----CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC----CcCEEEEecccccc-cCCCCCCCCcc
Q 020608 77 ----GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL----GVKRVVVTSSISSI-TPSPKWPADKV 143 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~v~~SS~~~~-~~~~~~~~~~~ 143 (323)
++|+||||||...... +.+.+...+++|+.++.++++++... +.+++|++||..+. .+.+.
T Consensus 84 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~------ 157 (262)
T 3pk0_A 84 EEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPG------ 157 (262)
T ss_dssp HHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCTT------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCC------
Confidence 7899999999764322 44567788999999999999987543 56799999998553 33221
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
...|+.||.+.+.+++.++.+ +|+++++++||.+++|...... ......+....+.
T Consensus 158 ---------------~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~---~~~~~~~~~~~p~--- 216 (262)
T 3pk0_A 158 ---------------WSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENG---EEYIASMARSIPA--- 216 (262)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTC---HHHHHHHHTTSTT---
T ss_pred ---------------ChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccC---HHHHHHHHhcCCC---
Confidence 144999999999999999887 5899999999999998533211 1223333332211
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
..+.+++|+|+++..++.... ..|+ +++.+
T Consensus 217 ---~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdG 249 (262)
T 3pk0_A 217 ---GALGTPEDIGHLAAFLATKEAGYITGQAIAVDG 249 (262)
T ss_dssp ---SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---CCCcCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 226789999999999987543 3455 55654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=200.22 Aligned_cols=223 Identities=16% Similarity=0.103 Sum_probs=161.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.|++|++|||||+|+||++++++|+++|++|++++|+.+. ..+....+...+.++.++.+|++|.++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEK--LEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999987532 223333444445688999999999999888765
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH-----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA-----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++ ++.+.+++|++||..++.+....
T Consensus 81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------- 153 (257)
T 3imf_A 81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGV------- 153 (257)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCTTC-------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCCCc-------
Confidence 789999999965331 245567889999999999999997 33445799999999766544321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.||.+.+.+.+.++.+ +|+++++++||.+.+|.................... +
T Consensus 154 --------------~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~----p- 214 (257)
T 3imf_A 154 --------------IHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSV----P- 214 (257)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTS----T-
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcC----C-
Confidence 34999999999998888754 489999999999999864322110000111111111 1
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 215 -~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 248 (257)
T 3imf_A 215 -LGRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDG 248 (257)
T ss_dssp -TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence 1237799999999999997543 2455 55644
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=204.16 Aligned_cols=233 Identities=18% Similarity=0.122 Sum_probs=166.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC----------cHHHHHHHhhccCCCCCeEEEEccCCCHhHH
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS----------DERETAHLKALEGADTRLRLFQIDLLDYDAI 71 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 71 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.. .....+....+...+.++.++.+|++|.+++
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 357899999999999999999999999999999998732 2222222222333345899999999999998
Q ss_pred HHHhc-------CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCC
Q 020608 72 AAAVT-------GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWP 139 (323)
Q Consensus 72 ~~~~~-------~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~ 139 (323)
+++++ ++|+||||||........+.+...+++|+.++.++++++.. .+ .++||++||.+++.+....
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~- 168 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSA- 168 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCCS-
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCccC-
Confidence 88776 78999999998755445667889999999999999999743 22 4699999999776544210
Q ss_pred CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHH-cCC
Q 020608 140 ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLL-QGC 215 (323)
Q Consensus 140 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~-~g~ 215 (323)
.+. ...|+.||.+.+.+++.++.++ |+++++++||.|++|..... .....+.... ...
T Consensus 169 -----------~~~-----~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~ 230 (278)
T 3sx2_A 169 -----------DPG-----SVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNE--FTREWLAKMAAATD 230 (278)
T ss_dssp -----------SHH-----HHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSH--HHHHHHHHHHHHCC
T ss_pred -----------CCC-----chHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhh--hHHHHHhhccchhh
Confidence 010 1449999999999999988774 79999999999999975421 1111121111 111
Q ss_pred C-CCccCc-CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 216 T-DTYENF-FMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 216 ~-~~~~~~-~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
. ...... ...+++++|+|++++.++.... ..|+ +++.+
T Consensus 231 ~~~~~~~~~p~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 273 (278)
T 3sx2_A 231 TPGAMGNAMPVEVLAPEDVANAVAWLVSDQARYITGVTLPVDA 273 (278)
T ss_dssp --CTTSCSSSCSSBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred hhhhhhhhcCcCcCCHHHHHHHHHHHhCcccccccCCEEeECC
Confidence 1 111111 1458899999999999987543 3455 55544
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=200.29 Aligned_cols=220 Identities=18% Similarity=0.143 Sum_probs=159.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---C
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---G 77 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~ 77 (323)
|++++|+||||||+|+||++++++|+++|++|++++|+.++.. +..+++ .+.+++.+|++|.++++++++ +
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLD--SLVREC----PGIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHS----TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHc----CCCCEEEEeCCCHHHHHHHHHHcCC
Confidence 3456789999999999999999999999999999998642211 122222 246778999999999999887 5
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC----C-cCEEEEecccccccCCCCCCCCccccCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL----G-VKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
+|+|||+||...... ..+.+...+++|+.++.++++++... + .++||++||..++.+...
T Consensus 77 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------- 145 (244)
T 3d3w_A 77 VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTN----------- 145 (244)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTT-----------
T ss_pred CCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCCC-----------
Confidence 799999999754321 34567789999999999999987542 4 579999999865543221
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
...|+.+|.+.|.+++.++.+ .+++++++|||.++++........ ......+..+.+ ...
T Consensus 146 ----------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~~~------~~~ 208 (244)
T 3d3w_A 146 ----------HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSD-PHKAKTMLNRIP------LGK 208 (244)
T ss_dssp ----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCS-TTHHHHHHHTCT------TCS
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccC-hHHHHHHHhhCC------CCC
Confidence 145999999999999998876 489999999999999853210000 011122222221 134
Q ss_pred cccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 226 SVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+++++|+|++++.++.... ..|+ |+++++
T Consensus 209 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 240 (244)
T 3d3w_A 209 FAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 7899999999999997542 2454 667543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=201.65 Aligned_cols=220 Identities=17% Similarity=0.084 Sum_probs=160.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+.... ..+.+.. .+.++.++.+|++|.++++++++
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKA--VAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL 82 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH--HHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHH--HHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999996432221 1122211 13468899999999999888876
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++ ++.+.++||++||..++++....
T Consensus 83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-------- 154 (248)
T 2pnf_A 83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQ-------- 154 (248)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCTTC--------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCCCC--------
Confidence 789999999975432 234466789999999998877765 34456899999998666654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+. +++++++|||.+++|...... ...........+ .
T Consensus 155 -------------~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~------~ 212 (248)
T 2pnf_A 155 -------------VNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLS---EEIKQKYKEQIP------L 212 (248)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC---HHHHHHHHHTCT------T
T ss_pred -------------chHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhcc---HHHHHHHHhcCC------C
Confidence 349999999999999887663 899999999999998643211 111222222221 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+++++|+|++++.++.... ..|+ |+++++
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 213 GRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 237899999999999987532 2344 666543
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=202.23 Aligned_cols=232 Identities=19% Similarity=0.078 Sum_probs=162.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+. ..+..+.+...+.++.++.+|++|.++++++++
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~--~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTE--VEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL 101 (283)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHH--HHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999987432 223334444445678999999999998887765
Q ss_pred ---CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||.... ..+.+.+...+++|+.++.++++++ ++.+.++||++||.++....+..
T Consensus 102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~------ 175 (283)
T 3v8b_A 102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTP------ 175 (283)
T ss_dssp HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCST------
T ss_pred HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCCCCC------
Confidence 78999999997532 1234567889999999999999998 44556799999998665422110
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHH-HcCCCCCcc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRL-LQGCTDTYE 220 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~-~~g~~~~~~ 220 (323)
....|+.+|.+.+.+++.++.+. |+++++++||.+.+|........... .... ........+
T Consensus 176 -------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~-~~~~~~~~~~~~~p 241 (283)
T 3v8b_A 176 -------------GATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEE-ETAIPVEWPKGQVP 241 (283)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHH-HHSCCCBCTTCSCG
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccch-hhhhhhhhhhhcCc
Confidence 01449999999999999998874 89999999999999865432111110 0000 000000011
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.....+..++|+|++++.++.... ..|+ +++.++
T Consensus 242 ~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 278 (283)
T 3v8b_A 242 ITDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGG 278 (283)
T ss_dssp GGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECcC
Confidence 111236789999999999987543 3455 445443
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=202.37 Aligned_cols=222 Identities=15% Similarity=0.106 Sum_probs=164.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+...+.++.++.+|++|.++++++++
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAE--AVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998653222 2233333335678999999999998887765
Q ss_pred --CCCEEEEcccCCccC---CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVD---KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++. +.+.++||++||.+++.+....
T Consensus 87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 157 (256)
T 3gaf_A 87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRM--------- 157 (256)
T ss_dssp HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCTTC---------
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCCCc---------
Confidence 789999999976432 2445678899999999999999973 4455799999999766544321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+.+|...... .......+....+ ..
T Consensus 158 ------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~p------~~ 217 (256)
T 3gaf_A 158 ------------ASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVL--TPEIERAMLKHTP------LG 217 (256)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHC--CHHHHHHHHTTCT------TS
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhcc--CHHHHHHHHhcCC------CC
Confidence 349999999999999988774 899999999999987432111 1112222222221 12
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.+.+++|+|++++.++.... ..|+ +++.++
T Consensus 218 r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG 250 (256)
T 3gaf_A 218 RLGEAQDIANAALFLCSPAAAWISGQVLTVSGG 250 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCHHHHHHHHHHHcCCcccCccCCEEEECCC
Confidence 36799999999999997533 2455 666543
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=201.68 Aligned_cols=228 Identities=15% Similarity=0.092 Sum_probs=163.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GC 78 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 78 (323)
++++|++|||||+|+||++++++|+++|++|++++|+..+. .+..+.+ ..+++++.+|++|.++++++++ ++
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~--~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~~~~i 87 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKG--EAAARTM---AGQVEVRELDLQDLSSVRRFADGVSGA 87 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHTTS---SSEEEEEECCTTCHHHHHHHHHTCCCE
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHHh---cCCeeEEEcCCCCHHHHHHHHHhcCCC
Confidence 46789999999999999999999999999999999974222 2222222 3578999999999999999887 56
Q ss_pred CEEEEcccCCccC--CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhc
Q 020608 79 TGVFHLASPCIVD--KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCR 156 (323)
Q Consensus 79 d~Vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 156 (323)
|+|||+||..... .+.+.+...+++|+.++.++++++.....++||++||.+++.+.... .....+..+..+.
T Consensus 88 D~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~--~~~~~~~~~~~~~--- 162 (291)
T 3rd5_A 88 DVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINL--EDLNWRSRRYSPW--- 162 (291)
T ss_dssp EEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCS--SCTTCSSSCCCHH---
T ss_pred CEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCc--ccccccccCCCCc---
Confidence 9999999976432 25677889999999999999999988777799999999776654321 1111222222222
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhC---C--ccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHH
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKEK---G--LDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKD 231 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D 231 (323)
..|+.||.+.+.+++.++.++ | +++++++||.|.++........ ....+ ... + ..+...+++|
T Consensus 163 ---~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~---~~~~~-~~~----~-~~~~~~~~~~ 230 (291)
T 3rd5_A 163 ---LAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRK---LGDAL-MSA----A-TRVVATDADF 230 (291)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-----------------------------CHHHHH
T ss_pred ---chHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchH---HHHHH-HHH----H-HHHHhCCHHH
Confidence 459999999999999888774 4 9999999999999865432110 00010 000 0 0111335999
Q ss_pred HHHHHHHhhcCCCCCccEEE
Q 020608 232 VALAHILVYENPSACGRHLC 251 (323)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~ 251 (323)
+|.+++.++..+...|+|..
T Consensus 231 ~A~~~~~l~~~~~~~G~~~~ 250 (291)
T 3rd5_A 231 GARQTLYAASQDLPGDSFVG 250 (291)
T ss_dssp HHHHHHHHHHSCCCTTCEEE
T ss_pred HHHHHHHHHcCCCCCCceeC
Confidence 99999999988766777653
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-27 Score=199.16 Aligned_cols=225 Identities=19% Similarity=0.136 Sum_probs=161.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh-----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV----- 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----- 75 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+...+.++.++.+|++|.+++++++
T Consensus 5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELN--DCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN 82 (260)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4467799999999999999999999999999999998753222 222233222447889999999999888776
Q ss_pred ---cCCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccc
Q 020608 76 ---TGCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 76 ---~~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
.++|+|||+||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||.+++.+.+.
T Consensus 83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 155 (260)
T 2ae2_A 83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPY------- 155 (260)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTT-------
T ss_pred HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCC-------
Confidence 4689999999975321 234567889999999999999998 3456689999999866543321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC--CchhHHHHHHHHcCCCCCc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT--LNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~--~~~~~~~~~~~~~g~~~~~ 219 (323)
...|+.+|.+.+.+++.++.+. |+++++++||.+.+|..... .......+..+....+
T Consensus 156 --------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--- 218 (260)
T 2ae2_A 156 --------------EAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA--- 218 (260)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST---
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCC---
Confidence 1349999999999999998775 89999999999998742110 0000111112222211
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+++++|+|++++.++.... ..|+ +++.++
T Consensus 219 ---~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 253 (260)
T 2ae2_A 219 ---LRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 253 (260)
T ss_dssp ---TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 1237899999999999987532 2455 556543
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=203.29 Aligned_cols=220 Identities=20% Similarity=0.149 Sum_probs=156.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCC-------CCeEEEEccCCCHhHHHHHh
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGAD-------TRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~ 75 (323)
+++|+||||||+|+||++++++|+++|++|++++|+.+.. .+..+.+...+ .++.++.+|++|.+++++++
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 82 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAA--QETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL 82 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHH--HHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence 5678999999999999999999999999999999874322 22223332222 46889999999999888777
Q ss_pred cC-------C-CEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC----C-cCEEEEecccccccCCCCC
Q 020608 76 TG-------C-TGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL----G-VKRVVVTSSISSITPSPKW 138 (323)
Q Consensus 76 ~~-------~-d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~ 138 (323)
++ + |+|||+||..... .+.+.+...+++|+.++.++++++... + .++||++||..++++...
T Consensus 83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~- 161 (264)
T 2pd6_A 83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVG- 161 (264)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCTT-
T ss_pred HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCCC-
Confidence 63 4 9999999975432 244567889999999999999997543 3 469999999876665431
Q ss_pred CCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC
Q 020608 139 PADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC 215 (323)
Q Consensus 139 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 215 (323)
...|+.+|.+.+.+++.++.+ .|++++++|||.+++|..... .......+..+.
T Consensus 162 --------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~ 218 (264)
T 2pd6_A 162 --------------------QTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKV---PQKVVDKITEMI 218 (264)
T ss_dssp --------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-------------CTGGGC
T ss_pred --------------------ChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhc---CHHHHHHHHHhC
Confidence 134999999999999998877 699999999999999864321 001111111111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+ ...+++++|+|++++.++.... ..|+ +++.++
T Consensus 219 ----~--~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 254 (264)
T 2pd6_A 219 ----P--MGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGG 254 (264)
T ss_dssp ----T--TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----C--CCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 1 1237899999999999987532 3344 556543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=197.44 Aligned_cols=219 Identities=18% Similarity=0.139 Sum_probs=162.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+. ....++.+|++|.++++++++
T Consensus 5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (248)
T 3op4_A 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQ--AISDYLG---DNGKGMALNVTNPESIEAVLKAITD 79 (248)
T ss_dssp TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH--HHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHhc---ccceEEEEeCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999998743222 2222222 257889999999999888776
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||...... +.+.+...+++|+.++.++++++.. .+.++||++||.++..+....
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~------- 152 (248)
T 3op4_A 80 EFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQ------- 152 (248)
T ss_dssp HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC-------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCC-------
Confidence 7899999999764322 4557788999999999999999743 455799999999777655321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+.+.++.++ |+++++++||.+.+|....... ..........+
T Consensus 153 --------------~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~~p------ 209 (248)
T 3op4_A 153 --------------ANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALND---EQRTATLAQVP------ 209 (248)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCH---HHHHHHHHTCT------
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCH---HHHHHHHhcCC------
Confidence 349999999999999888764 8999999999999986543221 12222222221
Q ss_pred CCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 223 FMGSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
...+.+++|+|++++.++..... .|+ +++.++
T Consensus 210 ~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdgG 244 (248)
T 3op4_A 210 AGRLGDPREIASAVAFLASPEAAYITGETLHVNGG 244 (248)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence 12367899999999999875432 455 556543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=196.03 Aligned_cols=229 Identities=18% Similarity=0.096 Sum_probs=167.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|+|++|++|||||++.||+++++.|+++|++|++.+|+.+ ...+..+++...+.++.++.+|++|+++++++++
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~--~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLED--RLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999998643 2233344454446689999999999999887765
Q ss_pred ---CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|++|||||.... ..+.+.|+..+++|+.++..+.+++. +.+-+++|++||.++..+.+..
T Consensus 81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~~------ 154 (254)
T 4fn4_A 81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAG------ 154 (254)
T ss_dssp HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSSSC------
T ss_pred HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCCCC------
Confidence 68999999996432 12556789999999999999998873 3455799999999776654321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.....+.+.++.+. |++++.|.||.+-.|.................+..+ +.
T Consensus 155 ---------------~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~---~~ 216 (254)
T 4fn4_A 155 ---------------APYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMS---LS 216 (254)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHT---TC
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCC---CC
Confidence 349999999999999888774 899999999999988643322211111112111111 10
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcCccC
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHLCVEAISH 257 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~~~~ 257 (323)
+ .+..++|+|.+++.++.... -.|+.+..+..+|
T Consensus 217 ~--R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG~t 252 (254)
T 4fn4_A 217 S--RLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLT 252 (254)
T ss_dssp C--CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred C--CCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCCcc
Confidence 1 14578999999999997543 2455444443333
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=212.67 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=163.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc--HHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD--ERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
|+ +||+|+|||||||||++++++|+++|++|+++.|+.+. ....+.+..+. ..+++++.+|++|++++.++++++
T Consensus 1 M~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~l~~~~~~~ 77 (313)
T 1qyd_A 1 MD-KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDALKQV 77 (313)
T ss_dssp -C-CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHHTTC
T ss_pred CC-CCCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH--hCCeEEEeCCCCCHHHHHHHHhCC
Confidence 54 36899999999999999999999999999999998643 22222222222 247899999999999999999999
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhhhcc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQ 157 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 157 (323)
|+|||+++.... ..|+.++.+++++|++.+ +++||+ |+. .... ... +.+..|.
T Consensus 78 d~vi~~a~~~~~-----------~~~~~~~~~l~~aa~~~g~v~~~v~-S~~---g~~~----~~~---~~~~~p~---- 131 (313)
T 1qyd_A 78 DVVISALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLP-SEF---GMDP----DIM---EHALQPG---- 131 (313)
T ss_dssp SEEEECCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEEC-SCC---SSCT----TSC---CCCCSST----
T ss_pred CEEEECCccccc-----------hhhHHHHHHHHHHHHhcCCCceEEe-cCC---cCCc----ccc---ccCCCCC----
Confidence 999999986422 125678899999999998 999985 432 1111 110 1111110
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC-Cc--cCcCCCcccHHHHHH
Q 020608 158 NEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD-TY--ENFFMGSVHFKDVAL 234 (323)
Q Consensus 158 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~-~~--~~~~~~~i~v~D~a~ 234 (323)
.+.| .+|..+|.+++ +.+++++++||+.++|+.......... .....+... .. ++..++++|++|+|+
T Consensus 132 -~~~y-~sK~~~e~~~~----~~g~~~~ilrp~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~i~~~Dva~ 202 (313)
T 1qyd_A 132 -SITF-IDKRKVRRAIE----AASIPYTYVSSNMFAGYFAGSLAQLDG---HMMPPRDKVLIYGDGNVKGIWVDEDDVGT 202 (313)
T ss_dssp -THHH-HHHHHHHHHHH----HTTCCBCEEECCEEHHHHTTTSSCTTC---CSSCCSSEECCBTTSCSEEEEECHHHHHH
T ss_pred -cchH-HHHHHHHHHHH----hcCCCeEEEEeceeccccccccccccc---cccCCCCeEEEeCCCCceEEEEEHHHHHH
Confidence 1348 99999998874 568999999999998853221110000 000111111 12 344567999999999
Q ss_pred HHHHhhcCCCC-CccEEE-E-cCccCHHHHHHHHHHHCCC
Q 020608 235 AHILVYENPSA-CGRHLC-V-EAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~-~-~~~~~~~e~~~~i~~~~~~ 271 (323)
+++.++.++.. ++.|++ + ++.+|+.|+++.+.+.+|.
T Consensus 203 ~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 242 (313)
T 1qyd_A 203 YTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ 242 (313)
T ss_dssp HHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHhCcccCCceEEEeCCCCccCHHHHHHHHHHhcCC
Confidence 99999987654 334665 4 4689999999999999874
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=201.41 Aligned_cols=223 Identities=16% Similarity=0.110 Sum_probs=158.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCe-EEEEccCCCHhHHHHHh----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRL-RLFQIDLLDYDAIAAAV---- 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~---- 75 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.++.. +..+.+ +.++ .++.+|++|.+++++++
T Consensus 7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (254)
T 2wsb_A 7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALD--RAAQEL---GAAVAARIVADVTDAEAMTAAAAEAE 81 (254)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHH---GGGEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHh---cccceeEEEEecCCHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999743222 222222 1256 88999999999888776
Q ss_pred --cCCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 76 --TGCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 76 --~~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
.++|+|||+||...... ..+.+...+++|+.++.++++++ ++.+.++||++||.+++.+.+..
T Consensus 82 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~------- 154 (254)
T 2wsb_A 82 AVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQ------- 154 (254)
T ss_dssp HHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSS-------
T ss_pred hhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCCCC-------
Confidence 47899999999754322 23446788999999988887775 34456899999998665543211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
+...|+.+|.+.+.+++.++.+. |++++++|||.+++|..... .........+....+
T Consensus 155 ------------~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~------ 215 (254)
T 2wsb_A 155 ------------FASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKM-RERPELFETWLDMTP------ 215 (254)
T ss_dssp ------------CBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHH-HTCHHHHHHHHHTST------
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcc-ccChHHHHHHHhcCC------
Confidence 01449999999999999988774 89999999999999853210 000112223333221
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+++++|+|++++.++.... ..|+ +++.++
T Consensus 216 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 216 MGRCGEPSEIAAAALFLASPAASYVTGAILAVDGG 250 (254)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 1237899999999999986532 3455 556554
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-27 Score=197.71 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=160.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+||||||+|+||++++++|+++|++|++++|+....... .+.+ +.++.++.+|++|.++++++++
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~--~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ--AKKL---GNNCVFAPADVTSEKDVQTALALAKG 82 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH--HHHH---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHH--HHHh---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 567789999999999999999999999999999999987544322 2222 2478999999999999888876
Q ss_pred ---CCCEEEEcccCCccC----------CCCCchhhhhhHHHHHHHHHHHHHhhC----------CcCEEEEeccccccc
Q 020608 77 ---GCTGVFHLASPCIVD----------KVEDPQNQLLNPAVKGTVNVLTAAKAL----------GVKRVVVTSSISSIT 133 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~~~~v~~SS~~~~~ 133 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++... +.++||++||..++.
T Consensus 83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 162 (265)
T 2o23_A 83 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE 162 (265)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred HCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC
Confidence 799999999975432 233457789999999999999997543 567999999997665
Q ss_pred CCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHH
Q 020608 134 PSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLR 210 (323)
Q Consensus 134 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~ 210 (323)
+... ...|+.+|.+.+.+++.++.+ .++++++++||.+.++...... ......
T Consensus 163 ~~~~---------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~ 218 (265)
T 2o23_A 163 GQVG---------------------QAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLP---EKVCNF 218 (265)
T ss_dssp CCTT---------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------CH
T ss_pred CCCC---------------------CchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccC---HHHHHH
Confidence 4321 134999999999999888776 4899999999999998643210 001111
Q ss_pred HHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCcc-EEEEc
Q 020608 211 LLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACGR-HLCVE 253 (323)
Q Consensus 211 ~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~ 253 (323)
.....+ . ...+++++|+|++++.+++.....|+ +.+.+
T Consensus 219 ~~~~~~----~-~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdg 257 (265)
T 2o23_A 219 LASQVP----F-PSRLGDPAEYAHLVQAIIENPFLNGEVIRLDG 257 (265)
T ss_dssp HHHTCS----S-SCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred HHHcCC----C-cCCCCCHHHHHHHHHHHhhcCccCceEEEECC
Confidence 111111 1 02367999999999999986655566 55543
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=205.77 Aligned_cols=237 Identities=18% Similarity=0.134 Sum_probs=158.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc--HHHHHHHh-hccCCCCCeEEEEccCCCHhHHHHHhc-
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD--ERETAHLK-ALEGADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
|+|++|++|||||+|+||++++++|+++|++|+++.|+... ....+.+. .+...+.++.++.+|++|.++++++++
T Consensus 1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 78888999999999999999999999999999999987422 22222222 122224578999999999999888776
Q ss_pred ------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCc
Q 020608 77 ------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+||||||...... +.+.+...+++|+.|+.++++++ ++.+.+++|++||.++......
T Consensus 81 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~----- 155 (324)
T 3u9l_A 81 IIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPP----- 155 (324)
T ss_dssp HHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCCS-----
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCCC-----
Confidence 7999999999754322 44567788999999999999998 5556789999999966543221
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCC
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCT 216 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~ 216 (323)
....|+.||.+.+.+++.++.+ +|+++++++||.+.++...... ...............
T Consensus 156 ---------------~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (324)
T 3u9l_A 156 ---------------YLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPN 220 (324)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHHHHHTTT
T ss_pred ---------------cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHhhccccc
Confidence 0134999999999999998877 5999999999999876432110 000111111111111
Q ss_pred CCccCc--------CCCcccHHHHHHHHHHhhcCCCC--CccEEEEcCccC
Q 020608 217 DTYENF--------FMGSVHFKDVALAHILVYENPSA--CGRHLCVEAISH 257 (323)
Q Consensus 217 ~~~~~~--------~~~~i~v~D~a~~~~~~~~~~~~--~~~~~~~~~~~~ 257 (323)
...+.. ..+..+++|+|.+++.+++.+.. ...+.+++....
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~~~~~~~~~~gp~~~~ 271 (324)
T 3u9l_A 221 AGLGEEIKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDG 271 (324)
T ss_dssp TTHHHHHHHHHHHTSCTTCCTHHHHHHHHHHHTSCTTCCCSEEEECTTCCS
T ss_pred cCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeCCcchH
Confidence 110100 01135889999999999987643 223455554444
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-28 Score=197.67 Aligned_cols=193 Identities=17% Similarity=0.107 Sum_probs=149.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~Vi 82 (323)
|+||||||+|+||++++++|+++ +|++++|++.+.. .....+. . +++.+|++|+++++++++ ++|+||
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~--~~~~~~~----~-~~~~~D~~~~~~~~~~~~~~~~id~vi 71 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALA--ELAREVG----A-RALPADLADELEAKALLEEAGPLDLLV 71 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHH--HHHHHHT----C-EECCCCTTSHHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHH--HHHHhcc----C-cEEEeeCCCHHHHHHHHHhcCCCCEEE
Confidence 68999999999999999999988 9999998642221 1122221 1 788999999999999988 899999
Q ss_pred EcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 83 HLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 83 h~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
|+||..... ...+++...+++|+.++.++++++++.+.++||++||.+++.+...
T Consensus 72 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~~~~--------------------- 130 (207)
T 2yut_A 72 HAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQVPG--------------------- 130 (207)
T ss_dssp ECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHSSTT---------------------
T ss_pred ECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccCCCC---------------------
Confidence 999975432 2456788899999999999999997767789999999966654321
Q ss_pred CCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALA 235 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~ 235 (323)
...|+.+|.+.|.+++.++.+ +|++++++|||.++++.... .+ .....+++++|+|++
T Consensus 131 ~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~~-------------~~------~~~~~~~~~~dva~~ 191 (207)
T 2yut_A 131 FAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAP-------------LG------GPPKGALSPEEAARK 191 (207)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGGG-------------GT------SCCTTCBCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCccc-------------cC------CCCCCCCCHHHHHHH
Confidence 145999999999999998877 59999999999999975110 11 122558999999999
Q ss_pred HHHhhcCCCCCc
Q 020608 236 HILVYENPSACG 247 (323)
Q Consensus 236 ~~~~~~~~~~~~ 247 (323)
++.+++++..+.
T Consensus 192 ~~~~~~~~~~~~ 203 (207)
T 2yut_A 192 VLEGLFREPVPA 203 (207)
T ss_dssp HHHHHC--CCCS
T ss_pred HHHHHhCCCCcc
Confidence 999998766543
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=200.69 Aligned_cols=223 Identities=16% Similarity=0.167 Sum_probs=157.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.++||++|||||+|+||++++++|+++|++|+++.|+.... .....+.+...+.++.++.+|++|.++++++++
T Consensus 4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTA-METMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999998875321 112222222234578999999999999888776
Q ss_pred --CCCEEEEcccCCcc------CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 --GCTGVFHLASPCIV------DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 --~~d~Vih~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||.... ....+.+...+++|+.++.++++++ ++.+.+++|++||.++....+. +
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~-~----- 156 (264)
T 3i4f_A 83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGW-I----- 156 (264)
T ss_dssp HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCCCC-T-----
T ss_pred hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccCCC-C-----
Confidence 78999999994211 1244567889999999999999998 5556679999999843311110 0
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
....|+.+|.+.+.+++.++.+ .|+++++++||.+++|...... .......... .+
T Consensus 157 -------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~----~p- 215 (264)
T 3i4f_A 157 -------------YRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATI---QEARQLKEHN----TP- 215 (264)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCH---HHHHHC-----------
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhcc---HHHHHHHhhc----CC-
Confidence 1145999999999999998877 5899999999999998654321 1111111111 11
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 216 -~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdG 249 (264)
T 3i4f_A 216 -IGRSGTGEDIARTISFLCEDDSDMITGTIIEVTG 249 (264)
T ss_dssp ---CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred -CCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcC
Confidence 1236789999999999997543 2455 56644
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=204.03 Aligned_cols=224 Identities=18% Similarity=0.112 Sum_probs=161.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+...+.++.++.+|++|.++++++++
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 96 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLR--TTLKELREAGVEADGRTCDVRSVPEIEALVAAVVER 96 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999753222 2222332224578899999999999887766
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC------CcCEEEEecccccccCCCCCCCCccc
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL------GVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++... +.++||++||.+++++...
T Consensus 97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------- 169 (277)
T 2rhc_B 97 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVH------- 169 (277)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCTT-------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCCC-------
Confidence 689999999975332 134457889999999999999997654 5579999999966654321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCch--h------HHHHHHHHc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNA--S------MLMLLRLLQ 213 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~--~------~~~~~~~~~ 213 (323)
...|+.+|.+.+.+++.++.+ .|+++++++||.+++|........ . .........
T Consensus 170 --------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (277)
T 2rhc_B 170 --------------AAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITA 235 (277)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHh
Confidence 134999999999999998876 489999999999998742110000 0 001111111
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.. ....+++++|+|++++.++..+. ..|+ +++.++
T Consensus 236 ~~------p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG 273 (277)
T 2rhc_B 236 RV------PIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 273 (277)
T ss_dssp HS------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cC------CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 11 11237899999999999987542 2444 566544
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=200.66 Aligned_cols=222 Identities=14% Similarity=0.099 Sum_probs=159.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
|++|++|||||+|+||++++++|+++|++|++++|+.. ... .+.+...+.++.++.+|++|.++++++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-~~~---~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP-APA---LAEIARHGVKAVHHPADLSDVAQIEALFALAEREF 77 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC-HHH---HHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch-HHH---HHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999765 222 22222224568889999999999988877
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++ ++.+.++||++||.+++.+.+.
T Consensus 78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 147 (255)
T 2q2v_A 78 GGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTG---------- 147 (255)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCCCC----------
Confidence 799999999975432 134567889999999888777765 4566789999999966654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHH---H----HHHHcCCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLM---L----LRLLQGCTD 217 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~---~----~~~~~g~~~ 217 (323)
...|+.+|...+.+.+.++.+. |+++++++||.+++|............ . ..+....
T Consensus 148 -----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (255)
T 2q2v_A 148 -----------KAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEK-- 214 (255)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTTT--
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhcc--
Confidence 1349999999999999998774 899999999999998532100000000 0 1110111
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.....+++++|+|++++.++.... ..|+ +++.++
T Consensus 215 ---~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 251 (255)
T 2q2v_A 215 ---QPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGG 251 (255)
T ss_dssp ---CTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCC
Confidence 112347899999999999987543 2354 566543
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-29 Score=210.03 Aligned_cols=227 Identities=18% Similarity=0.112 Sum_probs=155.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----CCCE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----GCTG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~ 80 (323)
||+||||||+||||++++++|+++|++|++++|++++... .+.+|++|.++++++++ ++|+
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~D~~~~~~~~~~~~~~~~~~d~ 65 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA---------------DLSTPGGRETAVAAVLDRCGGVLDG 65 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc---------------cccCCcccHHHHHHHHHHcCCCccE
Confidence 4799999999999999999999999999999997643210 15789999999888886 8999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC----CcCEEEEecccccccCCCCCCCCccccCC-------CC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL----GVKRVVVTSSISSITPSPKWPADKVKDED-------CW 149 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~e~-------~~ 149 (323)
|||+||.... ..++...+++|+.++.++++++.+. +.+++|++||.+++.+... ..+..|. .+
T Consensus 66 vi~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---~~~~~~~~~~~~~~~~ 139 (255)
T 2dkn_A 66 LVCCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAA---ELPMVEAMLAGDEARA 139 (255)
T ss_dssp EEECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGG---GCHHHHHHHHTCHHHH
T ss_pred EEECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecccccccccc---ccchhhhhcccchhhh
Confidence 9999997531 3567889999999999999987543 5689999999976654321 1111110 00
Q ss_pred CCh-hhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 150 TDE-EYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 150 ~~~-~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
... .....+.+.|+.+|.+.|.+++.++.+ .|++++++|||.++||........ .......... .+ ....
T Consensus 140 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~~--~~~~~~~~~~---~~-~~~~ 213 (255)
T 2dkn_A 140 IELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKAD--PRYGESTRRF---VA-PLGR 213 (255)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHHC--TTTHHHHHSC---CC-TTSS
T ss_pred hhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhcccc--hhhHHHHHHH---HH-HhcC
Confidence 000 000011256999999999999988766 699999999999999853110000 0000111100 01 2335
Q ss_pred cccHHHHHHHHHHhhcCC--CCCc-cEEEEc-CccCH
Q 020608 226 SVHFKDVALAHILVYENP--SACG-RHLCVE-AISHY 258 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~--~~~~-~~~~~~-~~~~~ 258 (323)
++|++|+|++++.++..+ ...| .|++++ ..+++
T Consensus 214 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~ 250 (255)
T 2dkn_A 214 GSEPREVAEAIAFLLGPQASFIHGSVLFVDGGMDALM 250 (255)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccceeeEEEecCCeEeee
Confidence 899999999999999865 2334 477754 34444
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=199.11 Aligned_cols=225 Identities=17% Similarity=0.136 Sum_probs=157.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh-----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV----- 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----- 75 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+...+.++.++.+|++|.+++++++
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELD--ECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH 94 (273)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3466799999999999999999999999999999999753222 222233222457889999999999888776
Q ss_pred ---cCCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 76 ---TGCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 76 ---~~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
.++|+|||+||...... ..+.+...+++|+.++.++++++. +.+.++||++||.+++.+.+.
T Consensus 95 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------- 167 (273)
T 1ae1_A 95 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPS------- 167 (273)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTT-------
T ss_pred HcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCCC-------
Confidence 47899999999754321 344677889999999999999873 345679999999966554321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch---hHHHHHHHHcCCCCC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA---SMLMLLRLLQGCTDT 218 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~---~~~~~~~~~~g~~~~ 218 (323)
...|+.+|.+.+.+.+.++.+. |+++++++||.+++|........ .......+....+
T Consensus 168 --------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p-- 231 (273)
T 1ae1_A 168 --------------VSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP-- 231 (273)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST--
T ss_pred --------------cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCC--
Confidence 1349999999999999988764 89999999999999864321110 0111122222111
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
. ..+.+++|+|++++.++.... ..|+ +++.+.
T Consensus 232 --~--~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 266 (273)
T 1ae1_A 232 --M--GRAGKPQEVSALIAFLCFPAASYITGQIIWADGG 266 (273)
T ss_dssp --T--CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --C--CCCcCHHHHHHHHHHHhCccccCcCCCEEEECCC
Confidence 1 136799999999999987432 2455 555443
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=201.42 Aligned_cols=219 Identities=17% Similarity=0.118 Sum_probs=163.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|+++.|+.. ....+..+.+...+.++.++.+|++|.++++++++
T Consensus 24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSA-GAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999988532 22222233333334578999999999999888776
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++. +.+.++||++||.++..+....
T Consensus 103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------- 175 (269)
T 4dmm_A 103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQ------- 175 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTTC-------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCc-------
Confidence 789999999976432 2456678899999999999999873 3455799999999777654321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+.+.++.+ .|+++++++||.+.+|.... . .........+
T Consensus 176 --------------~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----~--~~~~~~~~~p------ 229 (269)
T 4dmm_A 176 --------------ANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE----L--AAEKLLEVIP------ 229 (269)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH----H--HHHHHGGGCT------
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc----c--cHHHHHhcCC------
Confidence 34999999999999988876 48999999999999986431 1 1112222211
Q ss_pred CCCcccHHHHHHHHHHhhcCCCC---Ccc-EEEEc
Q 020608 223 FMGSVHFKDVALAHILVYENPSA---CGR-HLCVE 253 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~~---~~~-~~~~~ 253 (323)
...+.+++|+|++++.++..+.. .|+ +++.+
T Consensus 230 ~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdG 264 (269)
T 4dmm_A 230 LGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDG 264 (269)
T ss_dssp TSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEEST
T ss_pred CCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECC
Confidence 12367899999999999987332 355 56654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-28 Score=204.03 Aligned_cols=221 Identities=17% Similarity=0.147 Sum_probs=162.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecC-CCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN-LSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+ +..... ..+.+...+.++.++.+|++|.++++++++
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDE--TIASMRADGGDAAFFAADLATSEACQQLVDEFVAK 82 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHH--HHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHH--HHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999998 544332 122222223578899999999999888877
Q ss_pred --CCCEEEEcccC-CccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC--c---CEEEEeccccccc-CCCCCC
Q 020608 77 --GCTGVFHLASP-CIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG--V---KRVVVTSSISSIT-PSPKWP 139 (323)
Q Consensus 77 --~~d~Vih~a~~-~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~---~~~v~~SS~~~~~-~~~~~~ 139 (323)
++|+|||+||. .... ...+.+...+++|+.++.++++++.. .+ . +++|++||..++. +...
T Consensus 83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-- 160 (258)
T 3afn_B 83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPG-- 160 (258)
T ss_dssp HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCTT--
T ss_pred cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCCC--
Confidence 79999999996 3221 13345678899999999999997632 22 2 6999999986554 2211
Q ss_pred CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC
Q 020608 140 ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT 216 (323)
Q Consensus 140 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~ 216 (323)
...|+.+|.+.|.+++.++.+. |++++++|||.+++|..... .......+..+.+
T Consensus 161 -------------------~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~ 218 (258)
T 3afn_B 161 -------------------AGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK---TQDVRDRISNGIP 218 (258)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC---CHHHHHHHHTTCT
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc---CHHHHHHHhccCC
Confidence 1459999999999999888764 89999999999999865432 1122333333322
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCC---CCcc-EEEEcCc
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPS---ACGR-HLCVEAI 255 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~-~~~~~~~ 255 (323)
...+++++|+|++++.++.... ..|+ |+++++.
T Consensus 219 ------~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 219 ------MGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp ------TCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred ------CCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 1247899999999999987532 2344 7776553
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=195.13 Aligned_cols=221 Identities=16% Similarity=0.103 Sum_probs=163.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEE-ecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHAT-VKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
++|++|||||+|+||++++++|+++|++|+++ .|+. ....+..+.+...+.++.++.+|++|.++++++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSK--KAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999987 5653 22223333444445689999999999999887765
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||..... ...+.+...+++|+.++.++++++ ++.+.++||++||.+++.+....
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~--------- 151 (258)
T 3oid_A 81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENY--------- 151 (258)
T ss_dssp SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCTTC---------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCCCc---------
Confidence 579999999965332 244567789999999999999997 34456799999999766544321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.||.+.+.+++.++.++ |+++++++||.+.+|....... ............+ ..
T Consensus 152 ------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~p------~~ 212 (258)
T 3oid_A 152 ------------TTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPN-REDLLEDARQNTP------AG 212 (258)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTT-HHHHHHHHHHHCT------TS
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhccc-CHHHHHHHHhcCC------CC
Confidence 449999999999999998875 8999999999999986432221 1122222222221 12
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.+.+++|+|++++.++.... ..|+ +++.++
T Consensus 213 r~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG 245 (258)
T 3oid_A 213 RMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGG 245 (258)
T ss_dssp SCBCHHHHHHHHHHHTSSTTTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence 36789999999999997643 2455 566543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=196.70 Aligned_cols=221 Identities=19% Similarity=0.129 Sum_probs=161.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|+++.|+.. ....+..+.+...+.++.++.+|++|.++++++++
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAA-ERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999877642 22223333333335678999999999999888776
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+||||||...... +.+.+...+++|+.++.++++++... ..+++|++||..+......
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~~~----------- 175 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVPWP----------- 175 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCCST-----------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCCCC-----------
Confidence 7899999999754322 45567889999999999999998654 3469999999744432110
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
....|+.+|.+.+.+++.++.+. |+++++++||.|.+|......... .......+. ..
T Consensus 176 ---------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~----~~~~~~~~~------~r 236 (271)
T 3v2g_A 176 ---------GISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDHA----EAQRERIAT------GS 236 (271)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCSSH----HHHHHTCTT------SS
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccchhH----HHHHhcCCC------CC
Confidence 01449999999999999988774 899999999999998754322111 112222111 12
Q ss_pred cccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 226 SVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
+.+++|+|++++.++.... ..|+ +++.+
T Consensus 237 ~~~pedvA~~v~fL~s~~~~~itG~~i~vdG 267 (271)
T 3v2g_A 237 YGEPQDIAGLVAWLAGPQGKFVTGASLTIDG 267 (271)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCHHHHHHHHHHHhCcccCCccCCEEEeCc
Confidence 6689999999999986432 3455 45544
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=199.82 Aligned_cols=221 Identities=18% Similarity=0.108 Sum_probs=159.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+...+.++.++.+|++|.++++++++
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVD--RTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLH 89 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999753222 2222332224578889999999998887765
Q ss_pred -CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||.... ..+.+.+...+++|+.++.++++++. +.+.++||++||.+++.+...
T Consensus 90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 160 (260)
T 2zat_A 90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPN--------- 160 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT---------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCCC---------
Confidence 79999999996421 12345678899999999999998864 456689999999966554321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
...|+.+|.+.+.+++.++.+. |+++++++||.+.++....... .......+.... ..
T Consensus 161 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~------~~ 221 (260)
T 2zat_A 161 ------------LGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWM-DKARKEYMKESL------RI 221 (260)
T ss_dssp ------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHS-SHHHHHHHHHHH------TC
T ss_pred ------------chhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhccc-ChHHHHHHHhcC------CC
Confidence 1349999999999999988764 8999999999999885321000 000011111111 11
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
..+++++|+|+++..++.... ..|+ +++.+
T Consensus 222 ~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdg 254 (260)
T 2zat_A 222 RRLGNPEDCAGIVSFLCSEDASYITGETVVVGG 254 (260)
T ss_dssp SSCBCGGGGHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred CCCCCHHHHHHHHHHHcCcccCCccCCEEEECC
Confidence 237899999999999987543 2344 66753
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=197.40 Aligned_cols=219 Identities=16% Similarity=0.089 Sum_probs=150.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+... .. .++.++.+|++|.++++++++
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~----------~~--~~~~~~~~D~~d~~~~~~~~~~~~~ 70 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ----------EQ--YPFATEVMDVADAAQVAQVCQRLLA 70 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS----------SC--CSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh----------hc--CCceEEEcCCCCHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999997642 11 137889999999999888776
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.++||++||.+++.+...
T Consensus 71 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~-------- 142 (250)
T 2fwm_X 71 ETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIG-------- 142 (250)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT--------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCC--------
Confidence 7899999999754321 34567889999999999999988 4445689999999966544321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHH-HHHc-CCCCCcc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLL-RLLQ-GCTDTYE 220 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~-~~~~-g~~~~~~ 220 (323)
...|+.+|.+.+.+.+.++.+. |+++++++||.+++|....... ...... .+.. .......
T Consensus 143 -------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 208 (250)
T 2fwm_X 143 -------------MSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV-SDDAEEQRIRGFGEQFKLG 208 (250)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc-ChhHHHHHHhhhhhccccc
Confidence 1449999999999999988764 8999999999999986432100 000000 1100 0000000
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.....+.+++|+|++++.++.... ..|+ +++.+
T Consensus 209 ~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 244 (250)
T 2fwm_X 209 IPLGKIARPQEIANTILFLASDLASHITLQDIVVDG 244 (250)
T ss_dssp -------CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 011236799999999999987542 3455 45544
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=200.34 Aligned_cols=222 Identities=15% Similarity=0.075 Sum_probs=162.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.. ..+..+.+...+.++.++.+|++|.++++++.+
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (273)
T 3uf0_A 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG---VKEVADEIADGGGSAEAVVADLADLEGAANVAEELAAT 104 (273)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH---HHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH---HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999986532 223333344445678999999999998877654
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.++||++||..++.+....
T Consensus 105 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~--------- 175 (273)
T 3uf0_A 105 RRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNV--------- 175 (273)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSC---------
T ss_pred CCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCCCC---------
Confidence 7899999999764322 44567889999999999999987 33456799999999776554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.+++|...... ........+....+ ..
T Consensus 176 ------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~p------~~ 236 (273)
T 3uf0_A 176 ------------AAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALR-ADDERAAEITARIP------AG 236 (273)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-TSHHHHHHHHHHST------TS
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcc-cCHHHHHHHHhcCC------CC
Confidence 34999999999999999877 5899999999999998532110 01111222222221 12
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.+.+++|+|++++.++.... ..|+ +++.++
T Consensus 237 r~~~pedva~~v~~L~s~~a~~itG~~i~vdGG 269 (273)
T 3uf0_A 237 RWATPEDMVGPAVFLASDAASYVHGQVLAVDGG 269 (273)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence 36789999999999997532 3455 556543
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=198.21 Aligned_cols=223 Identities=19% Similarity=0.095 Sum_probs=162.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+. ..+..+.+...+.++.++.+|++|.++++++++
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNA--LAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF 83 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHH--HHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999887432 223333444445688999999999999888765
Q ss_pred -CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccc-cCCCCCCCCcccc
Q 020608 77 -GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSI-TPSPKWPADKVKD 145 (323)
Q Consensus 77 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~-~~~~~~~~~~~~~ 145 (323)
++|+||||||.... ..+.+.+...+++|+.++.++++++. +.+.+++|++||..++ .+...
T Consensus 84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 155 (280)
T 3tox_A 84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAG-------- 155 (280)
T ss_dssp SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCTT--------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCCC--------
Confidence 78999999996532 12456678899999999999999874 3445699999998655 22211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC-chhHHHHHHHHcCCCCCccC
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL-NASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~-~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.||.+.+.+++.++.++ |+++++++||.+.+|...... .........+....+
T Consensus 156 -------------~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p----- 217 (280)
T 3tox_A 156 -------------VAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHA----- 217 (280)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTST-----
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCc-----
Confidence 1449999999999999988774 899999999999998643211 001112222222221
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+.+++|+|++++.++.... ..|+ +++.++
T Consensus 218 -~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 252 (280)
T 3tox_A 218 -LKRIARPEEIAEAALYLASDGASFVTGAALLADGG 252 (280)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -cCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCC
Confidence 1236789999999999997643 3455 556543
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=199.24 Aligned_cols=219 Identities=18% Similarity=0.127 Sum_probs=156.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEE-ecCCCcHHHHHHHhhccCCCCCeEE-EEccCCCHhHHHHHhc------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHAT-VKNLSDERETAHLKALEGADTRLRL-FQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~~~~~~~~~~~------ 76 (323)
||+||||||+|+||++++++|+++|++|+++ .|+.+... +..+.+...+.++.. +.+|++|.++++++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAE--EVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVL 78 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHH--HHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHH--HHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999998 67542222 222222222345666 8999999998887754
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++ ++.+.++||++||..++++....
T Consensus 79 ~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~--------- 149 (245)
T 2ph3_A 79 GGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQ--------- 149 (245)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCSSB---------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCCCC---------
Confidence 789999999975421 234567789999999966666554 45567899999998766654311
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+. |++++++|||.+++|...... .........+.+ ..
T Consensus 150 ------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~------~~ 208 (245)
T 2ph3_A 150 ------------ANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLP---QEVKEAYLKQIP------AG 208 (245)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC---HHHHHHHHHTCT------TC
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcC---HHHHHHHHhcCC------CC
Confidence 349999999999999888764 899999999999998543211 112222222221 12
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEcCc
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVEAI 255 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~~ 255 (323)
.+++++|+|++++.++..+. ..|+ ++++++.
T Consensus 209 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 209 RFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGGL 242 (245)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCcccccccCCEEEECCCC
Confidence 47899999999999987532 2344 6676543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=199.77 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=157.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC--CCCeEEEEccCCCHhHHHHHhc--
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+... ..++.++.+|++|.++++++++
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (260)
T 2z1n_A 3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLE--AAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKA 80 (260)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 3467789999999999999999999999999999999753222 222222211 2268899999999999888876
Q ss_pred ----CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ----GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++. +.+.++||++||..++.+...
T Consensus 81 ~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 153 (260)
T 2z1n_A 81 RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQD------- 153 (260)
T ss_dssp HHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-------
T ss_pred HHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCC-------
Confidence 599999999965322 2345678899999999988777763 445689999999966554321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCc-------hhHHH-HHHHHc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLN-------ASMLM-LLRLLQ 213 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~-------~~~~~-~~~~~~ 213 (323)
...|+.+|...+.+.+.++.+. |+++++++||.+++|....... ..... ...+..
T Consensus 154 --------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T 2z1n_A 154 --------------LALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMAS 219 (260)
T ss_dssp --------------BHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------
T ss_pred --------------CchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHh
Confidence 1349999999999999888764 8999999999999986541100 00000 011111
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
. .+. ..+.+++|+|++++.++.... ..|+ +++.+
T Consensus 220 ~----~p~--~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdG 256 (260)
T 2z1n_A 220 R----IPM--GRVGKPEELASVVAFLASEKASFITGAVIPVDG 256 (260)
T ss_dssp C----CTT--SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred c----CCC--CCccCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence 1 111 237799999999999987532 3455 45544
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=195.90 Aligned_cols=212 Identities=17% Similarity=0.139 Sum_probs=156.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +....+. .++.++.+|++|.++++++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~ 79 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGK--AMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAF 79 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHhh---cCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999998743221 2222222 247889999999999888877
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||.+++.+...
T Consensus 80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 149 (260)
T 1nff_A 80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVA---------- 149 (260)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCCC----------
Confidence 799999999975432 134467789999999997777665 4455679999999966654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
...|+.+|.+.+.+++.++.+ +|++++++|||.+++|.... .. ......+ ..
T Consensus 150 -----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~-----------~~~~~~~--~~ 204 (260)
T 1nff_A 150 -----------CHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW-VP-----------EDIFQTA--LG 204 (260)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT-SC-----------TTCSCCS--SS
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCcccc-ch-----------hhHHhCc--cC
Confidence 134999999999999998876 58999999999999986421 00 0000011 12
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.+++++|+|++++.++.... ..|+ +++.++
T Consensus 205 ~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG 237 (260)
T 1nff_A 205 RAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG 237 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 37899999999999987532 2344 666544
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=200.23 Aligned_cols=222 Identities=15% Similarity=0.094 Sum_probs=162.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+++...+.++.++.+|++|.++++++++
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQ--VVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH--HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999754433 2223333334578999999999999888776
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCcccc
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+ .+++|++||.++..+....
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~~------- 179 (276)
T 3r1i_A 107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQ------- 179 (276)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCSS-------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCCC-------
Confidence 7899999999764422 4456778889999999999998743 22 2689999998665443210
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
....|+.||.+.+.+++.++.+ .|+++++++||.|.++...... ..........+
T Consensus 180 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~----~~~~~~~~~~p------ 237 (276)
T 3r1i_A 180 ------------QVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLA----DYHALWEPKIP------ 237 (276)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGGG----GGHHHHGGGST------
T ss_pred ------------CcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccch----HHHHHHHhcCC------
Confidence 0144999999999999999877 5899999999999998653211 11122222111
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+.+++|+|++++.++.... ..|+ +++.++
T Consensus 238 ~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 272 (276)
T 3r1i_A 238 LGRMGRPEELTGLYLYLASAASSYMTGSDIVIDGG 272 (276)
T ss_dssp TSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHcCccccCccCcEEEECcC
Confidence 1226789999999999997533 3455 555543
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=199.35 Aligned_cols=218 Identities=15% Similarity=0.072 Sum_probs=158.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCE-EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH-hHHHHHhc--
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY-DAIAAAVT-- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~-- 76 (323)
|++++|+|+||||+|+||++++++|+++|++ |++++|+... ...+.+.... .+.++.++.+|++|. ++++++++
T Consensus 1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~-~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T 1sby_A 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKAIN-PKVNITFHTYDVTVPVAESKKLLKKI 78 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHHHHHHC-TTSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH-HHHHHHHHhC-CCceEEEEEEecCCChHHHHHHHHHH
Confidence 8889999999999999999999999999996 9999987642 2222222221 134688999999998 77777665
Q ss_pred -----CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC----C---cCEEEEecccccccCCCCCCCCccc
Q 020608 77 -----GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL----G---VKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 -----~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~---~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||.. ..+.+...+++|+.++.++++++... + .++||++||.+++.+...
T Consensus 79 ~~~~g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 147 (254)
T 1sby_A 79 FDQLKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQ------- 147 (254)
T ss_dssp HHHHSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTT-------
T ss_pred HHhcCCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCCC-------
Confidence 789999999974 45678899999999999999997532 1 358999999966554321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchh--HHHHHHHHcCCCCCc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNAS--MLMLLRLLQGCTDTY 219 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~--~~~~~~~~~g~~~~~ 219 (323)
...|+.||.+.+.+++.++.+ .|+++++++||.+.+|......... ..........
T Consensus 148 --------------~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~----- 208 (254)
T 1sby_A 148 --------------VPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS----- 208 (254)
T ss_dssp --------------SHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT-----
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhc-----
Confidence 134999999999999988876 5899999999999997432110000 0001111111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCCCCccEEEEcC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPSACGRHLCVEA 254 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~ 254 (323)
.++.+++|+|++++.+++....+..|++.++
T Consensus 209 ----~~~~~~~dvA~~i~~~~~~~~~G~~~~v~gG 239 (254)
T 1sby_A 209 ----HPTQTSEQCGQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp ----SCCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred ----CCCCCHHHHHHHHHHHHHcCCCCCEEEEeCC
Confidence 1245899999999999875444444777654
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=201.08 Aligned_cols=220 Identities=20% Similarity=0.159 Sum_probs=162.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCC-CCeEEEEccCCCHhHHHHHhc----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGAD-TRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+..... +....+...+ .++.++.+|++|.++++++++
T Consensus 38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 115 (293)
T 3rih_A 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELS--SVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVD 115 (293)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH--HHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999764433 2233333323 478999999999998877665
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccc-cCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSI-TPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~-~~~~~~~~~~~~ 144 (323)
++|+|||+||...... +.+.+...+++|+.++.++++++ ++.+.++||++||..+. .+...
T Consensus 116 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~~~------- 188 (293)
T 3rih_A 116 AFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPG------- 188 (293)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBCTT-------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCCCC-------
Confidence 6799999999764322 44567889999999999999997 35556799999998653 33321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.||.+.+.+++.++.+ +|+++++++||.+++|...... ......+....+.
T Consensus 189 --------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---~~~~~~~~~~~p~---- 247 (293)
T 3rih_A 189 --------------WSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMG---EEYISGMARSIPM---- 247 (293)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTC---HHHHHHHHTTSTT----
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhcc---HHHHHHHHhcCCC----
Confidence 144999999999999998877 4899999999999998532111 1223333333221
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
..+..++|+|.+++.++.... ..|+ +++.+
T Consensus 248 --~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdG 280 (293)
T 3rih_A 248 --GMLGSPVDIGHLAAFLATDEAGYITGQAIVVDG 280 (293)
T ss_dssp --SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 125689999999999987533 3455 55644
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=198.42 Aligned_cols=238 Identities=14% Similarity=0.118 Sum_probs=165.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC----------cHHHHHHHhhccCCCCCeEEEEccCCCHhHH
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS----------DERETAHLKALEGADTRLRLFQIDLLDYDAI 71 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 71 (323)
.+++|++|||||+|+||++++++|+++|++|++++|+.. .....+....+...+.++.++.+|++|.+++
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 367899999999999999999999999999999998732 1111122222333356889999999999998
Q ss_pred HHHhc-------CCCEEEEcccCCccC--CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCC
Q 020608 72 AAAVT-------GCTGVFHLASPCIVD--KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 72 ~~~~~-------~~d~Vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
+++++ ++|+||||||..... .+.+.+...+++|+.++.++++++... +.+++|++||.+++.+..
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~---- 162 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAA---- 162 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHH----
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccc----
Confidence 87766 789999999986443 345678899999999999999998664 245999999997766442
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcC--C
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQG--C 215 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g--~ 215 (323)
..+..+..+..+. ..|+.+|.+.+.+++.++.++ |+++++++||.|.+|...... . ....... .
T Consensus 163 ~~~~~~~~~~~~~------~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~---~~~~~~~~~~ 231 (287)
T 3pxx_A 163 QPPGAGGPQGPGG------AGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAP--M---YRQFRPDLEA 231 (287)
T ss_dssp CCC-----CHHHH------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHH--H---HHHHCTTSSS
T ss_pred ccccccccCCCcc------chHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc--h---hhhhcccccc
Confidence 1122222221111 459999999999999998775 899999999999998754210 0 0000000 0
Q ss_pred C---------CCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 216 T---------DTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 216 ~---------~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+ .........+.+++|+|++++.++.... ..|+ +++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG 282 (287)
T 3pxx_A 232 PSRADALLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAG 282 (287)
T ss_dssp CCHHHHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred chhHHHHhhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECch
Confidence 0 0000111348899999999999996533 3455 556443
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=199.15 Aligned_cols=219 Identities=17% Similarity=0.148 Sum_probs=140.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+.. .+..+++...+.++.++.+|++|.++++++++
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAA--EAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLA 82 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHH--HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 667889999999999999999999999999999999864322 22233333334578999999999999888776
Q ss_pred ---CCCEEEEcccCCc---c----CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCc
Q 020608 77 ---GCTGVFHLASPCI---V----DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ---~~d~Vih~a~~~~---~----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+||||||... . ..+.+.+...+++|+.++.++++++ ++.+.++||++||..++.+.
T Consensus 83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 155 (253)
T 3qiv_A 83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWLYS------- 155 (253)
T ss_dssp HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------
T ss_pred HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccCCC-------
Confidence 7899999999732 1 1244567789999999977777765 34456799999998554211
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.++ |+++++++||.+++|...... .......+.++.+
T Consensus 156 -----------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~~~--- 213 (253)
T 3qiv_A 156 -----------------NYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTT--PKEMVDDIVKGLP--- 213 (253)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC------------------------------
T ss_pred -----------------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcC--cHHHHHHHhccCC---
Confidence 349999999999999998885 899999999999998643211 1111122222211
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
...+.+++|+|++++.++..... .|+ |++.+
T Consensus 214 ---~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdg 247 (253)
T 3qiv_A 214 ---LSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDG 247 (253)
T ss_dssp ---------CCHHHHHHHHHHSGGGTTCCSCEEEC--
T ss_pred ---CCCCCCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence 12256789999999999975432 344 66654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=196.92 Aligned_cols=220 Identities=17% Similarity=0.107 Sum_probs=158.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+... ..+..+.+. .++.++.+|++|.++++++++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~---~~~~~~~~D~~d~~~v~~~~~~~~~~~ 84 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMA--AQAVVAGLE---NGGFAVEVDVTKRASVDAAMQKAIDAL 84 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHTCT---TCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHh---cCCeEEEEeCCCHHHHHHHHHHHHHHc
Confidence 456899999999999999999999999999999986422 112222232 267889999999999888876
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++.. .+ .++||++||..+..+.+.
T Consensus 85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 155 (263)
T 3ak4_A 85 GGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPL--------- 155 (263)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTT---------
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC---------
Confidence 799999999975332 23456788999999999999998743 34 579999999866543321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch---h-----HHHHHHHHcCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA---S-----MLMLLRLLQGC 215 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~---~-----~~~~~~~~~g~ 215 (323)
...|+.+|.+.+.+++.++.+. |++++++|||.+++|........ . ......+....
T Consensus 156 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (263)
T 3ak4_A 156 ------------LAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLT 223 (263)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred ------------chhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcC
Confidence 1349999999999999888764 89999999999999753210000 0 11111122221
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+ ...+++++|+|++++.++.... ..|+ +++.++
T Consensus 224 p------~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 259 (263)
T 3ak4_A 224 P------LGRIEEPEDVADVVVFLASDAARFMTGQGINVTGG 259 (263)
T ss_dssp T------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred C------CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcC
Confidence 1 1237899999999999987542 2454 666543
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=195.78 Aligned_cols=214 Identities=16% Similarity=0.067 Sum_probs=153.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+..+.. +.+... ++.++.+|++|.++++++++
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASV--TELRQA-----GAVALYGDFSCETGIMAFIDLLKT 95 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHH--HHHHHH-----TCEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH--HHHHhc-----CCeEEECCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999875422 222222 47889999999999888775
Q ss_pred ---CCCEEEEcccCCccCC---CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 ---GCTGVFHLASPCIVDK---VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++. +.+.++||++||..++.+....
T Consensus 96 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~-------- 167 (260)
T 3gem_A 96 QTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSSKH-------- 167 (260)
T ss_dssp HCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCSSC--------
T ss_pred hcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCc--------
Confidence 6899999999764332 223456799999999999999874 3456799999999776654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.||.+.+.+++.++.++ ++++++++||.+.++..... ..........+ . .
T Consensus 168 -------------~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~-----~~~~~~~~~~p----~--~ 223 (260)
T 3gem_A 168 -------------IAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDA-----AYRANALAKSA----L--G 223 (260)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC--------------------CC----S--C
T ss_pred -------------HhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCH-----HHHHHHHhcCC----C--C
Confidence 349999999999999998775 59999999999998753211 11111111111 1 1
Q ss_pred CcccHHHHHHHHHHhhcCCCCCcc-EEEEc
Q 020608 225 GSVHFKDVALAHILVYENPSACGR-HLCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~ 253 (323)
.+..++|+|++++.+++.....|+ +++.+
T Consensus 224 r~~~~edva~~v~~L~~~~~itG~~i~vdG 253 (260)
T 3gem_A 224 IEPGAEVIYQSLRYLLDSTYVTGTTLTVNG 253 (260)
T ss_dssp CCCCTHHHHHHHHHHHHCSSCCSCEEEEST
T ss_pred CCCCHHHHHHHHHHHhhCCCCCCCEEEECC
Confidence 255789999999999976655666 56654
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=197.82 Aligned_cols=220 Identities=16% Similarity=0.120 Sum_probs=163.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+||||||+|+||++++++|+++|++|+++.++. .....+..+.+.....++.++.+|++|.++++++++
T Consensus 24 l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (267)
T 4iiu_A 24 AMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRD-AAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH 102 (267)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999998776543 222223334443345688999999999999888776
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh-----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK-----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||...... +.+.+...+++|+.++.++++++. +.+.++||++||.+++.+....
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 174 (267)
T 4iiu_A 103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQ-------- 174 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCTTC--------
T ss_pred CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCCCC--------
Confidence 7899999999764322 445678899999999999999873 4456799999999777655321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+.++..... ...........+.
T Consensus 175 -------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~p~------ 231 (267)
T 4iiu_A 175 -------------VNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME----ESALKEAMSMIPM------ 231 (267)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC----HHHHHHHHHTCTT------
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc----HHHHHHHHhcCCC------
Confidence 349999999999888887764 89999999999999875432 1223333333221
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|++++.++.... ..|+ +++.++
T Consensus 232 ~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 232 KRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 236789999999999997533 3455 555543
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=198.75 Aligned_cols=221 Identities=15% Similarity=0.108 Sum_probs=159.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|+||||||+|+||++++++|+++|++|+++.|+.++. ....+.+...+.++.++.+|++|.++++++++
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~--~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 118 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSC--DSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE 118 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHH--HHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHH--HHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999988764222 22223333334578899999999999888764
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++. +.+.++||++||.+++++....
T Consensus 119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~-------- 190 (285)
T 2c07_A 119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQ-------- 190 (285)
T ss_dssp CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC--------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCC--------
Confidence 689999999976432 1344677899999999888888864 3456799999999776654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+. |++++++|||.+.++...... ...........+ .
T Consensus 191 -------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~----~-- 248 (285)
T 2c07_A 191 -------------ANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKIS---EQIKKNIISNIP----A-- 248 (285)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CC---HHHHHHHHTTCT----T--
T ss_pred -------------chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcC---HHHHHHHHhhCC----C--
Confidence 349999999999999888664 899999999999998643211 112222222211 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+++++|+|++++.++.... ..|+ +++.++
T Consensus 249 ~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG 282 (285)
T 2c07_A 249 GRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG 282 (285)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCC
Confidence 237899999999999987543 2444 556543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=197.58 Aligned_cols=211 Identities=15% Similarity=0.106 Sum_probs=148.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+.... ..+.+...+.++.++.+|++|.++++++++
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAP--LVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHH--HHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH--HHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999997644332 222333334578999999999999888776
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||.++..+....
T Consensus 82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 152 (252)
T 3h7a_A 82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSGF--------- 152 (252)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTTC---------
T ss_pred CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCCCC---------
Confidence 679999999975432 244567889999999999999987 33445799999999776654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccE-EEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDV-VVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~-~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.||.+.+.+.+.++.+. |+++ ++++||.+.++....... ......... .+ .
T Consensus 153 ------------~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~---~~~~~~~~~----~~--~ 211 (252)
T 3h7a_A 153 ------------AAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERRE---QMFGKDALA----NP--D 211 (252)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------------
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccch---hhhhhhhhc----CC--c
Confidence 349999999999999988774 8999 899999999876432110 011111000 11 1
Q ss_pred CCcccHHHHHHHHHHhhcCCCC
Q 020608 224 MGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
. +++++|+|++++.++..+..
T Consensus 212 ~-~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 212 L-LMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp ---CCHHHHHHHHHHHHHCCGG
T ss_pred c-CCCHHHHHHHHHHHHhCchh
Confidence 2 78999999999999986654
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=197.12 Aligned_cols=206 Identities=17% Similarity=0.167 Sum_probs=150.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++|+||||||+|+||++++++|+++| ++|++++|+..... .+..+ ...++.++.+|++|.++++++++
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~---~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT---ELKSI--KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH---HHHTC--CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH---HHHhc--cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999 99999999754332 22222 24578999999999999888776
Q ss_pred -----CCCEEEEcccCCc-cC----CCCCchhhhhhHHHHHHHHHHHHHhhC----------C-----cCEEEEeccccc
Q 020608 77 -----GCTGVFHLASPCI-VD----KVEDPQNQLLNPAVKGTVNVLTAAKAL----------G-----VKRVVVTSSISS 131 (323)
Q Consensus 77 -----~~d~Vih~a~~~~-~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~-----~~~~v~~SS~~~ 131 (323)
++|+|||+||... .. ...+.+...+++|+.++.++++++... + .++||++||..+
T Consensus 76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 155 (250)
T 1yo6_A 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcc
Confidence 8999999999764 21 234456789999999999999987432 3 579999999966
Q ss_pred ccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHH
Q 020608 132 ITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLML 208 (323)
Q Consensus 132 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~ 208 (323)
+.+... ++.+.. +...|+.+|.+.+.+++.++.++ |+++++++||.+.++....
T Consensus 156 ~~~~~~--------~~~~~~------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------- 212 (250)
T 1yo6_A 156 SITDNT--------SGSAQF------PVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK--------- 212 (250)
T ss_dssp CSTTCC--------STTSSS------CBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC----------------
T ss_pred ccCCcc--------cccccC------CccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC---------
Confidence 654321 011101 11459999999999999998775 8999999999998875321
Q ss_pred HHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 209 LRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 209 ~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
..+++++|+|++++.++.... ..|+|+.
T Consensus 213 ---------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~ 242 (250)
T 1yo6_A 213 ---------------NAALTVEQSTAELISSFNKLDNSHNGRFFM 242 (250)
T ss_dssp ---------------------HHHHHHHHHHHTTCCGGGTTCEEE
T ss_pred ---------------CCCCCHHHHHHHHHHHHhcccccCCCeEEE
Confidence 125689999999999998754 3566654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-28 Score=209.04 Aligned_cols=227 Identities=16% Similarity=0.171 Sum_probs=160.0
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcH---HHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE---RETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG 77 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (323)
|+ +||+|+|||||||||++++++|+++|++|+++.|+.+.. .....+..+. ..+++++.+|++|.+++.+++++
T Consensus 1 M~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~~~ 77 (308)
T 1qyc_A 1 MG-SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVKN 77 (308)
T ss_dssp -C-CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHHT
T ss_pred CC-CCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH--hCCCEEEEeccCCHHHHHHHHcC
Confidence 44 378999999999999999999999999999999986432 2222222222 24789999999999999999999
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhhhc
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCR 156 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 156 (323)
+|+|||+|+... +.++.+++++|++.+ +++||+ |+. .... +|..+..|.
T Consensus 78 ~d~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~~---g~~~--------~~~~~~~p~--- 127 (308)
T 1qyc_A 78 VDVVISTVGSLQ---------------IESQVNIIKAIKEVGTVKRFFP-SEF---GNDV--------DNVHAVEPA--- 127 (308)
T ss_dssp CSEEEECCCGGG---------------SGGGHHHHHHHHHHCCCSEEEC-SCC---SSCT--------TSCCCCTTH---
T ss_pred CCEEEECCcchh---------------hhhHHHHHHHHHhcCCCceEee-ccc---ccCc--------cccccCCcc---
Confidence 999999998521 345688999999988 999984 443 1111 122222221
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHHHHH
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDVA 233 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~a 233 (323)
.+.| .+|..+|.+++ +.+++++++||+.++|+......... .....+.... . ++..++|+|++|+|
T Consensus 128 --~~~y-~sK~~~e~~~~----~~~~~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~Dva 196 (308)
T 1qyc_A 128 --KSVF-EVKAKVRRAIE----AEGIPYTYVSSNCFAGYFLRSLAQAG----LTAPPRDKVVILGDGNARVVFVKEEDIG 196 (308)
T ss_dssp --HHHH-HHHHHHHHHHH----HHTCCBEEEECCEEHHHHTTTTTCTT----CSSCCSSEEEEETTSCCEEEEECHHHHH
T ss_pred --hhHH-HHHHHHHHHHH----hcCCCeEEEEeceecccccccccccc----ccCCCCCceEEecCCCceEEEecHHHHH
Confidence 1348 99999998875 35899999999999885432111000 0000111111 2 34456799999999
Q ss_pred HHHHHhhcCCCCCc-cEEE-E-cCccCHHHHHHHHHHHCCC
Q 020608 234 LAHILVYENPSACG-RHLC-V-EAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 234 ~~~~~~~~~~~~~~-~~~~-~-~~~~~~~e~~~~i~~~~~~ 271 (323)
++++.+++++...+ .|++ + ++.+|+.|+++.+.+.+|.
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 237 (308)
T 1qyc_A 197 TFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDK 237 (308)
T ss_dssp HHHHTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCccccCeEEEEeCCCCccCHHHHHHHHHHHhCC
Confidence 99999998765433 4665 3 4689999999999999974
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=198.12 Aligned_cols=221 Identities=19% Similarity=0.172 Sum_probs=150.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.. ....+..+.+...+.++.++.+|++|.++++++++
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDA-EGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCH-HHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35688999999999999999999999999999987532 22223333333335679999999999998888776
Q ss_pred -CCCEEEEcccCCcc------CCCCCchhhhhhHHHHHHHHHHHHHhhC----C---cCEEEEecccccccCCCCCCCCc
Q 020608 77 -GCTGVFHLASPCIV------DKVEDPQNQLLNPAVKGTVNVLTAAKAL----G---VKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 -~~d~Vih~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~---~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+||||||.... ..+.+.+...+++|+.++.++++++... + .++||++||.+++.+....
T Consensus 106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~---- 181 (280)
T 4da9_A 106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPER---- 181 (280)
T ss_dssp SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------CC----
T ss_pred CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCCc----
Confidence 78999999997321 1245677889999999999999987432 2 4599999999776554321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.+|....... ........+.
T Consensus 182 -----------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~~---- 237 (280)
T 4da9_A 182 -----------------LDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSG---KYDGLIESGL---- 237 (280)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------------
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcch---hHHHHHhhcC----
Confidence 34999999999999998877 58999999999999986432110 0011111100
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.....+.+++|+|++++.++.... ..|+ +++.+
T Consensus 238 -~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 273 (280)
T 4da9_A 238 -VPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADG 273 (280)
T ss_dssp -----CCBCHHHHHHHHHHHHTSTTGGGTTCEEEEST
T ss_pred -CCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 011236789999999999997654 2455 55544
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=196.44 Aligned_cols=207 Identities=21% Similarity=0.144 Sum_probs=156.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------C
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------G 77 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~ 77 (323)
++|+||||||+|+||++++++|+++|++|++++|+.. . .++.++.+|++|.++++++++ +
T Consensus 1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 66 (242)
T 1uay_A 1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-------------EDLIYVEGDVTREEDVRRAVARAQEEAP 66 (242)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-------------SSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-------------cceEEEeCCCCCHHHHHHHHHHHHhhCC
Confidence 3589999999999999999999999999999999763 1 245889999999999998887 7
Q ss_pred CCEEEEcccCCccCC----CCC----chhhhhhHHHHHHHHHHHHHhhC----C------cCEEEEecccccccCCCCCC
Q 020608 78 CTGVFHLASPCIVDK----VED----PQNQLLNPAVKGTVNVLTAAKAL----G------VKRVVVTSSISSITPSPKWP 139 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~----~~~~~~~~n~~~~~~l~~~~~~~----~------~~~~v~~SS~~~~~~~~~~~ 139 (323)
+|+|||+||...... ..+ ++...+++|+.++.++++++.+. + .++||++||.+++.+...
T Consensus 67 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-- 144 (242)
T 1uay_A 67 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIG-- 144 (242)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTT--
T ss_pred ceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCC--
Confidence 899999999754322 112 67889999999999999998542 1 239999999976654321
Q ss_pred CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC
Q 020608 140 ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT 216 (323)
Q Consensus 140 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~ 216 (323)
...|+.+|.+.+.+++.++.+. |++++++|||.+++|...... ......+..+.+
T Consensus 145 -------------------~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~ 202 (242)
T 1uay_A 145 -------------------QAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLP---EKAKASLAAQVP 202 (242)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSC---HHHHHHHHTTCC
T ss_pred -------------------CchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccc---hhHHHHHHhhCC
Confidence 1449999999999998887664 899999999999998643211 112223333322
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCCCCcc-EEEEc
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPSACGR-HLCVE 253 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~ 253 (323)
. + ..+++++|+|++++.++......|+ +++.+
T Consensus 203 ~--~---~~~~~~~dva~~~~~l~~~~~~~G~~~~v~g 235 (242)
T 1uay_A 203 F--P---PRLGRPEEYAALVLHILENPMLNGEVVRLDG 235 (242)
T ss_dssp S--S---CSCCCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred C--c---ccCCCHHHHHHHHHHHhcCCCCCCcEEEEcC
Confidence 1 0 2378999999999999987544555 66654
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=198.45 Aligned_cols=222 Identities=17% Similarity=0.097 Sum_probs=160.7
Q ss_pred CCCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 2 SKEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 2 ~~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
++++|++|||||+ |+||++++++|+++|++|++++|+.......+.+.. ....+.++.+|++|.++++++++
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAE---ALGGALLFRADVTQDEELDALFAGVK 81 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHH---HTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH---hcCCcEEEECCCCCHHHHHHHHHHHH
Confidence 4678899999999 999999999999999999999997531112222211 11247889999999999888776
Q ss_pred ----CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCCCc
Q 020608 77 ----GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+|||+||.... ..+.+.+...+++|+.++.++++++...- .++||++||.+++.+.+.
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 156 (261)
T 2wyu_A 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPK----- 156 (261)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTT-----
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCCCC-----
Confidence 68999999997532 22455678899999999999999987651 259999999866554321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
...|+.+|.+.+.+++.++.+. |+++++++||.+++|...... ........+....+.
T Consensus 157 ----------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~p~-- 217 (261)
T 2wyu_A 157 ----------------YNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP-GFTKMYDRVAQTAPL-- 217 (261)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCT-THHHHHHHHHHHSTT--
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhcc-ccHHHHHHHHhcCCC--
Confidence 1349999999999999988775 899999999999998643211 111222222222211
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|++++.++.... ..|+ +++.++
T Consensus 218 ----~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 251 (261)
T 2wyu_A 218 ----RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAG 251 (261)
T ss_dssp ----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 226789999999999986432 2344 666543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=198.48 Aligned_cols=222 Identities=18% Similarity=0.081 Sum_probs=161.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
++|++|||||+|+||++++++|+++|++|++++|+... ..+..+.+...+.++.++.+|++|.++++++++
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~--~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKN--VSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999987432 223333444445689999999999998887765
Q ss_pred CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh------CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA------LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~------~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++.. .+.++||++||.+++.+....
T Consensus 101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~-------- 172 (279)
T 3sju_A 101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYA-------- 172 (279)
T ss_dssp SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCTTC--------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCCCC--------
Confidence 689999999976432 23456778899999999999998754 345799999999776544321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCC--------CchhHHHHHHHHcCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPT--------LNASMLMLLRLLQGC 215 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~--------~~~~~~~~~~~~~g~ 215 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.+|..... ..........+....
T Consensus 173 -------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (279)
T 3sju_A 173 -------------APYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKI 239 (279)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTC
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcC
Confidence 34999999999999999887 489999999999988742100 000111222222222
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+ ...+.+++|+|++++.++.... ..|+ +++.++
T Consensus 240 p------~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 275 (279)
T 3sju_A 240 P------LGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGG 275 (279)
T ss_dssp T------TSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTT
T ss_pred C------CCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 1 1236789999999999987643 3455 556543
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=196.79 Aligned_cols=221 Identities=11% Similarity=0.040 Sum_probs=159.0
Q ss_pred CCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|++|||||+ |+||++++++|+++|++|++++|+.... +..+.+.....++.++.+|++|.++++++++
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLE---KRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEE 95 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGH---HHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHH---HHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999 9999999999999999999999976311 1222221111246789999999999887765
Q ss_pred ---CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhCC---cCEEEEecccccccCCCCCCCCc
Q 020608 77 ---GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKALG---VKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+||||||.... ..+.+.+...+++|+.++.++++++...- .++||++||.+++.+.+..
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~---- 171 (285)
T 2p91_A 96 NWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVPHY---- 171 (285)
T ss_dssp HTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCTTT----
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCCCc----
Confidence 68999999997542 22445678899999999999999986542 3699999998665543211
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+++|...... ........+....+.
T Consensus 172 -----------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~p~-- 231 (285)
T 2p91_A 172 -----------------NVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSIT-GFHLLMEHTTKVNPF-- 231 (285)
T ss_dssp -----------------THHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CT-THHHHHHHHHHHSTT--
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhccc-chHHHHHHHHhcCCC--
Confidence 349999999999999888764 899999999999998654221 111222222222211
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|++++.++.... ..|+ +++.++
T Consensus 232 ----~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg 265 (285)
T 2p91_A 232 ----GKPITIEDVGDTAVFLCSDWARAITGEVVHVDNG 265 (285)
T ss_dssp ----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ----CCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 126789999999999986432 2455 556543
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=195.40 Aligned_cols=220 Identities=13% Similarity=0.083 Sum_probs=152.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|++.. ...+.+.. .+.++.++.+|++|.++++++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP-EAEAAIRN---LGRRVLTVKCDVSQPGDVEAFGKQVISTF 80 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH-HHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchh-HHHHHHHh---cCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 567899999999999999999999999999999997621 11112222 23478899999999998887754
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||..++.+.+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 150 (249)
T 2ew8_A 81 GRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEA---------- 150 (249)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSS----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCC----------
Confidence 789999999975432 234567789999999998888884 4455679999999966654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
...|+.+|.+.+.+.+.++.+. |+++++++||.+.++......... ........ ..+ ..
T Consensus 151 -----------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~---~~~~~~~~--~~~--~~ 212 (249)
T 2ew8_A 151 -----------YTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSA---MFDVLPNM--LQA--IP 212 (249)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------CT--TSS--SC
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccc---hhhHHHHh--hCc--cC
Confidence 1349999999999999988764 899999999999998643110000 00000100 011 12
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.+.+++|+|++++.++.... ..|+ +++.++
T Consensus 213 ~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG 245 (249)
T 2ew8_A 213 RLQVPLDLTGAAAFLASDDASFITGQTLAVDGG 245 (249)
T ss_dssp SCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred CCCCHHHHHHHHHHHcCcccCCCCCcEEEECCC
Confidence 37899999999999987532 3455 455443
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=192.06 Aligned_cols=217 Identities=18% Similarity=0.107 Sum_probs=153.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GCT 79 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 79 (323)
.++|+||||||+|+||++++++|+++|++|++++|+.+... +..+.+ ..++.++.+|+++.+++.++++ ++|
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id 86 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLK--SLGNAL---KDNYTIEVCNLANKEECSNLISKTSNLD 86 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHH---CSSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHH--HHHHHh---ccCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence 46899999999999999999999999999999999643222 222222 2378899999999999998887 689
Q ss_pred EEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCCCCCC
Q 020608 80 GVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTD 151 (323)
Q Consensus 80 ~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~ 151 (323)
+|||+||..... ...+++...+++|+.++.++++++. +.+.++||++||..++.+....
T Consensus 87 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------------- 153 (249)
T 3f9i_A 87 ILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQ------------- 153 (249)
T ss_dssp EEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCSCS-------------
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCCCC-------------
Confidence 999999976432 2556788999999999999998873 3445799999999766544321
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCccc
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVH 228 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 228 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.++....... .....+..+. ....+.+
T Consensus 154 --------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~---~~~~~~~~~~------~~~~~~~ 216 (249)
T 3f9i_A 154 --------ANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNE---KQREAIVQKI------PLGTYGI 216 (249)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCH---HHHHHHHHHC------TTCSCBC
T ss_pred --------chhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCH---HHHHHHHhcC------CCCCCcC
Confidence 34999999999999988876 48999999999999986543221 1122222222 1133778
Q ss_pred HHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 229 FKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 229 v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
++|+|++++.++..... .|+ +++.++
T Consensus 217 ~~dva~~~~~l~s~~~~~~tG~~~~vdgG 245 (249)
T 3f9i_A 217 PEDVAYAVAFLASNNASYITGQTLHVNGG 245 (249)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence 99999999999975432 355 666544
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=201.25 Aligned_cols=236 Identities=13% Similarity=0.094 Sum_probs=163.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCC---CeEEEEccCCCHhHHHHHhc-
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADT---RLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+...+. ++.++.+|++|.++++++++
T Consensus 22 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 99 (297)
T 1xhl_A 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLE--ETKQQILKAGVPAEKINAVVADVTEASGQDDIINT 99 (297)
T ss_dssp -CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 3467789999999999999999999999999999999753222 22222222222 68899999999999888765
Q ss_pred ------CCCEEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCC-CCCC
Q 020608 77 ------GCTGVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPS-PKWP 139 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~-~~~~ 139 (323)
++|+||||||..... ...+.+...+++|+.++.++++++.. .+ ++||++||..++.+. +.
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~~~~-- 176 (297)
T 1xhl_A 100 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQAHSG-- 176 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSCCTT--
T ss_pred HHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCCCCC--
Confidence 789999999975321 13456788999999999999998743 34 799999998655433 11
Q ss_pred CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCC-chh-----HHHHHH
Q 020608 140 ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTL-NAS-----MLMLLR 210 (323)
Q Consensus 140 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~-~~~-----~~~~~~ 210 (323)
...|+.+|.+.+.+.+.++.+ +|+++++++||.+.+|...... ... ......
T Consensus 177 -------------------~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 237 (297)
T 1xhl_A 177 -------------------YPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGS 237 (297)
T ss_dssp -------------------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHH
Confidence 134999999999999988865 5899999999999998532110 000 011111
Q ss_pred HHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC---CCCcc-EEEEcC-ccCHHHHHHHHH
Q 020608 211 LLQGCTDTYENFFMGSVHFKDVALAHILVYENP---SACGR-HLCVEA-ISHYGDFVAKVA 266 (323)
Q Consensus 211 ~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~~~-~~~~~~-~~~~~e~~~~i~ 266 (323)
.... .+. ..+.+++|+|++++.++... ...|+ +++.++ .....+.++.+.
T Consensus 238 ~~~~----~p~--~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~ 292 (297)
T 1xhl_A 238 RKEC----IPV--GHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLM 292 (297)
T ss_dssp CTTT----CTT--SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHH
T ss_pred HHhc----CCC--CCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchh
Confidence 1111 111 23789999999999998754 33455 556433 344444444333
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=195.26 Aligned_cols=221 Identities=15% Similarity=0.085 Sum_probs=158.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+.. .+..+.+...+ ++.++.+|++|.++++++++
T Consensus 25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~--~~~~~~l~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (276)
T 2b4q_A 25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEAC--ADTATRLSAYG-DCQAIPADLSSEAGARRLAQALGE 101 (276)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHH--HHHHHHHTTSS-CEEECCCCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHHHhcC-ceEEEEeeCCCHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999998864322 22223333222 68889999999998887765
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCc----CEEEEecccccccCCCCCCCC
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGV----KRVVVTSSISSITPSPKWPAD 141 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~----~~~v~~SS~~~~~~~~~~~~~ 141 (323)
++|+||||||..... ...+.+...+++|+.++.++++++. +.+. ++||++||.+++.+.+...
T Consensus 102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~~~-- 179 (276)
T 2b4q_A 102 LSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQA-- 179 (276)
T ss_dssp HCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCCSC--
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCCCCc--
Confidence 689999999975432 2445678899999999998888863 3333 7999999996665432210
Q ss_pred ccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHc--CCC
Q 020608 142 KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQ--GCT 216 (323)
Q Consensus 142 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~--g~~ 216 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.++..... .......... ..+
T Consensus 180 ------------------~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~~p 238 (276)
T 2b4q_A 180 ------------------YAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHI---ANDPQALEADSASIP 238 (276)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHH---HHCHHHHHHHHHTST
T ss_pred ------------------cccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhc---chhHHHHHHhhcCCC
Confidence 14999999999999998876 489999999999998853210 0001111111 111
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 239 ------~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 272 (276)
T 2b4q_A 239 ------MGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDG 272 (276)
T ss_dssp ------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ------CCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence 1237799999999999987542 3455 44543
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=192.39 Aligned_cols=220 Identities=16% Similarity=0.134 Sum_probs=158.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
|++|++|||||+|+||++++++|+++|++|+++.|+. .....+..+.+...+.++.++.+|++|.++++++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGN-EQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF 80 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999998832 111112222332224578899999999999888776
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++. +.+.++||++||.+++++.+..
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 151 (246)
T 2uvd_A 81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQ--------- 151 (246)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTB---------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCCCC---------
Confidence 789999999975332 2345678899999999888777753 3456799999999776654311
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+.+.++.+ +|+++++++||.+.+|........ .........+ ..
T Consensus 152 ------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~~~~~~~~p------~~ 210 (246)
T 2uvd_A 152 ------------ANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDEN---IKAEMLKLIP------AA 210 (246)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTT---HHHHHHHTCT------TC
T ss_pred ------------chHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHH---HHHHHHhcCC------CC
Confidence 34999999999998888765 489999999999999864321111 1112222211 12
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.+++++|+|++++.++.... ..|+ +++.+
T Consensus 211 ~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdg 242 (246)
T 2uvd_A 211 QFGEAQDIANAVTFFASDQSKYITGQTLNVDG 242 (246)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCcCHHHHHHHHHHHcCchhcCCCCCEEEECc
Confidence 37899999999999987532 2455 45544
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=197.51 Aligned_cols=219 Identities=15% Similarity=0.089 Sum_probs=157.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+. . +..+.+. . .++.+|++|.++++++++
T Consensus 2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~--~~~~~~~----~-~~~~~D~~~~~~~~~~~~~~~~ 73 (256)
T 2d1y_A 2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-K--EVAEAIG----G-AFFQVDLEDERERVRFVEEAAY 73 (256)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-H--HHHHHHT----C-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-H--HHHHHhh----C-CEEEeeCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999998654 2 2222221 3 788999999998887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||.+++.+.+.
T Consensus 74 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~-------- 145 (256)
T 2d1y_A 74 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQE-------- 145 (256)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTT--------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCC--------
Confidence 6899999999764322 234567899999999999999874 345679999999966654321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~~ 219 (323)
...|+.+|.+.+.+++.++.+. |+++++++||.+.++...... .........+...
T Consensus 146 -------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----- 207 (256)
T 2d1y_A 146 -------------NAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDL----- 207 (256)
T ss_dssp -------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTT-----
T ss_pred -------------ChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHHHHhc-----
Confidence 1349999999999999988764 899999999999886321000 0000000011111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.....+++++|+|++++.++.... ..|+ +++.++
T Consensus 208 -~~~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG 244 (256)
T 2d1y_A 208 -HALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGG 244 (256)
T ss_dssp -STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CCCCCCcCHHHHHHHHHHHhCchhcCCCCCEEEECCC
Confidence 112347899999999999987542 2454 666543
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=197.80 Aligned_cols=221 Identities=14% Similarity=0.057 Sum_probs=159.8
Q ss_pred CCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|++|||||+ |+||++++++|+++|++|++++|+.......+.+... .....++.+|++|.++++++++
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ---LGSDIVLQCDVAEDASIDTMFAELGK 83 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHh---cCCcEEEEccCCCHHHHHHHHHHHHH
Confidence 456899999999 9999999999999999999999976222222222111 1234788999999999888776
Q ss_pred ---CCCEEEEcccCCcc--------C-CCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCCCc
Q 020608 77 ---GCTGVFHLASPCIV--------D-KVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~--------~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+|||+||.... . .+.+.+...+++|+.++.++++++...- .++||++||.+++.+.+..
T Consensus 84 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~---- 159 (265)
T 1qsg_A 84 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNY---- 159 (265)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTT----
T ss_pred HcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCCCc----
Confidence 67999999997542 1 3445678899999999999999987642 2599999998666543221
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+++|...... ........+..+.+.
T Consensus 160 -----------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~p~-- 219 (265)
T 1qsg_A 160 -----------------NVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIK-DFRKMLAHCEAVTPI-- 219 (265)
T ss_dssp -----------------THHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGST-THHHHHHHHHHHSTT--
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhccc-ccHHHHHHHHhcCCC--
Confidence 349999999999999988774 899999999999998643211 111222222222211
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|++++.++.... ..|+ +++.++
T Consensus 220 ----~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 253 (265)
T 1qsg_A 220 ----RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 253 (265)
T ss_dssp ----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCHHHHHHHHHHHhCchhcCccCCEEEECCC
Confidence 236789999999999987533 2354 566543
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=196.00 Aligned_cols=226 Identities=17% Similarity=0.110 Sum_probs=157.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|+++.++... ...+..+.+...+.++.++.+|++|.++++++++
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAE-GAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCH-HHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999998655432 2223334444445678999999999999888776
Q ss_pred --CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccc-cCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSI-TPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~-~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++...- .+++|++||..++ .+...
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 154 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGGPG--------- 154 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCSTT---------
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCCCC---------
Confidence 689999999865221 1344568899999999999999987653 2499999998665 22221
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
...|+.||.+.+.+++.++.+. ++++++++||.+.++....... .......... ....
T Consensus 155 ------------~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~------~p~~ 214 (259)
T 3edm_A 155 ------------ALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTK--PEVRERVAGA------TSLK 214 (259)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC------------------------------
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccC--hHHHHHHHhc------CCCC
Confidence 1349999999999999998775 3999999999999886432110 0011111111 1112
Q ss_pred CcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcCccC
Q 020608 225 GSVHFKDVALAHILVYENPSA--CGR-HLCVEAISH 257 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~~~~ 257 (323)
.+.+++|+|++++.++..... .|+ +++.|+...
T Consensus 215 r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~ 250 (259)
T 3edm_A 215 REGSSEDVAGLVAFLASDDAAYVTGACYDINGGVLF 250 (259)
T ss_dssp CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSB
T ss_pred CCcCHHHHHHHHHHHcCccccCccCCEEEECCCcCC
Confidence 367899999999999875432 455 667655443
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=194.67 Aligned_cols=207 Identities=19% Similarity=0.212 Sum_probs=155.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+ .++.+. ..++.++.+|++|.++++++++
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~------~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVE------RLKALN--LPNTLCAQVDVTDKYTFDTAITRAEKIY 85 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH------HHHTTC--CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH------HHHHhh--cCCceEEEecCCCHHHHHHHHHHHHHHC
Confidence 45789999999999999999999999999999998632 122222 2368899999999998888776
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||.+++.+....
T Consensus 86 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~--------- 156 (266)
T 3p19_A 86 GPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDH--------- 156 (266)
T ss_dssp CSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTC---------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCCCC---------
Confidence 7899999999764322 345567889999999999888763 4456799999999776544321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhH-HHHHHHHcCCCCCccCcC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASM-LMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.||.+.+.+.+.++.+ +|+++++++||.|.++.......... ........ ..
T Consensus 157 ------------~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--------~~ 216 (266)
T 3p19_A 157 ------------AAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRV--------DM 216 (266)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHHH--------HT
T ss_pred ------------chHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhcc--------cc
Confidence 34999999999999998877 48999999999999986433221111 11111000 11
Q ss_pred CCcccHHHHHHHHHHhhcCCCCC
Q 020608 224 MGSVHFKDVALAHILVYENPSAC 246 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~~ 246 (323)
..+++++|+|++++.++..+...
T Consensus 217 ~r~~~pedvA~av~~l~~~~~~~ 239 (266)
T 3p19_A 217 GGVLAADDVARAVLFAYQQPQNV 239 (266)
T ss_dssp TCCBCHHHHHHHHHHHHHSCTTE
T ss_pred cCCCCHHHHHHHHHHHHcCCCCc
Confidence 22678999999999999987653
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=195.07 Aligned_cols=219 Identities=16% Similarity=0.130 Sum_probs=157.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEec-CCCcHHHHHHHhhccCC-CCCeEEEEccCCCH----hHHHHHhc
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVK-NLSDERETAHLKALEGA-DTRLRLFQIDLLDY----DAIAAAVT 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~----~~~~~~~~ 76 (323)
|++|++|||||+|+||++++++|+++|++|++++| +.+.. .+..+.+... +.++.++.+|++|. ++++++++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAA--QRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH--HHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHH--HHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHH
Confidence 45689999999999999999999999999999998 53221 1222222211 34788999999999 88887765
Q ss_pred -------CCCEEEEcccCCccCC----CC-----------CchhhhhhHHHHHHHHHHHHHhhC---Cc------CEEEE
Q 020608 77 -------GCTGVFHLASPCIVDK----VE-----------DPQNQLLNPAVKGTVNVLTAAKAL---GV------KRVVV 125 (323)
Q Consensus 77 -------~~d~Vih~a~~~~~~~----~~-----------~~~~~~~~~n~~~~~~l~~~~~~~---~~------~~~v~ 125 (323)
++|+||||||...... .. +.+...+++|+.++.++++++... +. ++||+
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~ 166 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 166 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence 7899999999754321 22 566789999999999999998763 33 79999
Q ss_pred ecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCc
Q 020608 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLN 202 (323)
Q Consensus 126 ~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~ 202 (323)
+||.+++.+.... ..|+.+|.+.+.+++.++.+. |+++++++||.+++| .. ..
T Consensus 167 isS~~~~~~~~~~---------------------~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~--~~ 222 (276)
T 1mxh_A 167 LCDAMTDLPLPGF---------------------CVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA--MP 222 (276)
T ss_dssp ECCGGGGSCCTTC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS--SC
T ss_pred ECchhhcCCCCCC---------------------eehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc--CC
Confidence 9999766543211 349999999999999988764 899999999999999 21 11
Q ss_pred hhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 203 ASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 203 ~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
......+....+ .+ +.+++++|+|++++.++.... ..|+ +++.++
T Consensus 223 --~~~~~~~~~~~p----~~-r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 270 (276)
T 1mxh_A 223 --QETQEEYRRKVP----LG-QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG 270 (276)
T ss_dssp --HHHHHHHHTTCT----TT-SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --HHHHHHHHhcCC----CC-CCCCCHHHHHHHHHHHhCccccCccCcEEEECCc
Confidence 122223322221 11 127899999999999987533 2455 556543
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=207.19 Aligned_cols=218 Identities=15% Similarity=0.093 Sum_probs=156.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC-cHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-DERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
+++||||||||+||++++++|+++|++|+++.|+++ .......+. ..+++++.+|++|.+++.++++++|+|||
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~-----~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQ-----SLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHH-----HTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhh-----cCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 458999999999999999999999999999999875 222111111 13688999999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
+|+... +.++.+++++|++.+ +++||+ |+. ... .+|..+..|. .+.|
T Consensus 86 ~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~~---g~~--------~~~~~~~~p~-----~~~y 133 (318)
T 2r6j_A 86 ALAFPQ---------------ILDQFKILEAIKVAGNIKRFLP-SDF---GVE--------EDRINALPPF-----EALI 133 (318)
T ss_dssp CCCGGG---------------STTHHHHHHHHHHHCCCCEEEC-SCC---SSC--------TTTCCCCHHH-----HHHH
T ss_pred CCchhh---------------hHHHHHHHHHHHhcCCCCEEEe-ecc---ccC--------cccccCCCCc-----chhH
Confidence 997521 346789999999988 999985 432 111 1222222221 1348
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHHHHHHHHHHh
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDVALAHILV 239 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~a~~~~~~ 239 (323)
.+|..+|.+++ +.+++++++||+.+++.. ...+......+.... . ++...+++|++|+|+++..+
T Consensus 134 -~sK~~~e~~~~----~~~~~~~~lr~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~ 201 (318)
T 2r6j_A 134 -ERKRMIRRAIE----EANIPYTYVSANCFASYF-------INYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKV 201 (318)
T ss_dssp -HHHHHHHHHHH----HTTCCBEEEECCEEHHHH-------HHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH----hcCCCeEEEEcceehhhh-------hhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHH
Confidence 99999998874 468999999998887631 111111111222221 2 33456699999999999999
Q ss_pred hcCCCCC-ccEEE-E-cCccCHHHHHHHHHHHCCC
Q 020608 240 YENPSAC-GRHLC-V-EAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 240 ~~~~~~~-~~~~~-~-~~~~~~~e~~~~i~~~~~~ 271 (323)
+.++... +.+++ + ++.+|+.|+++.+.+.+|.
T Consensus 202 l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 236 (318)
T 2r6j_A 202 ATDPRALNRVVIYRPSTNIITQLELISRWEKKIGK 236 (318)
T ss_dssp TTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred hcCccccCeEEEecCCCCccCHHHHHHHHHHHhCC
Confidence 9876543 34555 3 4789999999999998864
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=198.32 Aligned_cols=222 Identities=17% Similarity=0.151 Sum_probs=160.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+... +....+ +.++.++.+|++|.++++++++
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAV--RVANEI---GSKAFGVRVDVSSAKDAESMVEKTTA 97 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH--HHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHh---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999999998743222 222222 3478899999999999888776
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.++||++||..++.+....
T Consensus 98 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------- 170 (277)
T 4dqx_A 98 KWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADR------- 170 (277)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCTTB-------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCCCC-------
Confidence 7899999999764322 34567788999999999999887 34455699999999666543321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC---CchhHHHHHHHHcCCCCCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT---LNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.||.+.+.+++.++.++ |+++++++||.+.+|..... ...............+
T Consensus 171 --------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (277)
T 4dqx_A 171 --------------TAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAV--- 233 (277)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTST---
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcCc---
Confidence 349999999999999988774 89999999999988741100 0001111111222211
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+.+++|+|++++.++.... ..|+ +++.++
T Consensus 234 ---~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 268 (277)
T 4dqx_A 234 ---MDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGG 268 (277)
T ss_dssp ---TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred ---ccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCc
Confidence 1236789999999999997543 2455 556543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-27 Score=200.19 Aligned_cols=222 Identities=15% Similarity=0.138 Sum_probs=162.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.... .....+.+...+.++.++.+|++|.++++++++
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGD-ANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999999999999975321 112222233345688999999999998887765
Q ss_pred -CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 -GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+||||||...... +.+.+...+++|+.++.++++++... ..++||++||..++.+....
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~---------- 193 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNETL---------- 193 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCTTC----------
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCCCC----------
Confidence 7899999999753221 45567889999999999999998664 23599999999777654321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.|++|....... ......+..+. ....
T Consensus 194 -----------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~------p~~r 254 (291)
T 3ijr_A 194 -----------IDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFD--EKKVSQFGSNV------PMQR 254 (291)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSC--HHHHHHTTTTS------TTSS
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCC--HHHHHHHHccC------CCCC
Confidence 349999999999999988775 8999999999999985211000 11111111111 1223
Q ss_pred cccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 226 SVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+.+++|+|++++.++.... ..|+ +++.++
T Consensus 255 ~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 286 (291)
T 3ijr_A 255 PGQPYELAPAYVYLASSDSSYVTGQMIHVNGG 286 (291)
T ss_dssp CBCGGGTHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred CcCHHHHHHHHHHHhCCccCCCcCCEEEECCC
Confidence 6789999999999997543 3455 555443
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=197.25 Aligned_cols=221 Identities=19% Similarity=0.150 Sum_probs=153.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
++|+||||||+|+||++++++|+++|++|+++.++. ..........+...+.++.++.+|++|.++++++++
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 103 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAAN-REAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG 103 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC-hhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999998874432 222222223333334578999999999998887765
Q ss_pred CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhhC-------CcCEEEEecccccccCCCCCCCCccc
Q 020608 77 GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKAL-------GVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+||||||...... +.+.+...+++|+.++.++++++... +.++||++||.+++.+....
T Consensus 104 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------ 177 (272)
T 4e3z_A 104 RLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQ------ 177 (272)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTTT------
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCCC------
Confidence 6899999999764311 44567889999999999999987432 34689999999777654310
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+++.++.+. |+++++++||.++++...... .......+..+.
T Consensus 178 --------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~~------ 235 (272)
T 4e3z_A 178 --------------YVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGG--LPDRAREMAPSV------ 235 (272)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC--------------------CC------
T ss_pred --------------cchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccC--ChHHHHHHhhcC------
Confidence 0349999999999999988775 899999999999998643211 111111111111
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
....+.+++|+|++++.++.... ..|+ +++.+
T Consensus 236 ~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdg 270 (272)
T 4e3z_A 236 PMQRAGMPEEVADAILYLLSPSASYVTGSILNVSG 270 (272)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CcCCCcCHHHHHHHHHHHhCCccccccCCEEeecC
Confidence 11236789999999999997533 2344 66654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=195.34 Aligned_cols=223 Identities=15% Similarity=0.088 Sum_probs=158.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+. .....+..+.+...+.++.++.+|++|.++++++++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK-EDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCC-hHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999999999999832 111112222232224568899999999998888776
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++.. .+ .++||++||..+..+...
T Consensus 84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 154 (261)
T 1gee_A 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPL--------- 154 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTT---------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCCC---------
Confidence 789999999975432 23456778999999999999888643 34 579999999865543221
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
...|+.+|.+.+.+++.++.+. +++++++|||.+++|..... .........+....+ .
T Consensus 155 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~------~ 215 (261)
T 1gee_A 155 ------------FVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEK-FADPEQRADVESMIP------M 215 (261)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHH-HHSHHHHHHHHTTCT------T
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhc-ccChhHHHHHHhcCC------C
Confidence 1459999999999998887664 89999999999999863210 000111222222211 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+++++|+|++++.++.... ..|+ +++.++
T Consensus 216 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 249 (261)
T 1gee_A 216 GYIGEPEEIAAVAAWLASSEASYVTGITLFADGG 249 (261)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCC
Confidence 237899999999999987432 2454 556543
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=194.49 Aligned_cols=186 Identities=14% Similarity=0.079 Sum_probs=145.4
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC---CCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG---CTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~d~Vi 82 (323)
|+||||||+|+||++++++|+ +|++|++++|+.. ++.+|++|.+++++++++ +|+||
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~~d~vi 63 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITNIDSIKKMYEQVGKVDAIV 63 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------------------SEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------------------ceeeecCCHHHHHHHHHHhCCCCEEE
Confidence 479999999999999999999 9999999998752 368999999999988875 89999
Q ss_pred EcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCCCCCChhhh
Q 020608 83 HLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC 155 (323)
Q Consensus 83 h~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~ 155 (323)
|+||...... +.+.+...+++|+.++.++++++.+. + ++||++||..++.+...
T Consensus 64 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~~------------------ 124 (202)
T 3d7l_A 64 SATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMEDPIVQ------------------ 124 (202)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTSCCTT------------------
T ss_pred ECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcCCCCc------------------
Confidence 9999653321 23455678899999999999998765 3 69999999855443221
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHH
Q 020608 156 RQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVA 233 (323)
Q Consensus 156 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a 233 (323)
...|+.+|.+.|.+++.++.+. |++++++|||.++++... ...+ .....+++++|+|
T Consensus 125 ---~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~------------~~~~------~~~~~~~~~~dva 183 (202)
T 3d7l_A 125 ---GASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK------------LEPF------FEGFLPVPAAKVA 183 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH------------HGGG------STTCCCBCHHHHH
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh------------hhhh------ccccCCCCHHHHH
Confidence 1449999999999999988764 899999999999997421 1111 1234589999999
Q ss_pred HHHHHhhcCCCCCccEEE
Q 020608 234 LAHILVYENPSACGRHLC 251 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (323)
++++.++.....+..|++
T Consensus 184 ~~~~~~~~~~~~G~~~~v 201 (202)
T 3d7l_A 184 RAFEKSVFGAQTGESYQV 201 (202)
T ss_dssp HHHHHHHHSCCCSCEEEE
T ss_pred HHHHHhhhccccCceEec
Confidence 999988854433334664
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=196.87 Aligned_cols=222 Identities=16% Similarity=0.082 Sum_probs=160.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+||||||+|+||++++++|+++|++|+++.|+..+. .....+.+...+.++.++.+|++|.+++.++++
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 103 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEV-ADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQ 103 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 556789999999999999999999999999999999964222 112222233334578999999999998888775
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||...... +.+.+...+++|+.++.++++++.. .+.+++|++||..+..+....
T Consensus 104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------- 176 (271)
T 4iin_A 104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQ------- 176 (271)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC-------
T ss_pred hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCCCc-------
Confidence 7899999999764322 3456788999999999999888743 355799999999776654321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+++.++.+ .++++++++||.+.++...... ......... ...
T Consensus 177 --------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~---~~~~~~~~~------~~~ 233 (271)
T 4iin_A 177 --------------TNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLK---DELKADYVK------NIP 233 (271)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------CGG------GCT
T ss_pred --------------hHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhc---HHHHHHHHh------cCC
Confidence 34999999999999998877 5899999999999988643211 000111111 111
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 234 ~~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdG 267 (271)
T 4iin_A 234 LNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNG 267 (271)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCC
Confidence 2237799999999999997543 3455 55544
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=198.72 Aligned_cols=220 Identities=18% Similarity=0.123 Sum_probs=161.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+..... +....+...+.++.++.+|++|.++++++++
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAE--GIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF 103 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH--HHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999998643222 2222232224578899999999998888766
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||...... +.+.+...+++|+.++.++++++. +.+.++||++||.+++.+....
T Consensus 104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 174 (270)
T 3ftp_A 104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQ--------- 174 (270)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTB---------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCc---------
Confidence 7899999999764322 445678899999999999999874 2345699999999777654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ...........+ ..
T Consensus 175 ------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~---~~~~~~~~~~~p------~~ 233 (270)
T 3ftp_A 175 ------------VNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLP---QEQQTALKTQIP------LG 233 (270)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSC---HHHHHHHHTTCT------TC
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcC---HHHHHHHHhcCC------CC
Confidence 34999999999999998877 4899999999999987432111 111222222221 12
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.+.+++|+|++++.++.... ..|+ +++.++
T Consensus 234 r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 266 (270)
T 3ftp_A 234 RLGSPEDIAHAVAFLASPQAGYITGTTLHVNGG 266 (270)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCHHHHHHHHHHHhCCCcCCccCcEEEECCC
Confidence 36799999999999986433 3455 566543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-27 Score=197.83 Aligned_cols=222 Identities=16% Similarity=0.135 Sum_probs=161.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+.. .+..+++...+.++.++.+|++|.++++++++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERL--EDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHH--HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999964322 22333333335678999999999999888765
Q ss_pred -CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+||||||.... ..+.+.+...+++|+.++.++++++.. .+ ++||++||..+..+....
T Consensus 87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~-------- 157 (264)
T 3ucx_A 87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHSQAKY-------- 157 (264)
T ss_dssp SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCCCTTC--------
T ss_pred CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccCCCcc--------
Confidence 68999999987422 124466788999999999999998743 23 699999999766554321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc--------hhHHHHHHHHcCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN--------ASMLMLLRLLQGC 215 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~--------~~~~~~~~~~~g~ 215 (323)
..|+.+|.+.+.+++.++.+ +|+++++++||.+++|....... ...........+.
T Consensus 158 -------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (264)
T 3ucx_A 158 -------------GAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGS 224 (264)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccC
Confidence 34999999999999998877 58999999999999975321000 0011112222221
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
....+.+++|+|++++.++.... ..|+ +++.++
T Consensus 225 ------p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 260 (264)
T 3ucx_A 225 ------DLKRLPTEDEVASAILFMASDLASGITGQALDVNCG 260 (264)
T ss_dssp ------SSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------CcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 11237799999999999987533 3455 556543
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=191.45 Aligned_cols=200 Identities=15% Similarity=0.100 Sum_probs=153.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-------EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-------TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
+|+||||||+|+||++++++|+++|+ +|++++|+..... .....+...+.++.++.+|++|.++++++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 79 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLE--KISLECRAEGALTDTITADISDMADVRRLTTH 79 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHH--HHHHHHHTTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHH--HHHHHHHccCCeeeEEEecCCCHHHHHHHHHH
Confidence 58999999999999999999999999 9999998643222 2222333334578899999999998888776
Q ss_pred ------CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCc
Q 020608 77 ------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++. +.+.++||++||.+++.+...
T Consensus 80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----- 154 (244)
T 2bd0_A 80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRH----- 154 (244)
T ss_dssp HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-----
T ss_pred HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCCC-----
Confidence 689999999975332 2345678899999999999999974 345679999999966554321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
...|+.+|.+.+.+++.++.+ +|++++++|||.+++|....... ..
T Consensus 155 ----------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~------------~~--- 203 (244)
T 2bd0_A 155 ----------------SSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD------------EM--- 203 (244)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS------------TT---
T ss_pred ----------------CchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc------------cc---
Confidence 144999999999999887754 58999999999999986532110 00
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCCC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
...+++++|+|++++.++..+..
T Consensus 204 ---~~~~~~~~dva~~~~~l~~~~~~ 226 (244)
T 2bd0_A 204 ---QALMMMPEDIAAPVVQAYLQPSR 226 (244)
T ss_dssp ---GGGSBCHHHHHHHHHHHHTSCTT
T ss_pred ---cccCCCHHHHHHHHHHHHhCCcc
Confidence 12478999999999999986543
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=195.11 Aligned_cols=223 Identities=16% Similarity=0.115 Sum_probs=157.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC--CCCeEEEEccCCCHhHHHHHhc---
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+... +.++.++.+|++|.++++++++
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 87 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLE--ASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 87 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 357799999999999999999999999999999999753222 222222111 3478899999999999888776
Q ss_pred ----CCCEEEEcccCCcc-C----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ----GCTGVFHLASPCIV-D----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+|||+||.... . .+.+.+...+++|+.++.++++++ ++.+.++||++||..++.+...
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 161 (267)
T 1iy8_A 88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGN------ 161 (267)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSS------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCCCC------
Confidence 68999999997533 1 134567889999999998777765 3445689999999966554321
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCC-----CchhHHHHHHHHcCC
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPT-----LNASMLMLLRLLQGC 215 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~-----~~~~~~~~~~~~~g~ 215 (323)
...|+.+|.+.+.+.+.++.+ +|+++++++||.+++|..... ..........+....
T Consensus 162 ---------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (267)
T 1iy8_A 162 ---------------QSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN 226 (267)
T ss_dssp ---------------BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred ---------------CccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC
Confidence 134999999999999988776 489999999999998742110 000000011222111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
+ ...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 227 ----p--~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdG 261 (267)
T 1iy8_A 227 ----P--SKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDG 261 (267)
T ss_dssp ----T--TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ----C--CCCCcCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence 1 1236799999999999987542 3455 45543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=194.70 Aligned_cols=210 Identities=18% Similarity=0.179 Sum_probs=151.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+.. .+..+.+...+.++.++.+|++|.++++++++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~--~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARI--EAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999999999874322 22333333334578899999999998887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||...... +.+.+...+++|+.++.++++++. +.+.++||++||.+++.+....
T Consensus 80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~--------- 150 (264)
T 3tfo_A 80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTA--------- 150 (264)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTC---------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCCCC---------
Confidence 7899999999764322 445678899999999999988873 3455799999999776654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
..|+.||.+.+.+.+.++.+. |+++++++||.+.++......... .. . ........+
T Consensus 151 ------------~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~~~--~~-~-------~~~~~~~~~ 208 (264)
T 3tfo_A 151 ------------AVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITHEE--TM-A-------AMDTYRAIA 208 (264)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC---------------------------------C
T ss_pred ------------hhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccchh--HH-H-------HHHhhhccC
Confidence 349999999999999998876 999999999999987543211000 00 0 000001114
Q ss_pred ccHHHHHHHHHHhhcCCCC
Q 020608 227 VHFKDVALAHILVYENPSA 245 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~~ 245 (323)
+.++|+|++++.++..+..
T Consensus 209 ~~pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 209 LQPADIARAVRQVIEAPQS 227 (264)
T ss_dssp CCHHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHhcCCcc
Confidence 6899999999999987765
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=196.27 Aligned_cols=218 Identities=13% Similarity=0.093 Sum_probs=155.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+..... +..+.+ +.++.++.+|++|.++++++++
T Consensus 24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (266)
T 3grp_A 24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLK--EIAADL---GKDVFVFSANLSDRKSIKQLAEVAERE 98 (266)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHH---CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHh---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998643222 222222 3478999999999999888775
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||..++.+....
T Consensus 99 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~-------- 170 (266)
T 3grp_A 99 MEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQ-------- 170 (266)
T ss_dssp HTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------CH--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCCCc--------
Confidence 789999999976432 134567889999999977777775 34456799999998766554321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+.+|...... ......+....+ .
T Consensus 171 -------------~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---~~~~~~~~~~~p------~ 228 (266)
T 3grp_A 171 -------------TNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLN---EKQKEAIMAMIP------M 228 (266)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCC---HHHHHHHHTTCT------T
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccC---HHHHHHHHhcCC------C
Confidence 349999999999999888764 899999999999987533211 112223333222 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|.+++.++.... ..|+ +++.++
T Consensus 229 ~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG 262 (266)
T 3grp_A 229 KRMGIGEEIAFATVYLASDEAAYLTGQTLHINGG 262 (266)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 236789999999999987543 2455 555443
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=199.91 Aligned_cols=223 Identities=11% Similarity=0.070 Sum_probs=162.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+. ..+..+++...+.++.++.+|++|.++++++++
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~--~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSR--VAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQ 100 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHH--HHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999886432 223333343335678999999999999888776
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++.. .+.++||++||..+..+....
T Consensus 101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~-------- 172 (271)
T 4ibo_A 101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATV-------- 172 (271)
T ss_dssp TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTC--------
T ss_pred CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCCCc--------
Confidence 689999999975432 24556788999999999999888643 345799999998766554321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+ +|+++++++||.+.++...... .............+ .
T Consensus 173 -------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~p------~ 232 (271)
T 4ibo_A 173 -------------APYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALI-DNPEFDAWVKARTP------A 232 (271)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-HCHHHHHHHHHHST------T
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcc-cCHHHHHHHHhcCC------C
Confidence 34999999999999998877 4899999999999998532100 00111222222221 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|.+++.++.... ..|+ +++.++
T Consensus 233 ~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG 266 (271)
T 4ibo_A 233 KRWGKPQELVGTAVFLSASASDYVNGQIIYVDGG 266 (271)
T ss_dssp CSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCcEEEECCC
Confidence 236689999999999987533 3455 556543
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=194.89 Aligned_cols=218 Identities=17% Similarity=0.109 Sum_probs=157.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEE-ecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHAT-VKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
+|+||||||+|+||++++++|+++|++|+++ .|+..... ...+.+...+.++.++.+|++|.++++++++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAE--EVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH--HHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHH--HHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999999999985 56532221 2222222223468889999999999888776
Q ss_pred CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++.+ .+.++||++||.+++++....
T Consensus 79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~---------- 148 (244)
T 1edo_A 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQ---------- 148 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC----------
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCCCC----------
Confidence 689999999975432 23456778999999999999998754 356799999999776654321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|.+.+.+++.++.+ .|++++++|||.+++|...... ...........+ ...
T Consensus 149 -----------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~------~~~ 208 (244)
T 1edo_A 149 -----------ANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLG---EDMEKKILGTIP------LGR 208 (244)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC---HHHHHHHHTSCT------TCS
T ss_pred -----------ccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcC---hHHHHHHhhcCC------CCC
Confidence 34999999999999888776 4899999999999998533211 112222222211 123
Q ss_pred cccHHHHHHHHHHhhcCCC---CCcc-EEEEcC
Q 020608 226 SVHFKDVALAHILVYENPS---ACGR-HLCVEA 254 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~---~~~~-~~~~~~ 254 (323)
+++++|+|++++.++..+. ..|+ +++.+.
T Consensus 209 ~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG 241 (244)
T 1edo_A 209 TGQPENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp CBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred CCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCC
Confidence 7899999999999984332 2344 566543
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-27 Score=197.78 Aligned_cols=229 Identities=18% Similarity=0.166 Sum_probs=162.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-GADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|++++|+||||||+|+||++++++|+++|++|++++|+..+.... .+.+. ..+.++.++.+|++|.++++++++
T Consensus 10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~--~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 87 (265)
T 1h5q_A 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEV--TEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID 87 (265)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHH--HHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHH--HHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999976443221 12221 113478899999999998887765
Q ss_pred ----CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC----C-cCEEEEecccccccCCCCCCCCcc
Q 020608 77 ----GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL----G-VKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++... + .++||++||..++.+....
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----- 162 (265)
T 1h5q_A 88 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----- 162 (265)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE-----
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc-----
Confidence 489999999975432 134566788999999999999997432 2 3799999998665543210
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..+ ..+...|+.+|.+.+.+++.++.+. |++++++|||.++++...... ...........+
T Consensus 163 ---~~~------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~---- 226 (265)
T 1h5q_A 163 ---LNG------SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMD---KKIRDHQASNIP---- 226 (265)
T ss_dssp ---TTE------ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC---HHHHHHHHHTCT----
T ss_pred ---ccc------cccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccc---hhHHHHHHhcCc----
Confidence 000 0112559999999999999988763 899999999999998643221 111222222221
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+++++|+|++++.++.... ..|+ +++.++
T Consensus 227 --~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 261 (265)
T 1h5q_A 227 --LNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 261 (265)
T ss_dssp --TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred --ccCCCCHHHHHHHHHhhccCchhcCcCcEEEecCC
Confidence 1237799999999999987542 2344 667554
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=204.60 Aligned_cols=225 Identities=14% Similarity=0.101 Sum_probs=157.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC-c--H-HHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-D--E-RETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~--~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
+||+|+|||||||||++++++|+++|++|+++.|+++ . . ...+.+..+. ..+++++.+|++|.+++.++++++|
T Consensus 1 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~~~~d 78 (307)
T 2gas_A 1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQ--SLGVILLEGDINDHETLVKAIKQVD 78 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred CCcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHH--hCCCEEEEeCCCCHHHHHHHHhCCC
Confidence 3689999999999999999999999999999999861 1 1 2222222221 1368899999999999999999999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
+|||+|+... +.++.+++++|++.+ +++||+ |+. .... +|..+..|.
T Consensus 79 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~~---g~~~--------~~~~~~~p~----- 126 (307)
T 2gas_A 79 IVICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-SEF---GLDV--------DRHDAVEPV----- 126 (307)
T ss_dssp EEEECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-SCC---SSCT--------TSCCCCTTH-----
T ss_pred EEEECCcccc---------------cccHHHHHHHHHhcCCceEEee-ccc---ccCc--------ccccCCCcc-----
Confidence 9999998631 346788999999988 999983 432 1111 122222221
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHHHHHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDVALA 235 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~a~~ 235 (323)
.+.| .+|..+|.+++ +.+++++++||+.++++........ ......+.... . ++..++++|++|+|++
T Consensus 127 ~~~y-~sK~~~e~~~~----~~~i~~~~lrp~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~ 197 (307)
T 2gas_A 127 RQVF-EEKASIRRVIE----AEGVPYTYLCCHAFTGYFLRNLAQL----DATDPPRDKVVILGDGNVKGAYVTEADVGTF 197 (307)
T ss_dssp HHHH-HHHHHHHHHHH----HHTCCBEEEECCEETTTTGGGTTCT----TCSSCCSSEEEEETTSCSEEEEECHHHHHHH
T ss_pred hhHH-HHHHHHHHHHH----HcCCCeEEEEcceeecccccccccc----ccccCCCCeEEEecCCCcceEEeeHHHHHHH
Confidence 1349 99999998875 4589999999999988642211000 00000111111 2 3345669999999999
Q ss_pred HHHhhcCCCCCc-cEEE-E-cCccCHHHHHHHHHHHCCC
Q 020608 236 HILVYENPSACG-RHLC-V-EAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 236 ~~~~~~~~~~~~-~~~~-~-~~~~~~~e~~~~i~~~~~~ 271 (323)
++.++.++...+ .+++ + ++.+|+.|+++.+.+.+|.
T Consensus 198 ~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 236 (307)
T 2gas_A 198 TIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGK 236 (307)
T ss_dssp HHHHHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTS
T ss_pred HHHHHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhCC
Confidence 999998765434 3554 4 4689999999999998864
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=191.70 Aligned_cols=201 Identities=16% Similarity=0.092 Sum_probs=136.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|+||+||||||||+||++++++|+++| ++|+++.|+++... .+ ...+++++.+|++|.++++++++++|+|
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~D~v 92 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIH------KP--YPTNSQIIMGDVLNHAALKQAMQGQDIV 92 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC------SS--CCTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhc------cc--ccCCcEEEEecCCCHHHHHHHhcCCCEE
Confidence 567899999999999999999999999 89999999753211 11 1247899999999999999999999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
||+|+.... ...+.++++++++.++++||++||.+++...... .....+..+..
T Consensus 93 v~~a~~~~~--------------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~--~~~~~~~~~~~---------- 146 (236)
T 3qvo_A 93 YANLTGEDL--------------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGK--FVEWNNAVIGE---------- 146 (236)
T ss_dssp EEECCSTTH--------------HHHHHHHHHHHHHTTCCEEEEECCCCC------------------CG----------
T ss_pred EEcCCCCch--------------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCcc--cccchhhcccc----------
Confidence 999975211 2357789999999999999999999665443211 11222222211
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhc
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
+...+..+|..+ +..+++++++|||.++++...... ....+. .....+++++|+|++++.++.
T Consensus 147 ~~~~~~~~~~~l----~~~gi~~~~vrPg~i~~~~~~~~~--------~~~~~~-----~~~~~~i~~~DvA~~i~~ll~ 209 (236)
T 3qvo_A 147 PLKPFRRAADAI----EASGLEYTILRPAWLTDEDIIDYE--------LTSRNE-----PFKGTIVSRKSVAALITDIID 209 (236)
T ss_dssp GGHHHHHHHHHH----HTSCSEEEEEEECEEECCSCCCCE--------EECTTS-----CCSCSEEEHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHCCCCEEEEeCCcccCCCCcceE--------EeccCC-----CCCCcEECHHHHHHHHHHHHc
Confidence 233344444444 367999999999999997532110 000111 011247999999999999998
Q ss_pred CCC--CCccEEEEcC
Q 020608 242 NPS--ACGRHLCVEA 254 (323)
Q Consensus 242 ~~~--~~~~~~~~~~ 254 (323)
++. .+..|++++.
T Consensus 210 ~~~~~~g~~~~i~~~ 224 (236)
T 3qvo_A 210 KPEKHIGENIGINQP 224 (236)
T ss_dssp STTTTTTEEEEEECS
T ss_pred CcccccCeeEEecCC
Confidence 776 3344777643
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=193.55 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=160.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc--
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
|.+++|++|||||+|+||++++++|+++|++|++++|+.+... +..+++.. ....+.++.+|+++.++++++++
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVN--ETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKY 83 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH--HHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHC
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhc
Confidence 3456789999999999999999999999999999998753322 22222221 13467889999999999888776
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||...... ..+.+...+++|+.++.++++++ ++.+.+++|++||..++.+....
T Consensus 84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 154 (267)
T 3t4x_A 84 PKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEM--------- 154 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCTTC---------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCCcc---------
Confidence 7899999999764322 34567788999999988887775 34566799999999766544321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCC--------CCchhHHHHHHHHcCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPP--------TLNASMLMLLRLLQGCT 216 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~--------~~~~~~~~~~~~~~g~~ 216 (323)
..|+.||.+.+.+.+.++.+. |+++++++||.+.+|.... .................
T Consensus 155 ------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (267)
T 3t4x_A 155 ------------AHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENR 222 (267)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHC
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccC
Confidence 449999999999999998775 7999999999998863110 00000111111111110
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+ ...+.+++|+|++++.++.... ..|+ +++.++
T Consensus 223 ~~~~--~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 261 (267)
T 3t4x_A 223 PTSI--IQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGG 261 (267)
T ss_dssp TTCS--SCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred Cccc--ccCccCHHHHHHHHHHHcCccccCccCCeEEECCC
Confidence 0001 1237899999999999987532 3455 566543
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=194.13 Aligned_cols=216 Identities=19% Similarity=0.142 Sum_probs=156.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+. ... .+.+ ..++.++.+|++|.++++++++
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~--~~~---~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG--EDV---VADL---GDRARFAAADVTDEAAVASALDLAET 76 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC--HHH---HHHT---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCch--HHH---HHhc---CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 667889999999999999999999999999999999853 211 1122 3478999999999999888776
Q ss_pred --CCCEEEEcccCCccC--------CCCCchhhhhhHHHHHHHHHHHHHhh------------CCcCEEEEecccccccC
Q 020608 77 --GCTGVFHLASPCIVD--------KVEDPQNQLLNPAVKGTVNVLTAAKA------------LGVKRVVVTSSISSITP 134 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~------------~~~~~~v~~SS~~~~~~ 134 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++.. .+.+++|++||.+++.+
T Consensus 77 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 156 (257)
T 3tl3_A 77 MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDG 156 (257)
T ss_dssp HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CC
T ss_pred hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCC
Confidence 789999999975321 34566789999999999999999753 23459999999966543
Q ss_pred CCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHH
Q 020608 135 SPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRL 211 (323)
Q Consensus 135 ~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~ 211 (323)
... ...|+.||.+.+.+++.++.+ .|+++++++||.|.+|...... .......
T Consensus 157 ~~~---------------------~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~---~~~~~~~ 212 (257)
T 3tl3_A 157 QIG---------------------QAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLP---EEARASL 212 (257)
T ss_dssp HHH---------------------HHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---C---HHHHHHH
T ss_pred CCC---------------------CccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhcc---HHHHHHH
Confidence 321 134999999999999988876 4899999999999998654321 1122222
Q ss_pred HcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCcc-EEEEc
Q 020608 212 LQGCTDTYENFFMGSVHFKDVALAHILVYENPSACGR-HLCVE 253 (323)
Q Consensus 212 ~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~ 253 (323)
....+. ...+.+++|+|++++.+++.+...|+ +++.+
T Consensus 213 ~~~~~~-----~~r~~~p~dva~~v~~l~s~~~itG~~i~vdG 250 (257)
T 3tl3_A 213 GKQVPH-----PSRLGNPDEYGALAVHIIENPMLNGEVIRLDG 250 (257)
T ss_dssp HHTSSS-----SCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred HhcCCC-----CCCccCHHHHHHHHHHHhcCCCCCCCEEEECC
Confidence 222211 02367899999999999987666676 44543
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=202.27 Aligned_cols=224 Identities=18% Similarity=0.129 Sum_probs=160.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|++|||||+|+||++++++|+++|++|+++.|+..........+.+...+.++.++.+|++|.++++++++
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999888643222222222233334578999999999998887765
Q ss_pred --CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhhCCc--CEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKALGV--KRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++...-. ++||++||..++.+....
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~--------- 196 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSPHL--------- 196 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCTTC---------
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCCCc---------
Confidence 789999999975321 24566788999999999999999866532 499999999766544321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.++ |+++++++||.|++|......... .....+.. .....
T Consensus 197 ------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~-~~~~~~~~------~~p~~ 257 (294)
T 3r3s_A 197 ------------LDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQ-DKIPQFGQ------QTPMK 257 (294)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCG-GGSTTTTT------TSTTS
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCH-HHHHHHHh------cCCCC
Confidence 349999999999999988775 899999999999987421100000 00000000 11112
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.+.+++|+|++++.++.... ..|+ +++.+
T Consensus 258 r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 289 (294)
T 3r3s_A 258 RAGQPAELAPVYVYLASQESSYVTAEVHGVCG 289 (294)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 36789999999999987543 2454 56654
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=203.49 Aligned_cols=241 Identities=16% Similarity=0.106 Sum_probs=156.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+.++... ....+.. ...++.++.+|++|.++++++++
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~--~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDK--ALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHH--HHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHH--HHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999997543222 2222221 12378999999999999888775
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC----------CcCEEEEecccccccCCCCCC
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL----------GVKRVVVTSSISSITPSPKWP 139 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~~~~v~~SS~~~~~~~~~~~ 139 (323)
++|+|||+||...... +.+.+...+++|+.|+.++++++... +.++||++||.+++.+.+..
T Consensus 84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~~~- 162 (319)
T 3ioy_A 84 RFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSP- 162 (319)
T ss_dssp HTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCSSS-
T ss_pred hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCCCC-
Confidence 6799999999754322 34567889999999999999987432 24689999999776654321
Q ss_pred CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC
Q 020608 140 ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT 216 (323)
Q Consensus 140 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~ 216 (323)
..|+.||.+.+.+++.++.+ .|+++++++||.|.+|.......... .+........
T Consensus 163 --------------------~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~-~~~~~~~~~~ 221 (319)
T 3ioy_A 163 --------------------GIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPD-ALKGEVKPVD 221 (319)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-----------------------
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCch-hhcccccchh
Confidence 34999999777777776655 48999999999999986432211110 0000000000
Q ss_pred ---CC-ccCcCCCcccHHHHHHHHHHhhcCCCCCccEEEEcCc--cCHHHHHHHHHHHCC
Q 020608 217 ---DT-YENFFMGSVHFKDVALAHILVYENPSACGRHLCVEAI--SHYGDFVAKVAELYP 270 (323)
Q Consensus 217 ---~~-~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~i~~~~~ 270 (323)
.. ........++++|+|++++.+++++. .+.+++.. -.+++....+...++
T Consensus 222 ~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~ 278 (319)
T 3ioy_A 222 KTAVERLAGVHEFGMEPDVIGARVIEAMKANR---LHIFSHPDHKEELREVFDEIIAEYQ 278 (319)
T ss_dssp -------CCGGGSSBCHHHHHHHHHHHHHTTC---SEECCCSTTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHcCC---CEEEcCHHHHHHHHHHHHHHHHhhh
Confidence 00 01111113799999999999998753 24443322 133444444444443
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-26 Score=194.38 Aligned_cols=223 Identities=16% Similarity=0.107 Sum_probs=157.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +....+ +.++.++.+|++|.++++++++
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAAD--AAATKI---GCGAAACRVDVSDEQQIIAMVDACVAAF 101 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHH--HHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHc---CCcceEEEecCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999998643222 222233 3478899999999998887765
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++.. .+.++||++||..+..+....
T Consensus 102 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~--------- 172 (277)
T 3gvc_A 102 GGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGT--------- 172 (277)
T ss_dssp SSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTB---------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCc---------
Confidence 789999999986432 24456788999999999999998743 455799999999766544321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFF 223 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+ +|+++++++||.+++|.......... .......... .....
T Consensus 173 ------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 237 (277)
T 3gvc_A 173 ------------GAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFD---GALGAGGARSMIARLQ 237 (277)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC---------CCHHHHHHHHH
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcch---hhHHHHhhhhhhhccc
Confidence 34999999999999988876 58999999999999874210000000 0000000000 00001
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|++++.++.... ..|+ +++.++
T Consensus 238 ~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 271 (277)
T 3gvc_A 238 GRMAAPEEMAGIVVFLLSDDASMITGTTQIADGG 271 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCCCCHHHHHHHHHHHcCCccCCccCcEEEECCc
Confidence 236789999999999997543 3455 556543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=207.00 Aligned_cols=222 Identities=15% Similarity=0.150 Sum_probs=158.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC-Cc--HHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL-SD--ERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+||+|+|||||||||++++++|+++|++|+++.|++ +. ....+.+..+. ..+++++.+|++|.+++.++++++|+
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~--~~~v~~v~~D~~d~~~l~~a~~~~d~ 80 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFR--SMGVTIIEGEMEEHEKMVSVLKQVDI 80 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhh--cCCcEEEEecCCCHHHHHHHHcCCCE
Confidence 578999999999999999999999999999999986 21 12222222221 13689999999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
|||+|+... +.++.+++++|++.+ +++||+ |+. +.. .+|+.+..|. .
T Consensus 81 vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~~----g~~-------~~~~~~~~p~-----~ 128 (321)
T 3c1o_A 81 VISALPFPM---------------ISSQIHIINAIKAAGNIKRFLP-SDF----GCE-------EDRIKPLPPF-----E 128 (321)
T ss_dssp EEECCCGGG---------------SGGGHHHHHHHHHHCCCCEEEC-SCC----SSC-------GGGCCCCHHH-----H
T ss_pred EEECCCccc---------------hhhHHHHHHHHHHhCCccEEec-ccc----ccC-------ccccccCCCc-----c
Confidence 999998531 456788999999988 999983 332 111 1222222221 1
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHH---HHHcCCCCC-c--cCcCCCcccHHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLL---RLLQGCTDT-Y--ENFFMGSVHFKDVA 233 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~---~~~~g~~~~-~--~~~~~~~i~v~D~a 233 (323)
+.| .+|..+|.+++ +.+++++++||+.++++.. ..+.. ....+.... . ++..++++|++|+|
T Consensus 129 ~~y-~sK~~~e~~~~----~~~~~~~~lrp~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva 196 (321)
T 3c1o_A 129 SVL-EKKRIIRRAIE----AAALPYTYVSANCFGAYFV-------NYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIA 196 (321)
T ss_dssp HHH-HHHHHHHHHHH----HHTCCBEEEECCEEHHHHH-------HHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHH
T ss_pred hHH-HHHHHHHHHHH----HcCCCeEEEEeceeccccc-------cccccccccccccCceEEecCCCcceeEeeHHHHH
Confidence 459 99999998885 4589999999999887521 01110 001122221 2 34456699999999
Q ss_pred HHHHHhhcCCCCCcc-EEEE--cCccCHHHHHHHHHHHCCC
Q 020608 234 LAHILVYENPSACGR-HLCV--EAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~-~~~~--~~~~~~~e~~~~i~~~~~~ 271 (323)
+++..++.++...+. |++. ++.+|+.|+++.+.+.+|.
T Consensus 197 ~~~~~~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~ 237 (321)
T 3c1o_A 197 KYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGL 237 (321)
T ss_dssp HHHHHHHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCC
Confidence 999999987654344 6653 4789999999999998864
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=196.92 Aligned_cols=223 Identities=17% Similarity=0.136 Sum_probs=158.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+||||||+|+||++++++|+++|++|++++|+.......... +...+.++.++.+|++|.++++++++
T Consensus 30 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 107 (279)
T 3ctm_A 30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHL--QKTYGVHSKAYKCNISDPKSVEETISQQEK 107 (279)
T ss_dssp GCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHH--HHHHCSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--HHhcCCcceEEEeecCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999987654332221 11113468899999999998888775
Q ss_pred ---CCCEEEEcccCCcc------CCCCCchhhhhhHHHHHH----HHHHHHHhhCCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIV------DKVEDPQNQLLNPAVKGT----VNVLTAAKALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~------~~~~~~~~~~~~~n~~~~----~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+|||+||.... ....+.+...+++|+.++ +.++..+++.+.++||++||.+++.+...
T Consensus 108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------ 181 (279)
T 3ctm_A 108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIP------ 181 (279)
T ss_dssp HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC---------
T ss_pred HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCCCC------
Confidence 48999999997543 112345677899999994 56666666666789999999865443100
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
. ....|+.+|.+.|.+++.++.++ + ++++++||.+.++...... ......+....+
T Consensus 182 -------~------~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~p---- 240 (279)
T 3ctm_A 182 -------Q------LQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFAS---KDMKAKWWQLTP---- 240 (279)
T ss_dssp -------C------CHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCC---HHHHHHHHHHST----
T ss_pred -------C------CcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccC---hHHHHHHHHhCC----
Confidence 0 01459999999999999998774 6 9999999999998653211 111222211111
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+++++|+|++++.++.... ..|+ +++.++
T Consensus 241 --~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG 275 (279)
T 3ctm_A 241 --LGREGLTQELVGGYLYLASNASTFTTGSDVVIDGG 275 (279)
T ss_dssp --TCSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --ccCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 1237799999999999997532 3444 556543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=190.88 Aligned_cols=226 Identities=19% Similarity=0.159 Sum_probs=162.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC-------------cHHHH-HHHhhccCCCCCeEEEEccCCCH
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-------------DERET-AHLKALEGADTRLRLFQIDLLDY 68 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~ 68 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.. ..+.. +..+.+...+.++.++.+|++|.
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 88 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY 88 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 56799999999999999999999999999999998732 12222 22333444456899999999999
Q ss_pred hHHHHHhc-------CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhhC----C-cCEEEEeccccc
Q 020608 69 DAIAAAVT-------GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKAL----G-VKRVVVTSSISS 131 (323)
Q Consensus 69 ~~~~~~~~-------~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~v~~SS~~~ 131 (323)
++++++++ ++|+||||||...... +.+.+...+++|+.++.++++++... + .++||++||..+
T Consensus 89 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 168 (286)
T 3uve_A 89 DALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGG 168 (286)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence 99888765 7899999999754322 45667889999999999999987432 2 469999999977
Q ss_pred ccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc------
Q 020608 132 ITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN------ 202 (323)
Q Consensus 132 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~------ 202 (323)
+.+.... ..|+.||.+.+.+.+.++.+ +|+++++++||.+.+|.......
T Consensus 169 ~~~~~~~---------------------~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~ 227 (286)
T 3uve_A 169 LKAYPHT---------------------GHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRP 227 (286)
T ss_dssp TSCCTTC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCT
T ss_pred ccCCCCc---------------------cHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccc
Confidence 6554321 34999999999999998877 48999999999999986532100
Q ss_pred ----hhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 203 ----ASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 203 ----~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
............. ...+ ..+.+++|+|.+++.++.... ..|+ +++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~-~~~p---~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdG 281 (286)
T 3uve_A 228 DLENPGPDDMAPICQMF-HTLP---IPWVEPIDISNAVLFFASDEARYITGVTLPIDA 281 (286)
T ss_dssp TSSSCCHHHHHHHHHTT-CSSS---CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cccccchhhHHHHHHhh-hccC---CCcCCHHHHHHHHHHHcCccccCCcCCEEeECC
Confidence 0000000100000 0011 347899999999999997543 3455 55544
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=194.07 Aligned_cols=224 Identities=15% Similarity=0.089 Sum_probs=156.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+. ...+..+.+... +.++.++.+|++|.++++++++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAA-EIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHH-HHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcch-HHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999987532 011222222211 3468889999999999888775
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+||||||..... ...+.+...+++|+.++.++++++. +.+.++||++||.+++.+...
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 151 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASAN--------- 151 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT---------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCCC---------
Confidence 689999999975422 2445678899999999999999874 345679999999966654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchh--------HHHHHHH-HcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNAS--------MLMLLRL-LQG 214 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~--------~~~~~~~-~~g 214 (323)
...|+.+|.+.+.+++.++.+. |+++++++||.+.+|......... ......+ ...
T Consensus 152 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T 1x1t_A 152 ------------KSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEK 219 (260)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHH
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhcc
Confidence 1349999999999999888764 899999999999998643211000 0000000 000
Q ss_pred CCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 215 CTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 215 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.+ ...+.+++|+|++++.++.... ..|+ +++.++
T Consensus 220 ----~p--~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG 256 (260)
T 1x1t_A 220 ----QP--SLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp ----CT--TCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CC--CCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence 01 1237899999999999987532 3455 555443
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=192.77 Aligned_cols=221 Identities=18% Similarity=0.155 Sum_probs=157.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|+||||||+|+||++++++|+++|++|++++|+.+... ...+.+.. ..+++++.+|++|.+++.++++
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE--KAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHhhc-cCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999743222 22222222 1478999999999998887766
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCc-CEEEEecccccccCCCCCCCCcccc
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGV-KRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++ ++.+. ++||++||..++.+...
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 151 (251)
T 1zk4_A 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPS-------- 151 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTT--------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCCC--------
Confidence 4899999999754321 33456789999999888777665 44555 79999999966654321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHH-----hCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAK-----EKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~-----~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
...|+.+|.+.+.+++.++. ..+++++++|||.+++|...... .. ...... ... .+
T Consensus 152 -------------~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~--~~-~~~~~~-~~~--~~ 212 (251)
T 1zk4_A 152 -------------LGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP--GA-EEAMSQ-RTK--TP 212 (251)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST--TH-HHHHTS-TTT--CT
T ss_pred -------------CccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcC--ch-hhhHHH-hhc--CC
Confidence 13499999999999988775 35899999999999998543211 01 111101 110 11
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+++++|+|++++.++.... ..|+ +++.++
T Consensus 213 --~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 247 (251)
T 1zk4_A 213 --MGHIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp --TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCCCcCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence 1237899999999999997542 2354 566543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=195.02 Aligned_cols=226 Identities=19% Similarity=0.101 Sum_probs=159.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc--
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+.. ...++.++.+|++|.++++++++
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 81 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLR--AAESALRQRFPGARLFASVCDVLDALQVRAFAEAC 81 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999998753322 22222221 12358999999999998887765
Q ss_pred -----CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 -----GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 -----~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++. +.+.++||++||..+..+....
T Consensus 82 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~----- 156 (265)
T 3lf2_A 82 ERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHM----- 156 (265)
T ss_dssp HHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCTTB-----
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCCCc-----
Confidence 689999999975432 2445678899999999999999973 3445699999999766544321
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC------c-hhHHHHHHHHc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL------N-ASMLMLLRLLQ 213 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~------~-~~~~~~~~~~~ 213 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+.+|...... . ....+......
T Consensus 157 ----------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (265)
T 3lf2_A 157 ----------------VATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLAR 220 (265)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHH
T ss_pred ----------------hhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhh
Confidence 349999999999999988774 899999999999987421000 0 00111111111
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.... + ...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 221 ~~~~--p--~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdG 259 (265)
T 3lf2_A 221 NKQI--P--LGRLGKPIEAARAILFLASPLSAYTTGSHIDVSG 259 (265)
T ss_dssp HTTC--T--TCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESS
T ss_pred ccCC--C--cCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECC
Confidence 1101 1 1226789999999999997533 3455 44543
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=193.96 Aligned_cols=209 Identities=15% Similarity=0.121 Sum_probs=147.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+.. .+....+ ..++.++.+|++|.++++++++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~--~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 100 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDAL--QETAAEI---GDDALCVPTDVTDPDSVRALFTATVEKF 100 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHH---TSCCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHHh---CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4568899999999999999999999999999999874322 2222233 2478899999999999888776
Q ss_pred -CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhh----CC--cCEEEEecccccccCCCCCCCCccc
Q 020608 77 -GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG--VKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++.. .+ .++||++||.+++.+....
T Consensus 101 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~------ 174 (272)
T 4dyv_A 101 GRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYS------ 174 (272)
T ss_dssp SCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTTC------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCCc------
Confidence 789999999975331 24556788999999999999888633 32 3699999999766544321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.|.+|........ ..... ...
T Consensus 175 ---------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~----~~~~~------~~~ 229 (272)
T 4dyv_A 175 ---------------APYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAG----VPQAD------LSI 229 (272)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC----------------------------
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhccc----chhhh------hcc
Confidence 44999999999999998877 489999999999998854321100 00000 001
Q ss_pred cCCCcccHHHHHHHHHHhhcCCCCCc
Q 020608 222 FFMGSVHFKDVALAHILVYENPSACG 247 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~~~~ 247 (323)
....+++++|+|++++.++..+....
T Consensus 230 ~~~~~~~pedvA~~v~fL~s~~~~~~ 255 (272)
T 4dyv_A 230 KVEPVMDVAHVASAVVYMASLPLDAN 255 (272)
T ss_dssp ------CHHHHHHHHHHHHHSCTTSC
T ss_pred cccCCCCHHHHHHHHHHHhCCCCcCc
Confidence 11237799999999999999766543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=199.63 Aligned_cols=217 Identities=17% Similarity=0.135 Sum_probs=154.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+.+.. .+..+.+...+.++.++.+|++|.++++++++
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~--~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPAL--EQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 4568999999999999999999999999999999975332 22233333335578999999999999888765
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++.. .+ .++||++||..++.+....
T Consensus 107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 178 (301)
T 3tjr_A 107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGL-------- 178 (301)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTB--------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCc--------
Confidence 789999999976432 24556788999999999999999733 33 4699999999776554321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccC-
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YEN- 221 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~- 221 (323)
..|+.||.+.+.+++.++.+. |+++++++||.+.++...... ............+.. ++.
T Consensus 179 -------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 243 (301)
T 3tjr_A 179 -------------GTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSE--RIRGADYGMSATPEGAFGPL 243 (301)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHHH--HHC-----------------
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccccccc--cccchhhccccChhhhcccc
Confidence 349999999999999888764 899999999999887421100 000000000000100 111
Q ss_pred -cCCCcccHHHHHHHHHHhhcCCC
Q 020608 222 -FFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 222 -~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
....+++++|+|++++.+++.+.
T Consensus 244 ~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 244 PTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp -----CCCHHHHHHHHHHHHHHTC
T ss_pred ccccCCCCHHHHHHHHHHHHhcCC
Confidence 12348899999999999998653
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=193.46 Aligned_cols=225 Identities=18% Similarity=0.123 Sum_probs=162.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC----------cHHHHHHHhhccCCCCCeEEEEccCCCHhHHH
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS----------DERETAHLKALEGADTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 72 (323)
+++|++|||||+|+||++++++|+++|++|++++|++. .....+....+...+.++.++.+|++|.++++
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 105 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ 105 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 56789999999999999999999999999999998732 12222333333334568899999999999988
Q ss_pred HHhc-------CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhh----C-CcCEEEEecccccccCC
Q 020608 73 AAVT-------GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKA----L-GVKRVVVTSSISSITPS 135 (323)
Q Consensus 73 ~~~~-------~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~~~v~~SS~~~~~~~ 135 (323)
++++ ++|+||||||...... +.+.+...+++|+.++.++++++.. . +.++||++||.+++.+.
T Consensus 106 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~~ 185 (299)
T 3t7c_A 106 AAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGA 185 (299)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC
Confidence 8765 7899999999764322 4456788999999999999998743 2 25699999999776554
Q ss_pred CCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCc----------
Q 020608 136 PKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLN---------- 202 (323)
Q Consensus 136 ~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~---------- 202 (323)
... ..|+.||.+.+.+++.++.+. |+++++++||.|.+|.......
T Consensus 186 ~~~---------------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~ 244 (299)
T 3t7c_A 186 ENI---------------------GNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLEN 244 (299)
T ss_dssp TTC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSS
T ss_pred CCc---------------------chHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhcc
Confidence 321 349999999999999988775 8999999999999986532100
Q ss_pred hhHHHHHHH-HcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 203 ASMLMLLRL-LQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 203 ~~~~~~~~~-~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
......... .... ..+ ..+.+++|+|++++.++.... ..|+ +++.+
T Consensus 245 ~~~~~~~~~~~~~~--~~p---~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 294 (299)
T 3t7c_A 245 PTVEDFQVASRQMH--VLP---IPYVEPADISNAILFLVSDDARYITGVSLPVDG 294 (299)
T ss_dssp CCHHHHHHHHHHHS--SSS---CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred chhhHHHHHhhhhc--ccC---cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCC
Confidence 000000000 0000 011 236789999999999997543 3455 55544
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=189.25 Aligned_cols=194 Identities=14% Similarity=0.108 Sum_probs=140.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHH-HCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLL-ERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+|||+||||||||+||++++++|+ ++|++|+++.|++.. ..+.+. ....+++++.+|++|.+++.++++++|+|
T Consensus 3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~--~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 77 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKT--RIPPEI---IDHERVTVIEGSFQNPGXLEQAVTNAEVV 77 (221)
T ss_dssp CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHH--HSCHHH---HTSTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccc--cchhhc---cCCCceEEEECCCCCHHHHHHHHcCCCEE
Confidence 345679999999999999999999 899999999997420 111111 11357899999999999999999999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
||+|+.. |+. ++++++++++.++++||++||.+++...+. ...+. ......+.
T Consensus 78 v~~ag~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~-----~~~~~------~~~~~~~~ 130 (221)
T 3r6d_A 78 FVGAMES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPV-----ALEKW------TFDNLPIS 130 (221)
T ss_dssp EESCCCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCH-----HHHHH------HHHTSCHH
T ss_pred EEcCCCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCc-----ccccc------cccccccH
Confidence 9999852 444 899999999999999999999965543221 11000 00011125
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhh-
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVY- 240 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~- 240 (323)
|+.+|..+|.+++ +.+++++++|||.++++........ .... . .....+++.+|+|++++.++
T Consensus 131 y~~~K~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~~~~~--------~~~~-~---~~~~~~~~~~dvA~~~~~l~~ 194 (221)
T 3r6d_A 131 YVQGERQARNVLR----ESNLNYTILRLTWLYNDPEXTDYEL--------IPEG-A---QFNDAQVSREAVVKAIFDILH 194 (221)
T ss_dssp HHHHHHHHHHHHH----HSCSEEEEEEECEEECCTTCCCCEE--------ECTT-S---CCCCCEEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----hCCCCEEEEechhhcCCCCCcceee--------ccCC-c---cCCCceeeHHHHHHHHHHHHH
Confidence 9999999998874 5799999999999999832211100 0000 0 01123799999999999999
Q ss_pred -cCCC
Q 020608 241 -ENPS 244 (323)
Q Consensus 241 -~~~~ 244 (323)
.++.
T Consensus 195 ~~~~~ 199 (221)
T 3r6d_A 195 AADET 199 (221)
T ss_dssp CSCCG
T ss_pred hcChh
Confidence 7654
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=187.16 Aligned_cols=215 Identities=17% Similarity=0.122 Sum_probs=157.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.++.. +..+.+ ++.++.+|++|.++++++++
T Consensus 1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~ 73 (245)
T 1uls_A 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLR--EAAEAV-----GAHPVVMDVADPASVERGFAEALA 73 (245)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHTT-----TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHc-----CCEEEEecCCCHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999998642211 112222 37889999999998887765
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||..... ...+.+...+++|+.++.++++++.. .+.++||++||.+ .++....
T Consensus 74 ~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~~~~------- 145 (245)
T 1uls_A 74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNLGQ------- 145 (245)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCTTC-------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCCCCc-------
Confidence 589999999975322 13456778999999999999988743 3567999999985 5543211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|...+.+.+.++.+ .|+++++++||.+.++...... ...........+ .
T Consensus 146 --------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~~p----~- 203 (245)
T 1uls_A 146 --------------ANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVP---EKVREKAIAATP----L- 203 (245)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSC---HHHHHHHHHTCT----T-
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcC---HHHHHHHHhhCC----C-
Confidence 34999999999998888766 4899999999999998643211 112222222211 1
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
..+++++|+|++++.++.... ..|+ +.+.+
T Consensus 204 -~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdg 236 (245)
T 1uls_A 204 -GRAGKPLEVAYAALFLLSDESSFITGQVLFVDG 236 (245)
T ss_dssp -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCCcCHHHHHHHHHHHhCchhcCCcCCEEEECC
Confidence 126799999999999987532 3455 44544
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=194.85 Aligned_cols=223 Identities=20% Similarity=0.151 Sum_probs=158.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHH-CCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLE-RRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|+||||||+|+||++++++|++ .|++|++++|+.+... ...+.+...+.++.++.+|++|.++++++++
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ--AAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHH--HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHH--HHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999 9999999999743222 2222332224578899999999999888776
Q ss_pred --CCCEEEEcccCCccCCC----CCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCC-------C
Q 020608 77 --GCTGVFHLASPCIVDKV----EDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPA-------D 141 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~-------~ 141 (323)
++|+|||+||....... .+.+...+++|+.++.++++++.... .++||++||..++++.....+ .
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~ 159 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS 159 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccc
Confidence 78999999997643221 24567889999999999999997652 249999999877643110000 0
Q ss_pred ccccCCCCCC-------------hhhhccCCCchHHHHHHHHHHHHHHHHh-------CCccEEEEcCCCccCCCCCCCC
Q 020608 142 KVKDEDCWTD-------------EEYCRQNEIWYPLSKTLAEKAAWEFAKE-------KGLDVVVVNPGTVMGPVIPPTL 201 (323)
Q Consensus 142 ~~~~e~~~~~-------------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-------~~~~~~~~Rp~~v~G~~~~~~~ 201 (323)
..++|+++.. ......+.+.|+.+|.+.+.+++.++.+ .++++++++||.|.++....
T Consensus 160 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~-- 237 (276)
T 1wma_A 160 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP-- 237 (276)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT--
T ss_pred cccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc--
Confidence 0111211000 0000012256999999999999888766 58999999999999876431
Q ss_pred chhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC----CCccEEE
Q 020608 202 NASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS----ACGRHLC 251 (323)
Q Consensus 202 ~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~----~~~~~~~ 251 (323)
..+.+++|+|++++.++..+. ..|+|..
T Consensus 238 ----------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~ 269 (276)
T 1wma_A 238 ----------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFVS 269 (276)
T ss_dssp ----------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEE
T ss_pred ----------------------cccCChhHhhhhHhhhhcCcccccccCceEec
Confidence 125789999999999997542 3555543
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=194.79 Aligned_cols=223 Identities=15% Similarity=0.131 Sum_probs=159.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCC---CeEEEEccCCCHhHHHHHhc--
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADT---RLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
.+++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+...+. ++.++.+|++|.++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLE--ETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 80 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHH
Confidence 367899999999999999999999999999999999753222 22223322223 68899999999998887765
Q ss_pred -----CCCEEEEcccCCccC--------CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCC-CCC
Q 020608 77 -----GCTGVFHLASPCIVD--------KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPS-PKW 138 (323)
Q Consensus 77 -----~~d~Vih~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~-~~~ 138 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++.. .+ ++||++||..++.+. ..
T Consensus 81 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~- 158 (280)
T 1xkq_A 81 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQPD- 158 (280)
T ss_dssp HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCCCS-
T ss_pred HHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCCCCc-
Confidence 689999999975321 13345788999999999999999753 34 799999998665433 11
Q ss_pred CCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCC-chh-----HHHHH
Q 020608 139 PADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTL-NAS-----MLMLL 209 (323)
Q Consensus 139 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~-~~~-----~~~~~ 209 (323)
...|+.+|.+.+.+++.++.+ +|+++++++||.+++|...... ... .....
T Consensus 159 --------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~ 218 (280)
T 1xkq_A 159 --------------------FLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMA 218 (280)
T ss_dssp --------------------SHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHH
T ss_pred --------------------ccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHH
Confidence 134999999999999988765 5899999999999998532110 000 01111
Q ss_pred HHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC---CCCcc-EEEEcC
Q 020608 210 RLLQGCTDTYENFFMGSVHFKDVALAHILVYENP---SACGR-HLCVEA 254 (323)
Q Consensus 210 ~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~~~-~~~~~~ 254 (323)
..... .+ ...+.+++|+|++++.++... ...|+ +++.++
T Consensus 219 ~~~~~----~p--~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG 261 (280)
T 1xkq_A 219 SHKEC----IP--IGAAGKPEHIANIILFLADRNLSFYILGQSIVADGG 261 (280)
T ss_dssp HCTTT----CT--TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred HHHcC----CC--CCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCC
Confidence 11111 11 123789999999999998754 23455 555443
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=188.97 Aligned_cols=216 Identities=16% Similarity=0.094 Sum_probs=155.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+. ..+..+.+ +.++.++.+|++|.++++++++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE--GAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHh---CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999986422 11222222 2368889999999999888776
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||.+++.+...
T Consensus 77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 147 (254)
T 1hdc_A 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLAL--------- 147 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT---------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCC---------
Confidence 799999999975431 234567889999999998666554 4555689999999966654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC-CCCccC-
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC-TDTYEN- 221 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~~~- 221 (323)
...|+.+|.+.+.+.+.++.+ .|++++++|||.+++|... ...... ......
T Consensus 148 ------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----------~~~~~~~~~~~~~~ 204 (254)
T 1hdc_A 148 ------------TSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTA-----------ETGIRQGEGNYPNT 204 (254)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH-----------HHTCCCSTTSCTTS
T ss_pred ------------chhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCcccc-----------ccchhHHHHHHhcC
Confidence 134999999999999988876 4899999999999987421 000000 000010
Q ss_pred cCCCcc-cHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 222 FFMGSV-HFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 222 ~~~~~i-~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
....+. +++|+|++++.++.... ..|+ +++.+.
T Consensus 205 p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 241 (254)
T 1hdc_A 205 PMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGG 241 (254)
T ss_dssp TTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECCC
Confidence 112267 99999999999987542 3455 455443
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=188.81 Aligned_cols=210 Identities=20% Similarity=0.215 Sum_probs=154.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +..+++...+.++.++.+|++|.++++++++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLR--ALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999743222 2222332224578899999999998887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||...... +.+.+...+++|+.++.++++++.. .+ ++||++||.++..+.+.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~---------- 151 (247)
T 2jah_A 83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVRN---------- 151 (247)
T ss_dssp SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCCTT----------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCCCC----------
Confidence 7899999999753321 3345778899999999999998743 34 79999999866554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
...|+.+|.+.+.+.+.++.+ +|+++++++||.+.++......... ........ + +++
T Consensus 152 -----------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~---~~~~~~~~----~-~~~ 212 (247)
T 2jah_A 152 -----------AAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTA---TKEMYEQR----I-SQI 212 (247)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHH---HHHHHHHH----T-TTS
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchh---hHHHHHhc----c-ccc
Confidence 134999999999998888766 4899999999999998533211111 11111111 1 112
Q ss_pred CcccHHHHHHHHHHhhcCCC
Q 020608 225 GSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~ 244 (323)
.+++++|+|++++.++..+.
T Consensus 213 ~~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 213 RKLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp CCBCHHHHHHHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHhCCCc
Confidence 25799999999999998653
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=191.05 Aligned_cols=219 Identities=18% Similarity=0.166 Sum_probs=160.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|++|||||+|+||++++++|+++|++|++++|+.+.. .+....+ +.++.++.+|++|.++++++++
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~--~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGA--KAAAASI---GKKARAIAADISDPGSVKALFAEIQAL 77 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHH--HHHHHHH---CTTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999998864322 2222233 3478899999999999888776
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCC-cCEEEEecccccccCCCCCCCCcccc
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALG-VKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+||||||...... +.+.+...+++|+.++.++++++ ++.+ .+++|++||..++.+.+..
T Consensus 78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------- 150 (247)
T 3rwb_A 78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNM------- 150 (247)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTTC-------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCCCc-------
Confidence 7899999999764322 44567889999999999999984 4444 5799999999776654321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+.+.++.+ +|+++++++||.+.++................. . .
T Consensus 151 --------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~--~------~ 208 (247)
T 3rwb_A 151 --------------AAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML--Q------A 208 (247)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH--S------S
T ss_pred --------------hhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc--c------c
Confidence 34999999999999998877 589999999999998743221111111111100 1 0
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+.+++|+|+++..++.... ..|+ +++.++
T Consensus 209 ~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG 243 (247)
T 3rwb_A 209 MKGKGQPEHIADVVSFLASDDARWITGQTLNVDAG 243 (247)
T ss_dssp SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 1225689999999999997543 2455 455443
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-26 Score=192.41 Aligned_cols=203 Identities=22% Similarity=0.163 Sum_probs=149.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+.+... +..+.+...+.++.++.+|++|.+++.++++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLR--AVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999753322 2223333334578999999999999887765
Q ss_pred -CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||.... ..+.+.+...+++|+.++.++++++. +.+.++||++||.+++.+....
T Consensus 105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 176 (262)
T 3rkr_A 105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADG-------- 176 (262)
T ss_dssp SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCTTC--------
T ss_pred CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCC--------
Confidence 58999999997321 12445678899999999999999863 3456799999999665543321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... .. ...
T Consensus 177 -------------~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-----------~~------~~~ 226 (262)
T 3rkr_A 177 -------------AAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLS-----------AK------KSA 226 (262)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------
T ss_pred -------------chHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccc-----------cc------ccc
Confidence 44999999999999988876 4899999999999887532110 00 011
Q ss_pred CCcccHHHHHHHHHHhhcCCCC
Q 020608 224 MGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
..+++++|+|++++.++.....
T Consensus 227 ~~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 227 LGAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp --CCCHHHHHHHHHHHHTCCTT
T ss_pred ccCCCHHHHHHHHHHHhcCccc
Confidence 2367899999999999986543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=195.68 Aligned_cols=226 Identities=17% Similarity=0.086 Sum_probs=160.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.... .....+.+...+.++.++.+|++|.++++++++
T Consensus 25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTES-AEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999875321 112222222224578899999999998877654
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++... +.++||++||..+..+...
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 173 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVP---------- 173 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCS----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCCC----------
Confidence 689999999975432 134567889999999999999998765 4579999999865543221
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCC-------C-chhHHHHHHHHc--C
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPT-------L-NASMLMLLRLLQ--G 214 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~-------~-~~~~~~~~~~~~--g 214 (323)
....|+.+|.+.+.+++.++.+ +|+++++++||.+.++..... . .........+.. .
T Consensus 174 ----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 1g0o_A 174 ----------KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQW 243 (283)
T ss_dssp ----------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHS
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcC
Confidence 0145999999999999988866 489999999999998742100 0 000111122221 1
Q ss_pred CCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 215 CTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 215 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.+ ...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 244 ~p------~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdg 279 (283)
T 1g0o_A 244 SP------LRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDG 279 (283)
T ss_dssp CT------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CC------CCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCC
Confidence 11 1236799999999999997543 3455 44543
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-26 Score=192.29 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=152.0
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+..... +...++ ..++.++.+|++|.++++++++
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAE--RVAGEI---GDAALAVAADISKEADVDAAVEAALS 79 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH--HHHHHh---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999753222 222222 3478999999999999888776
Q ss_pred ---CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhhC----C----cCEEEEecccccccCCCCCCC
Q 020608 77 ---GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKAL----G----VKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~----~~~~v~~SS~~~~~~~~~~~~ 140 (323)
++|+||||||...... ..+.+...+++|+.++.++++++... + ..++|++||..++.+.+..
T Consensus 80 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~-- 157 (261)
T 3n74_A 80 KFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNL-- 157 (261)
T ss_dssp HHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTTC--
T ss_pred hcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCCc--
Confidence 7899999999754221 34567789999999999999887332 1 3479999998665543321
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhH-HHHHHHHcCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASM-LMLLRLLQGCT 216 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~-~~~~~~~~g~~ 216 (323)
..|+.+|.+.+.+++.++.+ .++++++++||.+.+|.......... .....+...
T Consensus 158 -------------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~-- 216 (261)
T 3n74_A 158 -------------------AWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDS-- 216 (261)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------------
T ss_pred -------------------cHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHHhhc--
Confidence 34999999999999998877 48999999999999986442211000 011111111
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.....+++++|+|++++.++.... ..|+ +++.+
T Consensus 217 ----~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdg 252 (261)
T 3n74_A 217 ----IPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDG 252 (261)
T ss_dssp ----CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ----CCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecC
Confidence 112237899999999999986433 3455 55643
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=188.35 Aligned_cols=197 Identities=22% Similarity=0.156 Sum_probs=140.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|+.++|+||||||+|+||++++++|+++|++|++++|+.+... .....+ .++.++.+|++|.++++++++
T Consensus 1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (234)
T 2ehd_A 1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQ--ALAAEL----EGALPLPGDVREEGDWARAVAAMEE 74 (234)
T ss_dssp ---CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHS----TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHh----hhceEEEecCCCHHHHHHHHHHHHH
Confidence 7777789999999999999999999999999999998642211 122222 267889999999998887765
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||..... ...+.+...+++|+.++.++++.+ ++.+.++||++||.+++.+...
T Consensus 75 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 146 (234)
T 2ehd_A 75 AFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKG-------- 146 (234)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCCTT--------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCCCC--------
Confidence 789999999975322 134567789999999998666654 4556789999999865543221
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
...|+.+|.+.+.+++.++.+ .|++++++|||.+.++..... . ..
T Consensus 147 -------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--------~----~~------- 194 (234)
T 2ehd_A 147 -------------GAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGNT--------P----GQ------- 194 (234)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC--------------------------------
T ss_pred -------------CchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccccc--------c----cc-------
Confidence 134999999999998888765 489999999999988743210 0 00
Q ss_pred CCCcccHHHHHHHHHHhhcCCC
Q 020608 223 FMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
+.+++++|+|++++.++..+.
T Consensus 195 -~~~~~~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 195 -AWKLKPEDVAQAVLFALEMPG 215 (234)
T ss_dssp ----CCHHHHHHHHHHHHHSCC
T ss_pred -cCCCCHHHHHHHHHHHhCCCc
Confidence 014689999999999997654
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=195.00 Aligned_cols=212 Identities=15% Similarity=0.087 Sum_probs=156.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+... ..++.++.+|++|.++++++++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 72 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-------------EAKYDHIECDVTNPDQVKASIDHIFKEY 72 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-------------SCSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-------------CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999997643 2367889999999999888776
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||...... +.+.+...+++|+.++.++++++.. .+.++||++||.+++.+...
T Consensus 73 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 142 (264)
T 2dtx_A 73 GSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKN---------- 142 (264)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCCC----------
Confidence 6899999999754322 3456788999999999999988743 45679999999966554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhCC--ccEEEEcCCCccCCCCCCCCc----hhH----HHHHHHHcCCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG--LDVVVVNPGTVMGPVIPPTLN----ASM----LMLLRLLQGCTD 217 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~Rp~~v~G~~~~~~~~----~~~----~~~~~~~~g~~~ 217 (323)
...|+.+|.+.+.+++.++.+.+ +++++++||.+.++....... ... ..........
T Consensus 143 -----------~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 209 (264)
T 2dtx_A 143 -----------ASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEH-- 209 (264)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHS--
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcC--
Confidence 13499999999999999987754 999999999998864211000 000 1111111111
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+ ...+++++|+|++++.++.... ..|+ +++.+.
T Consensus 210 --p--~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 245 (264)
T 2dtx_A 210 --P--MQRIGKPQEVASAVAFLASREASFITGTCLYVDGG 245 (264)
T ss_dssp --T--TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --C--CCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 1 1237899999999999987542 3455 555443
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=191.64 Aligned_cols=223 Identities=17% Similarity=0.112 Sum_probs=159.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|+++.|+... ...+..+.+...+.++.++.+|++|.++++++++
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTK-DAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHH-HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 567999999999999999999999999999998775422 2222233333335678999999999999888765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccc-cCCCCCCCCccccCCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSI-TPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~-~~~~~~~~~~~~~e~~ 148 (323)
++|+||||||...... +.+.+...+++|+.++.++++++...- .+++|++||..+. .+.+.
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~----------- 163 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPK----------- 163 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTCCCTT-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccCCCCC-----------
Confidence 6899999999864322 456778899999999999999986542 3499999998422 22111
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCC---------CchhHHHHHHHHcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPT---------LNASMLMLLRLLQGCT 216 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~---------~~~~~~~~~~~~~g~~ 216 (323)
...|+.||.+.+.+.+.++.+ .|+++++++||.+.+|..... ...............+
T Consensus 164 ----------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 233 (270)
T 3is3_A 164 ----------HSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASP 233 (270)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHST
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCC
Confidence 144999999999999998877 489999999999999853210 0001111111111111
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 234 ------~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 267 (270)
T 3is3_A 234 ------LHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDG 267 (270)
T ss_dssp ------TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ------CCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCC
Confidence 1226789999999999987543 3455 45543
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=193.62 Aligned_cols=213 Identities=18% Similarity=0.128 Sum_probs=157.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
.++|+||||||+|+||++++++|+++|++|++++|+.... .....++.+|++|.++++++++
T Consensus 12 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD------------VNVSDHFKIDVTNEEEVKEAVEKTTKKY 79 (269)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C------------TTSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc------------cCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999875322 1256788999999999888765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++.. .+.++||++||.+++.+....
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 150 (269)
T 3vtz_A 80 GRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNA--------- 150 (269)
T ss_dssp SCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTC---------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCC---------
Confidence 7899999999754322 3455678899999999999998643 455799999999776554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCC--------CchhHHHHHHHHcCCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPT--------LNASMLMLLRLLQGCTD 217 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~--------~~~~~~~~~~~~~g~~~ 217 (323)
..|+.||.+.+.+++.++.++ ++++++++||.|.++..... ...............
T Consensus 151 ------------~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (269)
T 3vtz_A 151 ------------AAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQH-- 216 (269)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHS--
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcC--
Confidence 349999999999999998876 89999999999998742100 000011112221111
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
....+.+++|+|++++.++.... ..|+ +++.++
T Consensus 217 ----p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 252 (269)
T 3vtz_A 217 ----PMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGG 252 (269)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCC
Confidence 11236789999999999997543 2455 566544
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=193.38 Aligned_cols=222 Identities=20% Similarity=0.191 Sum_probs=158.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|++|||||+|+||++++++|+++|++|++++|+.......+..+.+...+.++.++.+|++|.++++++++ +
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG 81 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999999999998754311222333333334578999999999998888776 7
Q ss_pred CCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCc-CEEEEecccccccCCCCCCCCccccCCC
Q 020608 78 CTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGV-KRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 78 ~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
+|+|||+||..... .+.+.+...+++|+.++.++++++.. .+. ++||++||.+++.+.+.
T Consensus 82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 150 (258)
T 3a28_C 82 FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPI----------- 150 (258)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCTT-----------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCCC-----------
Confidence 89999999975432 23456788999999999999999754 355 79999999966654321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch------h--HHHHHHHHcCCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA------S--MLMLLRLLQGCTD 217 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~------~--~~~~~~~~~g~~~ 217 (323)
...|+.+|.+.+.+.+.++.+. |+++++++||.+.++........ . ......+....
T Consensus 151 ----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 218 (258)
T 3a28_C 151 ----------LSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSI-- 218 (258)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTC--
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcC--
Confidence 1349999999999999888764 89999999999988742110000 0 00111111111
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
+ ...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 219 --p--~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 253 (258)
T 3a28_C 219 --A--LGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDG 253 (258)
T ss_dssp --T--TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred --C--CCCccCHHHHHHHHHHHhCcccCCCCCCEEEECC
Confidence 1 1237899999999999997542 3455 44543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-26 Score=191.46 Aligned_cols=223 Identities=20% Similarity=0.144 Sum_probs=155.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|++|||||+|+||++++++|+++|++|++..++... ...+..+.+...+.++.++.+|++|.++++++++
T Consensus 23 m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 23 MMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAA-AAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp ----CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSH-HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 33467899999999999999999999999999988655432 2222233333334578999999999999888765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||...... ..+.+...+++|+.++.++++++... ..+++|++||..+..+.+..
T Consensus 102 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 172 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHPSY--------- 172 (267)
T ss_dssp HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCTTC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCCCc---------
Confidence 7899999999764322 34457788999999999999997543 13599999998666544321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.||.+.+.+++.++.+. |+++++++||.+.+|...... .......+....+ ..
T Consensus 173 ------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~p------~~ 232 (267)
T 3u5t_A 173 ------------GIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGK--SDEVRDRFAKLAP------LE 232 (267)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-------------CHHHHHTSST------TC
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccC--CHHHHHHHHhcCC------CC
Confidence 349999999999999999885 899999999999988643211 0111122222211 12
Q ss_pred CcccHHHHHHHHHHhhcCCCC--Ccc-EEEEc
Q 020608 225 GSVHFKDVALAHILVYENPSA--CGR-HLCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~ 253 (323)
.+.+++|+|++++.++..... .|+ +++.+
T Consensus 233 r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 264 (267)
T 3u5t_A 233 RLGTPQDIAGAVAFLAGPDGAWVNGQVLRANG 264 (267)
T ss_dssp SCBCHHHHHHHHHHHHSTTTTTCCSEEEEESS
T ss_pred CCcCHHHHHHHHHHHhCccccCccCCEEEeCC
Confidence 367899999999999975432 455 44544
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=193.72 Aligned_cols=229 Identities=17% Similarity=0.130 Sum_probs=162.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC----------cHHH-HHHHhhccCCCCCeEEEEccCCCHhHH
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS----------DERE-TAHLKALEGADTRLRLFQIDLLDYDAI 71 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 71 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.. +... .+..+.+...+.++.++.+|++|.+++
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 88 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL 88 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 56799999999999999999999999999999988421 2222 222333333356789999999999998
Q ss_pred HHHhc-------CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCC
Q 020608 72 AAAVT-------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPS 135 (323)
Q Consensus 72 ~~~~~-------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~ 135 (323)
+++++ ++|+||||||..... .+.+.+...+++|+.++.++++++.. .+ .++||++||..++.+.
T Consensus 89 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 168 (277)
T 3tsc_A 89 RKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQ 168 (277)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCCC
Confidence 87765 589999999976442 24567788999999999999998632 22 4699999999766544
Q ss_pred CCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHH
Q 020608 136 PKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLL 212 (323)
Q Consensus 136 ~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~ 212 (323)
+.. ..|+.||.+.+.+++.++.+. |+++++++||.+.+|..... ..........
T Consensus 169 ~~~---------------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--~~~~~~~~~~ 225 (277)
T 3tsc_A 169 PFM---------------------IHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGD--MVTAVGQAME 225 (277)
T ss_dssp SSC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHH--HHHHHHHHHH
T ss_pred CCc---------------------hhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccch--hhhhhhhccc
Confidence 321 349999999999999988774 89999999999999864311 0001111111
Q ss_pred cCCC---CCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 213 QGCT---DTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 213 ~g~~---~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.... .........+.+++|+|++++.++.... ..|+ +++.++
T Consensus 226 ~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 273 (277)
T 3tsc_A 226 TNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQG 273 (277)
T ss_dssp TCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCC
Confidence 1110 0011111237899999999999997543 3455 555544
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=190.85 Aligned_cols=222 Identities=11% Similarity=0.007 Sum_probs=162.6
Q ss_pred CCCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 2 SKEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
.+++|++|||||+| +||++++++|+++|++|++++|+............. ...+.++.+|++|.++++++++
T Consensus 27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~ 103 (296)
T 3k31_A 27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAES---LGVKLTVPCDVSDAESVDNMFKVLA 103 (296)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH---HTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 45678999999997 999999999999999999999985433322222111 1246889999999999888775
Q ss_pred ----CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCCCc
Q 020608 77 ----GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+||||||.... ..+.+.+...+++|+.++.++++++...- .++||++||.+++.+....
T Consensus 104 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~~~---- 179 (296)
T 3k31_A 104 EEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVPHY---- 179 (296)
T ss_dssp HHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTTT----
T ss_pred HHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCCCc----
Confidence 68999999997542 23456788999999999999999986542 3599999999766544321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.||.+.+.+++.++.++ |+++++++||.|.++..... ..............+.
T Consensus 180 -----------------~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~p~-- 239 (296)
T 3k31_A 180 -----------------NVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI-SDFHYILTWNKYNSPL-- 239 (296)
T ss_dssp -----------------THHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC-HHHHHHHHHHHHHSTT--
T ss_pred -----------------hhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc-cchHHHHHHHHhcCCC--
Confidence 449999999999999988774 89999999999999865432 1111222222222211
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+..++|+|++++.++.... ..|+ +++.++
T Consensus 240 ----~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 273 (296)
T 3k31_A 240 ----RRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCG 273 (296)
T ss_dssp ----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCHHHHHHHHHHHcCCccCCccCCEEEECCC
Confidence 225689999999999997532 3455 556443
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-26 Score=192.55 Aligned_cols=222 Identities=16% Similarity=0.119 Sum_probs=160.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhc----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+.. .+.++.++.+|++|.++++++++
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELD--AARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 457799999999999999999999999999999999753322 22222221 24578999999999998887765
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++.. .+ .++||++||..++.+....
T Consensus 95 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------ 168 (266)
T 4egf_A 95 AFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDH------ 168 (266)
T ss_dssp HHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTC------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCCCC------
Confidence 789999999976432 23456788999999999999998743 22 3699999999766544321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.|.+|....... .......+....+
T Consensus 169 ---------------~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~p----- 227 (266)
T 4egf_A 169 ---------------YAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG-DEAKSAPMIARIP----- 227 (266)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC-SHHHHHHHHTTCT-----
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc-ChHHHHHHHhcCC-----
Confidence 34999999999999998877 48999999999999874221000 0111222222221
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 228 -~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdG 261 (266)
T 4egf_A 228 -LGRFAVPHEVSDAVVWLASDAASMINGVDIPVDG 261 (266)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCCCcCHHHHHHHHHHHhCchhcCccCcEEEECC
Confidence 1236789999999999997533 3455 55544
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=191.80 Aligned_cols=221 Identities=15% Similarity=0.142 Sum_probs=160.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|+++.|+.. .........+...+.++.++.+|++|.++++++++
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERN-DHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF 101 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCH-HHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCch-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35688999999999999999999999999999886532 22223333333445679999999999998887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++.. .+.++||++||..++.+....
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 172 (269)
T 3gk3_A 102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQ--------- 172 (269)
T ss_dssp SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTB---------
T ss_pred CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCCCc---------
Confidence 7899999999764322 3456788999999999999998743 445799999999776654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.++ |+++++++||.+.++....... ...... ........
T Consensus 173 ------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-------~~~~~~-~~~~~~~~ 232 (269)
T 3gk3_A 173 ------------ANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQ-------DVLEAK-ILPQIPVG 232 (269)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC--------------CC-SGGGCTTS
T ss_pred ------------chHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhch-------hHHHHH-hhhcCCcC
Confidence 349999999999998888764 8999999999999986542110 000100 00011122
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.+.+++|+|++++.++.... ..|+ +++.+
T Consensus 233 ~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdg 264 (269)
T 3gk3_A 233 RLGRPDEVAALIAFLCSDDAGFVTGADLAING 264 (269)
T ss_dssp SCBCHHHHHHHHHHHTSTTCTTCCSCEEEEST
T ss_pred CccCHHHHHHHHHHHhCCCcCCeeCcEEEECC
Confidence 36789999999999997643 3455 66654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=189.03 Aligned_cols=220 Identities=18% Similarity=0.097 Sum_probs=156.6
Q ss_pred CCCceEEEecccc-HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSG-CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|++|||||+| .||++++++|+++|++|++++|+.+... +..+.+... ..++.++.+|++|.++++++++
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLG--ETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHH--HHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 5678999999998 6999999999999999999999753322 223333222 3579999999999999887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC-----CcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL-----GVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++... +.++||++||..++.+...
T Consensus 98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------- 170 (266)
T 3o38_A 98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHS------- 170 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCTT-------
T ss_pred HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCCC-------
Confidence 6799999999754322 44567889999999999999997543 4568999999866654432
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+++.++.+ .|+++++++||.+.++....... ......+... .
T Consensus 171 --------------~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~------~ 228 (266)
T 3o38_A 171 --------------QSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSS--SELLDRLASD------E 228 (266)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-------------------C------C
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCc--HHHHHHHHhc------C
Confidence 144999999999999998877 58999999999999886432111 1111111111 1
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
....+.+++|+|++++.++.... ..|+ +++.+
T Consensus 229 ~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdg 263 (266)
T 3o38_A 229 AFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSS 263 (266)
T ss_dssp TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcC
Confidence 12337799999999999987533 3455 45544
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=185.60 Aligned_cols=212 Identities=15% Similarity=0.058 Sum_probs=157.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|+||||||++.||+++++.|+++|++|++.+|+.. . +.++.....++.++.+|++|+++++++++ +
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~---~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 75 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK---R---SADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQR 75 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH---H---HHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH---H---HHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 489999999999999999999999999999998632 1 11222224578899999999998887765 7
Q ss_pred CCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 78 CTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 78 ~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+|++|||||..... .+.+.|+..+++|+.++..+.+++. +.+ +++|++||..+..+.+..
T Consensus 76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~IInisS~~~~~~~~~~----------- 143 (247)
T 3ged_A 76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQSEPDS----------- 143 (247)
T ss_dssp CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGTSCCTTC-----------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CcEEEEeecccccCCCCC-----------
Confidence 89999999975432 2456789999999999999988873 334 699999999776654421
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSV 227 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 227 (323)
..|+.||.....+.+.++.+. +++++.|.||.+-.|...... ....... |.+ .+.
T Consensus 144 ----------~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~~-------~~~~~~~----Pl~--R~g 200 (247)
T 3ged_A 144 ----------EAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQEFT-------QEDCAAI----PAG--KVG 200 (247)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---CC-------HHHHHTS----TTS--SCB
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHHHH-------HHHHhcC----CCC--CCc
Confidence 349999999999998888775 899999999999887643221 1111211 111 155
Q ss_pred cHHHHHHHHHHhhcCCCCCccEEEEcCccC
Q 020608 228 HFKDVALAHILVYENPSACGRHLCVEAISH 257 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~~ 257 (323)
.++|+|.+++.++......|+.+..+..+|
T Consensus 201 ~pediA~~v~fL~s~~~iTG~~i~VDGG~s 230 (247)
T 3ged_A 201 TPKDISNMVLFLCQQDFITGETIIVDGGMS 230 (247)
T ss_dssp CHHHHHHHHHHHHHCSSCCSCEEEESTTGG
T ss_pred CHHHHHHHHHHHHhCCCCCCCeEEECcCHH
Confidence 799999999999986555666554444444
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=197.56 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=157.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-----CCCCeEEEEccCCCHhHHHHHhc-
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-----ADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+.+... ...+.+.. .+.++.++.+|++|.++++++++
T Consensus 16 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLK--SAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999753222 22222211 24578999999999999888776
Q ss_pred ------CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCc
Q 020608 77 ------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+||||||..... ...+.+...+++|+.++.++++++.. .+.+++|++||.+ ..+.+.
T Consensus 94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~~~----- 167 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFPL----- 167 (303)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCTT-----
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCCCc-----
Confidence 589999999964321 13345678899999999999999754 2346999999985 333221
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch-hHHHHHHHHcCCCCC
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA-SMLMLLRLLQGCTDT 218 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~-~~~~~~~~~~g~~~~ 218 (323)
...|+.+|...+.+.+.++.+. |++++++|||.++||........ ...........
T Consensus 168 ----------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---- 227 (303)
T 1yxm_A 168 ----------------AVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK---- 227 (303)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGG----
T ss_pred ----------------chhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhc----
Confidence 1349999999999999988775 89999999999999942111110 00001111111
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.+ ...+++++|+|++++.++.... ..|+ +++.++
T Consensus 228 ~p--~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG 264 (303)
T 1yxm_A 228 IP--AKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG 264 (303)
T ss_dssp ST--TSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred Cc--ccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCC
Confidence 11 1237899999999999987533 3455 556544
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=192.04 Aligned_cols=220 Identities=20% Similarity=0.164 Sum_probs=156.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|++|||||+|+||++++++|+++|++|++++|+..... +..+.+...+.++.++.+|++|.++++++++ +
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAK--AVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999999999999753222 2222232223468899999999999888776 7
Q ss_pred CCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCCCCCCCccccCCC
Q 020608 78 CTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 78 ~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
+|+|||+||..... ...+.+...+++|+.++.++++++.. .+ .+++|++||..++++.+..
T Consensus 80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~---------- 149 (256)
T 1geg_A 80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPEL---------- 149 (256)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTB----------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCc----------
Confidence 89999999975322 13456778999999999998888743 34 5799999998666543211
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc---h-----hHHHHHHHHcCCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN---A-----SMLMLLRLLQGCTD 217 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~---~-----~~~~~~~~~~g~~~ 217 (323)
..|+.+|.+.+.+++.++.+ +|+++++++||.+.+|....... . .......+....
T Consensus 150 -----------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (256)
T 1geg_A 150 -----------AVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI-- 216 (256)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTC--
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcC--
Confidence 34999999999999988876 48999999999999874211000 0 000011111111
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
+ ...+.+++|+|++++.++.... ..|+ +.+.+
T Consensus 217 --p--~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 251 (256)
T 1geg_A 217 --T--LGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDG 251 (256)
T ss_dssp --T--TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred --C--CCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence 1 1237899999999999987542 3455 44543
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=193.21 Aligned_cols=219 Identities=18% Similarity=0.132 Sum_probs=156.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh---cCC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV---TGC 78 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~~~ 78 (323)
++++|++|||||+|+||++++++|+++|++|++++|+..+ ++.+.. ..++.++.+|++|.+++++++ .++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~i 75 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK------LQELEK-YPGIQTRVLDVTKKKQIDQFANEVERL 75 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH------HGGGGG-STTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH------HHHHHh-ccCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999999986421 111111 126889999999999888764 478
Q ss_pred CEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 79 TGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 79 d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
|+|||+||..... ...+.+...+++|+.++.++++++. +.+.+++|++||.+++.+...
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------- 142 (246)
T 2ag5_A 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVV------------- 142 (246)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCT-------------
T ss_pred CEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCCC-------------
Confidence 9999999975432 1345677889999999999999974 345679999999865543220
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCCccCcCC
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
....|+.+|.+.+.+++.++.+. |++++++|||.+++|...... .........+....+ . .
T Consensus 143 -------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~----~--~ 209 (246)
T 2ag5_A 143 -------NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK----T--G 209 (246)
T ss_dssp -------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT----T--S
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCC----C--C
Confidence 01349999999999999988764 899999999999998522100 000111222222211 1 2
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.+++++|+|++++.++.... ..|+ +++.+
T Consensus 210 ~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdg 241 (246)
T 2ag5_A 210 RFATAEEIAMLCVYLASDESAYVTGNPVIIDG 241 (246)
T ss_dssp SCEEHHHHHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred CCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 36799999999999987533 3455 45544
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=191.75 Aligned_cols=223 Identities=14% Similarity=0.086 Sum_probs=160.5
Q ss_pred CC-CCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-
Q 020608 1 MS-KEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 1 m~-~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
|+ +++|++|||||+ |+||++++++|+++|++|++++|+.......+.+... ..++.++.+|++|.++++++++
T Consensus 1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~ 77 (275)
T 2pd4_A 1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQE---LNSPYVYELDVSKEEHFKSLYNS 77 (275)
T ss_dssp -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEcCCCCHHHHHHHHHH
Confidence 55 678999999999 9999999999999999999999986422222222211 1247789999999998887765
Q ss_pred ------CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCC
Q 020608 77 ------GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
++|+|||+||.... ..+.+.+...+++|+.++.++++++... ..++||++||.++..+...
T Consensus 78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~--- 154 (275)
T 2pd4_A 78 VKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAH--- 154 (275)
T ss_dssp HHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTT---
T ss_pred HHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCCCC---
Confidence 67999999997542 2245567889999999999999998765 1259999999866554321
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD 217 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 217 (323)
...|+.+|.+.+.+++.++.+. |+++++++||.+.++...... ........+....+.
T Consensus 155 ------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~p~ 215 (275)
T 2pd4_A 155 ------------------YNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIA-DFRMILKWNEINAPL 215 (275)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGST-THHHHHHHHHHHSTT
T ss_pred ------------------chhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhcc-ccHHHHHHHHhcCCc
Confidence 1349999999999999888775 899999999999998643211 111222222222111
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|++++.++.... ..|+ +++.+.
T Consensus 216 ------~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg 249 (275)
T 2pd4_A 216 ------RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAG 249 (275)
T ss_dssp ------SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 125689999999999987532 2455 445443
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=190.84 Aligned_cols=222 Identities=19% Similarity=0.172 Sum_probs=157.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhc-cCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL-EGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+... +....+ ...+.++.++.+|++|.++++++++
T Consensus 18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (267)
T 1vl8_A 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS--EAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 95 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999753222 122222 1113468889999999998887766
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccc-cccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSIS-SITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~-~~~~~~~~~~~~~~ 144 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++ ++.+.++||++||.+ +..+...
T Consensus 96 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~------- 168 (267)
T 1vl8_A 96 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPN------- 168 (267)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSS-------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCCCC-------
Confidence 7899999999754321 33456789999999999998887 344568999999985 3322211
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+++.++.+ +|+++++++||.+.++...... ........+....+ .
T Consensus 169 --------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~p----~ 229 (267)
T 1vl8_A 169 --------------ISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVF-SDPEKLDYMLKRIP----L 229 (267)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHH-TCHHHHHHHHHTCT----T
T ss_pred --------------ChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccc-cChHHHHHHHhhCC----C
Confidence 134999999999999998876 4899999999999987532100 00111222222221 1
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
..+++++|+|++++.++.... ..|+ +.+.+
T Consensus 230 --~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 262 (267)
T 1vl8_A 230 --GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDG 262 (267)
T ss_dssp --SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCcCHHHHHHHHHHHcCccccCCcCCeEEECC
Confidence 236789999999999987532 3455 44543
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=192.35 Aligned_cols=220 Identities=16% Similarity=0.132 Sum_probs=159.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEec-CCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVK-NLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.++|+||||||+|+||++++++|+++|++|+++.+ +..... +....+.....++.++.+|++|.++++++++
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRV--KWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE 88 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHH--HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHH--HHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999884 433322 2222222234578999999999998888776
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||.+++.+....
T Consensus 89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 160 (256)
T 3ezl_A 89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQ-------- 160 (256)
T ss_dssp TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCSCC--------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCCCC--------
Confidence 689999999976432 234567789999999998888876 34456799999999777654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ......+....+ .
T Consensus 161 -------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~~~------~ 218 (256)
T 3ezl_A 161 -------------TNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIR---PDVLEKIVATIP------V 218 (256)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC---HHHHHHHHHHST------T
T ss_pred -------------cccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccC---HHHHHHHHhcCC------C
Confidence 34999999999999988877 4899999999999987543221 122223222221 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|++++.++.... ..|+ +++.++
T Consensus 219 ~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG 252 (256)
T 3ezl_A 219 RRLGSPDEIGSIVAWLASEESGFSTGADFSLNGG 252 (256)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCC
Confidence 236789999999999986432 3455 566543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=196.42 Aligned_cols=202 Identities=14% Similarity=0.069 Sum_probs=152.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|+||||||+|+||++++++|+++|++|++++|+.+... +..+.+...+.++.++.+|++|.++++++++
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE--ETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHH--HHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999753222 2222232224578999999999998887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++. +.+.++||++||..++.+...
T Consensus 105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 176 (272)
T 1yb1_A 105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPF-------- 176 (272)
T ss_dssp HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHH--------
T ss_pred HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCC--------
Confidence 7899999999754322 234566889999999888887763 456689999999865543210
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC------CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK------GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
...|+.+|.+.+.+++.++.+. |++++++|||.+.++..... . .
T Consensus 177 -------------~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~---~----~---------- 226 (272)
T 1yb1_A 177 -------------LLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP---S----T---------- 226 (272)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT---H----H----------
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc---c----c----------
Confidence 1449999999999999888764 89999999999999863210 0 0
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
....+++++|+|++++.++..+.
T Consensus 227 --~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 227 --SLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp --HHCCCCCHHHHHHHHHHHHHTTC
T ss_pred --cccCCCCHHHHHHHHHHHHHcCC
Confidence 01236789999999999998653
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=189.41 Aligned_cols=198 Identities=17% Similarity=0.055 Sum_probs=148.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
|++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+. .++.++.+|++|.++++++++
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQ--QQELLLG---NAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHG---GGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHhc---CCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999753222 2222222 258899999999998887765
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++.. .+ +++|++||.++..+....
T Consensus 76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~~~~~~--------- 145 (235)
T 3l6e_A 76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-GVLANVLSSAAQVGKANE--------- 145 (235)
T ss_dssp CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCEECCSSCSSH---------
T ss_pred CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEeCHHhcCCCCCC---------
Confidence 689999999985432 24566788999999999999998733 33 399999998766654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.||.+.+.+.+.++.+. |+++++++||.+.++....... . ...
T Consensus 146 ------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~------------~------~~~ 195 (235)
T 3l6e_A 146 ------------SLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDH------------V------DPS 195 (235)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------------------
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccCC------------C------CCc
Confidence 349999999999999998874 8999999999998875321100 0 011
Q ss_pred CcccHHHHHHHHHHhhcCCCC
Q 020608 225 GSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~ 245 (323)
.+++++|+|++++.++..+..
T Consensus 196 ~~~~pedvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 196 GFMTPEDAAAYMLDALEARSS 216 (235)
T ss_dssp -CBCHHHHHHHHHHHTCCCSS
T ss_pred CCCCHHHHHHHHHHHHhCCCC
Confidence 367899999999999986544
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-25 Score=184.63 Aligned_cols=222 Identities=19% Similarity=0.129 Sum_probs=162.0
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||++.||+++++.|+++|++|++.+|+.+.....+...+ ...++.++.+|++|+++++++++
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~v~~~~~ 79 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQ---RQPRATYLPVELQDDAQCRDAVAQTIA 79 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHH---HCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHh---cCCCEEEEEeecCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999998766443333322 24578999999999998887665
Q ss_pred ---CCCEEEEcccCCccC---CCCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 ---GCTGVFHLASPCIVD---KVEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|++|||||..... .+.+.|...+++|+.++..+.+++... +-+++|++||.++..+.+..
T Consensus 80 ~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~--------- 150 (258)
T 4gkb_A 80 TFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQGNT--------- 150 (258)
T ss_dssp HHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCCSSC---------
T ss_pred HhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCCCCc---------
Confidence 689999999975322 245678899999999999999887321 23699999999877665431
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCch---hHHHHHHHHcCCCCCccC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNA---SMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~---~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.||.....+.+.++.+ +|++++.|.||.|..|........ .......+....|. +
T Consensus 151 ------------~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl--g- 215 (258)
T 4gkb_A 151 ------------SGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL--G- 215 (258)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT--T-
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC--C-
Confidence 34999999999999988876 489999999999999865422110 01112222222211 1
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
..+..++|+|.+++.++.... ..|+.+.
T Consensus 216 --~R~g~peeiA~~v~fLaS~~a~~iTG~~i~ 245 (258)
T 4gkb_A 216 --RRFTTPDEIADTAVFLLSPRASHTTGEWLF 245 (258)
T ss_dssp --TSCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred --CCCcCHHHHHHHHHHHhCchhcCccCCeEE
Confidence 125679999999999987543 3556443
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=199.88 Aligned_cols=235 Identities=17% Similarity=0.120 Sum_probs=170.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC-------C-cHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL-------S-DERETAHLKALEGADTRLRLFQIDLLDYDAIAAA 74 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-------~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (323)
+++|++|||||+|+||++++++|+++|++|++++|+. . ........+.+...+.++.++.+|++|.++++++
T Consensus 25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 104 (322)
T 3qlj_A 25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL 104 (322)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 4678999999999999999999999999999998861 0 1112222333333345788999999999998887
Q ss_pred hc-------CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhCC----------cCEEEEeccccccc
Q 020608 75 VT-------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKALG----------VKRVVVTSSISSIT 133 (323)
Q Consensus 75 ~~-------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~----------~~~~v~~SS~~~~~ 133 (323)
++ ++|+||||||..... .+.+.+...+++|+.++.++++++...- -++||++||.+++.
T Consensus 105 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~ 184 (322)
T 3qlj_A 105 IQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQ 184 (322)
T ss_dssp HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHcc
Confidence 76 789999999976432 2455678899999999999999874321 15999999997776
Q ss_pred CCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHH
Q 020608 134 PSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLR 210 (323)
Q Consensus 134 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~ 210 (323)
+.... ..|+.||.+.+.+++.++.+ +|+++++++|| +.++.......... .
T Consensus 185 ~~~~~---------------------~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~---~- 238 (322)
T 3qlj_A 185 GSVGQ---------------------GNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMM---A- 238 (322)
T ss_dssp CBTTC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC-------
T ss_pred CCCCC---------------------ccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhh---h-
Confidence 54321 34999999999999998877 58999999999 77765432211110 0
Q ss_pred HHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC------------------ccCHHHHHHHHHHHC
Q 020608 211 LLQGCTDTYENFFMGSVHFKDVALAHILVYENPSA--CGR-HLCVEA------------------ISHYGDFVAKVAELY 269 (323)
Q Consensus 211 ~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~------------------~~~~~e~~~~i~~~~ 269 (323)
.+...+.+++++|+|.+++.++..... .|+ +++.++ ..++.|+++.+.+.+
T Consensus 239 --------~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~ 310 (322)
T 3qlj_A 239 --------TQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLL 310 (322)
T ss_dssp -------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHH
T ss_pred --------ccccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHh
Confidence 111223467899999999999875432 344 555432 236789999998887
Q ss_pred CC
Q 020608 270 PE 271 (323)
Q Consensus 270 ~~ 271 (323)
+.
T Consensus 311 ~~ 312 (322)
T 3qlj_A 311 GK 312 (322)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=194.25 Aligned_cols=226 Identities=12% Similarity=0.070 Sum_probs=158.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHH-HHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERET-AHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
++++|++|||||+|+||++++++|+++|++|+++.|...+.+.. +..+.+...+.++.++.+|++|.++++++++
T Consensus 8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999998865443332 3333444445678999999999999888776
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||...... +.+.+...+++|+.++.++++++... +.+++|++||.++..+....
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~--------- 158 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFY--------- 158 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHCCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCCCC---------
Confidence 6899999999754322 44567889999999999999998764 34699999998766554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.||.+.+.+++.++.+. |+++++++||.+.++........ ......... ....
T Consensus 159 ------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~--~~~~~~~~~------~~~~ 218 (262)
T 3ksu_A 159 ------------STYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETK--ESTAFHKSQ------AMGN 218 (262)
T ss_dssp ------------CC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC--------------------CCC
T ss_pred ------------chhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCch--HHHHHHHhc------Cccc
Confidence 349999999999999998885 89999999999987642111100 000000000 0112
Q ss_pred CcccHHHHHHHHHHhhcCCC-CCcc-EEEEcCcc
Q 020608 225 GSVHFKDVALAHILVYENPS-ACGR-HLCVEAIS 256 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~-~~~~-~~~~~~~~ 256 (323)
.+.+++|+|++++.++.... ..|+ +++.|+..
T Consensus 219 r~~~pedvA~~v~~L~s~~~~itG~~i~vdGg~~ 252 (262)
T 3ksu_A 219 QLTKIEDIAPIIKFLTTDGWWINGQTIFANGGYT 252 (262)
T ss_dssp CSCCGGGTHHHHHHHHTTTTTCCSCEEEESTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCCCccCCEEEECCCcc
Confidence 36789999999999998621 2455 55655433
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=187.21 Aligned_cols=219 Identities=19% Similarity=0.112 Sum_probs=160.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +..+++ +.++.++.+|++|.++++++++
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIA--RIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999743222 222222 2478999999999998887654
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
++|+|||+||...... +.+.+...+++|+.++.++++++... ..++||++||.+++.+.+..
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~----------- 149 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGM----------- 149 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCTTB-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCc-----------
Confidence 6899999999764322 45667889999999999999998654 23599999999766554321
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchh--H-HHHHHHHcCCCCCccCcC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNAS--M-LMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~--~-~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+.+.++.+. |+++++++||.+.+|......... . ..........+ .
T Consensus 150 ----------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p------~ 213 (255)
T 4eso_A 150 ----------SVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITP------M 213 (255)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHST------T
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCC------C
Confidence 349999999999999998875 899999999999998653211111 1 11111111111 1
Q ss_pred CCcccHHHHHHHHHHhhcC-CCCCcc-EEEEc
Q 020608 224 MGSVHFKDVALAHILVYEN-PSACGR-HLCVE 253 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~-~~~~~~-~~~~~ 253 (323)
..+.+++|+|++++.++.. ....|+ +++.+
T Consensus 214 ~r~~~pedvA~~v~~L~s~~~~itG~~i~vdG 245 (255)
T 4eso_A 214 KRNGTADEVARAVLFLAFEATFTTGAKLAVDG 245 (255)
T ss_dssp SSCBCHHHHHHHHHHHHHTCTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHcCcCcCccCCEEEECC
Confidence 2256899999999999875 223455 55643
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=193.90 Aligned_cols=224 Identities=17% Similarity=0.111 Sum_probs=154.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC--CCCeEEEEccCCCHhHHHHHhc-----
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+... +.++.++.+|++|.++++++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGV--QCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998743221 222222221 2368899999999998887765
Q ss_pred --CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHH----HhhCC---cCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA----AKALG---VKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~----~~~~~---~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||.. ..+++...+++|+.++.++.+. +++.+ .++||++||.+++.+.+..
T Consensus 84 ~g~id~lv~~Ag~~----~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 150 (267)
T 2gdz_A 84 FGRLDILVNNAGVN----NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQ--------- 150 (267)
T ss_dssp HSCCCEEEECCCCC----CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTC---------
T ss_pred cCCCCEEEECCCCC----ChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCCCC---------
Confidence 579999999974 3467888999999976665555 44432 5799999999665543211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHH--H---hCCccEEEEcCCCccCCCCCCCCchhHH-----HHHHHHcCCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFA--K---EKGLDVVVVNPGTVMGPVIPPTLNASML-----MLLRLLQGCTD 217 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~--~---~~~~~~~~~Rp~~v~G~~~~~~~~~~~~-----~~~~~~~g~~~ 217 (323)
..|+.+|.+.+.+++.++ . ..|+++++++||.+.+|........... .......
T Consensus 151 ------------~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---- 214 (267)
T 2gdz_A 151 ------------PVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKD---- 214 (267)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHH----
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHHH----
Confidence 349999999999988742 2 3589999999999988742110000000 0000000
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCCCCcc-EEEE-cCccCHHH
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPSACGR-HLCV-EAISHYGD 260 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~-~~~~~~~e 260 (323)
+.....+++++|+|++++.++......|+ ++++ ++.+++.|
T Consensus 215 --~~~~~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 215 --MIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp --HHHHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECC
T ss_pred --HhccccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccC
Confidence 01112367999999999999987655555 6675 45555544
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-25 Score=186.72 Aligned_cols=223 Identities=13% Similarity=0.057 Sum_probs=162.4
Q ss_pred CCCCceEEEeccccH--HHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 2 SKEAEVVCVTGGSGC--IGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
++++|++|||||+|+ ||++++++|+++|++|+++.|+.........+.... ...++.++.+|++|.++++++++
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTL-DRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTS-SSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhc-CCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999988 999999999999999999998753333322222111 12378999999999998887765
Q ss_pred ----CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCCCc
Q 020608 77 ----GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+|||+||.... ..+.+.+...+++|+.++.++++++...- .++||++||.+++.+.+..
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~---- 158 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNY---- 158 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTTT----
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccCCCc----
Confidence 68999999997541 12445677899999999999999986642 3599999999776554321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.||.+.+.+++.++.+. |+++++++||.+.++....... .......+....+.
T Consensus 159 -----------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~~~-- 218 (266)
T 3oig_A 159 -----------------NVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISD-FNSILKDIEERAPL-- 218 (266)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTT-HHHHHHHHHHHSTT--
T ss_pred -----------------chhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccc-hHHHHHHHHhcCCC--
Confidence 349999999999999988774 8999999999999986543221 12222232222211
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
..+.+++|+|++++.++.... ..|+ +++.+
T Consensus 219 ----~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdG 251 (266)
T 3oig_A 219 ----RRTTTPEEVGDTAAFLFSDMSRGITGENLHVDS 251 (266)
T ss_dssp ----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ----CCCCCHHHHHHHHHHHcCCchhcCcCCEEEECC
Confidence 226789999999999997533 3455 55644
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=193.26 Aligned_cols=212 Identities=18% Similarity=0.142 Sum_probs=155.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+..... ....+.+|++|.+++.++++
T Consensus 25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~-------------~~~~~~~Dv~~~~~~~~~~~~~~~~ 91 (266)
T 3uxy_A 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-------------ADLHLPGDLREAAYADGLPGAVAAG 91 (266)
T ss_dssp -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC-------------CSEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-------------hhhccCcCCCCHHHHHHHHHHHHHh
Confidence 356799999999999999999999999999999988753211 22445899999988776654
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+||||||..... ...+.+...+++|+.++.++++++ ++.+.++||++||.+++.+....
T Consensus 92 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~-------- 163 (266)
T 3uxy_A 92 LGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGH-------- 163 (266)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCTTB--------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCC--------
Confidence 789999999986432 245567889999999999999998 44556799999999766544321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC----CchhHHHHHHHHcCCCCCc
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT----LNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~----~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.||.+.+.+++.++.+. |+++++++||.+++|..... ..........+....+
T Consensus 164 -------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p--- 227 (266)
T 3uxy_A 164 -------------ALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVP--- 227 (266)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTST---
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcCC---
Confidence 349999999999999988775 89999999999998742110 0000111122222211
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
...+.+++|+|++++.++.... ..|+ +++.+
T Consensus 228 ---~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 261 (266)
T 3uxy_A 228 ---LGRIAEPEDIADVVLFLASDAARYLCGSLVEVNG 261 (266)
T ss_dssp ---TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred ---CCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECc
Confidence 1236799999999999997643 2455 55643
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=195.05 Aligned_cols=223 Identities=14% Similarity=0.110 Sum_probs=160.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-GADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +....+. ..+.++.++.+|++|.++++++++
T Consensus 25 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVL--TAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKE 102 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH--HHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999753222 2222221 113578999999999998887765
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++. +.+.++||++||..+..+....
T Consensus 103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 174 (277)
T 4fc7_A 103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQ-------- 174 (277)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCTTC--------
T ss_pred cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCc--------
Confidence 789999999965322 2456678899999999999999973 2334699999999777654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+.++....................+ .
T Consensus 175 -------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p------~ 235 (277)
T 4fc7_A 175 -------------VHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASP------L 235 (277)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTST------T
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCC------C
Confidence 349999999999999988774 899999999999987421000000112222222221 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|.+++.++.... ..|+ +++.++
T Consensus 236 ~r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG 269 (277)
T 4fc7_A 236 QRLGNKTEIAHSVLYLASPLASYVTGAVLVADGG 269 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHcCCccCCcCCCEEEECCC
Confidence 236789999999999997533 3455 555443
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=196.04 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=155.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC---EEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc-
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY---TVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
+++|++|||||+|+||++++++|+++|+ +|++.+|+.+... +..+.+.. .+.++.++.+|++|.++++++++
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLE--ELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHH--HHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHH--HHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 4678999999999999999999999987 9999998753322 22222221 23578899999999999998876
Q ss_pred ------CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCC
Q 020608 77 ------GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPAD 141 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~ 141 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||.++..+....
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~--- 185 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTG--- 185 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTC---
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCCCC---
Confidence 579999999975321 144567889999999999999997 34456799999999776554321
Q ss_pred ccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC
Q 020608 142 KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT 218 (323)
Q Consensus 142 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 218 (323)
..|+.+|.+.+.+.+.++.+ .|+++++++||.|.++....................
T Consensus 186 ------------------~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--- 244 (287)
T 3rku_A 186 ------------------SIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDT--- 244 (287)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTTS---
T ss_pred ------------------chHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhccc---
Confidence 34999999999999999888 489999999999998742100000001111111111
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCCC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
.+++++|+|++++.++.....
T Consensus 245 ------~p~~pedvA~~v~~l~s~~~~ 265 (287)
T 3rku_A 245 ------TPLMADDVADLIVYATSRKQN 265 (287)
T ss_dssp ------CCEEHHHHHHHHHHHHTSCTT
T ss_pred ------CCCCHHHHHHHHHHHhCCCCC
Confidence 134899999999999986654
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-25 Score=192.08 Aligned_cols=227 Identities=18% Similarity=0.124 Sum_probs=161.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc---------HHH-HHHHhhccCCCCCeEEEEccCCCHhHHH
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD---------ERE-TAHLKALEGADTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 72 (323)
+++|++|||||+|+||++++++|+++|++|++++|+... .+. .+..+.+...+.++.++.+|++|.++++
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ 123 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 567899999999999999999999999999999886321 222 2222233333567899999999999988
Q ss_pred HHhc-------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CC-cCEEEEecccccccCCC
Q 020608 73 AAVT-------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LG-VKRVVVTSSISSITPSP 136 (323)
Q Consensus 73 ~~~~-------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~v~~SS~~~~~~~~ 136 (323)
++++ ++|+||||||...... +.+.+...+++|+.++.++++++.. .+ .++||++||..++.+..
T Consensus 124 ~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~ 203 (317)
T 3oec_A 124 AVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAP 203 (317)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSCCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCCCC
Confidence 8776 7899999999764322 4456788999999999999998732 32 46899999997765543
Q ss_pred CCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC----------ch
Q 020608 137 KWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL----------NA 203 (323)
Q Consensus 137 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~----------~~ 203 (323)
.. ..|+.||.+.+.+++.++.+. |+++++++||.|++|...... ..
T Consensus 204 ~~---------------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 262 (317)
T 3oec_A 204 GQ---------------------SHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENP 262 (317)
T ss_dssp TB---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSC
T ss_pred CC---------------------cchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhcccc
Confidence 21 349999999999999998774 899999999999997432100 00
Q ss_pred hHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 204 SMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 204 ~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
............ ......+++++|+|.+++.++.... ..|+ +++.++
T Consensus 263 ~~~~~~~~~~~~----~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG 312 (317)
T 3oec_A 263 TREDAAELFSQL----TLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGG 312 (317)
T ss_dssp CHHHHHHHHTTT----CSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred chhHHHHHHhhh----ccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcc
Confidence 000001111110 0111457899999999999986533 3455 556543
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=189.25 Aligned_cols=209 Identities=17% Similarity=0.143 Sum_probs=157.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC---CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR---YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
++||+||||||+|+||++++++|+++| ++|++++|+.........+.. ...++.++.+|++|.++++++++
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~ 95 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK---NHSNIHILEIDLRNFDAYDKLVADIE 95 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHH---HCTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhc---cCCceEEEEecCCChHHHHHHHHHHH
Confidence 578999999999999999999999999 999999998765443222221 13478999999999999888776
Q ss_pred ------CCCEEEEcccCCc-c----CCCCCchhhhhhHHHHHHHHHHHHHhhC----------C-----cCEEEEecccc
Q 020608 77 ------GCTGVFHLASPCI-V----DKVEDPQNQLLNPAVKGTVNVLTAAKAL----------G-----VKRVVVTSSIS 130 (323)
Q Consensus 77 ------~~d~Vih~a~~~~-~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~-----~~~~v~~SS~~ 130 (323)
++|+|||+||... . ....+.+...+++|+.++.++++++... + .++||++||..
T Consensus 96 ~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~ 175 (267)
T 1sny_A 96 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 175 (267)
T ss_dssp HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred HhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccc
Confidence 7999999999754 1 1234567789999999999999998442 2 46999999986
Q ss_pred cccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHH
Q 020608 131 SITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLM 207 (323)
Q Consensus 131 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~ 207 (323)
++.+.... + ....|+.+|.+.+.+++.++.+ .+++++++|||.+.++....
T Consensus 176 ~~~~~~~~----------~--------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------- 229 (267)
T 1sny_A 176 GSIQGNTD----------G--------GMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS-------- 229 (267)
T ss_dssp GCSTTCCS----------C--------CCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT--------
T ss_pred ccccCCCC----------C--------CchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC--------
Confidence 65543210 0 1134999999999999998877 58999999999998875321
Q ss_pred HHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEE-EcCcc
Q 020608 208 LLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLC-VEAIS 256 (323)
Q Consensus 208 ~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~-~~~~~ 256 (323)
..++.++|+|+.++.++.... ..|.|.. .+..+
T Consensus 230 ----------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~ 265 (267)
T 1sny_A 230 ----------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPL 265 (267)
T ss_dssp ----------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBC
T ss_pred ----------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcCc
Confidence 124678999999999987532 3455543 34433
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-26 Score=186.73 Aligned_cols=204 Identities=17% Similarity=0.120 Sum_probs=153.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---C
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---G 77 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~ 77 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+.. +|++|+++++++++ +
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----------------------~D~~~~~~v~~~~~~~g~ 59 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG----------------------LDISDEKSVYHYFETIGA 59 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT----------------------CCTTCHHHHHHHHHHHCS
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc----------------------cCCCCHHHHHHHHHHhCC
Confidence 5677899999999999999999999999999999988631 89999999888876 6
Q ss_pred CCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 78 CTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 78 ~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
+|+||||||.... ..+.+.+...+++|+.++.++++++...- .+++|++||..++.+...
T Consensus 60 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~------------- 126 (223)
T 3uce_A 60 FDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVAN------------- 126 (223)
T ss_dssp EEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCTT-------------
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCCC-------------
Confidence 8999999997522 12345677889999999999999986642 248999999966554332
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhCC-ccEEEEcCCCccCCCCCCCCchhH-HHHHHHHcCCCCCccCcCCCccc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG-LDVVVVNPGTVMGPVIPPTLNASM-LMLLRLLQGCTDTYENFFMGSVH 228 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~Rp~~v~G~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~i~ 228 (323)
...|+.+|.+.+.+++.++.+++ ++++.++||.+.+|.......... ..........+ ...+.+
T Consensus 127 --------~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 192 (223)
T 3uce_A 127 --------TYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLP------VGKVGE 192 (223)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHST------TCSCBC
T ss_pred --------chHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCC------CCCccC
Confidence 13499999999999999998864 999999999999986543222111 12222222221 123678
Q ss_pred HHHHHHHHHHhhcCCCCCcc-EEEEc
Q 020608 229 FKDVALAHILVYENPSACGR-HLCVE 253 (323)
Q Consensus 229 v~D~a~~~~~~~~~~~~~~~-~~~~~ 253 (323)
++|+|++++.+++.....|+ +++.+
T Consensus 193 ~~dvA~~~~~l~~~~~~tG~~i~vdg 218 (223)
T 3uce_A 193 ASDIAMAYLFAIQNSYMTGTVIDVDG 218 (223)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred HHHHHHHHHHHccCCCCCCcEEEecC
Confidence 99999999999986655666 55644
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=185.41 Aligned_cols=202 Identities=17% Similarity=0.115 Sum_probs=153.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-GADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+||++|||||+|+||++++++|+++|++|++++|+.+.... ..+.+. ..+.++.++.+|++|.++++++++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEK--IAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH--HHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH--HHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999997533222 222221 124578999999999999998876
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+|||+||...... +.+.+...+++|+.++.++++++... +.+++|++||..+..+.+..
T Consensus 79 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~---------- 148 (235)
T 3l77_A 79 GDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLIPYG---------- 148 (235)
T ss_dssp SSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCCTTC----------
T ss_pred CCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccCCCc----------
Confidence 6899999999864432 44567889999999999999997542 23588888887565543211
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHhC-CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcc
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSV 227 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 227 (323)
..|+.+|.+.+.+++.+..+. ++++++++||.+.++....... . .....++
T Consensus 149 -----------~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~~------------~-----~~~~~~~ 200 (235)
T 3l77_A 149 -----------GGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKPG------------K-----PKEKGYL 200 (235)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCSC------------C-----CGGGTCB
T ss_pred -----------chHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccCC------------c-----ccccCCC
Confidence 349999999999999885554 9999999999998875432110 0 0111467
Q ss_pred cHHHHHHHHHHhhcCCCC
Q 020608 228 HFKDVALAHILVYENPSA 245 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~~~ 245 (323)
.++|+|++++.++..+..
T Consensus 201 ~p~dva~~v~~l~~~~~~ 218 (235)
T 3l77_A 201 KPDEIAEAVRCLLKLPKD 218 (235)
T ss_dssp CHHHHHHHHHHHHTSCTT
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 899999999999987654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=187.99 Aligned_cols=222 Identities=13% Similarity=0.059 Sum_probs=162.3
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||++.||+++++.|+++|++|++.+|+.+ ...+..+++...+.++.++.+|++|+++++++++
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~--~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRAT--LLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHH--HHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999988642 2233444454445688999999999999887765
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh-----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK-----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|++|||||...... +.++|+..+++|+.++..+.+++. +.+.+++|++||.++..+.+..
T Consensus 84 ~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~------- 156 (255)
T 4g81_D 84 GIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTV------- 156 (255)
T ss_dssp TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTC-------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCc-------
Confidence 6899999999764322 566889999999999999998862 2344699999999776654421
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.||.....+.+.++.+ +|++++.|.||.+..|...... ........+....| .+
T Consensus 157 --------------~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~-~~~~~~~~~~~~~P----l~ 217 (255)
T 4g81_D 157 --------------APYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALI-EDKQFDSWVKSSTP----SQ 217 (255)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHH-TCHHHHHHHHHHST----TC
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhccc-CCHHHHHHHHhCCC----CC
Confidence 34999999999999888877 4899999999999987532100 00111122222111 11
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCccEE-EEc
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGRHL-CVE 253 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~~~-~~~ 253 (323)
.+..++|+|.+++.++.... -.|+.+ +.+
T Consensus 218 --R~g~pediA~~v~fL~S~~a~~iTG~~i~VDG 249 (255)
T 4g81_D 218 --RWGRPEELIGTAIFLSSKASDYINGQIIYVDG 249 (255)
T ss_dssp --SCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCcCHHHHHHHHHHHhCchhCCCcCCEEEECC
Confidence 14578999999999986533 345543 443
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=196.85 Aligned_cols=224 Identities=15% Similarity=0.044 Sum_probs=160.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+..... .+.+...+.++.++.+|++|.++++++++
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAV--QQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHH--HHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH--HHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999987544332 22222234578999999999988887765
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||..++.+...
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~---------- 177 (275)
T 4imr_A 108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKSV---------- 177 (275)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCC----------
Confidence 789999999975332 245567889999999999999997 3345579999999966553221
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
...|+.||.+.+.+++.++.++ |+++++++||.+.+|..................... +. .
T Consensus 178 -----------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~---p~--~ 241 (275)
T 4imr_A 178 -----------VTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLN---WM--G 241 (275)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHS---TT--C
T ss_pred -----------chhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcC---cc--C
Confidence 1349999999999999988775 899999999999887421100000011111111110 11 1
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.+..++|+|.+++.++.... ..|+ +++.+
T Consensus 242 r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 273 (275)
T 4imr_A 242 RAGRPEEMVGAALFLASEACSFMTGETIFLTG 273 (275)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CCcCHHHHHHHHHHHcCcccCCCCCCEEEeCC
Confidence 25678999999999997543 2455 44543
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-26 Score=193.27 Aligned_cols=212 Identities=18% Similarity=0.181 Sum_probs=148.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC--CCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+..+.. +..+.+... ..++.++.+|++|.++++++++
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 107 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE--ELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 107 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHH--HHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999753222 222222211 2357889999999999887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHH----HHHHHHHHhhCCc--CEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKG----TVNVLTAAKALGV--KRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~----~~~l~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+|||+||...... ..+.+...+++|+.+ ++.++..+++.+. ++||++||.+++...+.
T Consensus 108 ~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~~~------ 181 (279)
T 1xg5_A 108 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPL------ 181 (279)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSC------
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccCCC------
Confidence 7899999999754322 334577899999999 6666666677665 79999999855421110
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh-----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT 218 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 218 (323)
. ....|+.+|.+.+.+++.++.+ .++++++++||.+.++.................
T Consensus 182 -------~------~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~------ 242 (279)
T 1xg5_A 182 -------S------VTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY------ 242 (279)
T ss_dssp -------G------GGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH------
T ss_pred -------C------CCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChhHHhhhc------
Confidence 0 0145999999999998887765 479999999999988742100000000000000
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
....+++++|+|++++.++..+.
T Consensus 243 ---~~~~~~~~~dvA~~i~~l~~~~~ 265 (279)
T 1xg5_A 243 ---EQMKCLKPEDVAEAVIYVLSTPA 265 (279)
T ss_dssp ---C---CBCHHHHHHHHHHHHHSCT
T ss_pred ---ccccCCCHHHHHHHHHHHhcCCc
Confidence 11236799999999999998654
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=192.33 Aligned_cols=213 Identities=17% Similarity=0.146 Sum_probs=151.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+... ...+.++.+|++|.++++++++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLD--AAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAE 108 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999753322 222222111 1235889999999998887765
Q ss_pred --CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhh----CC--cCEEEEecccccccCCCCCCCCcc
Q 020608 77 --GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKA----LG--VKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++.. .+ .++||++||.++..+....
T Consensus 109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~----- 183 (281)
T 4dry_A 109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNS----- 183 (281)
T ss_dssp HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCTTC-----
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCCCC-----
Confidence 679999999975331 24566788999999999988888633 32 4699999999766544321
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+.+.+++.++.+ +|+++++++||.|.++..... ..+......
T Consensus 184 ----------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-----------~~~~~~~~~ 236 (281)
T 4dry_A 184 ----------------APYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARM-----------STGVLQANG 236 (281)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC------------------CEEECTTS
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhh-----------cchhhhhhh
Confidence 44999999999999998876 589999999999998753211 000000001
Q ss_pred -CcCCCcccHHHHHHHHHHhhcCCCCCccE
Q 020608 221 -NFFMGSVHFKDVALAHILVYENPSACGRH 249 (323)
Q Consensus 221 -~~~~~~i~v~D~a~~~~~~~~~~~~~~~~ 249 (323)
.....++.++|+|++++.++..+......
T Consensus 237 ~~~~~~~~~pedvA~~v~fL~s~~~~~~i~ 266 (281)
T 4dry_A 237 EVAAEPTIPIEHIAEAVVYMASLPLSANVL 266 (281)
T ss_dssp CEEECCCBCHHHHHHHHHHHHHSCTTEEEE
T ss_pred cccccCCCCHHHHHHHHHHHhCCCccCccc
Confidence 11123789999999999999987665443
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=189.54 Aligned_cols=221 Identities=16% Similarity=0.125 Sum_probs=155.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+ +.++.++.+|++|.++++++++
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQ--QLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHH--HHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999988642221 222222 3468899999999998887765
Q ss_pred -CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++ ++.+ ++||++||.+++.+...
T Consensus 79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~---------- 147 (253)
T 1hxh_A 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIEQ---------- 147 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCCCC----------
Confidence 579999999975432 134567889999999888777664 4456 89999999966554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---C--CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---K--GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~--~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
...|+.+|.+.+.+++.++.+ . |++++++|||.+++|........ ..............+
T Consensus 148 -----------~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~~~p-- 212 (253)
T 1hxh_A 148 -----------YAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPK--GVSKEMVLHDPKLNR-- 212 (253)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCT--TCCHHHHBCBTTTBT--
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccch--hhhHHHHhhhhccCc--
Confidence 134999999999999888766 3 89999999999999752110000 000110111000011
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+.+++|+|++++.++..+. ..|+ +++.++
T Consensus 213 ~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 247 (253)
T 1hxh_A 213 AGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp TCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence 1237899999999999987543 3455 455443
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=188.81 Aligned_cols=205 Identities=14% Similarity=0.111 Sum_probs=148.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHH-HHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERET-AHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+..... +.+........++.++.+|++|.++++++++
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999975332221 1111111112578899999999998887765
Q ss_pred --CCCEEEEcccCCccCC---CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVDK---VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.+++|++||.++..+...
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 154 (250)
T 3nyw_A 85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFAD---------- 154 (250)
T ss_dssp HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------CC----------
T ss_pred cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCCC----------
Confidence 6899999999753322 23456789999999999999997 3345579999999976654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
...|+.+|.+.+.+++.++.+. |+++++++||.+.++.. ... ... .+ ..
T Consensus 155 -----------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~-----------~~~--~~~--~~--~~ 206 (250)
T 3nyw_A 155 -----------GGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMA-----------KKA--GTP--FK--DE 206 (250)
T ss_dssp -----------TTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHH-----------HHT--TCC--SC--GG
T ss_pred -----------CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchh-----------hhc--CCC--cc--cc
Confidence 1449999999999999888774 89999999999977531 111 111 11 12
Q ss_pred CcccHHHHHHHHHHhhcCCCC
Q 020608 225 GSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~ 245 (323)
.+++++|+|++++.++..+..
T Consensus 207 ~~~~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 207 EMIQPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp GSBCHHHHHHHHHHHHTSCTT
T ss_pred cCCCHHHHHHHHHHHHcCCCc
Confidence 378999999999999986654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=186.45 Aligned_cols=217 Identities=18% Similarity=0.155 Sum_probs=157.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||+++++.|+++|++|++.+|+.+. ..+..+++ +.+..++.+|++|+++++++++
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~--l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDV--LDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999997432 22333333 3478889999999999887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
++|++|||||...... +.+.|...+++|+.++..+++++... .-+++|++||..+..+.+..
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~~~----------- 170 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTPAF----------- 170 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCTTC-----------
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCCCc-----------
Confidence 6799999999754322 45678999999999999999998543 13589999999776655421
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchh----HHHHHHHHcCCCCCccCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNAS----MLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~----~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.....+.+.++.++ |++++.|.||.+..|......... ......+...-| .+
T Consensus 171 ----------~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~P----lg 236 (273)
T 4fgs_A 171 ----------SVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVP----MG 236 (273)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHST----TS
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCC----CC
Confidence 349999999999999998775 899999999999988643221111 112222222221 11
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
+ +..++|+|.+++.|+.... -.|+.+.
T Consensus 237 R--~g~peeiA~~v~FLaSd~a~~iTG~~i~ 265 (273)
T 4fgs_A 237 R--VGRAEEVAAAALFLASDDSSFVTGAELF 265 (273)
T ss_dssp S--CBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred C--CcCHHHHHHHHHHHhCchhcCccCCeEe
Confidence 1 4579999999999997543 3555443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-25 Score=187.96 Aligned_cols=221 Identities=13% Similarity=0.032 Sum_probs=157.9
Q ss_pred CCCceEEEeccccH--HHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGC--IGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|++|||||+|+ ||++++++|+++|++|+++.|+.... +..+.+.....++.++.+|++|.++++++++
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALK---KRVEPLAEELGAFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHH---HHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHH---HHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence 56789999999988 99999999999999999998873222 2222221112368899999999999888765
Q ss_pred ---CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+||||||.... ..+.+.+...+++|+.++.++++++... ..++||++||.+++.+....
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~----- 180 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMPNY----- 180 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCTTT-----
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCCch-----
Confidence 68999999997631 2245677889999999999999998653 23599999999776554321
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.||.+.+.+++.++.++ |+++++++||.+.++....... ............+.
T Consensus 181 ----------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~p~--- 240 (293)
T 3grk_A 181 ----------------NVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGD-FRYILKWNEYNAPL--- 240 (293)
T ss_dssp ----------------THHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CC-HHHHHHHHHHHSTT---
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccc-hHHHHHHHHhcCCC---
Confidence 449999999999999988774 8999999999999986443221 11222222222211
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+.+++|+|++++.++.... ..|+ +++.++
T Consensus 241 ---~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 274 (293)
T 3grk_A 241 ---RRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSG 274 (293)
T ss_dssp ---SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCHHHHHHHHHHHcCccccCCcceEEEECCC
Confidence 226689999999999997533 3455 556443
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=187.86 Aligned_cols=209 Identities=18% Similarity=0.148 Sum_probs=151.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+++|++|||||+|+||++++++|+++|++|+++.|+.+.. ..+.++.+|++|.++++++++
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP-------------EGFLAVKCDITDTEQVEQAYKEIEET 84 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-------------TTSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh-------------ccceEEEecCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999975331 136789999999998887765
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++.. .+.++||++||.++..+.+.
T Consensus 85 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~--------- 155 (253)
T 2nm0_A 85 HGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAG--------- 155 (253)
T ss_dssp TCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHHH---------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCC---------
Confidence 479999999975432 25567889999999999999998643 35679999999855443210
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
...|+.+|.+.+.+.+.++.+ .|+++++++||.+.++...... ...........+ .
T Consensus 156 ------------~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---~~~~~~~~~~~p------~ 214 (253)
T 2nm0_A 156 ------------QANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLT---DEQRANIVSQVP------L 214 (253)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC------------CHHHHHTTCT------T
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcC---HHHHHHHHhcCC------C
Confidence 034999999999999988876 4899999999999887533110 001111212111 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
..+++++|+|++++.++..+. ..|+ +.+.+
T Consensus 215 ~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdG 247 (253)
T 2nm0_A 215 GRYARPEEIAATVRFLASDDASYITGAVIPVDG 247 (253)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHhCccccCCcCcEEEECC
Confidence 237899999999999987543 2455 44543
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=190.25 Aligned_cols=218 Identities=17% Similarity=0.106 Sum_probs=155.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC-CcHHHHHHHhhcc-CCCCCeEEEEccCCC----HhHHHHHh
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL-SDERETAHLKALE-GADTRLRLFQIDLLD----YDAIAAAV 75 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~----~~~~~~~~ 75 (323)
++++|++|||||+|+||++++++|+++|++|++++|+. +... +..+.+. ..+.++.++.+|++| .+++++++
T Consensus 20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~--~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~ 97 (288)
T 2x9g_A 20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAV--SLADELNKERSNTAVVCQADLTNSNVLPASCEEII 97 (288)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHH--HHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHH--HHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHH
Confidence 45789999999999999999999999999999999975 2222 2222222 123578899999999 88887766
Q ss_pred c-------CCCEEEEcccCCccCC--------------CCCchhhhhhHHHHHHHHHHHHHhhC----C------cCEEE
Q 020608 76 T-------GCTGVFHLASPCIVDK--------------VEDPQNQLLNPAVKGTVNVLTAAKAL----G------VKRVV 124 (323)
Q Consensus 76 ~-------~~d~Vih~a~~~~~~~--------------~~~~~~~~~~~n~~~~~~l~~~~~~~----~------~~~~v 124 (323)
+ ++|+||||||...... ..+.+...+++|+.++.++++++... + .++||
T Consensus 98 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv 177 (288)
T 2x9g_A 98 NSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIV 177 (288)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEE
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEE
Confidence 5 7899999999754221 12345678999999999999987432 2 46999
Q ss_pred EecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC
Q 020608 125 VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL 201 (323)
Q Consensus 125 ~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~ 201 (323)
++||.+++.+... ...|+.||.+.+.+.+.++.+. |+++++++||.+++|. . ..
T Consensus 178 ~isS~~~~~~~~~---------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~~ 234 (288)
T 2x9g_A 178 NLCDAMVDQPCMA---------------------FSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-MG 234 (288)
T ss_dssp EECCTTTTSCCTT---------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-SC
T ss_pred EEecccccCCCCC---------------------CchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-cC
Confidence 9999866544321 1349999999999999888774 8999999999999997 3 11
Q ss_pred chhHHHHHHHHcCCCCCccCcCCCc-ccHHHHHHHHHHhhcCCC--CCccE-EEEc
Q 020608 202 NASMLMLLRLLQGCTDTYENFFMGS-VHFKDVALAHILVYENPS--ACGRH-LCVE 253 (323)
Q Consensus 202 ~~~~~~~~~~~~g~~~~~~~~~~~~-i~v~D~a~~~~~~~~~~~--~~~~~-~~~~ 253 (323)
. .....+....+. ..+ .+++|+|++++.++.... ..|++ ++.+
T Consensus 235 --~-~~~~~~~~~~p~------~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdG 281 (288)
T 2x9g_A 235 --E-EEKDKWRRKVPL------GRREASAEQIADAVIFLVSGSAQYITGSIIKVDG 281 (288)
T ss_dssp --H-HHHHHHHHTCTT------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --h-HHHHHHHhhCCC------CCCCCCHHHHHHHHHHHhCccccCccCCEEEECc
Confidence 1 112222222211 124 689999999999997532 34554 4443
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=189.81 Aligned_cols=228 Identities=12% Similarity=0.049 Sum_probs=161.5
Q ss_pred CCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+||||||+ |+||++++++|+++|++|++++|+.......+.+.+ ...++.++.+|++|.++++++++
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAA---EFGSELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHH---HTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHH---HcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 568999999999 999999999999999999999997433333222221 12357889999999999888776
Q ss_pred ---CCCEEEEcccCCccC---------CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCc
Q 020608 77 ---GCTGVFHLASPCIVD---------KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+||||||..... ...+.+...+++|+.++.++++++... ..+++|++||.+++.+.+..
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~---- 164 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNY---- 164 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTT----
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCCCc----
Confidence 679999999976431 234567889999999999999998654 23589999999776554321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.|.++..... ..............+
T Consensus 165 -----------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~--- 223 (271)
T 3ek2_A 165 -----------------NTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI-KSFGKILDFVESNSP--- 223 (271)
T ss_dssp -----------------THHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC-HHHHHHHHHHHHHST---
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc-cchHHHHHHHHhcCC---
Confidence 449999999999999988764 89999999999999865432 111122222222221
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEE-cCccCHHHH
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCV-EAISHYGDF 261 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~-~~~~~~~e~ 261 (323)
...+.+++|+|++++.++.... ..|+ +++. +...++.++
T Consensus 224 ---~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~ 266 (271)
T 3ek2_A 224 ---LKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGM 266 (271)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC
T ss_pred ---cCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhh
Confidence 1226789999999999997532 3455 5665 334444443
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=187.25 Aligned_cols=210 Identities=20% Similarity=0.123 Sum_probs=151.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|+||||||+|+||++++++|+++|++|++++|+.+... ....+.+|++|.++++++++
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-------------GLFGVEVDVTDSDAVDRAFTAVEEH 78 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH-------------HhcCeeccCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999764321 12247899999998887765
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++. +.+.++||++||..++++...
T Consensus 79 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 149 (247)
T 1uzm_A 79 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGN--------- 149 (247)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----C---------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCCC---------
Confidence 679999999975421 2345678899999999999999874 355679999999966654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
...|+.+|.+.+.+.+.++.+ .|+++++++||.+.++...... ........... + .
T Consensus 150 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~~----p--~ 208 (247)
T 1uzm_A 150 ------------QANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALD---ERIQQGALQFI----P--A 208 (247)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSC---HHHHHHHGGGC----T--T
T ss_pred ------------ChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcC---HHHHHHHHhcC----C--C
Confidence 134999999999999888876 4899999999999887421100 11111111111 1 1
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..+++++|+|++++.++.... ..|+ +++.++
T Consensus 209 ~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG 242 (247)
T 1uzm_A 209 KRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 242 (247)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHcCccccCCcCCEEEECCC
Confidence 237899999999999987532 2455 555443
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-25 Score=186.79 Aligned_cols=220 Identities=12% Similarity=0.056 Sum_probs=160.9
Q ss_pred CCCceEEEeccccH--HHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGC--IGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|+||||||+|+ ||++++++|+++|++|++++|+. ..+..+.+ .....++.++.+|++|.++++++++
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l---~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKL---CAEFNPAAVLPCDVISDQEIKDLFVELGK 99 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHH---HGGGCCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-HHHHHHHH---HHhcCCceEEEeecCCHHHHHHHHHHHHH
Confidence 56789999999966 99999999999999999999986 22222222 2222358899999999999888765
Q ss_pred ---CCCEEEEcccCCccC---------CCCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCC
Q 020608 77 ---GCTGVFHLASPCIVD---------KVEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPAD 141 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 141 (323)
++|+||||||..... ...+.+...+++|+.++.++++++... ..++||++||.+++.+....
T Consensus 100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--- 176 (280)
T 3nrc_A 100 VWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSY--- 176 (280)
T ss_dssp HCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCTTT---
T ss_pred HcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCCCc---
Confidence 579999999976431 344567789999999999999997542 24699999999766544321
Q ss_pred ccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC
Q 020608 142 KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT 218 (323)
Q Consensus 142 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 218 (323)
..|+.+|.+.+.+++.++.+ .|+++++++||.|.++....... ............+
T Consensus 177 ------------------~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~p-- 235 (280)
T 3nrc_A 177 ------------------NTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISN-FKKMLDYNAMVSP-- 235 (280)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTT-HHHHHHHHHHHST--
T ss_pred ------------------hhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcc-hHHHHHHHHhcCC--
Confidence 34999999999999988876 48999999999999986443221 1222222222221
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+.+++|+|++++.++.... ..|+ +++.++
T Consensus 236 ----~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG 270 (280)
T 3nrc_A 236 ----LKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAG 270 (280)
T ss_dssp ----TCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCC
Confidence 1226789999999999997533 3455 556543
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=188.52 Aligned_cols=215 Identities=23% Similarity=0.169 Sum_probs=156.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHH-----HHHHHhhccCCCCCeEEEEccCCCHhHHHHHh
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDER-----ETAHLKALEGADTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+..+.. ..+..+.+...+.++.++.+|++|.+++++++
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 6778899999999999999999999999999999999875311 11222222222457899999999999988876
Q ss_pred c-------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC----CcCEEEEecccccccCCCCCCC
Q 020608 76 T-------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL----GVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 76 ~-------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
+ ++|++|||||...... +.+.+...+++|+.++.++++++... +.++||++||..+..+...
T Consensus 85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~--- 161 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWL--- 161 (285)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGGS---
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCCC---
Confidence 6 7899999999764322 34567788999999999999998543 4579999999855543210
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCC-ccCCCCCCCCchhHHHHHHHHcCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGT-VMGPVIPPTLNASMLMLLRLLQGCT 216 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~-v~G~~~~~~~~~~~~~~~~~~~g~~ 216 (323)
....|+.||.+.+.+++.++.+ .|+++++++||. +-.+ +.........
T Consensus 162 -----------------~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~-----------~~~~~~~~~~ 213 (285)
T 3sc4_A 162 -----------------RPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA-----------AVQNLLGGDE 213 (285)
T ss_dssp -----------------CSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH-----------HHHHHHTSCC
T ss_pred -----------------CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH-----------HHHhhccccc
Confidence 0144999999999999999887 489999999994 4332 1222222211
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCC-CCccEEE
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPS-ACGRHLC 251 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~-~~~~~~~ 251 (323)
....+..++|+|++++.++.... ..|+.+.
T Consensus 214 -----~~~r~~~pedvA~~~~~l~s~~~~~tG~~i~ 244 (285)
T 3sc4_A 214 -----AMARSRKPEVYADAAYVVLNKPSSYTGNTLL 244 (285)
T ss_dssp -----CCTTCBCTHHHHHHHHHHHTSCTTCCSCEEE
T ss_pred -----cccCCCCHHHHHHHHHHHhCCcccccceEEE
Confidence 11235689999999999998654 3445443
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=186.74 Aligned_cols=217 Identities=19% Similarity=0.158 Sum_probs=158.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||+|+||++++++|+++|++|++++|+.+. ..+..+++. .++.++.+|++|.++++++++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL--LAEAVAALE---AEAIAVVADVSDPKAVEAVFAEALEE 77 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHTCC---SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999987422 122222332 468899999999998887765
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|+||||||...... ..+.+...+++|+.++.++++++...- .++||++||.+++ +...
T Consensus 78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~~----------- 145 (263)
T 2a4k_A 78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAFG----------- 145 (263)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHHH-----------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCCC-----------
Confidence 5799999999754321 334567889999999999999986532 3699999998554 2210
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
...|+.+|...+.+.+.++.+ .|+++++++||.+.++...... ......+....+. ..
T Consensus 146 ----------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~~p~------~~ 206 (263)
T 2a4k_A 146 ----------LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLP---PWAWEQEVGASPL------GR 206 (263)
T ss_dssp ----------HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSC---HHHHHHHHHTSTT------CS
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcC---HHHHHHHHhcCCC------CC
Confidence 134999999999998888766 4899999999999998643211 1122222222211 23
Q ss_pred cccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 226 SVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+.+++|+|++++.++.... ..|+ +++.++
T Consensus 207 ~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdgG 238 (263)
T 2a4k_A 207 AGRPEEVAQAALFLLSEESAYITGQALYVDGG 238 (263)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 6799999999999987542 3455 445443
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-26 Score=189.55 Aligned_cols=212 Identities=20% Similarity=0.159 Sum_probs=155.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHH-CCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLE-RRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+||++|||||+|+||++++++|++ .|+.|++..|+.... ...+.++.+|++|.++++++++
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 69 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS------------AENLKFIKADLTKQQDITNVLDIIKNV 69 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC------------CTTEEEEECCTTCHHHHHHHHHHTTTC
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc------------cccceEEecCcCCHHHHHHHHHHHHhC
Confidence 4789999999999999999999999 789999988875311 2367889999999999988876
Q ss_pred CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhCCc--CEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 77 GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKALGV--KRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++...-. +++|++||..++.+.+..
T Consensus 70 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~------------ 137 (244)
T 4e4y_A 70 SFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKPNS------------ 137 (244)
T ss_dssp CEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCTTB------------
T ss_pred CCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCCCC------------
Confidence 689999999975432 24456788999999999999999866422 489999999666544321
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchh--------HHHHHHHHcCCCCCc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNAS--------MLMLLRLLQGCTDTY 219 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~--------~~~~~~~~~g~~~~~ 219 (323)
..|+.||.+.+.+++.++.+ +|+++++++||.+.+|......... ...........
T Consensus 138 ---------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 204 (244)
T 4e4y_A 138 ---------FAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEF---- 204 (244)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTS----
T ss_pred ---------chhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcC----
Confidence 34999999999999998875 4899999999999987432100000 00111111111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
....+.+++|+|++++.++.... ..|+ +++.+
T Consensus 205 --p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 239 (244)
T 4e4y_A 205 --PLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDG 239 (244)
T ss_dssp --TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCCcCHHHHHHHHHHHhcCccccccCCeEeECC
Confidence 11237799999999999997543 2455 45543
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=187.19 Aligned_cols=216 Identities=17% Similarity=0.075 Sum_probs=154.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+|++|||||+|+||++++++|+++| +.|++..|+..... +..+.+ +.++.++.+|++|.++++++++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~--~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLK--KLKEKY---GDRFFYVVGDITEDSVLKQLVNAAVKGH 76 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHH--HHHHHH---GGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHH--HHHHHh---CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999999985 78888888642221 222222 2478899999999999888765
Q ss_pred -CCCEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+||||||.... ..+.+.+...+++|+.++.++++++ ++.+ +++|++||.+++.+....
T Consensus 77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~~~~-------- 147 (254)
T 3kzv_A 77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMYFSSW-------- 147 (254)
T ss_dssp SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCSSCCS--------
T ss_pred CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccCCCCc--------
Confidence 78999999997432 1244567889999999999999998 4444 799999999665543321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-CccEEEEcCCCccCCCCCCCCc------hhHHHHHHHHcCCCCCc
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-GLDVVVVNPGTVMGPVIPPTLN------ASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~Rp~~v~G~~~~~~~~------~~~~~~~~~~~g~~~~~ 219 (323)
..|+.||.+.+.+.+.++.+. ++++++++||.+.+|....... ........+....+
T Consensus 148 -------------~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 211 (254)
T 3kzv_A 148 -------------GAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKE--- 211 (254)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHT---
T ss_pred -------------chHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHh---
Confidence 349999999999999999886 9999999999999986543211 01111222211111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC---CCccE-EEEc
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS---ACGRH-LCVE 253 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~-~~~~ 253 (323)
...+.+++|+|++++.++.... ..|++ ++.+
T Consensus 212 ---~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg 246 (254)
T 3kzv_A 212 ---NNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYND 246 (254)
T ss_dssp ---TC----CHHHHHHHHHHHHHCCCGGGTTCEEETTC
T ss_pred ---cCCcCCcccHHHHHHHHHhhcccCCCCccEEEecC
Confidence 1226789999999999987553 35554 4443
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=190.27 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=152.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +....+...+.++.++.+|++|.++++++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALE--KAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999998743222 2223333334578899999999998877665
Q ss_pred -CCCEEEEcccCC-cc----CCCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPC-IV----DKVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~-~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||.. .. ....+.+...+++|+.++.++++++.. .+.++||++||..++.+.+..
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 154 (262)
T 1zem_A 83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNM-------- 154 (262)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTB--------
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCC--------
Confidence 789999999975 21 124456788999999999999998743 345799999998766544311
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCC------------CchhHH-HHHH
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPT------------LNASML-MLLR 210 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~------------~~~~~~-~~~~ 210 (323)
..|+.+|.+.+.+.+.++.+ +|+++++++||.+.++..... ...... ....
T Consensus 155 -------------~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (262)
T 1zem_A 155 -------------AAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQ 221 (262)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHH
Confidence 34999999999998888765 489999999999987742110 000000 1111
Q ss_pred HHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 211 LLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 211 ~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+....+ . ..+..++|+|.+++.++...
T Consensus 222 ~~~~~p----~--~r~~~p~dvA~~v~~l~s~~ 248 (262)
T 1zem_A 222 MIGSVP----M--RRYGDINEIPGVVAFLLGDD 248 (262)
T ss_dssp HHHTST----T--SSCBCGGGSHHHHHHHHSGG
T ss_pred HHhcCC----C--CCCcCHHHHHHHHHHHcCch
Confidence 111111 1 12568999999999998753
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=186.37 Aligned_cols=211 Identities=18% Similarity=0.101 Sum_probs=155.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccC--CCHhHHHHHhc---
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDL--LDYDAIAAAVT--- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl--~~~~~~~~~~~--- 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+... ..++.++.+|+ +|.++++++++
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLR--QVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999753322 222222211 23678899999 88888877765
Q ss_pred ----CCCEEEEcccCCcc--C---CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ----GCTGVFHLASPCIV--D---KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+||||||.... + .+.+.+...+++|+.++.++++++ ++.+.++||++||..++.+....
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~----- 162 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANW----- 162 (252)
T ss_dssp HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCTTC-----
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCCCC-----
Confidence 68999999997422 1 134456789999999999999997 44556799999999766554321
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCC--ccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG--LDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.||.+.+.+.+.++.+++ ++++.+.||.+.++.. .......
T Consensus 163 ----------------~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~~-----------~~~~~~~------ 209 (252)
T 3f1l_A 163 ----------------GAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMR-----------ASAFPTE------ 209 (252)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHHH-----------HHHCTTC------
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCchh-----------hhhCCcc------
Confidence 3499999999999999998863 8999999999977531 1111111
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
....+.+++|+|.+++.++.... ..|+ +++.+
T Consensus 210 ~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdg 244 (252)
T 3f1l_A 210 DPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQP 244 (252)
T ss_dssp CGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSC
T ss_pred chhccCCHHHHHHHHHHHcCccccCCCCCEEEeCC
Confidence 01226689999999999987543 3455 55543
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=186.89 Aligned_cols=223 Identities=18% Similarity=0.127 Sum_probs=162.0
Q ss_pred CCCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCHhHHHHHhc--
Q 020608 2 SKEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-GADTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 2 ~~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
++++|++|||||+ |+||++++++|+++|++|+++.|+...... +..+++. ..+.++.++.+|++|.++++++++
T Consensus 17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (267)
T 3gdg_A 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAE-ENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDV 95 (267)
T ss_dssp CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHH-HHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHH-HHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHH
Confidence 4678999999999 999999999999999999999887654311 2222221 114578999999999999887765
Q ss_pred -----CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 -----GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 -----~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+|||+||...... +.+.+...+++|+.++.++++++ ++.+.+++|++||.++..+....
T Consensus 96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~----- 170 (267)
T 3gdg_A 96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQ----- 170 (267)
T ss_dssp HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSSS-----
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCCC-----
Confidence 6799999999764322 44567889999999999999997 44455799999998666543210
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCC--ccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKG--LDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
....|+.+|.+.+.+++.++.+++ ++++.+.||.+.++...... ...........+
T Consensus 171 --------------~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~~~----- 228 (267)
T 3gdg_A 171 --------------EQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFVP---KETQQLWHSMIP----- 228 (267)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGSC---HHHHHHHHTTST-----
T ss_pred --------------CCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhCC---HHHHHHHHhcCC-----
Confidence 114499999999999999998864 79999999999987643221 112222222211
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
...+.+++|+|.+++.++.... ..|+ +++.+
T Consensus 229 -~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdg 262 (267)
T 3gdg_A 229 -MGRDGLAKELKGAYVYFASDASTYTTGADLLIDG 262 (267)
T ss_dssp -TSSCEETHHHHHHHHHHHSTTCTTCCSCEEEEST
T ss_pred -CCCCcCHHHHHhHhheeecCccccccCCEEEECC
Confidence 1236689999999999997543 3455 45543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=190.09 Aligned_cols=217 Identities=18% Similarity=0.117 Sum_probs=159.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+ +.++.++.+|++|.++++++++
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~--~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGK--ALADEL---GNRAEFVSTNVTSEDSVLAAIEAANQLG 102 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHH---CTTEEEEECCTTCHHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHH--HHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999998743222 222233 3478999999999999888775
Q ss_pred CCCEEEEc-ccCCccC---------CCCCchhhhhhHHHHHHHHHHHHHhh----------CCcCEEEEecccccccCCC
Q 020608 77 GCTGVFHL-ASPCIVD---------KVEDPQNQLLNPAVKGTVNVLTAAKA----------LGVKRVVVTSSISSITPSP 136 (323)
Q Consensus 77 ~~d~Vih~-a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~----------~~~~~~v~~SS~~~~~~~~ 136 (323)
++|+|||+ |+..... ...+.+...+++|+.++.++++++.. .+.++||++||..++.+..
T Consensus 103 ~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 182 (281)
T 3ppi_A 103 RLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQI 182 (281)
T ss_dssp EEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCCT
T ss_pred CCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCCC
Confidence 57999999 5443221 12234688999999999999998742 2345999999997765543
Q ss_pred CCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHc
Q 020608 137 KWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQ 213 (323)
Q Consensus 137 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~ 213 (323)
.. ..|+.+|.+.+.+++.++.+. |+++++++||.|.++...... ......+..
T Consensus 183 ~~---------------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~---~~~~~~~~~ 238 (281)
T 3ppi_A 183 GQ---------------------TAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVG---EEALAKFAA 238 (281)
T ss_dssp TC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTC---HHHHHHHHH
T ss_pred CC---------------------cccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhccc---HHHHHHHHh
Confidence 21 349999999999998888774 899999999999887433211 122233333
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCcc-EEEEc
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENPSACGR-HLCVE 253 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~-~~~~~ 253 (323)
..+.. ..+++++|+|++++.++......|+ +++.+
T Consensus 239 ~~~~~-----~~~~~pedvA~~v~~l~s~~~~tG~~i~vdG 274 (281)
T 3ppi_A 239 NIPFP-----KRLGTPDEFADAAAFLLTNGYINGEVMRLDG 274 (281)
T ss_dssp TCCSS-----SSCBCHHHHHHHHHHHHHCSSCCSCEEEEST
T ss_pred cCCCC-----CCCCCHHHHHHHHHHHHcCCCcCCcEEEECC
Confidence 32211 2367999999999999987666676 45543
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-25 Score=191.34 Aligned_cols=219 Identities=16% Similarity=0.082 Sum_probs=157.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEe-cCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCHh-----------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATV-KNLSDERETAHLKALE-GADTRLRLFQIDLLDYD----------- 69 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~----------- 69 (323)
+++|++|||||+|+||++++++|+++|++|++++ |+..... +..+.+. ..+.++.++.+|++|.+
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 121 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEAN--ALSATLNARRPNSAITVQADLSNVATAPVSGADGSA 121 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH--HHHHHHHHHSTTCEEEEECCCSSSCBCC-------C
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH--HHHHHHHhhcCCeEEEEEeeCCCchhcccccccccc
Confidence 5678999999999999999999999999999999 7642222 2222222 12347889999999988
Q ss_pred ------HHHHHhc-------CCCEEEEcccCCccCC----C--------------CCchhhhhhHHHHHHHHHHHHHh--
Q 020608 70 ------AIAAAVT-------GCTGVFHLASPCIVDK----V--------------EDPQNQLLNPAVKGTVNVLTAAK-- 116 (323)
Q Consensus 70 ------~~~~~~~-------~~d~Vih~a~~~~~~~----~--------------~~~~~~~~~~n~~~~~~l~~~~~-- 116 (323)
+++++++ ++|+||||||...... . .+.+...+++|+.++.++++++.
T Consensus 122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~ 201 (328)
T 2qhx_A 122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR 201 (328)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877765 7899999999754321 2 34566789999999999999874
Q ss_pred --hCC------cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEE
Q 020608 117 --ALG------VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVV 185 (323)
Q Consensus 117 --~~~------~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ 185 (323)
+.+ .++||++||..++.+... ...|+.+|.+.+.+.+.++.+. |++++
T Consensus 202 m~~~~~~~~~~~g~IV~isS~~~~~~~~~---------------------~~~Y~asKaal~~l~~~la~el~~~gIrvn 260 (328)
T 2qhx_A 202 VAGTPAKHRGTNYSIINMVDAMTNQPLLG---------------------YTIYTMAKGALEGLTRSAALELAPLQIRVN 260 (328)
T ss_dssp HHHSCGGGSCSCEEEEEECCTTTTSCCTT---------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred HHhcCCcCCCCCcEEEEECchhhccCCCC---------------------cHHHHHHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 334 579999999966554321 1349999999999999988774 89999
Q ss_pred EEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 186 VVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 186 ~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+++||.+.++. .. . ......+....+. + ..+.+++|+|++++.++.... ..|+ +++.++
T Consensus 261 ~v~PG~v~T~~-~~-~---~~~~~~~~~~~p~----~-~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG 322 (328)
T 2qhx_A 261 GVGPGLSVLVD-DM-P---PAVWEGHRSKVPL----Y-QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG 322 (328)
T ss_dssp EEEESSBSCCC-CS-C---HHHHHHHHTTCTT----T-TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEecCcccCCc-cc-c---HHHHHHHHhhCCC----C-CCCCCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 99999999987 22 1 1222233222211 1 136789999999999996432 3455 445443
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=183.38 Aligned_cols=198 Identities=16% Similarity=0.103 Sum_probs=145.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC----CE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC----TG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----d~ 80 (323)
||+||||||+|+||++++++|+++|++|++++|+.+.. .+....+ ..++.++.+|++|.++++++++.+ |+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~--~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~ 75 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKL--STVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSIPST 75 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHH--HHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSCCSE
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHH---hhccCeEeecCCCHHHHHHHHHHHhhcCCE
Confidence 57899999999999999999999999999999974222 2222233 347889999999999999988754 89
Q ss_pred EEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCCCCCChh
Q 020608 81 VFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE 153 (323)
Q Consensus 81 Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~ 153 (323)
|||+||...... ..+.+...+++|+.++.++++++... ...++|++||..++.+....
T Consensus 76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~~--------------- 140 (230)
T 3guy_A 76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKAQE--------------- 140 (230)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCTTC---------------
T ss_pred EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCCCC---------------
Confidence 999999754322 44567889999999999999997543 12399999999766544321
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHH
Q 020608 154 YCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFK 230 (323)
Q Consensus 154 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~ 230 (323)
..|+.+|.+.+.+++.++.++ |++++.++||.+.++...... ... ....+++++
T Consensus 141 ------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-----------~~~------~~~~~~~~~ 197 (230)
T 3guy_A 141 ------STYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSG-----------KSL------DTSSFMSAE 197 (230)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC---------------------------------CCCHH
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhcC-----------CCC------CcccCCCHH
Confidence 349999999999999998885 899999999999887532210 000 112367899
Q ss_pred HHHHHHHHhhcCCCC
Q 020608 231 DVALAHILVYENPSA 245 (323)
Q Consensus 231 D~a~~~~~~~~~~~~ 245 (323)
|+|++++.++..+..
T Consensus 198 dvA~~i~~l~~~~~~ 212 (230)
T 3guy_A 198 DAALMIHGALANIGN 212 (230)
T ss_dssp HHHHHHHHHCCEETT
T ss_pred HHHHHHHHHHhCcCC
Confidence 999999999875543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=187.39 Aligned_cols=218 Identities=19% Similarity=0.154 Sum_probs=155.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+++... +..+.+ .++.++.+|++|.++++++++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGR--ALEQEL----PGAVFILCDVTQEDDVKTLVSETIRRF 80 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHC----TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHh----cCCeEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999998643221 122222 247889999999999888765
Q ss_pred -CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||..... .+.+.+...+++|+.++.++++++... +.+++|++||..+.++....
T Consensus 81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 151 (270)
T 1yde_A 81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQA--------- 151 (270)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTC---------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCCCC---------
Confidence 789999999975321 133457889999999999999997531 24799999998766654321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCC---CCchhHHHHHHHHcCCCCCccC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPP---TLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~---~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+.+.++.+ +|+++++++||.+++|.... ........+.......+ .
T Consensus 152 ------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p----~ 215 (270)
T 1yde_A 152 ------------VPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQP----L 215 (270)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTST----T
T ss_pred ------------cccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCC----C
Confidence 34999999999999998866 58999999999999974210 00001111111111111 1
Q ss_pred cCCCcccHHHHHHHHHHhhcCC-CCCcc-EEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENP-SACGR-HLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~-~~~~~-~~~~~ 253 (323)
..+.+++|+|.+++.++... ...|+ +.+.+
T Consensus 216 --~r~~~p~dva~~v~~L~s~~~~itG~~i~vdG 247 (270)
T 1yde_A 216 --GRMGQPAEVGAAAVFLASEANFCTGIELLVTG 247 (270)
T ss_dssp --SSCBCHHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred --CCCcCHHHHHHHHHHHcccCCCcCCCEEEECC
Confidence 12578999999999988642 23455 55644
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-25 Score=183.14 Aligned_cols=213 Identities=20% Similarity=0.177 Sum_probs=152.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|++|||||+|+||++++++|+++|++|++++|+.++ . .+.+ ++.++.+|++| ++++++++ +
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~--~---~~~~-----~~~~~~~D~~~-~~~~~~~~~~~~~~g~ 70 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE--A---AQSL-----GAVPLPTDLEK-DDPKGLVKRALEALGG 70 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH--H---HHHH-----TCEEEECCTTT-SCHHHHHHHHHHHHTS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--H---HHhh-----CcEEEecCCch-HHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999997532 1 1122 26788999999 76665543 7
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
+|+|||+||...... +.+.+...+++|+.++.++++++. +.+.+++|++||.+++.+... +
T Consensus 71 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-----------~ 139 (239)
T 2ekp_A 71 LHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGP-----------V 139 (239)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-----------S
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCCC-----------C
Confidence 899999999754321 345678899999999999999873 345689999999966553310 0
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
....|+.+|.+.+.+.+.++.+. |++++++|||.+.++..... .........+....+ . ..+
T Consensus 140 --------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~p----~--~~~ 204 (239)
T 2ekp_A 140 --------PIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPL-RQNPELYEPITARIP----M--GRW 204 (239)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-HTCHHHHHHHHTTCT----T--SSC
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhcc-ccCHHHHHHHHhcCC----C--CCC
Confidence 11449999999999999988774 89999999999998853210 000111222222111 1 236
Q ss_pred ccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 227 VHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
.+++|+|++++.++.... ..|+ +++.++
T Consensus 205 ~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 235 (239)
T 2ekp_A 205 ARPEEIARVAAVLCGDEAEYLTGQAVAVDGG 235 (239)
T ss_dssp BCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHcCchhcCCCCCEEEECCC
Confidence 799999999999987532 2455 445443
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=182.54 Aligned_cols=223 Identities=17% Similarity=0.149 Sum_probs=161.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||++++++|+++|++|+++.++.. ....+....+...+.++.++.+|++|.++++++++
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK-EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 83 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCS-HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999998755432 22223333343335578899999999988877654
Q ss_pred -------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCcc
Q 020608 77 -------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 -------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+|||+||...... ..+.+...+++|+.++.++++++... +.+++|++||.+++.+.+..
T Consensus 84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~----- 158 (255)
T 3icc_A 84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDF----- 158 (255)
T ss_dssp HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCTTB-----
T ss_pred cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCCCc-----
Confidence 2899999999754322 34456788999999999999998765 34599999999766544321
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+.++......... ..........+
T Consensus 159 ----------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~-~~~~~~~~~~~---- 217 (255)
T 3icc_A 159 ----------------IAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDP-MMKQYATTISA---- 217 (255)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSH-HHHHHHHHTST----
T ss_pred ----------------chhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccH-HHHHhhhccCC----
Confidence 349999999999999988774 899999999999998654322211 11112122211
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
...+.+++|+|++++.++.... ..|+ +++.++
T Consensus 218 --~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG 252 (255)
T 3icc_A 218 --FNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 252 (255)
T ss_dssp --TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred --cCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCC
Confidence 1236789999999999986432 3455 555443
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=177.26 Aligned_cols=211 Identities=18% Similarity=0.101 Sum_probs=156.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~ 80 (323)
++|++|||||++.||+++++.|+++|++|++.+|+.+.... ....++..+.+|++|+++++++++ ++|+
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~--------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDi 81 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA--------PRHPRIRREELDITDSQRLQRLFEALPRLDV 81 (242)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS--------CCCTTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh--------hhcCCeEEEEecCCCHHHHHHHHHhcCCCCE
Confidence 68999999999999999999999999999999997643221 123578899999999999988876 6899
Q ss_pred EEEcccCCccC--CCCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCCCCCChhhh
Q 020608 81 VFHLASPCIVD--KVEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYC 155 (323)
Q Consensus 81 Vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~ 155 (323)
+|||||..... .+.+.|+..+++|+.++..+.+++... +-+++|++||..+..+.+..
T Consensus 82 LVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~----------------- 144 (242)
T 4b79_A 82 LVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADR----------------- 144 (242)
T ss_dssp EEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCCSSC-----------------
T ss_pred EEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCCCCC-----------------
Confidence 99999975321 245678999999999999999887321 23699999999776654421
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHH
Q 020608 156 RQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDV 232 (323)
Q Consensus 156 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~ 232 (323)
..|+.||.....+.+.++.++ |++++.|.||.+..|....... .......+....|. + .+..++|+
T Consensus 145 ----~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~-~~~~~~~~~~~~Pl----g--R~g~peei 213 (242)
T 4b79_A 145 ----PAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKA-DVEATRRIMQRTPL----A--RWGEAPEV 213 (242)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CC-CHHHHHHHHHTCTT----C--SCBCHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccC-CHHHHHHHHhcCCC----C--CCcCHHHH
Confidence 349999999999999888774 8999999999999986432211 12233333333221 1 14579999
Q ss_pred HHHHHHhhcCCC--CCccEE
Q 020608 233 ALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 233 a~~~~~~~~~~~--~~~~~~ 250 (323)
|.+++.++.... -.|+.+
T Consensus 214 A~~v~fLaSd~a~~iTG~~l 233 (242)
T 4b79_A 214 ASAAAFLCGPGASFVTGAVL 233 (242)
T ss_dssp HHHHHHHTSGGGTTCCSCEE
T ss_pred HHHHHHHhCchhcCccCceE
Confidence 999999986543 245543
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-25 Score=183.47 Aligned_cols=204 Identities=16% Similarity=0.150 Sum_probs=145.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 78 (323)
|++|||||+|+||++++++|+++|++|++++|+.+.. .+..+.+. .++.++.+|++|.++++++++ ++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 75 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERL--QELKDELG---DNLYIAQLDVRNRAAIEEMLASLPAEWCNI 75 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHHC---TTEEEEECCTTCHHHHHHHHHTSCTTTCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 6899999999999999999999999999999864222 12222222 368899999999999998876 67
Q ss_pred CEEEEcccCCc-c----CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 79 TGVFHLASPCI-V----DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 79 d~Vih~a~~~~-~----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
|+||||||... . ..+.+.+...+++|+.++.++++++. +.+.++||++||.++..+...
T Consensus 76 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------------ 143 (248)
T 3asu_A 76 DILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAG------------ 143 (248)
T ss_dssp CEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT------------
T ss_pred CEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCCC------------
Confidence 99999999752 1 12445678899999999999999874 345679999999966544321
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCcc-CCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVM-GPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~-G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
...|+.+|...+.+++.++.+. |+++++++||.+. .|................ . ....
T Consensus 144 ---------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~~~-------~--~~~~ 205 (248)
T 3asu_A 144 ---------GNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKT-------Y--QNTV 205 (248)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-------------------------------C
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHHHHH-------H--hccC
Confidence 1349999999999999988774 8999999999999 564321000000000000 0 0112
Q ss_pred cccHHHHHHHHHHhhcCCC
Q 020608 226 SVHFKDVALAHILVYENPS 244 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~ 244 (323)
+++++|+|++++.++..+.
T Consensus 206 ~~~p~dvA~~v~~l~s~~~ 224 (248)
T 3asu_A 206 ALTPEDVSEAVWWVSTLPA 224 (248)
T ss_dssp CBCHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHhcCCc
Confidence 4689999999999998643
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=185.21 Aligned_cols=206 Identities=17% Similarity=0.207 Sum_probs=145.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC-------C
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG-------C 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~ 78 (323)
|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+... .++.++.+|++|.++++++++. +
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~--~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 98 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQ--ALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLPEEFATL 98 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCCGGGSSC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHhhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999743221 222223221 4688999999999999988764 5
Q ss_pred CEEEEcccCCcc-----CCCCCchhhhhhHHHHHHHHHHHHHh----hCCcC-EEEEecccccccCCCCCCCCccccCCC
Q 020608 79 TGVFHLASPCIV-----DKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVK-RVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 79 d~Vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
|+|||+||.... ..+.+.+...+++|+.++.++++++. +.+.+ +||++||..++.+...
T Consensus 99 D~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~~----------- 167 (272)
T 2nwq_A 99 RGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPG----------- 167 (272)
T ss_dssp CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCCTT-----------
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCCCC-----------
Confidence 999999997532 12345678899999999888887763 44556 9999999966544321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
...|+.+|.+.+.+++.++.+ .|+++++++||.+.++................. . ...
T Consensus 168 ----------~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~-------~--~~~ 228 (272)
T 2nwq_A 168 ----------SHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTY-------A--GAH 228 (272)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------------------CCC
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchHHHHHhh-------c--cCC
Confidence 134999999999999998876 389999999999998853211000000000000 0 112
Q ss_pred cccHHHHHHHHHHhhcCCC
Q 020608 226 SVHFKDVALAHILVYENPS 244 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~ 244 (323)
++.++|+|++++.++..+.
T Consensus 229 ~~~pedvA~~v~~l~s~~~ 247 (272)
T 2nwq_A 229 PIQPEDIAETIFWIMNQPA 247 (272)
T ss_dssp CBCHHHHHHHHHHHHTSCT
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 4789999999999998643
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=181.28 Aligned_cols=219 Identities=19% Similarity=0.130 Sum_probs=160.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 80 (323)
+++|++|||||++.||+++++.|+++|++|++.+|+..+ +. .+.+...+.+..++.+|++|+++++++++ ++|+
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~-~~---~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPD-ET---LDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCH-HH---HHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHH-HH---HHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 689999999999999999999999999999999997542 22 22233335678999999999988887766 6899
Q ss_pred EEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCC-cCEEEEecccccccCCCCCCCCccccCCCCCC
Q 020608 81 VFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALG-VKRVVVTSSISSITPSPKWPADKVKDEDCWTD 151 (323)
Q Consensus 81 Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~ 151 (323)
+|||||..... .+.++|+..+++|+.++..+.+++. +.+ .+++|++||..+..+.+..
T Consensus 83 LVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~------------- 149 (247)
T 4hp8_A 83 LVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRV------------- 149 (247)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSC-------------
T ss_pred EEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCC-------------
Confidence 99999976432 2566789999999999999998852 233 4699999999776654421
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCccc
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVH 228 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 228 (323)
..|+.||.....+.+.++.++ |++++.|.||.+..|..... .........+....| .+ .+..
T Consensus 150 --------~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~-~~~~~~~~~~~~~~P----lg--R~g~ 214 (247)
T 4hp8_A 150 --------PSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEAL-RADAARNKAILERIP----AG--RWGH 214 (247)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-HTSHHHHHHHHTTCT----TS--SCBC
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhc-ccCHHHHHHHHhCCC----CC--CCcC
Confidence 349999999999999888774 89999999999988753210 000111222222222 11 1457
Q ss_pred HHHHHHHHHHhhcCCC--CCccEEEEc
Q 020608 229 FKDVALAHILVYENPS--ACGRHLCVE 253 (323)
Q Consensus 229 v~D~a~~~~~~~~~~~--~~~~~~~~~ 253 (323)
++|+|.+++.|+.... ..|+.+..+
T Consensus 215 peeiA~~v~fLaSd~a~~iTG~~i~VD 241 (247)
T 4hp8_A 215 SEDIAGAAVFLSSAAADYVHGAILNVD 241 (247)
T ss_dssp THHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred HHHHHHHHHHHhCchhcCCcCCeEEEC
Confidence 8999999999987543 245544333
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=184.51 Aligned_cols=188 Identities=15% Similarity=0.152 Sum_probs=143.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
|++|++|||||+|+||++++++|+++|++|++++|+..... ....++.+|++|.++++++++
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 68 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSL 68 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999864321 135677899999988877664
Q ss_pred ---CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 ---GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++... ..+++|++||.+++.+...
T Consensus 69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 139 (236)
T 1ooe_A 69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPS--------- 139 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTT---------
T ss_pred CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCCCC---------
Confidence 789999999975421 123456788999999999999998653 1359999999976654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-----CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-----GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+++.++.+. |+++++++||.+.+|.. .......
T Consensus 140 ------------~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~-----------~~~~~~~------ 190 (236)
T 1ooe_A 140 ------------MIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMN-----------RKWMPNA------ 190 (236)
T ss_dssp ------------BHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHH-----------HHHSTTC------
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcch-----------hhcCCCc------
Confidence 1349999999999999998775 49999999999988631 1111110
Q ss_pred cCCCcccHHHHHHHHHHhh
Q 020608 222 FFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~ 240 (323)
....++.++|+|++++.++
T Consensus 191 ~~~~~~~~~dvA~~i~~~l 209 (236)
T 1ooe_A 191 DHSSWTPLSFISEHLLKWT 209 (236)
T ss_dssp CGGGCBCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHH
Confidence 1123578899999998666
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=183.03 Aligned_cols=211 Identities=16% Similarity=0.106 Sum_probs=148.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC-CHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL-DYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~d~V 81 (323)
+++|+||||||+|+||++++++|+++|++|++++|+. . ..+.+ ....++ +|+. +.+.+.+.+.++|+|
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~---~---~~~~~----~~~~~~-~D~~~~~~~~~~~~~~iD~l 85 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE---E---LLKRS----GHRYVV-CDLRKDLDLLFEKVKEVDIL 85 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---H---HHHHT----CSEEEE-CCTTTCHHHHHHHSCCCSEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH---H---HHHhh----CCeEEE-eeHHHHHHHHHHHhcCCCEE
Confidence 5689999999999999999999999999999999864 1 12222 246667 9993 233333344489999
Q ss_pred EEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCCCChh
Q 020608 82 FHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE 153 (323)
Q Consensus 82 ih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~ 153 (323)
||+||..... ...+.+...+++|+.++.++++++ ++.+.++||++||.+++.+...
T Consensus 86 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------------- 149 (249)
T 1o5i_A 86 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIEN---------------- 149 (249)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------------
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCCCC----------------
Confidence 9999975432 134567889999999988776654 4556689999999966654321
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHH-HHHcCCCCCccCcCCCcccH
Q 020608 154 YCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLL-RLLQGCTDTYENFFMGSVHF 229 (323)
Q Consensus 154 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~i~v 229 (323)
...|+.+|.+.+.+.+.++.+ +|+++++++||.+++|....... .... .+....+ ...++++
T Consensus 150 -----~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~~~p------~~~~~~~ 215 (249)
T 1o5i_A 150 -----LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLS---EEKKKQVESQIP------MRRMAKP 215 (249)
T ss_dssp -----BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSC---HHHHHHHHTTST------TSSCBCH
T ss_pred -----CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccch---hhHHHHHHhcCC------CCCCcCH
Confidence 134999999999999988876 48999999999999986321000 1111 2222211 1237899
Q ss_pred HHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 230 KDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 230 ~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
+|+|++++.++.... ..|+ +++.++
T Consensus 216 ~dvA~~i~~l~s~~~~~~tG~~~~vdgG 243 (249)
T 1o5i_A 216 EEIASVVAFLCSEKASYLTGQTIVVDGG 243 (249)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 999999999987532 2355 556544
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-24 Score=182.58 Aligned_cols=221 Identities=17% Similarity=0.074 Sum_probs=156.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+..... +..... +.++.++.+|++|.++++++++
T Consensus 1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~--~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (281)
T 3zv4_A 1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLR--ELEVAH---GGNAVGVVGDVRSLQDQKRAAERCLA 75 (281)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHT---BTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHH--HHHHHc---CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999998643222 222222 3478999999999998877665
Q ss_pred ---CCCEEEEcccCCccCC-----C----CCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCC
Q 020608 77 ---GCTGVFHLASPCIVDK-----V----EDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPAD 141 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~-----~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~ 141 (323)
++|+||||||...... . .+.+...+++|+.++.++++++... +.+++|++||..++.+....
T Consensus 76 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--- 152 (281)
T 3zv4_A 76 AFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNGGG--- 152 (281)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSSSSC---
T ss_pred hcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCCCCC---
Confidence 6799999999753211 1 1236778999999999999997432 12699999999776554321
Q ss_pred ccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhH-------HHHHHHH
Q 020608 142 KVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASM-------LMLLRLL 212 (323)
Q Consensus 142 ~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~-------~~~~~~~ 212 (323)
..|+.||.+.+.+.+.++.+. .++++.++||.+.++.......... .....+.
T Consensus 153 ------------------~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (281)
T 3zv4_A 153 ------------------PLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLK 214 (281)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHH
T ss_pred ------------------chhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHH
Confidence 349999999999999998775 4999999999999985432110000 0111111
Q ss_pred cCCCCCccCcCCCcccHHHHHHHHHHhhcCCC---CCcc-EEEEc
Q 020608 213 QGCTDTYENFFMGSVHFKDVALAHILVYENPS---ACGR-HLCVE 253 (323)
Q Consensus 213 ~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~-~~~~~ 253 (323)
...+ ...+..++|+|.+++.++..+. ..|+ +++.+
T Consensus 215 ~~~p------~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdG 253 (281)
T 3zv4_A 215 SVLP------IGRMPALEEYTGAYVFFATRGDSLPATGALLNYDG 253 (281)
T ss_dssp HTCT------TSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESS
T ss_pred hcCC------CCCCCCHHHHHHHHHHhhcccccccccCcEEEECC
Confidence 1111 1226689999999999998332 3455 44543
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=187.93 Aligned_cols=209 Identities=20% Similarity=0.131 Sum_probs=134.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHH---HHh--
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIA---AAV-- 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~-- 75 (323)
|++++|++|||||+|+||++++++|++ |++|++++|+... .+...+ ..++.++.+|+++.+..+ +.+
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~---~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (245)
T 3e9n_A 1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEH---LAALAE----IEGVEPIESDIVKEVLEEGGVDKLKN 72 (245)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHH---HHHHHT----STTEEEEECCHHHHHHTSSSCGGGTT
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHH---HHHHHh----hcCCcceecccchHHHHHHHHHHHHh
Confidence 788899999999999999999999987 9999999986422 222222 236889999998875421 122
Q ss_pred -cCCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 76 -TGCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 76 -~~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
.++|+|||+||...... +.+.+...+++|+.++.++++++. +.+ +++|++||..++.+....
T Consensus 73 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~-------- 143 (245)
T 3e9n_A 73 LDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPHPGN-------- 143 (245)
T ss_dssp CSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC----------C--------
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCCCCc--------
Confidence 26899999999764322 234567889999999988888863 333 699999999666543321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.||.+.+.+++.++.+ .|+++++++||.+.++...... ...... .+ .
T Consensus 144 -------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-------~~~~~~----~~--~ 197 (245)
T 3e9n_A 144 -------------TIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLM-------DSQGTN----FR--P 197 (245)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------C--C
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhh-------hhhhcc----cc--c
Confidence 34999999999999998876 4899999999999998543211 000000 11 1
Q ss_pred CCcccHHHHHHHHHHhhcCCCCCccEEEE
Q 020608 224 MGSVHFKDVALAHILVYENPSACGRHLCV 252 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~~~~~~~~ 252 (323)
..+++++|+|++++.+++.+..+..+++.
T Consensus 198 ~~~~~p~dvA~~i~~l~~~~~~~~~~~i~ 226 (245)
T 3e9n_A 198 EIYIEPKEIANAIRFVIDAGETTQITNVD 226 (245)
T ss_dssp GGGSCHHHHHHHHHHHHTSCTTEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHcCCCccceeeeE
Confidence 23789999999999999987766667754
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-25 Score=186.39 Aligned_cols=214 Identities=18% Similarity=0.148 Sum_probs=154.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHH-----HHHHHhhccCCCCCeEEEEccCCCHhHHHHHh
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDER-----ETAHLKALEGADTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
|++++|++|||||+|+||++++++|+++|++|++++|+..+.. ..+....+...+.++.++.+|++|.+++++++
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 81 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAV 81 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence 6788999999999999999999999999999999999865311 11122222222457889999999999888776
Q ss_pred c-------CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCC
Q 020608 76 T-------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 76 ~-------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
+ ++|+||||||..... ...+.+...+++|+.++.++++++. +.+.+++|++||.+++.+...
T Consensus 82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~--- 158 (274)
T 3e03_A 82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWW--- 158 (274)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHHH---
T ss_pred HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCC---
Confidence 5 789999999975432 2345678899999999999999973 345579999999855443100
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCC-ccCCCCCCCCchhHHHHHHHHcCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGT-VMGPVIPPTLNASMLMLLRLLQGCT 216 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~-v~G~~~~~~~~~~~~~~~~~~~g~~ 216 (323)
.....|+.||.+.+.+++.++.+. |+++++++||. +-.+... ...+.+
T Consensus 159 ----------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~~------------~~~~~~ 210 (274)
T 3e03_A 159 ----------------GAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAIN------------MLPGVD 210 (274)
T ss_dssp ----------------HHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------------------CCC
T ss_pred ----------------CCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchhh------------hccccc
Confidence 011449999999999999988774 89999999994 5544321 111111
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCCC--CccEEE
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPSA--CGRHLC 251 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~~~~ 251 (323)
...+..++|+|++++.++..... .|++.+
T Consensus 211 ------~~~~~~pedvA~~v~~l~s~~~~~itG~~i~ 241 (274)
T 3e03_A 211 ------AAACRRPEIMADAAHAVLTREAAGFHGQFLI 241 (274)
T ss_dssp ------GGGSBCTHHHHHHHHHHHTSCCTTCCSCEEE
T ss_pred ------ccccCCHHHHHHHHHHHhCccccccCCeEEE
Confidence 11256899999999999976443 456554
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-24 Score=182.73 Aligned_cols=219 Identities=16% Similarity=0.096 Sum_probs=156.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEe-cCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCHh----------
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATV-KNLSDERETAHLKALE-GADTRLRLFQIDLLDYD---------- 69 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~---------- 69 (323)
++++|++|||||+|+||++++++|+++|++|++++ |+..... +..+.+. ..+.++.++.+|++|.+
T Consensus 6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (291)
T 1e7w_A 6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEAN--ALSATLNARRPNSAITVQADLSNVATAPVSGADGS 83 (291)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH--HHHHHHHHHSTTCEEEEECCCSSSCBCCCC----C
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHH--HHHHHHhhhcCCeeEEEEeecCCcccccccccccc
Confidence 36778999999999999999999999999999999 8643222 2222222 22357899999999998
Q ss_pred -------HHHHHhc-------CCCEEEEcccCCccCC----C--------------CCchhhhhhHHHHHHHHHHHHHh-
Q 020608 70 -------AIAAAVT-------GCTGVFHLASPCIVDK----V--------------EDPQNQLLNPAVKGTVNVLTAAK- 116 (323)
Q Consensus 70 -------~~~~~~~-------~~d~Vih~a~~~~~~~----~--------------~~~~~~~~~~n~~~~~~l~~~~~- 116 (323)
+++++++ ++|+||||||...... . .+.+...+++|+.++.++++++.
T Consensus 84 ~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 163 (291)
T 1e7w_A 84 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 163 (291)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8877765 7899999999754321 2 34567889999999999999874
Q ss_pred ---hCC------cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccE
Q 020608 117 ---ALG------VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDV 184 (323)
Q Consensus 117 ---~~~------~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~ 184 (323)
+.+ .++||++||..++.+.+. ...|+.+|.+.+.+.+.++.+ +|+++
T Consensus 164 ~m~~~~~~~~~~~g~Iv~isS~~~~~~~~~---------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~v 222 (291)
T 1e7w_A 164 RVAGTPAKHRGTNYSIINMVDAMTNQPLLG---------------------YTIYTMAKGALEGLTRSAALELAPLQIRV 222 (291)
T ss_dssp HHHTSCGGGSCSCEEEEEECCTTTTSCCTT---------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred HHHhcCCCCCCCCcEEEEEechhhcCCCCC---------------------CchhHHHHHHHHHHHHHHHHHHHhcCeEE
Confidence 334 479999999966554321 134999999999999988876 38999
Q ss_pred EEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccE-EEEc
Q 020608 185 VVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRH-LCVE 253 (323)
Q Consensus 185 ~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~-~~~~ 253 (323)
++++||.+.++. . .. ......+....+ .+ ..+..++|+|++++.++.... ..|+. ++.+
T Consensus 223 n~v~PG~v~T~~-~--~~--~~~~~~~~~~~p----~~-~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdG 284 (291)
T 1e7w_A 223 NGVGPGLSVLVD-D--MP--PAVWEGHRSKVP----LY-QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDG 284 (291)
T ss_dssp EEEEESSBCCGG-G--SC--HHHHHHHHTTCT----TT-TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred EEEeeCCccCCc-c--CC--HHHHHHHHhhCC----CC-CCCCCHHHHHHHHHHHhCCcccCccCcEEEECC
Confidence 999999998876 3 11 122222222221 11 035689999999999997432 34554 4443
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-25 Score=186.88 Aligned_cols=221 Identities=13% Similarity=0.054 Sum_probs=145.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC----CCE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG----CTG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~d~ 80 (323)
||+||||||+|+||++++++|+++|++|++++|+..+... . +.+|++|.+++++++++ +|+
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~--------------~-~~~Dl~~~~~v~~~~~~~~~~id~ 65 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA--------------D-LSTAEGRKQAIADVLAKCSKGMDG 65 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--------------C-TTSHHHHHHHHHHHHTTCTTCCSE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc--------------c-cccCCCCHHHHHHHHHHhCCCCCE
Confidence 5799999999999999999999999999999997643210 1 57999999999988864 599
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCC-CccccCCC-------
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPA-DKVKDEDC------- 148 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~-~~~~~e~~------- 148 (323)
||||||.... ...+...+++|+.++.++++++. +.+.++||++||.+++......+. .....+.+
T Consensus 66 lv~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (257)
T 1fjh_A 66 LVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAI 142 (257)
T ss_dssp EEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHH
T ss_pred EEECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhh
Confidence 9999997531 34588999999999999999985 445679999999966632210000 00000000
Q ss_pred ----CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 149 ----WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 149 ----~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...+ ....|+.||.+.+.+++.++.+ .|+++++++||.+.++....... .......... +..
T Consensus 143 ~~~~~~~~-----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~----~~~ 211 (257)
T 1fjh_A 143 VEHAGEQG-----GNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ--DPRYGESIAK----FVP 211 (257)
T ss_dssp HHTCCTTH-----HHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------------CCC
T ss_pred hhcccCCC-----CccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhcc--chhHHHHHHh----ccc
Confidence 0101 1145999999999999888766 58999999999999986432100 0001111110 001
Q ss_pred cCCCcccHHHHHHHHHHhhcCC--CCCcc-EEEEcC
Q 020608 222 FFMGSVHFKDVALAHILVYENP--SACGR-HLCVEA 254 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~--~~~~~-~~~~~~ 254 (323)
....+++++|+|++++.++..+ ...|+ +++.++
T Consensus 212 ~~~~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG 247 (257)
T 1fjh_A 212 PMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp STTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ccCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECCC
Confidence 1123789999999999998764 23455 445443
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=183.66 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=150.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
++|+||||||+|+||++++++|+++|++|++++|+..+. .-..+.+|++|.++++++++
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~--------------~~~~~~~d~~d~~~v~~~~~~~~~~~g 86 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPN--------------ADHSFTIKDSGEEEIKSVIEKINSKSI 86 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT--------------SSEEEECSCSSHHHHHHHHHHHHTTTC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc--------------cccceEEEeCCHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999999999986432 12357899999998887765
Q ss_pred CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 77 GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
++|+|||+||..... ...+.+...+++|+.++.++++++...- .++||++||..++.+....
T Consensus 87 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~----------- 155 (251)
T 3orf_A 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTSGM----------- 155 (251)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTB-----------
T ss_pred CCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCCCC-----------
Confidence 469999999975322 1345567889999999999999986542 2489999999776544321
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh-----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|.+.+.+++.++.+ .++++++++||.+.++.. ....... ...
T Consensus 156 ----------~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~-----------~~~~~~~------~~~ 208 (251)
T 3orf_A 156 ----------IAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTN-----------RKYMSDA------NFD 208 (251)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHH-----------HHHCTTS------CGG
T ss_pred ----------chhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcch-----------hhhcccc------ccc
Confidence 34999999999999999887 479999999999987531 1111111 122
Q ss_pred CcccHHHHHHHHHHhhcC---CCCCcc-EEEE
Q 020608 225 GSVHFKDVALAHILVYEN---PSACGR-HLCV 252 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~---~~~~~~-~~~~ 252 (323)
.+++++|+|++++.++.. ....|+ +++.
T Consensus 209 ~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~ 240 (251)
T 3orf_A 209 DWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFE 240 (251)
T ss_dssp GSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEE
T ss_pred ccCCHHHHHHHHHHHhcCccccCCcceEEEEe
Confidence 377899999999999987 333455 5553
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=175.65 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=160.4
Q ss_pred CCCCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhc-
Q 020608 1 MSKEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
|++++|++|||||+| .||.++++.|+++|++|++.+|+....+... +.+.. ...++.++.+|++|+++++++++
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~--~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELE--KLLEQLNQPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHH--HHHGGGTCSSCEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--HHHHhcCCCcEEEEEccCCCHHHHHHHHHH
Confidence 678999999999876 8999999999999999999999764433322 22222 23478899999999998887665
Q ss_pred ------CCCEEEEcccCCccCC--------CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCC
Q 020608 77 ------GCTGVFHLASPCIVDK--------VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
++|++|||||...... ..+.+...+++|+.++..+..++... +-+++|++||.++..+.+..
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~~~~-- 157 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNY-- 157 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCCTTT--
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCcccc--
Confidence 6899999999753211 22345667789999999888887543 23599999999776654421
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD 217 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 217 (323)
..|+.||...+.+.+.++.+ +|++++.|.||.+..|...... ........+....|.
T Consensus 158 -------------------~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~-~~~~~~~~~~~~~Pl 217 (256)
T 4fs3_A 158 -------------------NVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVG-GFNTILKEIKERAPL 217 (256)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT-THHHHHHHHHHHSTT
T ss_pred -------------------hhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhcc-CCHHHHHHHHhcCCC
Confidence 34999999999999988877 4899999999999988654322 122233333332221
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEc
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGRHLCVE 253 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~ 253 (323)
+ .+..++|+|.+++.++.... ..|+.+..+
T Consensus 218 ----~--R~g~peevA~~v~fL~Sd~a~~iTG~~i~VD 249 (256)
T 4fs3_A 218 ----K--RNVDQVEVGKTAAYLLSDLSSGVTGENIHVD 249 (256)
T ss_dssp ----S--SCCCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred ----C--CCcCHHHHHHHHHHHhCchhcCccCCEEEEC
Confidence 1 24579999999999997533 345544333
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=186.63 Aligned_cols=214 Identities=18% Similarity=0.130 Sum_probs=156.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHH-----HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDER-----ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+..+.. .....+.+...+.++.++.+|++|.++++++++
T Consensus 43 l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 122 (346)
T 3kvo_A 43 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK 122 (346)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999875421 112222233334578899999999999888776
Q ss_pred ------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCc
Q 020608 77 ------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.++||++||..++.+...
T Consensus 123 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~~----- 197 (346)
T 3kvo_A 123 AIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWF----- 197 (346)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGGT-----
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCCC-----
Confidence 7899999999764322 34567889999999999999998 4445679999999865543110
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCC-ccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGT-VMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~-v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
.....|+.+|.+.+.+++.++.+. +++++++.||. +..+ .... ..+...
T Consensus 198 --------------~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~-----------~~~~-~~~~~~-- 249 (346)
T 3kvo_A 198 --------------KQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTA-----------AMDM-LGGPGI-- 249 (346)
T ss_dssp --------------SSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCH-----------HHHH-HCC--C--
T ss_pred --------------CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccH-----------HHHh-hccccc--
Confidence 011459999999999999998875 89999999996 4332 1111 111110
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC-CCccEEEE
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS-ACGRHLCV 252 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~-~~~~~~~~ 252 (323)
...+..++|+|++++.++.... ..|++.+.
T Consensus 250 ---~~r~~~pedvA~~v~~L~s~~~~itG~~ivd 280 (346)
T 3kvo_A 250 ---ESQCRKVDIIADAAYSIFQKPKSFTGNFVID 280 (346)
T ss_dssp ---GGGCBCTHHHHHHHHHHHTSCTTCCSCEEEH
T ss_pred ---cccCCCHHHHHHHHHHHHhcCCCCCceEEEC
Confidence 1125688999999999998722 35666543
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=184.37 Aligned_cols=203 Identities=16% Similarity=0.068 Sum_probs=148.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+.+.... ..+.+... ..++.++.+|++|.++++++++
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQK--VVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH--HHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH--HHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999997533221 11222111 2368899999999988887765
Q ss_pred --CCCEEEEc-ccCCccCC---CCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHL-ASPCIVDK---VEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~-a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+|||+ |+....+. +.+.+...+++|+.++.++++++... +.++||++||.+++.+.+.
T Consensus 104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 173 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPM---------- 173 (286)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTT----------
T ss_pred cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCCCC----------
Confidence 78999999 56543221 23456778999999999999987432 2369999999866544321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-----CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-----GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
...|+.||.+.+.+++.++.+. ++++++++||.+.++... ....+ ..
T Consensus 174 -----------~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~-----------~~~~~------~~ 225 (286)
T 1xu9_A 174 -----------VAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAM-----------KAVSG------IV 225 (286)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHH-----------HHSCG------GG
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHH-----------Hhccc------cc
Confidence 1449999999999998887654 899999999999775311 11111 11
Q ss_pred CCCcccHHHHHHHHHHhhcCCCC
Q 020608 223 FMGSVHFKDVALAHILVYENPSA 245 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~~ 245 (323)
...+++++|+|+.++.+++.+..
T Consensus 226 ~~~~~~~~~vA~~i~~~~~~~~~ 248 (286)
T 1xu9_A 226 HMQAAPKEECALEIIKGGALRQE 248 (286)
T ss_dssp GGGCBCHHHHHHHHHHHHHTTCS
T ss_pred cCCCCCHHHHHHHHHHHHhcCCc
Confidence 13367899999999999886543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=178.46 Aligned_cols=201 Identities=16% Similarity=0.117 Sum_probs=149.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccC--CCHhHHHHHhc---
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDL--LDYDAIAAAVT--- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl--~~~~~~~~~~~--- 76 (323)
+++|++|||||+|+||++++++|+++|++|++++|+..... +..+.+... ..+..++.+|+ ++.+++.++++
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~ 89 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLA--EVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE 89 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHH--HHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999753322 222222221 24567777777 88888777654
Q ss_pred ----CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ----GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|+|||+||..... .+.+.+...+++|+.++.++++++ ++.+.+++|++||..+..+....
T Consensus 90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~----- 164 (247)
T 3i1j_A 90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANW----- 164 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCTTC-----
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCCCc-----
Confidence 789999999975321 144567889999999999999998 44556799999998666544321
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.+ .+++++.++||.+.++.. .......
T Consensus 165 ----------------~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~-----------~~~~~~~---- 213 (247)
T 3i1j_A 165 ----------------GAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMR-----------AQAYPDE---- 213 (247)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHHH-----------HHHSTTS----
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCccc-----------hhccccc----
Confidence 34999999999999988876 479999999999977521 1111111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
....+..++|+|.+++.++...
T Consensus 214 --~~~~~~~p~dva~~~~~l~s~~ 235 (247)
T 3i1j_A 214 --NPLNNPAPEDIMPVYLYLMGPD 235 (247)
T ss_dssp --CGGGSCCGGGGTHHHHHHHSGG
T ss_pred --CccCCCCHHHHHHHHHHHhCch
Confidence 1122567899999999998743
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-24 Score=178.88 Aligned_cols=215 Identities=17% Similarity=0.121 Sum_probs=147.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+|++|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+...+.++.++.+|++|.++++++++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLR--VVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDRE 79 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999998743222 2222222223468899999999988776543
Q ss_pred ---CCCEEEEcccC--C--------c-cCCCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCC
Q 020608 77 ---GCTGVFHLASP--C--------I-VDKVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKW 138 (323)
Q Consensus 77 ---~~d~Vih~a~~--~--------~-~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~ 138 (323)
++|+||||||. . . .....+.+...+++|+.++.++.+++. +.+.++||++||.+++.+..
T Consensus 80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 157 (260)
T 2qq5_A 80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMF-- 157 (260)
T ss_dssp HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSCCS--
T ss_pred cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCCCC--
Confidence 57999999942 1 1 112456678899999999988877753 44567999999985543211
Q ss_pred CCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC
Q 020608 139 PADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC 215 (323)
Q Consensus 139 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 215 (323)
...|+.||.+.+.+.+.++.+ +|+++++++||.+.++...................
T Consensus 158 --------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~- 216 (260)
T 2qq5_A 158 --------------------NVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQ- 216 (260)
T ss_dssp --------------------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC------------------
T ss_pred --------------------CCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccccchhHHHH-
Confidence 134999999999999988865 48999999999999986432110000000000000
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
...+. ..+..++|+|++++.++....
T Consensus 217 -~~~~~--~~~~~pe~va~~v~~l~s~~~ 242 (260)
T 2qq5_A 217 -FKSAF--SSAETTELSGKCVVALATDPN 242 (260)
T ss_dssp --------CHHHHHHHHHHHHHHHHTCTT
T ss_pred -HHhhh--ccCCCHHHHHHHHHHHhcCcc
Confidence 00000 013579999999999998653
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-24 Score=177.91 Aligned_cols=216 Identities=19% Similarity=0.172 Sum_probs=154.0
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++++|++|||||++.||++++++|+++|++|++.+|+..+. ..+..++.+|+++.++++++++
T Consensus 7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (261)
T 4h15_A 7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG------------LPEELFVEADLTTKEGCAIVAEATRQ 74 (261)
T ss_dssp CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT------------SCTTTEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC------------CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999975321 1133468899999998887665
Q ss_pred ---CCCEEEEcccCCcc------CCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIV------DKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|++|||||.... ..+.++|...+++|+.++..+.+++ ++.+-+++|++||..+..+.+..
T Consensus 75 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~~----- 149 (261)
T 4h15_A 75 RLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPES----- 149 (261)
T ss_dssp HTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTT-----
T ss_pred HcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCCc-----
Confidence 68999999996432 1245678899999999999998886 33455799999998665543210
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCC---------C--chhHHHHH
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPT---------L--NASMLMLL 209 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~---------~--~~~~~~~~ 209 (323)
...|+.||.+.+.+.+.++.+ +|++++.|.||.+..|..... . ......+.
T Consensus 150 ---------------~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (261)
T 4h15_A 150 ---------------TTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIM 214 (261)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHH
Confidence 134999999999999988877 489999999999987642100 0 00001111
Q ss_pred HHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 210 RLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 210 ~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
..... .|-+ .+..++|+|.+++.++.... ..|+ +.+.++
T Consensus 215 ~~~~~----~Plg--R~g~peevA~~v~fLaS~~a~~itG~~i~VDGG 256 (261)
T 4h15_A 215 DGLGG----IPLG--RPAKPEEVANLIAFLASDRAASITGAEYTIDGG 256 (261)
T ss_dssp HHTTC----CTTS--SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHhcC----CCCC--CCcCHHHHHHHHHHHhCchhcCccCcEEEECCc
Confidence 11111 1111 25689999999999986433 2455 445444
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=180.14 Aligned_cols=199 Identities=14% Similarity=0.110 Sum_probs=149.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 76 (323)
++|++|||||+|+||++++++|+++|++|++++|+..... ....++.+|++|.++++++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 73 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKLLG 73 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999864321 135678899999998887765
Q ss_pred --CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|+||||||..... ...+.+...+++|+.++.++++++... ..++||++||.+++.+....
T Consensus 74 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 144 (241)
T 1dhr_A 74 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGM--------- 144 (241)
T ss_dssp TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTB---------
T ss_pred CCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCCCc---------
Confidence 689999999975421 123456788999999999999998653 12599999999766543211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-----CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-----GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+++.++.+. |+++++++||.+.++.. ....... .
T Consensus 145 ------------~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~-----------~~~~~~~------~ 195 (241)
T 1dhr_A 145 ------------IGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMN-----------RKSMPEA------D 195 (241)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHH-----------HHHSTTS------C
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccc-----------cccCcch------h
Confidence 349999999999999988764 59999999999977531 1110110 1
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCcc-EEEE
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGR-HLCV 252 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~ 252 (323)
...++.++|+|++++.++.... ..|+ +.+.
T Consensus 196 ~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~ 228 (241)
T 1dhr_A 196 FSSWTPLEFLVETFHDWITGNKRPNSGSLIQVV 228 (241)
T ss_dssp GGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEE
T ss_pred hccCCCHHHHHHHHHHHhcCCCcCccceEEEEe
Confidence 1225788999999999997543 2455 4453
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=181.49 Aligned_cols=223 Identities=23% Similarity=0.222 Sum_probs=153.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHH-HHhhc---cCCCCCeEEEEccCCCHhHHHHHhcC--
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETA-HLKAL---EGADTRLRLFQIDLLDYDAIAAAVTG-- 77 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~-- 77 (323)
++|+||||||+|+||++++++|+++|++|+++.|+..+..... ..... .....++.++.+|++|.++++++++.
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence 3689999999999999999999999999988887654433222 12111 11234789999999999999998874
Q ss_pred ---CCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 78 ---CTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 78 ---~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
+|+||||||..... .+.+.+...+++|+.++.++++++ ++.+.++||++||.+++.+...
T Consensus 81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~~--------- 151 (327)
T 1jtv_A 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPF--------- 151 (327)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTT---------
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCCCC---------
Confidence 89999999975332 134567889999999999999996 3445679999999966654321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhH-----------HHHHHHH
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASM-----------LMLLRLL 212 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~-----------~~~~~~~ 212 (323)
...|+.||.+.+.+++.++.+ +|+++++|+||.|.++.......... ..+....
T Consensus 152 ------------~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (327)
T 1jtv_A 152 ------------NDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYL 219 (327)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHH
T ss_pred ------------ChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHH
Confidence 134999999999999998875 58999999999999886432111000 0000000
Q ss_pred cCCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCccEE
Q 020608 213 QGCTDTYENFFMGSVHFKDVALAHILVYENPSACGRHL 250 (323)
Q Consensus 213 ~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~ 250 (323)
.......+ ...++++|+|++++.++..+.....|.
T Consensus 220 ~~~~~~~~---~~~~~pedvA~~i~~l~~~~~~~~~~~ 254 (327)
T 1jtv_A 220 AHSKQVFR---EAAQNPEEVAEVFLTALRAPKPTLRYF 254 (327)
T ss_dssp HHHHHHHH---HHCBCHHHHHHHHHHHHHCSSCCSEEE
T ss_pred HHHHHhhh---hcCCCHHHHHHHHHHHHcCCCCCeEEE
Confidence 00000000 002479999999999998654433444
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-24 Score=179.05 Aligned_cols=212 Identities=16% Similarity=0.069 Sum_probs=150.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHH---CCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLE---RRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
++++|++|||||+|+||++++++|++ +|++|++++|+.+... +..+.+.. .+.++.++.+|++|.++++++++
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLR--QLKEELGAQQPDLKVVLAAADLGTEAGVQRLLS 80 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHH--HHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHH--HHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHH
Confidence 35789999999999999999999999 8999999999753222 22222221 13468899999999998877653
Q ss_pred ---------CCC--EEEEcccCCcc--C-----CCCCchhhhhhHHHHHHHHHHHHHhhC------CcCEEEEecccccc
Q 020608 77 ---------GCT--GVFHLASPCIV--D-----KVEDPQNQLLNPAVKGTVNVLTAAKAL------GVKRVVVTSSISSI 132 (323)
Q Consensus 77 ---------~~d--~Vih~a~~~~~--~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~v~~SS~~~~ 132 (323)
++| +||||||.... . .+.+.+...+++|+.++.++++++... +.++||++||.+++
T Consensus 81 ~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~ 160 (259)
T 1oaa_A 81 AVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL 160 (259)
T ss_dssp HHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT
T ss_pred HHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhc
Confidence 358 99999997532 1 234567889999999999999998542 34689999999666
Q ss_pred cCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-CccEEEEcCCCccCCCCCCCCc--hhHHHHH
Q 020608 133 TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-GLDVVVVNPGTVMGPVIPPTLN--ASMLMLL 209 (323)
Q Consensus 133 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~ 209 (323)
.+.+. ...|+.||.+.+.+.+.++.+. ++++++++||.+.++....... .......
T Consensus 161 ~~~~~---------------------~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~ 219 (259)
T 1oaa_A 161 QPYKG---------------------WGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRS 219 (259)
T ss_dssp SCCTT---------------------CHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHH
T ss_pred CCCCC---------------------ccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHH
Confidence 54321 1349999999999999999886 5999999999997763210000 0000011
Q ss_pred HHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 210 RLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 210 ~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.+... .+ ...+.+++|+|++++.++..
T Consensus 220 ~~~~~----~p--~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 220 KLQKL----KS--DGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HHHHH----HH--TTCSBCHHHHHHHHHHHHHH
T ss_pred HHHHh----hh--cCCcCCHHHHHHHHHHHHhh
Confidence 11100 00 12267899999999999864
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-24 Score=178.07 Aligned_cols=218 Identities=11% Similarity=0.018 Sum_probs=147.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHH----HhcCCCE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAA----AVTGCTG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~----~~~~~d~ 80 (323)
||++|||||+|+||++++++|+++|++|++++|+.+.......+.. .+.++..+ |..+.+.+.+ .+.++|+
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~---~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~ 75 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAE---TYPQLKPM--SEQEPAELIEAVTSAYGQVDV 75 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHH---HCTTSEEC--CCCSHHHHHHHHHHHHSCCCE
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh---cCCcEEEE--CHHHHHHHHHHHHHHhCCCCE
Confidence 5799999999999999999999999999999997654433222211 12244443 5555433222 2347999
Q ss_pred EEEcccCC-ccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCCCCCC
Q 020608 81 VFHLASPC-IVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTD 151 (323)
Q Consensus 81 Vih~a~~~-~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~ 151 (323)
||||||.. ... .+.+.+...+++|+.++.++++++. +.+.++||++||..++.+...
T Consensus 76 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------------- 141 (254)
T 1zmt_A 76 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKE-------------- 141 (254)
T ss_dssp EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTT--------------
T ss_pred EEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCCC--------------
Confidence 99999975 221 1345678899999999999999873 344579999999866554321
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhH-----HHHHHHHcCCCCCccCcC
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASM-----LMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~ 223 (323)
...|+.+|.+.+.+.+.++.+. |+++++++||.++||.......... .....+.... + .
T Consensus 142 -------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~----p--~ 208 (254)
T 1zmt_A 142 -------LSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT----A--L 208 (254)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHS----S--S
T ss_pred -------chHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccC----C--C
Confidence 1349999999999999988764 8999999999998886443221110 1111111111 1 1
Q ss_pred CCcccHHHHHHHHHHhhcCCCC--Ccc-EEEEcC
Q 020608 224 MGSVHFKDVALAHILVYENPSA--CGR-HLCVEA 254 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~~--~~~-~~~~~~ 254 (323)
..+.+++|+|++++.++..... .|+ +++.++
T Consensus 209 ~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG 242 (254)
T 1zmt_A 209 QRLGTQKELGELVAFLASGSCDYLTGQVFWLAGG 242 (254)
T ss_dssp SSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence 1267899999999999976442 455 445443
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-23 Score=185.10 Aligned_cols=216 Identities=17% Similarity=0.071 Sum_probs=154.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||+|+||.+++++|+++|++|++++|+.......+..... +.+++.+|++|.++++++++
T Consensus 211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~-----~~~~~~~Dvtd~~~v~~~~~~~~~~~ 285 (454)
T 3u0b_A 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKV-----GGTALTLDVTADDAVDKITAHVTEHH 285 (454)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHH-----TCEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999998864332222222222 46789999999998887765
Q ss_pred -C-CCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC----CcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -G-CTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL----GVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~-~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
+ +|+||||||..... .+.+.+...+++|+.++.++.+++... +.++||++||.+++.+....
T Consensus 286 g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~g~-------- 357 (454)
T 3u0b_A 286 GGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQ-------- 357 (454)
T ss_dssp TTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCTTC--------
T ss_pred CCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCCCC--------
Confidence 3 89999999976432 245567889999999999999998765 55799999999877765432
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|...+.+++.++.+ .|+++++++||.+.++.............. ... ..
T Consensus 358 -------------~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~---~~~------~l 415 (454)
T 3u0b_A 358 -------------TNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLATREVGR---RLN------SL 415 (454)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------CHHHH---HSB------TT
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhhHHHHH---hhc------cc
Confidence 34999999888888887765 489999999999998864321100000111 100 11
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
..+..++|+|+++..++.... ..|+ +++.+
T Consensus 416 ~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdG 448 (454)
T 3u0b_A 416 FQGGQPVDVAELIAYFASPASNAVTGNTIRVCG 448 (454)
T ss_dssp SSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESS
T ss_pred cCCCCHHHHHHHHHHHhCCccCCCCCcEEEECC
Confidence 124679999999999987433 3455 44544
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=176.06 Aligned_cols=210 Identities=16% Similarity=0.150 Sum_probs=149.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC-CCCeEEEEccCCCH-hHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-DTRLRLFQIDLLDY-DAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~-~~~~~~~~---- 76 (323)
+++|+||||||+|+||++++++|+++|++|++++|+..+. .+..+.+... ..++.++.+|++|. +.++++++
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~--~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKG--HEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999975332 2333333332 34789999999998 77666554
Q ss_pred ---CCCEEEEcccCCcc----------------------------------CCCCCchhhhhhHHHHHHHHHHHHHh---
Q 020608 77 ---GCTGVFHLASPCIV----------------------------------DKVEDPQNQLLNPAVKGTVNVLTAAK--- 116 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~----------------------------------~~~~~~~~~~~~~n~~~~~~l~~~~~--- 116 (323)
++|+||||||.... ....+.+...+++|+.|+.++++++.
T Consensus 88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l 167 (311)
T 3o26_A 88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL 167 (311)
T ss_dssp HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence 78999999997532 11334456779999999999998873
Q ss_pred -hCCcCEEEEecccccccCCCCCCC----------------------------CccccCCCCCChhhhccCCCchHHHHH
Q 020608 117 -ALGVKRVVVTSSISSITPSPKWPA----------------------------DKVKDEDCWTDEEYCRQNEIWYPLSKT 167 (323)
Q Consensus 117 -~~~~~~~v~~SS~~~~~~~~~~~~----------------------------~~~~~e~~~~~~~~~~~~~~~Y~~sK~ 167 (323)
+.+.++||++||..+..+...... .....+..+. .....|+.||.
T Consensus 168 ~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Y~~SK~ 241 (311)
T 3o26_A 168 QLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWP------SFGAAYTTSKA 241 (311)
T ss_dssp TTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCC------SSCHHHHHHHH
T ss_pred ccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCc------ccchhhHHHHH
Confidence 345579999999977654321000 0000011111 11245999999
Q ss_pred HHHHHHHHHHHhC-CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 168 LAEKAAWEFAKEK-GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 168 ~~e~~~~~~~~~~-~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
+.+.+++.++.++ ++++++++||.|.++..... ....+++.++.++.++..+.
T Consensus 242 a~~~~~~~la~e~~~i~v~~v~PG~v~T~~~~~~------------------------~~~~~~~~a~~~~~~~~~~~ 295 (311)
T 3o26_A 242 CLNAYTRVLANKIPKFQVNCVCPGLVKTEMNYGI------------------------GNYTAEEGAEHVVRIALFPD 295 (311)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECCCSBCSGGGTTC------------------------CSBCHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhhcCCceEEEecCCceecCCcCCC------------------------CCCCHHHHHHHHHHHHhCCC
Confidence 9999999999886 79999999999988753211 11367899999998876543
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-23 Score=188.00 Aligned_cols=226 Identities=18% Similarity=0.196 Sum_probs=163.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCE-EEEEecCCCcHH-HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC---
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDER-ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC--- 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--- 78 (323)
.++++|||||+|+||.+++++|+++|++ |++++|+..+.. ..+....+...+.++.++.+|++|.+++.++++.+
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~ 304 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 304 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 4689999999999999999999999995 999999764221 11222233333457899999999999999988765
Q ss_pred ---CEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCC
Q 020608 79 ---TGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTD 151 (323)
Q Consensus 79 ---d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~ 151 (323)
|+|||+||..... .+.+.+...+++|+.|+.++.++++..+.++||++||.+++++....
T Consensus 305 g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~g~------------- 371 (486)
T 2fr1_A 305 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPGL------------- 371 (486)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTTC-------------
T ss_pred CCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCCCC-------------
Confidence 9999999975432 23456678899999999999999988888999999999777765432
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHH
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKD 231 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D 231 (323)
..|+.+|...+.+...+. ..|+++++|+||.+++++..... .... +....+.+++++|
T Consensus 372 --------~~Yaaaka~l~~la~~~~-~~gi~v~~i~pG~~~~~gm~~~~-----~~~~--------~~~~g~~~i~~e~ 429 (486)
T 2fr1_A 372 --------GGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGMAEGP-----VADR--------FRRHGVIEMPPET 429 (486)
T ss_dssp --------TTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC-------------------------CTTTTEECBCHHH
T ss_pred --------HHHHHHHHHHHHHHHHHH-hcCCeEEEEECCeeCCCcccchh-----HHHH--------HHhcCCCCCCHHH
Confidence 349999999998887765 56999999999999887532110 0000 1112234789999
Q ss_pred HHHHHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHH
Q 020608 232 VALAHILVYENPSACGRHLCVEAISHYGDFVAKVAEL 268 (323)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~ 268 (323)
+++++..++..... .+.+.+ +.|..+...+...
T Consensus 430 ~a~~l~~~l~~~~~--~~~v~~--~d~~~~~~~~~~~ 462 (486)
T 2fr1_A 430 ACRALQNALDRAEV--CPIVID--VRWDRFLLAYTAQ 462 (486)
T ss_dssp HHHHHHHHHHTTCS--SCEECE--ECHHHHHHHHTSS
T ss_pred HHHHHHHHHhCCCC--eEEEEe--CCHHHHhhhhccc
Confidence 99999999986543 233322 4567666655443
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=175.72 Aligned_cols=217 Identities=14% Similarity=0.061 Sum_probs=151.7
Q ss_pred CCCceEEEecc--ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGG--SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++|++||||| +|+||++++++|+++|++|++++|+..+. ..+..+.+ +.++.++.+|++|.++++++++
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL-IQRITDRL---PAKAPLLELDVQNEEHLASLAGRVTE 80 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHH-HHHHHTTS---SSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHH-HHHHHHhc---CCCceEEEccCCCHHHHHHHHHHHHH
Confidence 56789999999 99999999999999999999999875221 11222222 3367889999999998888766
Q ss_pred ------CCCEEEEcccCCcc---------CCCCCchhhhhhHHHHHHHHHHHHHhhCC--cCEEEEecccccccCCCCCC
Q 020608 77 ------GCTGVFHLASPCIV---------DKVEDPQNQLLNPAVKGTVNVLTAAKALG--VKRVVVTSSISSITPSPKWP 139 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~v~~SS~~~~~~~~~~~ 139 (323)
++|+||||||.... ..+.+.+...+++|+.++.++++++...- .++||++||.+. ++.+.
T Consensus 81 ~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~-~~~~~-- 157 (269)
T 2h7i_A 81 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS-RAMPA-- 157 (269)
T ss_dssp HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-SCCTT--
T ss_pred HhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc-cccCc--
Confidence 78999999997541 12345677889999999999999986531 259999999743 22211
Q ss_pred CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC-----CchhH----HH
Q 020608 140 ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT-----LNASM----LM 207 (323)
Q Consensus 140 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~-----~~~~~----~~ 207 (323)
...|+.+|.+.+.+.+.++.+. |+++++++||.+.++..... ..... ..
T Consensus 158 -------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 218 (269)
T 2h7i_A 158 -------------------YNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLL 218 (269)
T ss_dssp -------------------THHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHH
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHH
Confidence 1349999999999999888764 89999999999987632100 00000 00
Q ss_pred HHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 208 LLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 208 ~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
........ +.+ +.+..++|+|.+++.++.... ..|+.+
T Consensus 219 ~~~~~~~~----p~~-rr~~~p~dvA~~v~~L~s~~~~~itG~~i 258 (269)
T 2h7i_A 219 EEGWDQRA----PIG-WNMKDATPVAKTVCALLSDWLPATTGDII 258 (269)
T ss_dssp HHHHHHHC----TTC-CCTTCCHHHHHHHHHHHSSSCTTCCSEEE
T ss_pred HHhhhccC----Ccc-cCCCCHHHHHHHHHHHhCchhccCcceEE
Confidence 11111111 111 125678999999999997543 245543
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=175.28 Aligned_cols=211 Identities=15% Similarity=0.081 Sum_probs=147.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC-------CcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHH
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL-------SDERETAHLKALEGADTRLRLFQIDLLDYDAIAA 73 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (323)
|++++|++|||||+|+||++++++|+++|++|++.+|.. +........+.+..... ...+|+++.+++++
T Consensus 5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~---~~~~D~~~~~~~~~ 81 (319)
T 1gz6_A 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG---KAVANYDSVEAGEK 81 (319)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC---EEEEECCCGGGHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC---eEEEeCCCHHHHHH
Confidence 456789999999999999999999999999999976531 12222222223322111 13589999887665
Q ss_pred Hhc-------CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCC
Q 020608 74 AVT-------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKW 138 (323)
Q Consensus 74 ~~~-------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~ 138 (323)
+++ ++|+||||||..... .+.+.+...+++|+.|+.++++++ ++.+.++||++||.++.++....
T Consensus 82 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~~~ 161 (319)
T 1gz6_A 82 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQ 161 (319)
T ss_dssp HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCC
Confidence 543 689999999975432 244567889999999999999887 33456799999998776654321
Q ss_pred CCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC
Q 020608 139 PADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC 215 (323)
Q Consensus 139 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 215 (323)
..|+.||.+.+.+.+.++.+. |+++++++||.+ .+...... ...
T Consensus 162 ---------------------~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~--~~~--------- 208 (319)
T 1gz6_A 162 ---------------------ANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVM--PED--------- 208 (319)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGS--CHH---------
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccC--Chh---------
Confidence 349999999999999988774 899999999987 44321100 000
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC-CCcc-EEEEcC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS-ACGR-HLCVEA 254 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~-~~~~-~~~~~~ 254 (323)
...+++++|+|.+++.++..+. ..|+ |++.+.
T Consensus 209 -------~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG 242 (319)
T 1gz6_A 209 -------LVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG 242 (319)
T ss_dssp -------HHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred -------hhccCCHHHHHHHHHHHhCchhhcCCCEEEECCC
Confidence 0113578999999999987543 2444 555544
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=184.10 Aligned_cols=227 Identities=18% Similarity=0.123 Sum_probs=166.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcH-HHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDE-RETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d 79 (323)
.+++||||||+|+||.+++++|+++|+ +|++++|+..+. ...+....+...+.++.++.+|++|.+++++++++ +|
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld 337 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN 337 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence 468999999999999999999999999 688889875321 12223333444455789999999999999999875 99
Q ss_pred EEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccccCCCCCCCCccccCCCCCChhh
Q 020608 80 GVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEY 154 (323)
Q Consensus 80 ~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~ 154 (323)
+|||+||..... .+.+.+...+++|+.++.++.+++... +.++||++||.+++++....
T Consensus 338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~g~---------------- 401 (511)
T 2z5l_A 338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNAGQ---------------- 401 (511)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCTTB----------------
T ss_pred EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCCCC----------------
Confidence 999999976432 133456778899999999999998776 67899999999777765421
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHH
Q 020608 155 CRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVAL 234 (323)
Q Consensus 155 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~ 234 (323)
..|+.+|...+.+++.+. ..|+++++++||.+.+.+.... ... ..+.. ..+.+++++|+++
T Consensus 402 -----~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm~~~--~~~---~~~~~--------~g~~~l~~e~~a~ 462 (511)
T 2z5l_A 402 -----GAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGGMAAG--AGE---ESLSR--------RGLRAMDPDAAVD 462 (511)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTCCCC--HHH---HHHHH--------HTBCCBCHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCccccc--ccH---HHHHh--------cCCCCCCHHHHHH
Confidence 349999999999988764 5699999999998843332211 111 11111 1134688999999
Q ss_pred HHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHC
Q 020608 235 AHILVYENPSACGRHLCVEAISHYGDFVAKVAELY 269 (323)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~ 269 (323)
++..++..+.. ...+. .+.|..+...+....
T Consensus 463 ~l~~al~~~~~--~v~v~--~~d~~~~~~~~~~~~ 493 (511)
T 2z5l_A 463 ALLGAMGRNDV--CVTVV--DVDWERFAPATNAIR 493 (511)
T ss_dssp HHHHHHHHTCS--EEEEC--CBCHHHHHHHHHHHS
T ss_pred HHHHHHhCCCC--EEEEE--eCCHHHHHhhhcccC
Confidence 99999986533 22232 345777776665544
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=162.98 Aligned_cols=212 Identities=13% Similarity=0.049 Sum_probs=142.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEE-e--cCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHH-HHh---cC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHAT-V--KNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIA-AAV---TG 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~-~~~---~~ 77 (323)
+|++|||||+|+||++++++|+++|++|+++ . |+.+... +....+ .+.... |..+.+.+. ++. .+
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~--~~~~~~----~~~~~~--~~~~v~~~~~~~~~~~g~ 72 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQ--RFESEN----PGTIAL--AEQKPERLVDATLQHGEA 72 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH--HHHHHS----TTEEEC--CCCCGGGHHHHHGGGSSC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHH--HHHHHh----CCCccc--CHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999998 5 8642221 222222 122222 444443332 222 36
Q ss_pred CCEEEEcccCCcc---CC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 78 CTGVFHLASPCIV---DK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 78 ~d~Vih~a~~~~~---~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
+|+|||+||.... .. +.+.+...+++|+.++.++++++. +.+.++||++||..++.+.+..
T Consensus 73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~-------- 144 (244)
T 1zmo_A 73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYN-------- 144 (244)
T ss_dssp EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTC--------
T ss_pred CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCCCc--------
Confidence 8999999997543 11 345677899999999999999874 4556799999999666544321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCC---CCCCchhHHHHHHHHc-CCCCCc
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVI---PPTLNASMLMLLRLLQ-GCTDTY 219 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~---~~~~~~~~~~~~~~~~-g~~~~~ 219 (323)
..|+.+|.+.+.+.+.++.+ +|+++++++||.+.++.. ... . .......... ..+
T Consensus 145 -------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~-~-~~~~~~~~~~~~~p--- 206 (244)
T 1zmo_A 145 -------------PLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDW-E-NNPELRERVDRDVP--- 206 (244)
T ss_dssp -------------TTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHH-H-HCHHHHHHHHHHCT---
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccc-c-chHHHHHHHhcCCC---
Confidence 34999999999999988776 389999999999988753 110 0 0011111111 111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCCC--CccEE-EEc
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPSA--CGRHL-CVE 253 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~~~-~~~ 253 (323)
. ..+..++|+|++++.++..... .|++. +.+
T Consensus 207 -~--~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdg 240 (244)
T 1zmo_A 207 -L--GRLGRPDEMGALITFLASRRAAPIVGQFFAFTG 240 (244)
T ss_dssp -T--CSCBCHHHHHHHHHHHHTTTTGGGTTCEEEEST
T ss_pred -C--CCCcCHHHHHHHHHHHcCccccCccCCEEEeCC
Confidence 1 1267899999999999976432 45544 443
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=169.24 Aligned_cols=227 Identities=10% Similarity=0.021 Sum_probs=147.6
Q ss_pred CCCCCceEEEeccc--cHHHHHHHHHHHHCCCEEEEEecCCCcH--------HHHHHHhhccCCC--CCeEEEEcc----
Q 020608 1 MSKEAEVVCVTGGS--GCIGSWLVSLLLERRYTVHATVKNLSDE--------RETAHLKALEGAD--TRLRLFQID---- 64 (323)
Q Consensus 1 m~~~~~~vlItGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~~~~~--~~~~~~~~D---- 64 (323)
|++++|++|||||+ |+||++++++|+++|++|++++|++... ...+....+.... .....+.+|
T Consensus 4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T 1d7o_A 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred cccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceecc
Confidence 45678999999999 9999999999999999999998642100 0000111111100 012333333
Q ss_pred ----CC----C--------HhHHHHHh-------cCCCEEEEcccCCc------cCCCCCchhhhhhHHHHHHHHHHHHH
Q 020608 65 ----LL----D--------YDAIAAAV-------TGCTGVFHLASPCI------VDKVEDPQNQLLNPAVKGTVNVLTAA 115 (323)
Q Consensus 65 ----l~----~--------~~~~~~~~-------~~~d~Vih~a~~~~------~~~~~~~~~~~~~~n~~~~~~l~~~~ 115 (323)
++ | .+++++++ .++|+||||||... ...+.+.+...+++|+.++.++++++
T Consensus 84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 163 (297)
T 1d7o_A 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence 32 1 33444433 36899999998532 11244567889999999999999998
Q ss_pred hhC--CcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcC
Q 020608 116 KAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNP 189 (323)
Q Consensus 116 ~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp 189 (323)
... ..+++|++||.++..+.+.. ...|+.+|.+.+.+.+.++.+ +|+++++++|
T Consensus 164 ~~~m~~~g~iv~isS~~~~~~~~~~--------------------~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~P 223 (297)
T 1d7o_A 164 LPIMNPGGASISLTYIASERIIPGY--------------------GGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISA 223 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSCCTTC--------------------TTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHHhccCceEEEEeccccccCCCCc--------------------chHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEec
Confidence 654 12699999998666543321 024999999999999888765 5899999999
Q ss_pred CCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCcc-EEEEcC
Q 020608 190 GTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGR-HLCVEA 254 (323)
Q Consensus 190 ~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~-~~~~~~ 254 (323)
|.+.+|...... .............+. ..+.+++|+|++++.++.... ..|+ +++.+.
T Consensus 224 G~v~T~~~~~~~-~~~~~~~~~~~~~p~------~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG 284 (297)
T 1d7o_A 224 GPLGSRAAKAIG-FIDTMIEYSYNNAPI------QKTLTADEVGNAAAFLVSPLASAITGATIYVDNG 284 (297)
T ss_dssp CCCBCCCSSCCS-HHHHHHHHHHHHSSS------CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cccccchhhhcc-ccHHHHHHhhccCCC------CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 999999754321 111222222222111 125689999999999987432 2455 455443
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=177.08 Aligned_cols=207 Identities=21% Similarity=0.139 Sum_probs=155.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHH-HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDER-ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
++++|||||+|+||.+++++|+++|+ +|+++.|+..+.. ..+....+...+.++.++.+|++|.++++++++
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 48999999999999999999999998 7888888643222 223333344445689999999999999999886
Q ss_pred CCCEEEEcccCC-ccC----CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCC
Q 020608 77 GCTGVFHLASPC-IVD----KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTD 151 (323)
Q Consensus 77 ~~d~Vih~a~~~-~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~ 151 (323)
.+|+|||+||.. ... .+.+.+...+++|+.++.++.+++.....++||++||.+++.+....
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~~g~------------- 385 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGSGGQ------------- 385 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTCTTC-------------
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCCCCc-------------
Confidence 369999999976 221 13445678999999999999999988888899999999888766432
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHH
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKD 231 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D 231 (323)
..|+.+|...+.+++.+. ..|+++++|.||.+.+++...... ....+.+. ....+.+++
T Consensus 386 --------~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~~~~~----~~~~l~~~--------g~~~l~pe~ 444 (496)
T 3mje_A 386 --------PGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMATDPE----VHDRLVRQ--------GVLAMEPEH 444 (496)
T ss_dssp --------HHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC----------CHHHHHT--------TEEEECHHH
T ss_pred --------HHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccccChH----HHHHHHhc--------CCCCCCHHH
Confidence 349999999999988765 579999999999998776432111 11111111 122457899
Q ss_pred HHHHHHHhhcCCCC
Q 020608 232 VALAHILVYENPSA 245 (323)
Q Consensus 232 ~a~~~~~~~~~~~~ 245 (323)
.+.++..++.....
T Consensus 445 ~~~~l~~~l~~~~~ 458 (496)
T 3mje_A 445 ALGALDQMLENDDT 458 (496)
T ss_dssp HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCc
Confidence 99999999886543
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-22 Score=173.73 Aligned_cols=178 Identities=16% Similarity=0.113 Sum_probs=127.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC-------EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHH
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY-------TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAA 73 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (323)
|. +.|||+||||+||||++++..|+++|+ +|+++++.+...........+.+. .+.++ +|+++.+++.+
T Consensus 1 m~-~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~--~~~~~-~di~~~~~~~~ 76 (327)
T 1y7t_A 1 MK-APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC--AFPLL-AGLEATDDPKV 76 (327)
T ss_dssp CC-CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--TCTTE-EEEEEESCHHH
T ss_pred CC-CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcc--ccccc-CCeEeccChHH
Confidence 44 346899999999999999999999986 899987753111111111122211 11223 67777667788
Q ss_pred HhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cC-EEEEecccccccCCCCCCCCcccc-CCC-C
Q 020608 74 AVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VK-RVVVTSSISSITPSPKWPADKVKD-EDC-W 149 (323)
Q Consensus 74 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~SS~~~~~~~~~~~~~~~~~-e~~-~ 149 (323)
+++++|+|||+||....+ ..+..+.++.|+.++.++++++++.+ .+ +++++|+.... ..++. |.. .
T Consensus 77 a~~~~D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~--------~~~~~~~~~~~ 146 (327)
T 1y7t_A 77 AFKDADYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT--------NALIAYKNAPG 146 (327)
T ss_dssp HTTTCSEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH--------HHHHHHHTCTT
T ss_pred HhCCCCEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhh--------hHHHHHHHcCC
Confidence 899999999999976442 34567799999999999999999875 55 88888875211 11111 111 1
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
..|. +.|+.+|+..|++...+++.+|++.+++||++||||+..
T Consensus 147 ~~p~------~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 147 LNPR------NFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp SCGG------GEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred CChh------heeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 2222 569999999999999999888999999999999999754
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=165.32 Aligned_cols=229 Identities=13% Similarity=0.046 Sum_probs=124.7
Q ss_pred CCCCCceEEEecc--ccHHHHHHHHHHHHCCCEEEEEecCC--------CcHHHHH------------HHhhccCCCC--
Q 020608 1 MSKEAEVVCVTGG--SGCIGSWLVSLLLERRYTVHATVKNL--------SDERETA------------HLKALEGADT-- 56 (323)
Q Consensus 1 m~~~~~~vlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~--------~~~~~~~------------~~~~~~~~~~-- 56 (323)
|++++|++||||| +|+||++++++|+++|++|++++|++ .+....+ ..+.+...+.
T Consensus 5 ~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (319)
T 2ptg_A 5 VDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDL 84 (319)
T ss_dssp CCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccc
Confidence 3456789999999 89999999999999999999998642 0000000 0111111000
Q ss_pred -CeEEEEccC------------CC--------HhHHHHHhc-------CCCEEEEcccCCc------cCCCCCchhhhhh
Q 020608 57 -RLRLFQIDL------------LD--------YDAIAAAVT-------GCTGVFHLASPCI------VDKVEDPQNQLLN 102 (323)
Q Consensus 57 -~~~~~~~Dl------------~~--------~~~~~~~~~-------~~d~Vih~a~~~~------~~~~~~~~~~~~~ 102 (323)
...++.+|+ +| .++++++++ ++|+||||||... ...+.+.+...++
T Consensus 85 ~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~ 164 (319)
T 2ptg_A 85 VFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVS 164 (319)
T ss_dssp CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHh
Confidence 124444442 22 224444433 7899999998642 1124456788999
Q ss_pred HHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh-
Q 020608 103 PAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE- 179 (323)
Q Consensus 103 ~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~- 179 (323)
+|+.++.++++++... ..++||++||.++..+.+.. ...|+.+|.+.+.+.+.++.+
T Consensus 165 vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~--------------------~~~Y~asKaal~~l~~~la~el 224 (319)
T 2ptg_A 165 SSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVIPGY--------------------GGGMSSAKAALESDCRTLAFEA 224 (319)
T ss_dssp HHTHHHHHHHHHHGGGEEEEEEEEEEEECC--------------------------------------THHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhcCceEEEEeccccccccCcc--------------------chhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999998654 12699999998665443211 024999999999988887765
Q ss_pred ---CCccEEEEcCCCccCCCCCCCCch-hHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 180 ---KGLDVVVVNPGTVMGPVIPPTLNA-SMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 180 ---~~~~~~~~Rp~~v~G~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
+|+++++|+||.|.++........ ................+. ..+..++|+|.+++.++.... ..|+.+.
T Consensus 225 ~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~r~~~peevA~~v~~L~s~~~~~itG~~i~ 300 (319)
T 2ptg_A 225 GRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPL--QKELESDDVGRAALFLLSPLARAVTGATLY 300 (319)
T ss_dssp HHHHCCEEEEEEECCCC---------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEE
T ss_pred ccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCC--CCCCCHHHHHHHHHHHhCcccCCccCCEEE
Confidence 489999999999998753211000 000000000000000111 125689999999999987532 3455443
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=164.36 Aligned_cols=225 Identities=13% Similarity=0.054 Sum_probs=143.1
Q ss_pred CCCCceEEEecc--ccHHHHHHHHHHHHCCCEEEEEecCCC--------cHHHHHHHhhccCCC--CCeEEEEccC----
Q 020608 2 SKEAEVVCVTGG--SGCIGSWLVSLLLERRYTVHATVKNLS--------DERETAHLKALEGAD--TRLRLFQIDL---- 65 (323)
Q Consensus 2 ~~~~~~vlItGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~--------~~~~~~~~~~~~~~~--~~~~~~~~Dl---- 65 (323)
++++|++||||| +|+||++++++|+++|++|++++|++. +....+....+.... ....++.+|+
T Consensus 6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (315)
T 2o2s_A 6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK 85 (315)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence 456789999999 899999999999999999999987521 000111122221100 0123444443
Q ss_pred --------CC--------HhHHHHHhc-------CCCEEEEcccCCc------cCCCCCchhhhhhHHHHHHHHHHHHHh
Q 020608 66 --------LD--------YDAIAAAVT-------GCTGVFHLASPCI------VDKVEDPQNQLLNPAVKGTVNVLTAAK 116 (323)
Q Consensus 66 --------~~--------~~~~~~~~~-------~~d~Vih~a~~~~------~~~~~~~~~~~~~~n~~~~~~l~~~~~ 116 (323)
+| .++++++++ ++|+||||||... ...+.+.+...+++|+.++.++++++.
T Consensus 86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 165 (315)
T 2o2s_A 86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG 165 (315)
T ss_dssp TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 22 334444433 6899999999642 112445678899999999999999986
Q ss_pred hC--CcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCC
Q 020608 117 AL--GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPG 190 (323)
Q Consensus 117 ~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~ 190 (323)
.. ..++||++||.++..+.+... ..|+.||.+.+.+.+.++.+ +|+++++++||
T Consensus 166 ~~m~~~g~Iv~isS~~~~~~~~~~~--------------------~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG 225 (315)
T 2o2s_A 166 PIMNEGGSAVTLSYLAAERVVPGYG--------------------GGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAG 225 (315)
T ss_dssp TTEEEEEEEEEEEEGGGTSCCTTCC--------------------TTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred HHHhcCCEEEEEecccccccCCCcc--------------------HHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecc
Confidence 54 126999999986655433210 24999999999998887765 58999999999
Q ss_pred CccCCCCCCC-----CchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEEE
Q 020608 191 TVMGPVIPPT-----LNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLCV 252 (323)
Q Consensus 191 ~v~G~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~ 252 (323)
.|.++..... ............... +. ..+..++|+|.+++.++.... ..|+++..
T Consensus 226 ~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~----p~--~r~~~pedvA~~v~~L~s~~~~~itG~~i~v 288 (315)
T 2o2s_A 226 PLKSRAASAIGKSGEKSFIDYAIDYSYNNA----PL--RRDLHSDDVGGAALFLLSPLARAVSGVTLYV 288 (315)
T ss_dssp CCCCHHHHHTTCSSSSCHHHHHHHHHHHHS----SS--CCCCCHHHHHHHHHHHTSGGGTTCCSCEEEE
T ss_pred cccchhhhhccccccchhHHHHHHHHhccC----CC--CCCCCHHHHHHHHHHHhCchhccCcCCEEEE
Confidence 9987631100 000011111111111 11 125689999999999987432 35665543
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.2e-21 Score=174.81 Aligned_cols=227 Identities=15% Similarity=0.072 Sum_probs=159.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCE-EEEE-ecCCCc-----------HHHHHHHhhccCCCCCeEEEEccCCCHhH
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYT-VHAT-VKNLSD-----------ERETAHLKALEGADTRLRLFQIDLLDYDA 70 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~-~r~~~~-----------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 70 (323)
+++++|||||+|+||.+++++|+++|++ |+++ +|+..+ ....+....+...+.++.++.+|++|.++
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~ 329 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEA 329 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence 4689999999999999999999999997 5555 776432 11122233333335578999999999999
Q ss_pred HHHHhcC------CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhCC-----cCEEEEecccccccCC
Q 020608 71 IAAAVTG------CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKALG-----VKRVVVTSSISSITPS 135 (323)
Q Consensus 71 ~~~~~~~------~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~v~~SS~~~~~~~ 135 (323)
++++++. +|+|||+||...... +.+.+...+++|+.|+.++.+++.... .++||++||.+++.+.
T Consensus 330 v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g~ 409 (525)
T 3qp9_A 330 AARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGG 409 (525)
T ss_dssp HHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTCC
T ss_pred HHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCCC
Confidence 9998874 699999999764322 345577899999999999999987665 6899999999887765
Q ss_pred CCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC
Q 020608 136 PKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC 215 (323)
Q Consensus 136 ~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 215 (323)
... ..|+.+|...+.++..+. ..|+++++|.||.+-++.... . . ....+.+.
T Consensus 410 ~g~---------------------~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~~tgm~~~-~-~---~~~~~~~~- 461 (525)
T 3qp9_A 410 AGQ---------------------GAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPWEGSRVTE-G-A---TGERLRRL- 461 (525)
T ss_dssp TTC---------------------HHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCBTTSGGGS-S-H---HHHHHHHT-
T ss_pred CCC---------------------HHHHHHHHHHHHHHHHHH-hCCCCEEEEECCccccccccc-h-h---hHHHHHhc-
Confidence 432 349999999998876553 459999999999994433211 1 1 11111111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELY 269 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~ 269 (323)
....+.++++++++..++..+.. .. .-..+.|..+...+....
T Consensus 462 -------g~~~l~pee~a~~l~~~l~~~~~---~v-~v~~~dw~~~~~~~~~~~ 504 (525)
T 3qp9_A 462 -------GLRPLAPATALTALDTALGHGDT---AV-TIADVDWSSFAPGFTTAR 504 (525)
T ss_dssp -------TBCCBCHHHHHHHHHHHHHHTCS---EE-EECCBCHHHHHHHHHSSS
T ss_pred -------CCCCCCHHHHHHHHHHHHhCCCC---eE-EEEeCCHHHHHhhccccC
Confidence 12356799999999999986533 22 222345666666655443
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=173.55 Aligned_cols=198 Identities=18% Similarity=0.104 Sum_probs=138.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEec---------CCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHH
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVK---------NLSDERETAHLKALEGADTRLRLFQIDLLDYDAI 71 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 71 (323)
|++++|++|||||+|+||++++++|+++|++|++++| +..... ...+.+...... ..+|++|.+++
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~--~~~~~i~~~~~~---~~~D~~d~~~~ 89 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAAD--IVVDEIRKAGGE---AVADYNSVIDG 89 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHH--HHHHHHHHTTCC---EEECCCCGGGH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHH--HHHHHHHHhCCe---EEEEeCCHHHH
Confidence 3567899999999999999999999999999999887 222211 222222222222 34799998888
Q ss_pred HHHhc-------CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCC
Q 020608 72 AAAVT-------GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSP 136 (323)
Q Consensus 72 ~~~~~-------~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~ 136 (323)
+++++ ++|+||||||..... .+.+.+...+++|+.|+.++++++ ++.+.++||++||.++.++..
T Consensus 90 ~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~ 169 (613)
T 3oml_A 90 AKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNF 169 (613)
T ss_dssp HHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCT
T ss_pred HHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCC
Confidence 87766 579999999976432 244567889999999999999998 455567999999998777654
Q ss_pred CCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHc
Q 020608 137 KWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQ 213 (323)
Q Consensus 137 ~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~ 213 (323)
.. ..|+.||.+.+.+++.++.+. |++++++.||.+ .+.......
T Consensus 170 ~~---------------------~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~-t~~~~~~~~----------- 216 (613)
T 3oml_A 170 GQ---------------------VNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA-SRMTEGILP----------- 216 (613)
T ss_dssp TC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCCC-----------
T ss_pred CC---------------------hHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC-Chhhhhccc-----------
Confidence 21 349999999999999988774 899999999864 222111110
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
......+.++|+|.+++.++...
T Consensus 217 -------~~~~~~~~pedvA~~v~~L~s~~ 239 (613)
T 3oml_A 217 -------DILFNELKPKLIAPVVAYLCHES 239 (613)
T ss_dssp -------HHHHTTCCGGGTHHHHHHTTSTT
T ss_pred -------hhhhhcCCHHHHHHHHHHhcCCC
Confidence 00112347899999999998764
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-20 Score=159.68 Aligned_cols=172 Identities=9% Similarity=0.025 Sum_probs=123.9
Q ss_pred CceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCc------HHHHHHHhh-cc---CCCCCeEEEEccCCCH--h-
Q 020608 5 AEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSD------ERETAHLKA-LE---GADTRLRLFQIDLLDY--D- 69 (323)
Q Consensus 5 ~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~------~~~~~~~~~-~~---~~~~~~~~~~~Dl~~~--~- 69 (323)
+|++|||||++ +||.+++++|+++|++|++..|++.. .+..+.... .. .....+.++.+|+++. +
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 81 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence 68999999875 99999999999999999987765310 000000011 11 1123467889999877 6
Q ss_pred -----------------HHHHHhc-------CCCEEEEcccCCc--c----CCCCCchhhhhhHHHHHHHHHHHHHhhCC
Q 020608 70 -----------------AIAAAVT-------GCTGVFHLASPCI--V----DKVEDPQNQLLNPAVKGTVNVLTAAKALG 119 (323)
Q Consensus 70 -----------------~~~~~~~-------~~d~Vih~a~~~~--~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 119 (323)
++.++++ ++|++|||||... . ..+.+.+...+++|+.++..+++++...-
T Consensus 82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m 161 (329)
T 3lt0_A 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5555543 6899999999632 1 12455678899999999999999985431
Q ss_pred --cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCCCcc
Q 020608 120 --VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPGTVM 193 (323)
Q Consensus 120 --~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~~v~ 193 (323)
-++||++||.++..+.+... ..|+.||.+.+.+.+.++.+ +|++++++.||.|.
T Consensus 162 ~~~g~Iv~isS~~~~~~~~~~~--------------------~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~ 221 (329)
T 3lt0_A 162 KPQSSIISLTYHASQKVVPGYG--------------------GGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLK 221 (329)
T ss_dssp EEEEEEEEEECGGGTSCCTTCT--------------------TTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_pred hhCCeEEEEeCccccCCCCcch--------------------HHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceee
Confidence 15999999997665543211 14999999999888887665 48999999999998
Q ss_pred CCC
Q 020608 194 GPV 196 (323)
Q Consensus 194 G~~ 196 (323)
.+.
T Consensus 222 T~~ 224 (329)
T 3lt0_A 222 SRA 224 (329)
T ss_dssp CHH
T ss_pred chh
Confidence 864
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-18 Score=159.50 Aligned_cols=203 Identities=18% Similarity=0.083 Sum_probs=141.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccC-CCHhHH-HH---Hhc
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL-LDYDAI-AA---AVT 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~-~~---~~~ 76 (323)
++++|+++||||+++||++++++|+++|++|++.+|... ....+.+.. .+.++..+.+|+ ++.+.+ ++ .+.
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~-~~~~~~i~~---~g~~~~~~~~Dv~~~~~~~~~~~~~~~G 394 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDA-TKTVDEIKA---AGGEAWPDQHDVAKDSEAIIKNVIDKYG 394 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHH---TTCEEEEECCCHHHHHHHHHHHHHHHHS
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccH-HHHHHHHHh---cCCeEEEEEcChHHHHHHHHHHHHHhcC
Confidence 466789999999999999999999999999999876432 222222222 234567778888 554432 22 234
Q ss_pred CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|++|||||..... .+.+.+...+++|+.|+.++.+++. +.+.++||++||.++..+....
T Consensus 395 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~~~---------- 464 (604)
T 2et6_A 395 TIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQ---------- 464 (604)
T ss_dssp CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTB----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCC----------
Confidence 799999999975322 2445788999999999999998873 3445699999999777654321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.||.....+.+.++.+ +|++++.|.||. ..+.... .... ....
T Consensus 465 -----------~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~~-------~~~~-----------~~~~ 514 (604)
T 2et6_A 465 -----------ANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTLS-------IMRE-----------QDKN 514 (604)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC---------------------------CC
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCccccc-------cCch-----------hhcc
Confidence 34999999999998888876 489999999983 4332110 0000 0012
Q ss_pred cccHHHHHHHHHHhhcCCC-CCcc
Q 020608 226 SVHFKDVALAHILVYENPS-ACGR 248 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~-~~~~ 248 (323)
...++|+|.+++.++.... ..|+
T Consensus 515 ~~~pe~vA~~v~~L~s~~~~itG~ 538 (604)
T 2et6_A 515 LYHADQVAPLLVYLGTDDVPVTGE 538 (604)
T ss_dssp SSCGGGTHHHHHHTTSTTCCCCSC
T ss_pred CCCHHHHHHHHHHHhCCccCCCCc
Confidence 3478999999999886533 3444
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=169.05 Aligned_cols=208 Identities=12% Similarity=0.076 Sum_probs=144.8
Q ss_pred CCCCCceEEEeccccH-HHHHHHHHHHHCCCEEEEEe-cCCCcHHHH-HHH-hhccCCCCCeEEEEccCCCHhHHHHHhc
Q 020608 1 MSKEAEVVCVTGGSGC-IGSWLVSLLLERRYTVHATV-KNLSDERET-AHL-KALEGADTRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~-~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
|++++|++|||||+|+ ||.++++.|+++|++|+++. |+....... +.+ ..+...+.++.++.+|++|.++++++++
T Consensus 671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~ 750 (1887)
T 2uv8_A 671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE 750 (1887)
T ss_dssp BCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHH
Confidence 4567899999999999 99999999999999999984 543222111 111 2222224578899999999999887653
Q ss_pred -------------CCCEEEEcccCCccC-C----C--CCchhhhhhHHHHHHHHHHHHHhhC------CcCEEEEecccc
Q 020608 77 -------------GCTGVFHLASPCIVD-K----V--EDPQNQLLNPAVKGTVNVLTAAKAL------GVKRVVVTSSIS 130 (323)
Q Consensus 77 -------------~~d~Vih~a~~~~~~-~----~--~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~v~~SS~~ 130 (323)
++|+||||||..... . . .+.+...+++|+.++..++++++.. +.++||++||..
T Consensus 751 ~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~a 830 (1887)
T 2uv8_A 751 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH 830 (1887)
T ss_dssp HHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCT
T ss_pred HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChH
Confidence 489999999976432 1 2 3457889999999999999987322 225999999986
Q ss_pred cccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHH-HHHHHHhCC--ccEEEEcCCCccC-CCCCCCCchhHH
Q 020608 131 SITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKA-AWEFAKEKG--LDVVVVNPGTVMG-PVIPPTLNASML 206 (323)
Q Consensus 131 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~~--~~~~~~Rp~~v~G-~~~~~~~~~~~~ 206 (323)
+..+. . ..|+.||...+.+ .+.++.+.+ ++++++.||.+.| +..... ....
T Consensus 831 g~~gg--~---------------------~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~-~~~~- 885 (1887)
T 2uv8_A 831 GTFGG--D---------------------GMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-NIIA- 885 (1887)
T ss_dssp TCSSC--B---------------------TTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----C-CTTH-
T ss_pred hccCC--C---------------------chHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccc-hhHH-
Confidence 55441 1 3499999999998 666665543 9999999999984 432211 1111
Q ss_pred HHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 207 MLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 207 ~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
...... + ..+..++|+|.+++.++...
T Consensus 886 ---~~~~~~----p---lr~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 886 ---EGIEKM----G---VRTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp ---HHHHTT----S---CCCEEHHHHHHHHHGGGSHH
T ss_pred ---HHHHhc----C---CCCCCHHHHHHHHHHHhCCC
Confidence 111111 1 12447999999999998754
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-17 Score=164.14 Aligned_cols=208 Identities=12% Similarity=0.062 Sum_probs=145.4
Q ss_pred CCCCCceEEEeccccH-HHHHHHHHHHHCCCEEEEEecCCCcH-HH-HHHH-hhccCCCCCeEEEEccCCCHhHHHHHhc
Q 020608 1 MSKEAEVVCVTGGSGC-IGSWLVSLLLERRYTVHATVKNLSDE-RE-TAHL-KALEGADTRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~~-~~-~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
|++++|++|||||+|+ ||.++++.|+++|++|++++++.... .. .+.+ ..+...+.++.++.+|++|.++++++++
T Consensus 648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~ 727 (1878)
T 2uv9_A 648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVN 727 (1878)
T ss_dssp BCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHH
Confidence 4577899999999999 99999999999999999986443221 11 1111 2233234578899999999999887763
Q ss_pred -----------CCCEEEEcccCCccC-C----C--CCchhhhhhHHHHHHHHHHHHHh--h----CCcCEEEEecccccc
Q 020608 77 -----------GCTGVFHLASPCIVD-K----V--EDPQNQLLNPAVKGTVNVLTAAK--A----LGVKRVVVTSSISSI 132 (323)
Q Consensus 77 -----------~~d~Vih~a~~~~~~-~----~--~~~~~~~~~~n~~~~~~l~~~~~--~----~~~~~~v~~SS~~~~ 132 (323)
.+|+||||||..... . . .+.+...+++|+.++.+++++++ . .+.++||++||.++.
T Consensus 728 ~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~ 807 (1878)
T 2uv9_A 728 YIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGT 807 (1878)
T ss_dssp HHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSS
T ss_pred HHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhc
Confidence 489999999976432 1 1 24578899999999999887732 1 223699999998665
Q ss_pred cCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh-C--CccEEEEcCCCcc-CCCCCCCCchhHHHH
Q 020608 133 TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-K--GLDVVVVNPGTVM-GPVIPPTLNASMLML 208 (323)
Q Consensus 133 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~--~~~~~~~Rp~~v~-G~~~~~~~~~~~~~~ 208 (323)
.+.. ..|+.+|...+.++..+..+ . +++++.+.||.+. ++.... ....
T Consensus 808 ~gg~-----------------------~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~-----~~~~ 859 (1878)
T 2uv9_A 808 FGND-----------------------GLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA-----NNLV 859 (1878)
T ss_dssp SSCC-----------------------SSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH-----HHHT
T ss_pred cCCc-----------------------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc-----chhh
Confidence 4421 34999999999987765443 2 3999999999998 554321 0111
Q ss_pred HHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 209 LRLLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 209 ~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
....... + ..+..++|+|.+++.++...
T Consensus 860 ~~~~~~~----p---lr~~sPeEVA~avlfLaSd~ 887 (1878)
T 2uv9_A 860 AEGVEKL----G---VRTFSQQEMAFNLLGLMAPA 887 (1878)
T ss_dssp HHHHHTT----T---CCCBCHHHHHHHHHHHHSHH
T ss_pred HHHHHhc----C---CCCCCHHHHHHHHHHHhCCc
Confidence 1112211 1 12348999999999988654
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=144.47 Aligned_cols=211 Identities=9% Similarity=-0.052 Sum_probs=141.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHH-CCCEEEEEecCCCcHHH---------HHH-HhhccCCCCCeEEEEccCCCHhHHH
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLE-RRYTVHATVKNLSDERE---------TAH-LKALEGADTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~---------~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~ 72 (323)
.+|++|||||++.||.++++.|++ .|++|++++|+...... ... .+.+...+..+..+.+|++|.++++
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v~ 125 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQ 125 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 468999999999999999999999 99999999887644221 011 1112222456888999999999888
Q ss_pred HHhc-------CCCEEEEcccCCc--------------------------------------cCCCCCchhhhhhHHHHH
Q 020608 73 AAVT-------GCTGVFHLASPCI--------------------------------------VDKVEDPQNQLLNPAVKG 107 (323)
Q Consensus 73 ~~~~-------~~d~Vih~a~~~~--------------------------------------~~~~~~~~~~~~~~n~~~ 107 (323)
++++ ++|++||+||... .+.+.+.+..++++|..+
T Consensus 126 ~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~~ 205 (405)
T 3zu3_A 126 LTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGGE 205 (405)
T ss_dssp HHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhchh
Confidence 7665 6799999998631 112345677888888877
Q ss_pred HH-HHHHHHhhC----CcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---
Q 020608 108 TV-NVLTAAKAL----GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE--- 179 (323)
Q Consensus 108 ~~-~l~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--- 179 (323)
.. .+++++... +-.++|++||.++..+.+.. ....|+.+|...+.+.+.++.+
T Consensus 206 ~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p~~-------------------~~~aY~AaKaal~~ltrsLA~Ela~ 266 (405)
T 3zu3_A 206 DWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDIY-------------------WNGSIGAAKKDLDQKVLAIRESLAA 266 (405)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTTTT-------------------TTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCCCc-------------------cchHHHHHHHHHHHHHHHHHHHhCc
Confidence 75 455554321 12589999998665443321 0134999999999998888766
Q ss_pred C-CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 180 K-GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 180 ~-~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
+ |++++++.||.+..+....... .......+.+ + . +. +-..+|+|.++..|+..
T Consensus 267 ~~GIRVNaVaPG~i~T~~s~~ip~-~p~y~~~l~~--~-m-kr----~G~~Ed~a~~i~~L~sd 321 (405)
T 3zu3_A 267 HGGGDARVSVLKAVVSQASSAIPM-MPLYLSLLFK--V-M-KE----KGTHEGCIEQVYSLYKD 321 (405)
T ss_dssp TTSCEEEEEECCCCCCHHHHTSTT-HHHHHHHHHH--H-H-HH----HTCCCCHHHHHHHHHHH
T ss_pred ccCeEEEEEEeCCCcCchhhcCCC-CcHHHHHHHH--H-H-hc----CCCcHHHHHHHHHHHhc
Confidence 4 8999999999998874322111 1111111111 0 0 00 11348999999988864
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-18 Score=166.05 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=142.8
Q ss_pred CCCCCceEEEeccccH-HHHHHHHHHHHCCCEEEEEe-cCCCcHHH-HHHH-hhccCCCCCeEEEEccCCCHhHHHHHhc
Q 020608 1 MSKEAEVVCVTGGSGC-IGSWLVSLLLERRYTVHATV-KNLSDERE-TAHL-KALEGADTRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~-~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
|++++|++|||||+|+ ||++++++|+++|++|+++. |+...... .+.+ ..+...+.++.++.+|++|.++++++++
T Consensus 472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe 551 (1688)
T 2pff_A 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE 551 (1688)
T ss_dssp CCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHH
T ss_pred cccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 4567889999999998 99999999999999999884 55433221 1111 1112224468899999999998887653
Q ss_pred -------------CCCEEEEcccCCccC-C----C--CCchhhhhhHHHHHHHHHHHHHhh--C----CcCEEEEecccc
Q 020608 77 -------------GCTGVFHLASPCIVD-K----V--EDPQNQLLNPAVKGTVNVLTAAKA--L----GVKRVVVTSSIS 130 (323)
Q Consensus 77 -------------~~d~Vih~a~~~~~~-~----~--~~~~~~~~~~n~~~~~~l~~~~~~--~----~~~~~v~~SS~~ 130 (323)
++|+||||||..... . . .+.+...+++|+.++.+++++++. . +.++||++||.+
T Consensus 552 ~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiA 631 (1688)
T 2pff_A 552 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH 631 (1688)
T ss_dssp HHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCT
T ss_pred HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChH
Confidence 489999999975432 1 1 345688999999999999998732 1 235899999986
Q ss_pred cccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHH-HHHHHHhCC--ccEEEEcCCCccC-CCCCCCCchhHH
Q 020608 131 SITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKA-AWEFAKEKG--LDVVVVNPGTVMG-PVIPPTLNASML 206 (323)
Q Consensus 131 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~~--~~~~~~Rp~~v~G-~~~~~~~~~~~~ 206 (323)
+..+. . ..|+.||.+.+.+ .+.++++.+ ++++.+.||.+.| +......
T Consensus 632 G~~Gg--~---------------------saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~e----- 683 (1688)
T 2pff_A 632 GTFGG--D---------------------GMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANN----- 683 (1688)
T ss_dssp TTSSC--B---------------------TTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTTT-----
T ss_pred hccCC--c---------------------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCch-----
Confidence 55431 1 3499999999998 444444332 8899999999985 4322100
Q ss_pred HHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 207 MLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 207 ~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
........ .+ ..+..++|+|.+++.++...
T Consensus 684 ~~~~~l~~----ip---lR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 684 IIAEGIEK----MG---VRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp TCSTTTSS----SS---CCCCCCCTTHHHHHHHTSTT
T ss_pred HHHHHHHh----CC---CCCCCHHHHHHHHHHHhCCC
Confidence 00000000 11 12447899999999998765
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=146.18 Aligned_cols=211 Identities=12% Similarity=-0.032 Sum_probs=139.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHH-CCCEEEEEecCCCcHHH---------HH-HHhhccCCCCCeEEEEccCCCHhHHH
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLE-RRYTVHATVKNLSDERE---------TA-HLKALEGADTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~---------~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~ 72 (323)
.+|++|||||+++||.++++.|++ .|++|++++|+...... .. ..+.+...+..+..+.+|++|.++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~ 139 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARA 139 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 468999999999999999999999 99999999987654221 00 11122222456888999999998877
Q ss_pred HHh--------cCCCEEEEcccCC-------------cc-------------------------CCCCCchhhhhhHHHH
Q 020608 73 AAV--------TGCTGVFHLASPC-------------IV-------------------------DKVEDPQNQLLNPAVK 106 (323)
Q Consensus 73 ~~~--------~~~d~Vih~a~~~-------------~~-------------------------~~~~~~~~~~~~~n~~ 106 (323)
+++ -++|++|||||.. .. +.+.+.+...+++|..
T Consensus 140 ~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~ 219 (422)
T 3s8m_A 140 QVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGG 219 (422)
T ss_dssp HHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhch
Confidence 654 3579999999862 10 1133455667777766
Q ss_pred HHH-HHHHHHhhCC----cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh--
Q 020608 107 GTV-NVLTAAKALG----VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-- 179 (323)
Q Consensus 107 ~~~-~l~~~~~~~~----~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-- 179 (323)
+.. .++.++.... ..++|++||.++..+.+. + ....|+.||...+.+.+.++.+
T Consensus 220 ~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p~----------------~---~~~aY~ASKaAl~~lTrsLA~Ela 280 (422)
T 3s8m_A 220 QDWELWIDALEGAGVLADGARSVAFSYIGTEITWPI----------------Y---WHGALGKAKVDLDRTAQRLNARLA 280 (422)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHHH----------------H---TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCCC----------------c---cchHHHHHHHHHHHHHHHHHHHhC
Confidence 664 5566553321 258999999855433211 0 0134999999999999888877
Q ss_pred -CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 180 -KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 180 -~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
+|++++++.||.|..|....... .........+ + . +. +-..+|+|.++..++..
T Consensus 281 ~~GIRVNaVaPG~i~T~~~~~ip~-~~~~~~~~~~--~-m-~r----~G~pEdva~~v~~L~sd 335 (422)
T 3s8m_A 281 KHGGGANVAVLKSVVTQASAAIPV-MPLYISMVYK--I-M-KE----KGLHEGTIEQLDRLFRE 335 (422)
T ss_dssp TTTCEEEEEEECCCCCTTGGGSTH-HHHHHHHHHH--H-H-HH----TTCCCCHHHHHHHHHHH
T ss_pred ccCEEEEEEEcCCCcChhhhcCCC-ChHHHHHHHh--h-h-cC----CcChHHHHHHHHHHhcc
Confidence 48999999999999986432211 1111111100 0 0 00 11348999999988854
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=160.79 Aligned_cols=208 Identities=20% Similarity=0.176 Sum_probs=152.2
Q ss_pred CCceEEEeccccHHHHHHHHHHH-HCCC-EEEEEecCCCcHH-HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLL-ERRY-TVHATVKNLSDER-ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~-~~g~-~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++++|||||+|.||..+++.|+ ++|+ +|++++|+..+.+ ..+..+++...+.++.++.+|++|.++++++++
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~ 608 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD 608 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 46899999999999999999999 7898 5888899743222 223334444445678999999999999998876
Q ss_pred --CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 77 --GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
.+|+||||||..... .+.+.+...+++|+.|+.++.+++... . +||++||.++..+....
T Consensus 609 ~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~-l-~iV~~SS~ag~~g~~g~------------ 674 (795)
T 3slk_A 609 EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD-V-ALVLFSSVSGVLGSGGQ------------ 674 (795)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT-S-EEEEEEETHHHHTCSSC------------
T ss_pred hCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC-C-EEEEEccHHhcCCCCCC------------
Confidence 369999999975332 245678899999999999999998433 3 99999999888776542
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHH
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFK 230 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~ 230 (323)
..|+.+|...+.+....+ ..|+++++|.||.+-+++.... ........+.+. .+..+..+
T Consensus 675 ---------~~YaAaka~~~alA~~~~-~~Gi~v~sI~pG~v~t~g~~~~--~~~~~~~~~~~~--------g~~~l~~~ 734 (795)
T 3slk_A 675 ---------GNYAAANSFLDALAQQRQ-SRGLPTRSLAWGPWAEHGMAST--LREAEQDRLARS--------GLLPISTE 734 (795)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH-HTTCCEEEEEECCCSCCCHHHH--HHHHHHHHHHHT--------TBCCCCHH
T ss_pred ---------HHHHHHHHHHHHHHHHHH-HcCCeEEEEECCeECcchhhcc--ccHHHHHHHHhc--------CCCCCCHH
Confidence 349999998888887765 5699999999999876642110 000111111111 12246788
Q ss_pred HHHHHHHHhhcCCCC
Q 020608 231 DVALAHILVYENPSA 245 (323)
Q Consensus 231 D~a~~~~~~~~~~~~ 245 (323)
+....+..++.....
T Consensus 735 e~~~~~~~~l~~~~~ 749 (795)
T 3slk_A 735 EGLSQFDAACGGAHT 749 (795)
T ss_dssp HHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999888876543
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=154.38 Aligned_cols=199 Identities=14% Similarity=0.041 Sum_probs=134.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC-------cHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-------DERETAHLKALEGADTRLRLFQIDLLDYDAIAAA 74 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (323)
++++|+++||||++.||++++++|+++|++|++.+|+.. .....+..+++...+.... +|++|.++.+++
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~---~d~~d~~~~~~~ 81 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAV---ADYNNVLDGDKI 81 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEE---EECCCTTCHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEE---EEcCCHHHHHHH
Confidence 467799999999999999999999999999999877541 0111122223322222232 455555433332
Q ss_pred -------hcCCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCC
Q 020608 75 -------VTGCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWP 139 (323)
Q Consensus 75 -------~~~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~ 139 (323)
+.++|++|||||..... .+.+.+...+++|+.|+..+++++. +.+.++||++||.++..+....
T Consensus 82 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~~~- 160 (604)
T 2et6_A 82 VETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQ- 160 (604)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTB-
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCCc-
Confidence 34789999999975322 2445688999999999999998873 3344699999999777665421
Q ss_pred CCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC
Q 020608 140 ADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT 216 (323)
Q Consensus 140 ~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~ 216 (323)
..|+.||.....+.+.++.+ +|++++.|.|+ +..+. .. ...
T Consensus 161 --------------------~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~m-----------~~----~~~ 204 (604)
T 2et6_A 161 --------------------ANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSRM-----------TE----SIM 204 (604)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCHH-----------HH----TTS
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCcc-----------cc----ccC
Confidence 34999999999999988876 48999999996 32211 00 000
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+........++|+|.+++.++...
T Consensus 205 ---~~~~~~~~~pe~vA~~v~~L~s~~ 228 (604)
T 2et6_A 205 ---PPPMLEKLGPEKVAPLVLYLSSAE 228 (604)
T ss_dssp ---CHHHHTTCSHHHHHHHHHHHTSSS
T ss_pred ---ChhhhccCCHHHHHHHHHHHhCCc
Confidence 000011347899999999998754
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=140.68 Aligned_cols=216 Identities=8% Similarity=-0.035 Sum_probs=140.8
Q ss_pred CCceEEEeccccHHHHH--HHHHHHHCCCEEEEEecCCCcHHH---------HHHHh-hccCCCCCeEEEEccCCCHhHH
Q 020608 4 EAEVVCVTGGSGCIGSW--LVSLLLERRYTVHATVKNLSDERE---------TAHLK-ALEGADTRLRLFQIDLLDYDAI 71 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~~---------~~~~~-~~~~~~~~~~~~~~Dl~~~~~~ 71 (323)
.+|++|||||++.||.+ +++.|+++|++|+++.|+...... .+.+. .....+..+.++.+|++|.+++
T Consensus 59 ~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~v 138 (418)
T 4eue_A 59 GPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNETK 138 (418)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHHH
Confidence 57899999999999999 999999999999999987643210 11111 1122245788999999999988
Q ss_pred HHHhc-------CCCEEEEcccCCc-------------c-------------------------CCCCCchhhhhhHHHH
Q 020608 72 AAAVT-------GCTGVFHLASPCI-------------V-------------------------DKVEDPQNQLLNPAVK 106 (323)
Q Consensus 72 ~~~~~-------~~d~Vih~a~~~~-------------~-------------------------~~~~~~~~~~~~~n~~ 106 (323)
+++++ ++|++|||||... . +.+.+.+...+++|..
T Consensus 139 ~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~~ 218 (418)
T 4eue_A 139 DKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMGG 218 (418)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhhH
Confidence 87665 5799999998730 0 1133345566666666
Q ss_pred HHH-HHHHHHhhCC----cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh--
Q 020608 107 GTV-NVLTAAKALG----VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-- 179 (323)
Q Consensus 107 ~~~-~l~~~~~~~~----~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-- 179 (323)
+.. .++.++.... ..++|++||.++..+.+.. ....|+.+|.+.+.+.+.++.+
T Consensus 219 ~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p~~-------------------~~~aY~ASKaAL~~ltrsLA~ELa 279 (418)
T 4eue_A 219 EDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYKIY-------------------REGTIGIAKKDLEDKAKLINEKLN 279 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTTTT-------------------TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCCcc-------------------ccHHHHHHHHHHHHHHHHHHHHhC
Confidence 554 4555543322 2589999998655443321 0134999999999888887765
Q ss_pred --CCccEEEEcCCCccCCCCCCCCchhH--HHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCccE
Q 020608 180 --KGLDVVVVNPGTVMGPVIPPTLNASM--LMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACGRH 249 (323)
Q Consensus 180 --~~~~~~~~Rp~~v~G~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~ 249 (323)
+|++++++.||.|..+.......... ..+.+..+.. -..+|+++++..++...-.+|.+
T Consensus 280 ~~~GIrVN~V~PG~v~T~~s~~ip~~p~y~~~~~~~mk~~-----------G~~E~v~e~~~~L~sd~~~~g~~ 342 (418)
T 4eue_A 280 RVIGGRAFVSVNKALVTKASAYIPTFPLYAAILYKVMKEK-----------NIHENCIMQIERMFSEKIYSNEK 342 (418)
T ss_dssp HHHSCEEEEEECCCCCCHHHHTSTTHHHHHHHHHHHHHHT-----------TCCCCHHHHHHHHHHHTTSSSSC
T ss_pred CccCeEEEEEECCcCcChhhhcCCCCcHHHHHHHHHHhhc-----------CChHHHHHHHHHHhhccccCCCc
Confidence 57999999999998874322111111 1111111110 12489999999888754333443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-13 Score=142.88 Aligned_cols=229 Identities=16% Similarity=0.112 Sum_probs=145.7
Q ss_pred CCCceEEEeccccH-HHHHHHHHHHHCCCEEEEEecCCCcHH---HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--
Q 020608 3 KEAEVVCVTGGSGC-IGSWLVSLLLERRYTVHATVKNLSDER---ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
+++|++|||||+++ ||.++++.|++.|++|++.+|+.+... ..+..+.+...+.++..+.+|++|.++++++++
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence 57899999999999 999999999999999999999865411 112223333334567889999999998887643
Q ss_pred ---------CCCEEEEcccC----Ccc-----CCCCCchhhh----hhHHHHHHHHHHHHHhh----CCcC---EEE-Ee
Q 020608 77 ---------GCTGVFHLASP----CIV-----DKVEDPQNQL----LNPAVKGTVNVLTAAKA----LGVK---RVV-VT 126 (323)
Q Consensus 77 ---------~~d~Vih~a~~----~~~-----~~~~~~~~~~----~~~n~~~~~~l~~~~~~----~~~~---~~v-~~ 126 (323)
++|++|||||. ... .....++... +++|+.++..++.++.. .+.. .++ ..
T Consensus 2214 ~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~ 2293 (3089)
T 3zen_D 2214 GTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPG 2293 (3089)
T ss_dssp TSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred HhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEC
Confidence 47999999997 111 1122334434 88899999888887633 2211 222 22
Q ss_pred cccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh--C--CccEEEEcCCCccCCCCCCCCc
Q 020608 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE--K--GLDVVVVNPGTVMGPVIPPTLN 202 (323)
Q Consensus 127 SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~--~~~~~~~Rp~~v~G~~~~~~~~ 202 (323)
|+.....+ . ...|+.||.+.+.+.+.++.+ . ++.++.+.||.+-+........
T Consensus 2294 ss~~g~~g--~---------------------~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~ 2350 (3089)
T 3zen_D 2294 SPNRGMFG--G---------------------DGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQND 2350 (3089)
T ss_dssp CSSTTSCS--S---------------------CSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTT
T ss_pred CcccccCC--C---------------------chHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccch
Confidence 22211111 0 034999999999999999988 3 6889999999998543221111
Q ss_pred hhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCC---Ccc-EE--EEcC----ccCHHHHHHHH
Q 020608 203 ASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSA---CGR-HL--CVEA----ISHYGDFVAKV 265 (323)
Q Consensus 203 ~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~---~~~-~~--~~~~----~~~~~e~~~~i 265 (323)
... ...... + .....++|+|.+++.++..... .+. .. ++|. ...+.++...+
T Consensus 2351 ~~~----~~~~~~----~---~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~ 2412 (3089)
T 3zen_D 2351 AIV----SAVEEA----G---VTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKA 2412 (3089)
T ss_dssp TTH----HHHGGG----S---CBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHH
T ss_pred hHH----HHHHhc----C---CCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHH
Confidence 111 111111 1 1123789999999999874321 222 22 2232 24677777654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-14 Score=149.60 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=122.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCE-EEEEecCCCcHHH-HHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERE-TAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+|+++||||+|.||.++++.|+++|++ |++++|+..+... .+..+.+...+.++.++.+|++|.++++++++
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 4688999999999999999999999996 7778887654322 22333333334578889999999998887664
Q ss_pred -CCCEEEEcccCCcc----CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 77 -GCTGVFHLASPCIV----DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 77 -~~d~Vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
.+|+|||+||.... ..+.+.+...+++|+.|+.++.+++... ..++||++||.++..+....
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~g~----------- 2031 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAGQ----------- 2031 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCTTC-----------
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCCCc-----------
Confidence 57999999997532 1256778899999999999998887543 24699999999777665431
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMG 194 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G 194 (323)
..|+.+|...+.+++... ..|++...+-.+.+-+
T Consensus 2032 ----------~~Y~aaKaal~~l~~~rr-~~Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2032 ----------ANYGFANSAMERICEKRR-HDGLPGLAVQWGAIGD 2065 (2512)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH-HTTSCCCEEEECCBCT
T ss_pred ----------HHHHHHHHHHHHHHHHHH-HCCCcEEEEEccCcCC
Confidence 349999999999998665 4588888888776543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=95.30 Aligned_cols=96 Identities=28% Similarity=0.311 Sum_probs=76.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
.++|+|+|+|+ |++|+.+++.|++.| ++|++++|++.. .+.+. ..++.++.+|+++.+.+.++++++|+|
T Consensus 3 ~~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~---~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~d~v 73 (118)
T 3ic5_A 3 AMRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAA---LAVLN-----RMGVATKQVDAKDEAGLAKALGGFDAV 73 (118)
T ss_dssp TTCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHH---HHHHH-----TTTCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred CCcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHH---HHHHH-----hCCCcEEEecCCCHHHHHHHHcCCCEE
Confidence 46789999999 999999999999999 999999986422 22222 236788899999999999999999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEE
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 125 (323)
||+++.. ...++++++.+.+++.+.+
T Consensus 74 i~~~~~~------------------~~~~~~~~~~~~g~~~~~~ 99 (118)
T 3ic5_A 74 ISAAPFF------------------LTPIIAKAAKAAGAHYFDL 99 (118)
T ss_dssp EECSCGG------------------GHHHHHHHHHHTTCEEECC
T ss_pred EECCCch------------------hhHHHHHHHHHhCCCEEEe
Confidence 9998531 1356888888888755443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-13 Score=116.43 Aligned_cols=179 Identities=13% Similarity=0.062 Sum_probs=116.0
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC-------EEEEEecCCCc-HHHH-HHHhhccCCCCCeEEEEccCCCHhHH
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY-------TVHATVKNLSD-ERET-AHLKALEGADTRLRLFQIDLLDYDAI 71 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~-~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~ 71 (323)
|+.+.|||+||||+||||++++..|+..|. +|++++++.+. .... .....+.+....+ ..|++...++
T Consensus 1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~---~~~i~~~~~~ 77 (329)
T 1b8p_A 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL---LAGMTAHADP 77 (329)
T ss_dssp --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT---EEEEEEESSH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc---cCcEEEecCc
Confidence 654568999999999999999999999885 78888765100 1111 1112222211111 2455555567
Q ss_pred HHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cC-EEEEecccccccCCCCCCCCccccCCCC
Q 020608 72 AAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VK-RVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 72 ~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
.++++++|+|||+|+.... ......+.+..|+..++++++++.+++ .+ +||++|.-...... ...+..+
T Consensus 78 ~~al~~aD~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~-------~~~~~~~ 148 (329)
T 1b8p_A 78 MTAFKDADVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAY-------IAMKSAP 148 (329)
T ss_dssp HHHTTTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH-------HHHHTCT
T ss_pred HHHhCCCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHH-------HHHHHcC
Confidence 8889999999999996432 223345688999999999999998884 55 89999874211000 0000000
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPV 196 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~ 196 (323)
. ++ +...++.+++...++...+++..|++...++...|+|.+
T Consensus 149 ~---~p--~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 149 S---LP--AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH 190 (329)
T ss_dssp T---SC--GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS
T ss_pred C---CC--HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEecc
Confidence 0 00 013488888888888888888888887778877788854
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-11 Score=102.63 Aligned_cols=118 Identities=16% Similarity=0.060 Sum_probs=83.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++|||+||||+||+|+.++..|+++| ++|+++++++. . .....+........ +.+ +.+..++.++++++|+|
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~---~~~~dL~~~~~~~~-v~~-~~~t~d~~~al~gaDvV 80 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-P---GVTADISHMDTGAV-VRG-FLGQQQLEAALTGMDLI 80 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-H---HHHHHHHTSCSSCE-EEE-EESHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-H---hHHHHhhcccccce-EEE-EeCCCCHHHHcCCCCEE
Confidence 45799999999999999999999998 79999887653 1 11111221111111 112 33456778889999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
||+|+....+ .......+..|+.+++++++++.+.+.+.+|+++|.
T Consensus 81 i~~ag~~~~~--g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 81 IVPAGVPRKP--GMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp EECCCCCCCS--SCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred EEcCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 9999864322 122345789999999999999999887777777764
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9e-10 Score=95.63 Aligned_cols=175 Identities=13% Similarity=-0.010 Sum_probs=109.9
Q ss_pred CCceEEEeccccHHHHHHHHHHH-HCCCEEEEEecCCCcHHH----------HHHHhhccCCCCCeEEEEccCCCHhHHH
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLL-ERRYTVHATVKNLSDERE----------TAHLKALEGADTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~----------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 72 (323)
..|++|||||+..||.+.+..|+ ..|..|+++.|.....+. ....+.....+.....+.+|+.+.+.++
T Consensus 49 ~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i~ 128 (401)
T 4ggo_A 49 APKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIKA 128 (401)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHHH
Confidence 46899999999999999999998 579999999876543211 1111222333567889999999999988
Q ss_pred HHhc-------CCCEEEEcccCCccCCC---------CCch---------------------hhhhhHHHHHHHHH----
Q 020608 73 AAVT-------GCTGVFHLASPCIVDKV---------EDPQ---------------------NQLLNPAVKGTVNV---- 111 (323)
Q Consensus 73 ~~~~-------~~d~Vih~a~~~~~~~~---------~~~~---------------------~~~~~~n~~~~~~l---- 111 (323)
++++ ++|+|||++|....... .++. ...-+..+.+|..+
T Consensus 129 ~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg~s 208 (401)
T 4ggo_A 129 QVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMGGE 208 (401)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHhhh
Confidence 8766 67999999997532110 0000 00001122222221
Q ss_pred ----H-HHHhhCC----cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-C
Q 020608 112 ----L-TAAKALG----VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-G 181 (323)
Q Consensus 112 ----~-~~~~~~~----~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~ 181 (323)
+ .+....+ -.++|-+|+.+.....+. | ....+|.+|...|..++.++.+. +
T Consensus 209 ~~s~w~~al~~a~lla~G~siva~SYiGse~t~P~----------------Y---~~G~mG~AKaaLEa~~r~La~eL~~ 269 (401)
T 4ggo_A 209 DWERWIKQLSKEGLLEEGCITLAYSYIGPEATQAL----------------Y---RKGTIGKAKEHLEATAHRLNKENPS 269 (401)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGHHH----------------H---TTSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhhhcccCCceEEEEeccCcceeecC----------------C---CccHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 2222221 247787777633211110 0 11348999999999999998886 6
Q ss_pred ccEEEEcCCCccCCCC
Q 020608 182 LDVVVVNPGTVMGPVI 197 (323)
Q Consensus 182 ~~~~~~Rp~~v~G~~~ 197 (323)
+++.++-++.+..+..
T Consensus 270 ~~a~v~v~~a~vT~As 285 (401)
T 4ggo_A 270 IRAFVSVNKGLVTRAS 285 (401)
T ss_dssp EEEEEEECCCCCCTTG
T ss_pred CcEEEEEcCccccchh
Confidence 7777777877777643
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=97.75 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=64.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+++||||+|++|++++..|++.|++|++++|+.++... ..+.+... .++.++.+|+++.+++.++++++|+||
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~--l~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~DvlV 193 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQA--AADSVNKR-FKVNVTAAETADDASRAEAVKGAHFVF 193 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH--HHHHHHHH-HTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHH--HHHHHHhc-CCcEEEEecCCCHHHHHHHHHhCCEEE
Confidence 567999999999999999999999999999999987432221 12222110 135667899999999999999999999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
|+|+.
T Consensus 194 n~ag~ 198 (287)
T 1lu9_A 194 TAGAI 198 (287)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 99975
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6e-10 Score=96.07 Aligned_cols=170 Identities=12% Similarity=0.067 Sum_probs=103.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHH----HHhhc-cCCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETA----HLKAL-EGADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~----~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
|||+||||+||+|++++..|+..|. ++.++++.. +....+ .+... ...+....+..++ +++.++++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~-~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al~ga 75 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH-SINKLEGLREDIYDALAGTRSDANIYVES----DENLRIIDES 75 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG-GHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGGTTC
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCC-chhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHhCCC
Confidence 4899999999999999999998885 677776611 111111 11111 1111222322221 2245568899
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
|+|||+|+.... ........++.|+.+++++++++++++ +.+|+++|- -+.... ....+... . .+
T Consensus 76 D~Vi~~Ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SN-Pv~~~t----~~~~k~~~-~------p~ 140 (313)
T 1hye_A 76 DVVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITN-PVDVMT----YKALVDSK-F------ER 140 (313)
T ss_dssp SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSS-SHHHHH----HHHHHHHC-C------CT
T ss_pred CEEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecC-cHHHHH----HHHHHhhC-c------Ch
Confidence 999999986432 122345678999999999999999988 877777775 211110 00000000 0 11
Q ss_pred CCchHH-HHHHHHHHHHHHHHhCCccEEEEcCCCccCCC
Q 020608 159 EIWYPL-SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPV 196 (323)
Q Consensus 159 ~~~Y~~-sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~ 196 (323)
...+|. +.+...++...+++..|++...++. .++|.+
T Consensus 141 ~rviG~gt~LD~~r~~~~la~~lgv~~~~v~~-~v~G~H 178 (313)
T 1hye_A 141 NQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIGEH 178 (313)
T ss_dssp TSEEECTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEECS
T ss_pred hcEEEeCccHHHHHHHHHHHHHhCcCHHHeEE-EEeecc
Confidence 245777 7776777777777777776555554 566644
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.3e-09 Score=80.47 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=72.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~V 81 (323)
++|++|+|+|+ |.+|+.+++.|.+.|++|++++|++ .. .+.+.. .....+.+|.++.+.+.++ +.++|+|
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~---~~---~~~~~~--~~~~~~~~d~~~~~~l~~~~~~~~d~v 74 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINE---EK---VNAYAS--YATHAVIANATEENELLSLGIRNFEYV 74 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCH---HH---HHTTTT--TCSEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCH---HH---HHHHHH--hCCEEEEeCCCCHHHHHhcCCCCCCEE
Confidence 46788999998 9999999999999999999998853 11 222221 1346788999998888775 6789999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
|++++.. .+.|. .+...+++.+.++++..++.
T Consensus 75 i~~~~~~------------~~~~~----~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 75 IVAIGAN------------IQAST----LTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp EECCCSC------------HHHHH----HHHHHHHHTTCSEEEEECCS
T ss_pred EECCCCc------------hHHHH----HHHHHHHHcCCCeEEEEeCC
Confidence 9998631 12232 35566777777777776665
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-09 Score=80.16 Aligned_cols=77 Identities=21% Similarity=0.135 Sum_probs=58.5
Q ss_pred CC-CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCC
Q 020608 1 MS-KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGC 78 (323)
Q Consensus 1 m~-~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~ 78 (323)
|+ ++|++|+|+|+ |.+|+.+++.|.+.|++|+++++++. ..+.+.. .++.++.+|.++++.++++ ++++
T Consensus 1 m~~~~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~---~~~~~~~-----~~~~~~~gd~~~~~~l~~~~~~~~ 71 (141)
T 3llv_A 1 MTENGRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKE---KIELLED-----EGFDAVIADPTDESFYRSLDLEGV 71 (141)
T ss_dssp -----CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH---HHHHHHH-----TTCEEEECCTTCHHHHHHSCCTTC
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHH---HHHHHHH-----CCCcEEECCCCCHHHHHhCCcccC
Confidence 54 35789999997 99999999999999999999988642 2222222 2577889999999988876 4578
Q ss_pred CEEEEccc
Q 020608 79 TGVFHLAS 86 (323)
Q Consensus 79 d~Vih~a~ 86 (323)
|+||.+.+
T Consensus 72 d~vi~~~~ 79 (141)
T 3llv_A 72 SAVLITGS 79 (141)
T ss_dssp SEEEECCS
T ss_pred CEEEEecC
Confidence 99998764
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-09 Score=90.37 Aligned_cols=167 Identities=14% Similarity=0.082 Sum_probs=98.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEec--CCCcHHHHHHHhhccC---CCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVK--NLSDERETAHLKALEG---ADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
|||+||||+|++|+.++..|+..|. ++.++++ +..... .....+.+ ....+.+.. + + .++++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~--~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~a 71 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTV--GQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGS 71 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHH--HHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHH--HHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCC
Confidence 5899999999999999999999885 6777766 321111 10111111 122334333 2 2 3347899
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccC
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQN 158 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 158 (323)
|+|||+|+....+ .......+..|+.+++++++++++++.+.+|+++|- -+.... ....+.. ... +
T Consensus 72 DvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN-Pv~~~~----~~~~~~~-~~p------~ 137 (303)
T 1o6z_A 72 DVVVITAGIPRQP--GQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN-PVDLLN----RHLYEAG-DRS------R 137 (303)
T ss_dssp SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS-SHHHHH----HHHHHHS-SSC------G
T ss_pred CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC-hHHHHH----HHHHHHc-CCC------H
Confidence 9999999864322 223346789999999999999999987777777765 111100 0000000 000 0
Q ss_pred CCchHH-HHHHHHHHHHHHHHhCCccEEEEcCCCccCCC
Q 020608 159 EIWYPL-SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPV 196 (323)
Q Consensus 159 ~~~Y~~-sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~ 196 (323)
....|. +-+..-++....++..|++..-++ ..++|.+
T Consensus 138 ~rviG~gt~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~H 175 (303)
T 1o6z_A 138 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVE-GTILGEH 175 (303)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHHTCCGGGEE-CCEEECS
T ss_pred HHeeecccchhHHHHHHHHHHHhCcCHHHeE-EEEEeCC
Confidence 133555 444444555555555566555555 6777754
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6.2e-09 Score=94.10 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=75.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+|+|+| +|++|+++++.|++.|++|++.+|+.. ..+. +.....++..+.+|++|.+++.++++++|+|||
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~---~a~~---la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn 74 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLE---SAKK---LSAGVQHSTPISLDVNDDAALDAEVAKHDLVIS 74 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHH---HHHH---TTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHH---HHHH---HHHhcCCceEEEeecCCHHHHHHHHcCCcEEEE
Confidence 578999998 799999999999999999999988642 2122 211112477889999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhH--H-------HHHHHHHHHHHhhCCcC
Q 020608 84 LASPCIVDKVEDPQNQLLNP--A-------VKGTVNVLTAAKALGVK 121 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~--n-------~~~~~~l~~~~~~~~~~ 121 (323)
+++...... .....++. | ...+.+++++|++.|++
T Consensus 75 ~a~~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~ 118 (450)
T 1ff9_A 75 LIPYTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGIT 118 (450)
T ss_dssp CCC--CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCE
T ss_pred CCccccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCe
Confidence 998632110 00111111 1 23577889999988863
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=71.64 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=68.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vi 82 (323)
.+|+|+|+|+ |++|+.+++.|.+.|++|++++|++.. .+.+... .++.++.+|.++.+.+.+. ++++|+||
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~---~~~~~~~----~~~~~~~~d~~~~~~l~~~~~~~~d~vi 74 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDI---CKKASAE----IDALVINGDCTKIKTLEDAGIEDADMYI 74 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHH----CSSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH---HHHHHHh----cCcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence 4579999986 999999999999999999999886422 2222110 1456788999998877655 67899999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
++.+. + ..|. .+...++..+.+++|..++
T Consensus 75 ~~~~~--------~-----~~~~----~~~~~~~~~~~~~ii~~~~ 103 (140)
T 1lss_A 75 AVTGK--------E-----EVNL----MSSLLAKSYGINKTIARIS 103 (140)
T ss_dssp ECCSC--------H-----HHHH----HHHHHHHHTTCCCEEEECS
T ss_pred EeeCC--------c-----hHHH----HHHHHHHHcCCCEEEEEec
Confidence 99742 1 1222 3455666666667665443
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.6e-08 Score=88.03 Aligned_cols=101 Identities=17% Similarity=0.242 Sum_probs=73.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC---CEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhcC--C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR---YTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVTG--C 78 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~--~ 78 (323)
|++|+|+|| |+||+.+++.|++.| .+|++.+|+..+... ..+.+.. ...++..+.+|++|.+++++++++ +
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~--la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~ 77 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQE--IAQSIKAKGYGEIDITTVDADSIEELVALINEVKP 77 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHH--HHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHH--HHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCC
Confidence 479999998 999999999999998 389999987533222 2222221 123588899999999999999987 8
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEec
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 127 (323)
|+|||+++.. . ...++++|.+.++ +++-++
T Consensus 78 DvVin~ag~~------------~------~~~v~~a~l~~g~-~vvD~a 107 (405)
T 4ina_A 78 QIVLNIALPY------------Q------DLTIMEACLRTGV-PYLDTA 107 (405)
T ss_dssp SEEEECSCGG------------G------HHHHHHHHHHHTC-CEEESS
T ss_pred CEEEECCCcc------------c------ChHHHHHHHHhCC-CEEEec
Confidence 9999999741 0 1356777777774 444443
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-08 Score=86.71 Aligned_cols=119 Identities=18% Similarity=0.048 Sum_probs=78.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC--E-----EEEEecCCCcHHHHHHHhhccCCC-CCeEEEEccCCCHhHHHHHhc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY--T-----VHATVKNLSDERETAHLKALEGAD-TRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~--~-----V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
.+||+||||+|+||++++..|+..|. + ++++++++...........+.+.. +-.. ++.-.+...+.++
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~----~~~~~~~~~~~~~ 78 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLK----DVIATDKEEIAFK 78 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEE----EEEEESCHHHHTT
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccC----CEEEcCCcHHHhC
Confidence 47999999999999999999998775 4 888876532111112222222211 1111 2222223456688
Q ss_pred CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC--EEEEeccc
Q 020608 77 GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK--RVVVTSSI 129 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~v~~SS~ 129 (323)
++|+|||+||.... ...+..+.++.|+..++++++++++++.+ +++.+|.-
T Consensus 79 daDvVvitAg~prk--pG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 79 DLDVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp TCSEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 99999999986432 22344568899999999999999988754 67777754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-07 Score=69.02 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vi 82 (323)
..++|+|+|+ |.+|+.+++.|.+.|++|+++.|++. +..+.+.... ..++.++.+|.++++.+.++ ++++|.||
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~--~~~~~~~~~~--~~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPE--DDIKQLEQRL--GDNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCH--HHHHHHHHHH--CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCh--HHHHHHHHhh--cCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 5678999996 99999999999999999999988631 1111221111 13678899999999999887 88999999
Q ss_pred Eccc
Q 020608 83 HLAS 86 (323)
Q Consensus 83 h~a~ 86 (323)
-+.+
T Consensus 77 ~~~~ 80 (153)
T 1id1_A 77 ALSD 80 (153)
T ss_dssp ECSS
T ss_pred EecC
Confidence 8864
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.6e-08 Score=78.91 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=54.7
Q ss_pred CCceEEEecc----------------ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC
Q 020608 4 EAEVVCVTGG----------------SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67 (323)
Q Consensus 4 ~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 67 (323)
++|+|||||| ||.+|.+++++|+++|++|+++.|+..... ....++.. .|++.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~---------~~~~~~~~--~~v~s 70 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP---------EPHPNLSI--REITN 70 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCC---------CCCTTEEE--EECCS
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccc---------cCCCCeEE--EEHhH
Confidence 6899999999 999999999999999999999998642110 00124443 45555
Q ss_pred HhHHH----HHhcCCCEEEEcccCCcc
Q 020608 68 YDAIA----AAVTGCTGVFHLASPCIV 90 (323)
Q Consensus 68 ~~~~~----~~~~~~d~Vih~a~~~~~ 90 (323)
.+++. +.+.++|++||+||...+
T Consensus 71 ~~em~~~v~~~~~~~Dili~aAAvsD~ 97 (232)
T 2gk4_A 71 TKDLLIEMQERVQDYQVLIHSMAVSDY 97 (232)
T ss_dssp HHHHHHHHHHHGGGCSEEEECSBCCSE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCccccc
Confidence 54433 345579999999997644
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-07 Score=81.90 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=70.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
-+.|||+|.|| |++|+.+++.|. +.++|.+.+|+.. ..+.+. .....+..|+.|.+++.++++++|+||
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~-~~~~v~~~~~~~~---~~~~~~------~~~~~~~~d~~d~~~l~~~~~~~DvVi 82 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLK-DEFDVYIGDVNNE---NLEKVK------EFATPLKVDASNFDKLVEVMKEFELVI 82 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHT-TTSEEEEEESCHH---HHHHHT------TTSEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CCccEEEEECC-CHHHHHHHHHHh-cCCCeEEEEcCHH---HHHHHh------ccCCcEEEecCCHHHHHHHHhCCCEEE
Confidence 35678999998 999999999886 4689999888642 222221 246678899999999999999999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEec
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 127 (323)
++++.. + ...++++|.+.++ ++|=+|
T Consensus 83 ~~~p~~------------~------~~~v~~~~~~~g~-~yvD~s 108 (365)
T 3abi_A 83 GALPGF------------L------GFKSIKAAIKSKV-DMVDVS 108 (365)
T ss_dssp ECCCGG------------G------HHHHHHHHHHHTC-EEEECC
T ss_pred EecCCc------------c------cchHHHHHHhcCc-ceEeee
Confidence 998641 1 1247788888874 776654
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.6e-07 Score=79.46 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=79.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCCCC--CeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGADT--RLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|||.|+||+|++|+.++..|++.| .+|+++++++ .. .....+.+... +++...+ .++++++++++|+|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~~---~~a~dL~~~~~~~~l~~~~~----t~d~~~a~~~aDvV 72 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TP---GVAADLSHIETRATVKGYLG----PEQLPDCLKGCDVV 72 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-HH---HHHHHHTTSSSSCEEEEEES----GGGHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-cH---HHHHHHhccCcCceEEEecC----CCCHHHHhCCCCEE
Confidence 489999999999999999999888 7999999875 11 12222222111 1222211 23577788999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
|++|+....+. ..-.+.+..|+..++.+++.+.+.+.. ++|++|--
T Consensus 73 vi~ag~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNP 119 (314)
T 1mld_A 73 VIPAGVPRKPG--MTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119 (314)
T ss_dssp EECCSCCCCTT--CCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred EECCCcCCCCC--CcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCC
Confidence 99998743322 223457889999999999998887643 77776554
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-07 Score=77.21 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=56.1
Q ss_pred CCCceEEEecc----------------ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC
Q 020608 3 KEAEVVCVTGG----------------SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66 (323)
Q Consensus 3 ~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (323)
+++|+|||||| ||.||.+++++|+++|++|+++.|+..- . . ..++. ..|++
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l-~-------~---~~g~~--~~dv~ 72 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL-P-------T---PPFVK--RVDVM 72 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC-C-------C---CTTEE--EEECC
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCccc-c-------c---CCCCe--EEccC
Confidence 57899999999 6999999999999999999998775421 0 0 11333 46888
Q ss_pred CHhHHHHH----hcCCCEEEEcccCCc
Q 020608 67 DYDAIAAA----VTGCTGVFHLASPCI 89 (323)
Q Consensus 67 ~~~~~~~~----~~~~d~Vih~a~~~~ 89 (323)
+.+++.+. +.++|++||+||...
T Consensus 73 ~~~~~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 73 TALEMEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred cHHHHHHHHHHhcCCCCEEEECCcccC
Confidence 86655443 457899999999764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.3e-07 Score=69.77 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vi 82 (323)
.+++|+|+|+ |.+|+.+++.|.+.|++|+++.|++.... .+.. ..+...+.+|..+.+.+.++ ++++|+||
T Consensus 18 ~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~------~~~~-~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 18 KSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFH------RLNS-EFSGFTVVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGG------GSCT-TCCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH------HHHh-cCCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence 4679999996 99999999999999999999998753321 2210 12456778999888877765 67899999
Q ss_pred Eccc
Q 020608 83 HLAS 86 (323)
Q Consensus 83 h~a~ 86 (323)
.+.+
T Consensus 90 ~~~~ 93 (155)
T 2g1u_A 90 AFTN 93 (155)
T ss_dssp ECSS
T ss_pred EEeC
Confidence 9875
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.5e-08 Score=88.09 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=61.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
++++++|+|+|+ |++|+++++.|++. |++|++.+|+.++. +.+... .++..+.+|+.|.+++.++++++|+
T Consensus 20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka---~~la~~----~~~~~~~~D~~d~~~l~~~l~~~Dv 91 (467)
T 2axq_A 20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANA---QALAKP----SGSKAISLDVTDDSALDKVLADNDV 91 (467)
T ss_dssp ---CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHH---HHHHGG----GTCEEEECCTTCHHHHHHHHHTSSE
T ss_pred CCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHH---HHHHHh----cCCcEEEEecCCHHHHHHHHcCCCE
Confidence 356889999997 99999999999998 78999999864222 222111 1466778999999999999999999
Q ss_pred EEEcccCC
Q 020608 81 VFHLASPC 88 (323)
Q Consensus 81 Vih~a~~~ 88 (323)
|||+++..
T Consensus 92 VIn~tp~~ 99 (467)
T 2axq_A 92 VISLIPYT 99 (467)
T ss_dssp EEECSCGG
T ss_pred EEECCchh
Confidence 99999763
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.6e-08 Score=82.26 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=31.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHH-CCCEEEEEecC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLE-RRYTVHATVKN 38 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~r~ 38 (323)
|.+++++|.|+|++|.+|+.+++.+++ .|+++++..+.
T Consensus 1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~ 39 (273)
T 1dih_A 1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALER 39 (273)
T ss_dssp -CCCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECC
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 777788999999999999999999885 47888865543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-06 Score=68.88 Aligned_cols=74 Identities=15% Similarity=0.021 Sum_probs=58.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH--hcCCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA--VTGCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~--~~~~d~ 80 (323)
.+++|+|+| .|.+|+.+++.|.+. |++|++++|++.. .+.+.. .++..+.+|.++.+.+.++ ++++|.
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~---~~~~~~-----~g~~~~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEA---AQQHRS-----EGRNVISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHH---HHHHHH-----TTCCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHH---HHHHHH-----CCCCEEEcCCCCHHHHHhccCCCCCCE
Confidence 457899998 599999999999999 9999999886422 222222 1566788999999888877 778999
Q ss_pred EEEccc
Q 020608 81 VFHLAS 86 (323)
Q Consensus 81 Vih~a~ 86 (323)
||.+.+
T Consensus 109 vi~~~~ 114 (183)
T 3c85_A 109 VLLAMP 114 (183)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 998764
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-06 Score=68.47 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=57.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 84 (323)
|+|+|+|+ |.+|+++++.|.+.|++|+++++++.. .+.+... .+..++.+|.++.+.+.++ ++++|.||-+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~---~~~l~~~----~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDREL---CEEFAKK----LKATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHH---HHHHHHH----SSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH---HHHHHHH----cCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 57999996 999999999999999999999886422 2222111 1577899999999998886 6789999976
Q ss_pred cc
Q 020608 85 AS 86 (323)
Q Consensus 85 a~ 86 (323)
.+
T Consensus 73 ~~ 74 (218)
T 3l4b_C 73 TP 74 (218)
T ss_dssp CS
T ss_pred cC
Confidence 53
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.5e-07 Score=77.17 Aligned_cols=118 Identities=13% Similarity=0.043 Sum_probs=75.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHH-HHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERE-TAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
|+++||.|+|++|++|+.++..|+..| .+|++++++...... ...+........++. -..++.++++++|
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~-------~t~d~~~al~dAD 78 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLT-------FTSDIKEALTDAK 78 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCE-------EESCHHHHHTTEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceE-------EcCCHHHHhCCCC
Confidence 457899999999999999999999998 489999875321111 011111111111222 1124566788999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCE--EEEeccc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR--VVVTSSI 129 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~v~~SS~ 129 (323)
+||.+||...-+ ...-.+.+..|+...+.+.+.+.+++.+- ++.+|.-
T Consensus 79 vVvitaG~p~kp--G~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNP 128 (343)
T 3fi9_A 79 YIVSSGGAPRKE--GMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP 128 (343)
T ss_dssp EEEECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSS
T ss_pred EEEEccCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCc
Confidence 999999863221 22334578899999999999998876443 5666543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.9e-06 Score=63.85 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=57.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih 83 (323)
.++|+|.|+ |.+|+.+++.|.+.|++|+++++++.. .+.+.. .++..+.+|.++.+.++++ ++++|.||-
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~---~~~~~~-----~g~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTR---VDELRE-----RGVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHH---HHHHHH-----TTCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHH---HHHHHH-----cCCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 368999996 999999999999999999999986422 222222 2678899999999988775 568899987
Q ss_pred ccc
Q 020608 84 LAS 86 (323)
Q Consensus 84 ~a~ 86 (323)
+.+
T Consensus 78 ~~~ 80 (140)
T 3fwz_A 78 TIP 80 (140)
T ss_dssp CCS
T ss_pred ECC
Confidence 764
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.2e-06 Score=70.99 Aligned_cols=84 Identities=6% Similarity=-0.001 Sum_probs=60.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHH-hhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHL-KALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+++++++|+|+ |.+|+.++..|++.|. +|++..|+....+..+.+ +.+... ........++.+.+++.+.+.++|+
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~-~~~~~~~~~~~~~~~l~~~l~~aDi 229 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSK-TDCKAQLFDIEDHEQLRKEIAESVI 229 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhh-cCCceEEeccchHHHHHhhhcCCCE
Confidence 56899999997 8999999999999998 899999984323333322 222111 1233445577777778888889999
Q ss_pred EEEcccCC
Q 020608 81 VFHLASPC 88 (323)
Q Consensus 81 Vih~a~~~ 88 (323)
||++....
T Consensus 230 IINaTp~G 237 (315)
T 3tnl_A 230 FTNATGVG 237 (315)
T ss_dssp EEECSSTT
T ss_pred EEECccCC
Confidence 99998654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-05 Score=68.56 Aligned_cols=119 Identities=15% Similarity=0.096 Sum_probs=77.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHH-HHHhhc-cCCCCCeEEEEccCCCHhHHHHHhc
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERET-AHLKAL-EGADTRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
|...++||.|+|+ |++|+.++..|+..|. +|++++++....... ..+... +.....+....+|. +.++
T Consensus 1 m~~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~-------~a~~ 72 (326)
T 3pqe_A 1 MNKHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTY-------EDCK 72 (326)
T ss_dssp -CCSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECG-------GGGT
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcH-------HHhC
Confidence 6666789999996 9999999999999986 899998753221110 011111 11112344443332 3577
Q ss_pred CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 77 GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
++|+||.+||...- ....-...+..|+.-...+.+.+.+++.+ .++.+|.-
T Consensus 73 ~aDvVvi~ag~p~k--pG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP 124 (326)
T 3pqe_A 73 DADIVCICAGANQK--PGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124 (326)
T ss_dssp TCSEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCEEEEecccCCC--CCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh
Confidence 89999999986322 12234557889999999999999887643 56665543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=4.1e-06 Score=66.99 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=62.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHH---HHhc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIA---AAVT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~--~~ 78 (323)
.+++|+|+||+|.||..+++.+...|++|++++|++ +..+.+.++ +... ..|.++.+..+ +... ++
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~---~~~~~~~~~---g~~~---~~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD---AKREMLSRL---GVEY---VGDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH---HHHHHHHTT---CCSE---EEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHc---CCCE---EeeCCcHHHHHHHHHHhCCCCC
Confidence 468999999999999999999999999999998853 222233332 1121 23665544333 3332 58
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
|+||++++. . .....++.++.. +++|.+++.
T Consensus 109 D~vi~~~g~----------~--------~~~~~~~~l~~~--G~~v~~g~~ 139 (198)
T 1pqw_A 109 DVVLNSLAG----------E--------AIQRGVQILAPG--GRFIELGKK 139 (198)
T ss_dssp EEEEECCCT----------H--------HHHHHHHTEEEE--EEEEECSCG
T ss_pred eEEEECCch----------H--------HHHHHHHHhccC--CEEEEEcCC
Confidence 999999862 0 122334444443 489998876
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.4e-06 Score=73.06 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=52.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh----c-CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV----T-GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----~-~~ 78 (323)
.+++|||+|++|.||..+++.+...|++|+++.|++.+.+ .++++. .. ...|+++.+++.+.+ . ++
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~---~~~~~g---~~---~~~d~~~~~~~~~~~~~~~~~~~ 239 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEE---LFRSIG---GE---VFIDFTKEKDIVGAVLKATDGGA 239 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHH---HHHHTT---CC---EEEETTTCSCHHHHHHHHHTSCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHH---HHHHcC---Cc---eEEecCccHhHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999998764332 222321 11 123665433333322 2 68
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||++++.
T Consensus 240 D~vi~~~g~ 248 (347)
T 2hcy_A 240 HGVINVSVS 248 (347)
T ss_dssp EEEEECSSC
T ss_pred CEEEECCCc
Confidence 999999873
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-05 Score=65.50 Aligned_cols=71 Identities=13% Similarity=0.016 Sum_probs=56.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih 83 (323)
.++|+|.|+ |.+|+.+++.|.+.|+ |+++.|++... +.+. .++.++.+|.++.+.++++ ++++|.||.
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~---~~~~------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRK---KVLR------SGANFVHGDPTRVSDLEKANVRGARAVIV 77 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHH---HHHH------TTCEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHH---HHHh------cCCeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence 468999997 9999999999999999 99987764322 2221 2578899999999999877 789999998
Q ss_pred ccc
Q 020608 84 LAS 86 (323)
Q Consensus 84 ~a~ 86 (323)
+.+
T Consensus 78 ~~~ 80 (234)
T 2aef_A 78 DLE 80 (234)
T ss_dssp CCS
T ss_pred cCC
Confidence 763
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.2e-05 Score=64.05 Aligned_cols=116 Identities=17% Similarity=0.134 Sum_probs=76.4
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCC-CcHHHHHHHhhcc------CCCCCeEEEEccCCCHhHHH
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNL-SDERETAHLKALE------GADTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~-~~~~~~~~~~~~~------~~~~~~~~~~~Dl~~~~~~~ 72 (323)
|.|++++|.|+|+ |.+|+.++..|+..|+ +|+++++++ .....-.. ..+. ....++.. ..| .
T Consensus 4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a-~dl~~~~~~~~~~~~i~~-t~d---~---- 73 (315)
T 3tl2_A 4 MTIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKA-LDMLEASPVQGFDANIIG-TSD---Y---- 73 (315)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHH-HHHHHHHHHHTCCCCEEE-ESC---G----
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhh-hhHHHhhhhccCCCEEEE-cCC---H----
Confidence 6666789999996 9999999999999999 999998863 11111111 1111 01112221 122 2
Q ss_pred HHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 73 AAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 73 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
+.++++|+||-+||...-+ ...-.+.+..|+.-...+.+.+.+++.+ .++.+|.
T Consensus 74 ~a~~~aDvVIiaag~p~kp--g~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 74 ADTADSDVVVITAGIARKP--GMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp GGGTTCSEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred HHhCCCCEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 3478899999999864322 2233567889999999999998877643 6666664
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.9e-05 Score=63.83 Aligned_cols=116 Identities=22% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHH-HHHh-hcc--CCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERET-AHLK-ALE--GADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~-~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
+.|||.|+|| |.+|+.++..|+..|+ +|+++++++...+.. ..+. ... ....++.. . .++++.++++
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t------~d~~ea~~~a 79 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E------YSYEAALTGA 79 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E------CSHHHHHTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-e------CCHHHHhCCC
Confidence 3468999998 9999999999999998 999998876443331 1111 111 01112221 1 2345568899
Q ss_pred CEEEEcccCCccCCCCC---chhhhhhHHHHHHHHHHHHHhhCCcC-EEEEec
Q 020608 79 TGVFHLASPCIVDKVED---PQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTS 127 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 127 (323)
|+||-+++...-+..+. .-......|+.-.+.+.+.+.+...+ .++.+|
T Consensus 80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 99999997532211100 22345677888888899988777544 344433
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-06 Score=68.41 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=48.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|+|+||+|++|+.+++.|++.|++|++++|++....... +.... .+. ..|+. .+++.++++++|+||++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~--~~~~~---~~~--~~~~~-~~~~~~~~~~~D~Vi~~~ 72 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKA--AEYRR---IAG--DASIT-GMKNEDAAEACDIAVLTI 72 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHH--HHHHH---HHS--SCCEE-EEEHHHHHHHCSEEEECS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HHhcc---ccc--cCCCC-hhhHHHHHhcCCEEEEeC
Confidence 47999999999999999999999999999998643222211 11100 000 01222 134556677899999997
Q ss_pred c
Q 020608 86 S 86 (323)
Q Consensus 86 ~ 86 (323)
.
T Consensus 73 ~ 73 (212)
T 1jay_A 73 P 73 (212)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.4e-05 Score=68.92 Aligned_cols=75 Identities=16% Similarity=0.082 Sum_probs=57.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhh-ccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKA-LEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++++|+|+|+ |.||+.+++.|...|++|++++|++.+. +.+.+ + +.. +.+|..+.+++.+++.++|+|
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~---~~~~~~~---g~~---~~~~~~~~~~l~~~~~~~DvV 233 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRL---QYLDDVF---GGR---VITLTATEANIKKSVQHADLL 233 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHT---TTS---EEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHH---HHHHHhc---Cce---EEEecCCHHHHHHHHhCCCEE
Confidence 45789999999 9999999999999999999998864222 22222 2 112 456777888888888999999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|++++.
T Consensus 234 i~~~g~ 239 (369)
T 2eez_A 234 IGAVLV 239 (369)
T ss_dssp EECCC-
T ss_pred EECCCC
Confidence 999975
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=7.5e-05 Score=64.18 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=69.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCC---CCCeEEEEccCCCHhHHHHHhcCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGA---DTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
+++||.|+|+ |++|..++..|+..|. +|++++++....+. ....+.+. ...+.+. . .+ .+.++++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g--~~~dl~~~~~~~~~~~i~-~--~~----~~a~~~a 75 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIG--EAMDINHGLPFMGQMSLY-A--GD----YSDVKDC 75 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCH--HHHHHTTSCCCTTCEEEC-----C----GGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHH--HHHHHHHhHHhcCCeEEE-E--CC----HHHhCCC
Confidence 4578999998 9999999999999987 99999887533221 11122111 1133322 2 22 2347899
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEe
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVT 126 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~ 126 (323)
|+||.+++...-+ ...-.+.+..|+.....+.+.+.+++.+ .++++
T Consensus 76 DvVii~~g~p~k~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (318)
T 1y6j_A 76 DVIVVTAGANRKP--GETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV 122 (318)
T ss_dssp SEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred CEEEEcCCCCCCC--CcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence 9999999863221 1123456788999999999998876544 44443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00013 Score=62.49 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=70.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCC----CCCeEEEE-ccCCCHhHHHHHhcCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGA----DTRLRLFQ-IDLLDYDAIAAAVTGC 78 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~-~Dl~~~~~~~~~~~~~ 78 (323)
++||.|+|+ |.+|+.++..|+..|+ +|+++++++...+. ....+.+. .....+.. .| + +.++++
T Consensus 2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g--~~~dl~~~~~~~~~~~~i~~t~d------~-~a~~~a 71 (309)
T 1ur5_A 2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQG--KALDLYEASPIEGFDVRVTGTNN------Y-ADTANS 71 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHH--HHHHHHTTHHHHTCCCCEEEESC------G-GGGTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHH--HHHhHHHhHhhcCCCeEEEECCC------H-HHHCCC
Confidence 379999998 9999999999999997 98888876543321 11122110 11112111 33 2 347889
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
|+||.+++....+.. .-......|+.....+.+.+.+.+.+.++.+.|-
T Consensus 72 D~Vi~a~g~p~~~g~--~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 120 (309)
T 1ur5_A 72 DVIVVTSGAPRKPGM--SREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120 (309)
T ss_dssp SEEEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred CEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 999999986432211 1234567788888999999888765555544443
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.3e-05 Score=67.04 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=50.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh-----cCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV-----TGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 78 (323)
.+++||||||+|.||..+++.+...|++|++++|+. +..+.++++. .. ...|.++.+++.+.+ .++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~---~~~~~~~~~g---~~---~~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD---EKIAYLKQIG---FD---AAFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH---HHHHHHHHTT---CS---EEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHhcC---Cc---EEEecCCHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999999999998853 2223333331 12 224665522222222 258
Q ss_pred CEEEEccc
Q 020608 79 TGVFHLAS 86 (323)
Q Consensus 79 d~Vih~a~ 86 (323)
|+||+++|
T Consensus 216 d~vi~~~g 223 (333)
T 1v3u_A 216 DCYFDNVG 223 (333)
T ss_dssp EEEEESSC
T ss_pred eEEEECCC
Confidence 99999997
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.8e-05 Score=65.57 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=57.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHH-hhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHL-KALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+++++++|+|+ |.+|+.++..|++.|. +|++..|+..+.+..+.+ +.+... .+......++.+.+.+.+.+.++|+
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~-~~~~v~~~~~~~l~~~~~~l~~~Di 223 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNEN-TDCVVTVTDLADQHAFTEALASADI 223 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhc-cCcceEEechHhhhhhHhhccCceE
Confidence 46899999997 9999999999999998 899999984433333322 222110 1233334466665445666778999
Q ss_pred EEEcccCC
Q 020608 81 VFHLASPC 88 (323)
Q Consensus 81 Vih~a~~~ 88 (323)
||++....
T Consensus 224 IINaTp~G 231 (312)
T 3t4e_A 224 LTNGTKVG 231 (312)
T ss_dssp EEECSSTT
T ss_pred EEECCcCC
Confidence 99998654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=6e-05 Score=67.18 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=58.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vi 82 (323)
..++|+|.|. |-+|+.+++.|.+.|++|+++++++.. .+.+.. .++.++.||.++++.+.++ ++++|+||
T Consensus 3 ~~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~---v~~~~~-----~g~~vi~GDat~~~~L~~agi~~A~~vi 73 (413)
T 3l9w_A 3 HGMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDH---IETLRK-----FGMKVFYGDATRMDLLESAGAAKAEVLI 73 (413)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHH---HHHHHH-----TTCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHH---HHHHHh-----CCCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence 3578999996 999999999999999999999886532 222222 2567889999999999887 77899998
Q ss_pred Eccc
Q 020608 83 HLAS 86 (323)
Q Consensus 83 h~a~ 86 (323)
-+..
T Consensus 74 v~~~ 77 (413)
T 3l9w_A 74 NAID 77 (413)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 7763
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=7.7e-05 Score=61.79 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=66.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc-----------------HHHHHHHhhccCCCC--CeEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD-----------------ERETAHLKALEGADT--RLRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~ 63 (323)
++++|+|.|+ |.+|+++++.|+..|. ++++++++.-. .......+.+...++ .++.+..
T Consensus 30 ~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 108 (249)
T 1jw9_B 30 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 108 (249)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence 3579999995 9999999999999997 88888876511 111122222222122 4556666
Q ss_pred cCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
++++ +.+.++++++|+||.+... +. .-..+.++|++.++ .+|+.+..
T Consensus 109 ~~~~-~~~~~~~~~~DvVi~~~d~---------~~--------~~~~l~~~~~~~~~-p~i~~~~~ 155 (249)
T 1jw9_B 109 LLDD-AELAALIAEHDLVLDCTDN---------VA--------VRNQLNAGCFAAKV-PLVSGAAI 155 (249)
T ss_dssp CCCH-HHHHHHHHTSSEEEECCSS---------HH--------HHHHHHHHHHHHTC-CEEEEEEE
T ss_pred cCCH-hHHHHHHhCCCEEEEeCCC---------HH--------HHHHHHHHHHHcCC-CEEEeeec
Confidence 6753 5567788899999988632 11 22335556666663 56665443
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.4e-05 Score=66.02 Aligned_cols=176 Identities=16% Similarity=0.068 Sum_probs=101.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-------EEEEEecCCCcHHHHHHHhhccCC--CCCeEEEEccCCCHhHHHHH
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-------TVHATVKNLSDERETAHLKALEGA--DTRLRLFQIDLLDYDAIAAA 74 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~ 74 (323)
+.-||.|+||+|.||+.|+-.|++... ++.+++..+......-....+.+. ......+.++ +..+.
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~-----~~~~a 97 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTA-----DPRVA 97 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEES-----CHHHH
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcC-----ChHHH
Confidence 445999999999999999999987642 688777643211111111122211 1112222222 23567
Q ss_pred hcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC-cC-EEEEecccccccCCCCCCCCccccCC-CCCC
Q 020608 75 VTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG-VK-RVVVTSSISSITPSPKWPADKVKDED-CWTD 151 (323)
Q Consensus 75 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~SS~~~~~~~~~~~~~~~~~e~-~~~~ 151 (323)
++++|+||-+||...-+ ...-.+.++.|..-.+.+.+...++. -. +++.+|.-.-.... ...... ..+.
T Consensus 98 ~~~advVvi~aG~prkp--GmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~------i~~~~~~g~~~ 169 (345)
T 4h7p_A 98 FDGVAIAIMCGAFPRKA--GMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNAL------ILLKSAQGKLN 169 (345)
T ss_dssp TTTCSEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH------HHHHHTTTCSC
T ss_pred hCCCCEEEECCCCCCCC--CCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHH------HHHHHccCCCC
Confidence 89999999999874322 22345688999999999999987753 22 56666643100000 000000 0011
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
+...-+.+.+..-++-...+++.+++...++-..|+|.+..
T Consensus 170 ------~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~ 210 (345)
T 4h7p_A 170 ------PRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS 210 (345)
T ss_dssp ------GGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST
T ss_pred ------cceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC
Confidence 11334555555556666666677887777776677787544
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00022 Score=61.23 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHH-HHHhhc---cCCCCCeEEEEccCCCHhHHHHHhcC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERET-AHLKAL---EGADTRLRLFQIDLLDYDAIAAAVTG 77 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (323)
|+++||.|+|+ |.+|+.++..|+..|+ +|+++++++...+.. ..+.+. .....++.. ..| . +++++
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d---~----~a~~~ 75 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AND---Y----AAIEG 75 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESS---G----GGGTT
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCC---H----HHHCC
Confidence 56789999998 9999999999999998 999999877543211 111111 111112221 233 2 35789
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
+|+||.+|+...-+. ..-.+.+..|+.-...+.+.+.+++.. .++.+|.-
T Consensus 76 aDiVIiaag~p~k~G--~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP 126 (324)
T 3gvi_A 76 ADVVIVTAGVPRKPG--MSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP 126 (324)
T ss_dssp CSEEEECCSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCEEEEccCcCCCCC--CCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 999999998632211 123356788999999999998877633 66666643
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=2e-05 Score=68.19 Aligned_cols=74 Identities=11% Similarity=0.044 Sum_probs=51.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHH---HHhc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIA---AAVT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~--~~ 78 (323)
.+++|||+||+|.||..+++.+...|++|++++|++. ..+.+.++. ... ..|.++.+..+ +... ++
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~---~~~~~~~~g---~~~---~~~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ---KAQSALKAG---AWQ---VINYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH---HHHHHHHHT---CSE---EEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHcC---CCE---EEECCCccHHHHHHHHhCCCCc
Confidence 4689999999999999999999999999999988632 223333331 121 23555543333 3322 58
Q ss_pred CEEEEccc
Q 020608 79 TGVFHLAS 86 (323)
Q Consensus 79 d~Vih~a~ 86 (323)
|+||+++|
T Consensus 211 D~vi~~~g 218 (327)
T 1qor_A 211 RVVYDSVG 218 (327)
T ss_dssp EEEEECSC
T ss_pred eEEEECCc
Confidence 99999997
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.84 E-value=2.3e-05 Score=65.92 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=50.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++++++|+|+ |.+|+.++..|++.|.+|++.+|+.++.. +..+.+.... .+. ..|+ +++.+ .++|+||
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~--~la~~~~~~~-~~~--~~~~---~~~~~--~~~DivV 185 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAE--ELAKLFAHTG-SIQ--ALSM---DELEG--HEFDLII 185 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHH--HHHHHTGGGS-SEE--ECCS---GGGTT--CCCSEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHH--HHHHHhhccC-Cee--EecH---HHhcc--CCCCEEE
Confidence 46789999998 78999999999999999999988643222 2222221111 221 2333 22222 5799999
Q ss_pred EcccCCc
Q 020608 83 HLASPCI 89 (323)
Q Consensus 83 h~a~~~~ 89 (323)
++++...
T Consensus 186 n~t~~~~ 192 (271)
T 1nyt_A 186 NATSSGI 192 (271)
T ss_dssp ECCSCGG
T ss_pred ECCCCCC
Confidence 9998643
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00012 Score=62.98 Aligned_cols=113 Identities=14% Similarity=0.186 Sum_probs=65.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCC---CCCeEEEEccCCCHhHHHHHhcCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGA---DTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
.++||.|+|+ |.+|+.++..|+..|. +++++++++.... .....+.+. ...+....+| . +.++++
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~--g~a~DL~~~~~~~~~~~i~~~~---~----~a~~~a 77 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTK--GDAIDLEDALPFTSPKKIYSAE---Y----SDAKDA 77 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHH--HHHHHHHTTGGGSCCCEEEECC---G----GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHH--HHHhhHhhhhhhcCCcEEEECc---H----HHhcCC
Confidence 5689999996 9999999999999886 8999987532211 111112111 1234444333 2 347889
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
|+||++||...-+ ...-.+.++.|+.-...+.+.+.+++.+ .++.+|.
T Consensus 78 DiVvi~ag~~~kp--G~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 78 DLVVITAGAPQKP--GETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp SEEEECCCCC------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred CEEEECCCCCCCC--CchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 9999999863221 1223457788999999999998887643 5666554
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.81 E-value=1.7e-05 Score=68.89 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=60.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-----C-EEEEEecCCCcHHHHH-HHhhccCCCCCeEEEEccCCCHhHHHHHhc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-----Y-TVHATVKNLSDERETA-HLKALEGADTRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-----~-~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
+|++|+|.||||++|+.|++.|++++ + +++.+.+..+...... ....+... .++.+ .|+ +.+ .+.
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~-~~~~~--~~~-~~~----~~~ 79 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPL-AHRVV--EPT-EAA----VLG 79 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGG-TTCBC--EEC-CHH----HHT
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhccccccc-ceeee--ccC-CHH----Hhc
Confidence 46899999999999999999999887 4 7887764332111100 00001000 01111 122 222 256
Q ss_pred CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccccc
Q 020608 77 GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISS 131 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~ 131 (323)
++|+||-+.+... +..++..+ +.| .++|-+|+...
T Consensus 80 ~~DvVf~alg~~~------------------s~~~~~~~-~~G-~~vIDlSa~~R 114 (352)
T 2nqt_A 80 GHDAVFLALPHGH------------------SAVLAQQL-SPE-TLIIDCGADFR 114 (352)
T ss_dssp TCSEEEECCTTSC------------------CHHHHHHS-CTT-SEEEECSSTTT
T ss_pred CCCEEEECCCCcc------------------hHHHHHHH-hCC-CEEEEECCCcc
Confidence 8999999986521 33455666 666 48888888743
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.5e-05 Score=67.74 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=51.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhH---HHHHh--cCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDA---IAAAV--TGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~--~~~ 78 (323)
.+++|||+||+|.||..+++.+...|++|++++|+.. ..+.++++. ... ..|.++.+. +.+.. .++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~---~~~~~~~~g---~~~---~~d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEE---KAETARKLG---CHH---TINYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHH---HHHHHHHHT---CSE---EEETTTSCHHHHHHHHHTTCCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHcC---CCE---EEECCCHHHHHHHHHHhCCCCC
Confidence 4679999999999999999999999999999988642 223333331 121 235554333 33333 268
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||+++|.
T Consensus 216 d~vi~~~g~ 224 (333)
T 1wly_A 216 DVVYDSIGK 224 (333)
T ss_dssp EEEEECSCT
T ss_pred eEEEECCcH
Confidence 999999974
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00031 Score=60.27 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=76.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHH-HHHhhcc-CCCCCeEEE-EccCCCHhHHHHHhcCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERET-AHLKALE-GADTRLRLF-QIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~~~~-~~~~~~~~~-~~Dl~~~~~~~~~~~~~ 78 (323)
|+++||.|+|+ |.+|+.++..|+..|. +|+++++++...... ..+.+.. .......+. ..| . +.++++
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d---~----~a~~~a 74 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND---Y----KDLENS 74 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC---G----GGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC---H----HHHCCC
Confidence 56789999995 9999999999999988 999998876543211 1111110 001122222 122 2 357889
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
|+||.+|+...-+ ...-.+.+..|+.-...+.+.+.+++.+ .++.+|.
T Consensus 75 DvVIi~ag~p~k~--G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 75 DVVIVTAGVPRKP--GMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp SEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CEEEEcCCcCCCC--CCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 9999999863221 1233457788999999999998887644 6666654
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00031 Score=59.50 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=96.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHH-HHHHhhc-cCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERE-TAHLKAL-EGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|||.|+|+ |.+|+.++..|+..|+ +|.++++++...+. ...+... ........+... +| .++++++|+|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~~aDiV 73 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLKGSEII 73 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhCCCCEE
Confidence 58999998 9999999999999998 99999886533221 0111111 111112222211 12 3357889999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|.+|+...-+ ...-.+.+..|+.-...+.+.+.+++.+ .++++|.-.-... ....+... .+ +..
T Consensus 74 Viaag~~~kp--G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t------~~~~k~~g-~p------~~r 138 (294)
T 1oju_A 74 VVTAGLARKP--GMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMT------YIMWKESG-KP------RNE 138 (294)
T ss_dssp EECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHH------HHHHHHSC-CC------TTS
T ss_pred EECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHH------HHHHHhcC-CC------HHH
Confidence 9999864221 1234567888999999999999888643 6666664311100 00000000 00 113
Q ss_pred chHH-HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCC
Q 020608 161 WYPL-SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVI 197 (323)
Q Consensus 161 ~Y~~-sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~ 197 (323)
..|. +-+..-++-...+ +.+++... -+.|+|.+.
T Consensus 139 viG~gt~LD~~R~~~~la-~l~v~~~~--~~~V~G~Hg 173 (294)
T 1oju_A 139 VFGMGNQLDSQRLKERLY-NAGARNIR--RAWIIGEHG 173 (294)
T ss_dssp EEECSHHHHHHHHHHHHH-HTTCBSCC--CCCEEBCSS
T ss_pred EeecccccHHHHHHHHHH-HhCCCccC--ceEEEecCC
Confidence 3455 3444455555556 66776655 567777763
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00045 Score=59.33 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=73.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHH-HHHHhh-ccCCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERE-TAHLKA-LEGADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
|+++||.|+|+ |.+|+.++..|+..|. +|.++++++..... ...+.. .+..+..+.+.. | + .++++++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~~a 75 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCHDA 75 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhCCC
Confidence 45679999998 9999999999998884 89888775422211 011111 111112333332 2 2 3347899
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEec
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTS 127 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 127 (323)
|+||.+++....+ ...-...+..|+.-...+.+.+.+++.. .++++|
T Consensus 76 DvVvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 76 DLVVICAGAAQKP--GETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CEEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 9999999864221 2223456788999999999998887644 455543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.4e-05 Score=65.50 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=50.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHh-hccCCCCCeEEEEccCCCH----hHHHHHh-cC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLK-ALEGADTRLRLFQIDLLDY----DAIAAAV-TG 77 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~----~~~~~~~-~~ 77 (323)
.+++|||+||+|.||..+++.+...|++|++++|+. +..+.+. ++ +... ..|..+. +.+.++. .+
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~---~~~~~~~~~~---g~~~---~~d~~~~~~~~~~~~~~~~~~ 225 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK---EKVDLLKTKF---GFDD---AFNYKEESDLTAALKRCFPNG 225 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH---HHHHHHHHTS---CCSE---EEETTSCSCSHHHHHHHCTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHHc---CCce---EEecCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999999999999998853 2223332 23 1121 2355443 2233322 26
Q ss_pred CCEEEEccc
Q 020608 78 CTGVFHLAS 86 (323)
Q Consensus 78 ~d~Vih~a~ 86 (323)
+|+||++++
T Consensus 226 ~d~vi~~~g 234 (345)
T 2j3h_A 226 IDIYFENVG 234 (345)
T ss_dssp EEEEEESSC
T ss_pred CcEEEECCC
Confidence 899999986
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=9e-05 Score=64.85 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=51.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhH---HHHHhc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDA---IAAAVT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~--~~ 78 (323)
.+++|||+||+|.||..+++.+...|++|++++|++. ..+.++++. .. ...|..+.+. +.+... ++
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~---~~~~~~~~g---~~---~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQK---KLQMAEKLG---AA---AGFNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHHT---CS---EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHcC---Cc---EEEecCChHHHHHHHHHhcCCCc
Confidence 4679999999999999999999999999999988642 223333331 12 1235544333 333332 68
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||+++|.
T Consensus 233 d~vi~~~G~ 241 (354)
T 2j8z_A 233 NLILDCIGG 241 (354)
T ss_dssp EEEEESSCG
T ss_pred eEEEECCCc
Confidence 999999974
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00032 Score=59.89 Aligned_cols=173 Identities=16% Similarity=0.057 Sum_probs=98.4
Q ss_pred ceEEEeccccHHHHHHHHHHHHC-C--CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER-R--YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
|||.|+||+|.+|+.++..|.++ + .+++++++++ ... .....+.+.......... .+ ++..+.++++|+||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~--G~a~Dl~~~~~~~~v~~~-~~--~~~~~~~~~aDivi 74 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTP--GVAVDLSHIPTAVKIKGF-SG--EDATPALEGADVVL 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THH--HHHHHHHTSCSSEEEEEE-CS--SCCHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-Cch--hHHHHhhCCCCCceEEEe-cC--CCcHHHhCCCCEEE
Confidence 58999999999999999999875 5 4888888765 221 222222222222222110 01 01234578999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
-+||...- ....-.+.++.|+.-...+.+.+.+++.+ .++.+|.-.......- ....+.....+ +...
T Consensus 75 i~ag~~rk--pG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a---~~~~k~sg~~p------~~rv 143 (312)
T 3hhp_A 75 ISAGVARK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIA---AEVLKKAGVYD------KNKL 143 (312)
T ss_dssp ECCSCSCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHH---HHHHHHTTCCC------TTSE
T ss_pred EeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHH---HHHHHHcCCCC------cceE
Confidence 99986422 22334568889999999999998877533 6666654311000000 00000000000 1133
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCC
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPV 196 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~ 196 (323)
.|.+-+-.-++....++..|++...++ +.|+|.+
T Consensus 144 ~G~~~LD~~R~~~~la~~lgv~~~~v~-~~V~G~H 177 (312)
T 3hhp_A 144 FGVTTLDIIRSNTFVAELKGKQPGEVE-VPVIGGH 177 (312)
T ss_dssp EECCHHHHHHHHHHHHHHHTCCGGGCC-CCEEECS
T ss_pred EEEechhHHHHHHHHHHHhCcChhHcc-eeEEecc
Confidence 555533344555555666677766677 6788876
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00015 Score=62.81 Aligned_cols=94 Identities=27% Similarity=0.289 Sum_probs=56.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC---EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY---TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++|+|.||||.+|+.+++.|+++++ +++.+....+... .+...+..+.+ .|+ +++ .++++|+|
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~------~~~~~g~~i~~--~~~-~~~----~~~~~DvV 72 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ------RMGFAESSLRV--GDV-DSF----DFSSVGLA 72 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC------EEEETTEEEEC--EEG-GGC----CGGGCSEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCC------ccccCCcceEE--ecC-CHH----HhcCCCEE
Confidence 46899999999999999999997764 5565542211100 00000011111 122 121 14689999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSIS 130 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (323)
|-+.+. ..+..++..+.+.|+ ++|.+|+..
T Consensus 73 ~~a~g~------------------~~s~~~a~~~~~aG~-kvId~Sa~~ 102 (340)
T 2hjs_A 73 FFAAAA------------------EVSRAHAERARAAGC-SVIDLSGAL 102 (340)
T ss_dssp EECSCH------------------HHHHHHHHHHHHTTC-EEEETTCTT
T ss_pred EEcCCc------------------HHHHHHHHHHHHCCC-EEEEeCCCC
Confidence 998863 124456667777776 578778763
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=8.7e-05 Score=64.85 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=51.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhH---HHHHhc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDA---IAAAVT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~--~~ 78 (323)
.+++|||+||+|.||..+++.+...|++|++++|++. ..+.++++. .. ...|..+.+. +.+... ++
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~---~~~~~~~~g---a~---~~~d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE---GQKIVLQNG---AH---EVFNHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH---HHHHHHHTT---CS---EEEETTSTTHHHHHHHHHCTTCE
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChh---HHHHHHHcC---CC---EEEeCCCchHHHHHHHHcCCCCc
Confidence 4679999999999999999999999999999988642 223333331 12 1235554433 333333 68
Q ss_pred CEEEEccc
Q 020608 79 TGVFHLAS 86 (323)
Q Consensus 79 d~Vih~a~ 86 (323)
|+||+++|
T Consensus 241 D~vi~~~G 248 (351)
T 1yb5_A 241 DIIIEMLA 248 (351)
T ss_dssp EEEEESCH
T ss_pred EEEEECCC
Confidence 99999986
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.69 E-value=8.6e-05 Score=62.63 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=53.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++++++|+|+ |.+|+.++..|++.|. +|++.+|+.++.+. ..+.+....+.+.+...++ +++.+.+.++|+|
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~--la~~~~~~~~~~~i~~~~~---~~l~~~l~~~DiV 198 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQA--LADVINNAVGREAVVGVDA---RGIEDVIAAADGV 198 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHH--HHHHHHHHHTSCCEEEECS---TTHHHHHHHSSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHH--HHHHHHhhcCCceEEEcCH---HHHHHHHhcCCEE
Confidence 56899999997 9999999999999998 79999887543322 1122211111222233343 3455667789999
Q ss_pred EEcccCC
Q 020608 82 FHLASPC 88 (323)
Q Consensus 82 ih~a~~~ 88 (323)
|++....
T Consensus 199 InaTp~G 205 (283)
T 3jyo_A 199 VNATPMG 205 (283)
T ss_dssp EECSSTT
T ss_pred EECCCCC
Confidence 9998653
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.69 E-value=6.4e-05 Score=62.87 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHC-CCEEEEE-ecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLER-RYTVHAT-VKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|+|+||.|+|++|.+|+.+++.+.+. ++++++. +|+.+...- .....+. +.. .++.-.++++++++++|+
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G-~d~gel~----g~~---~gv~v~~dl~~ll~~~DV 76 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLG-QDAGAFL----GKQ---TGVALTDDIERVCAEADY 76 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTT-SBTTTTT----TCC---CSCBCBCCHHHHHHHCSE
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccccc-ccHHHHh----CCC---CCceecCCHHHHhcCCCE
Confidence 45789999999999999999999876 6787775 444321100 0000000 000 022222345666668999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
||+++.. ..+...+..|.+.|+ ++| ++|+
T Consensus 77 VIDfT~p------------------~a~~~~~~~al~~G~-~vV-igTT 105 (272)
T 4f3y_A 77 LIDFTLP------------------EGTLVHLDAALRHDV-KLV-IGTT 105 (272)
T ss_dssp EEECSCH------------------HHHHHHHHHHHHHTC-EEE-ECCC
T ss_pred EEEcCCH------------------HHHHHHHHHHHHcCC-CEE-EECC
Confidence 9998632 133456667777764 544 3444
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00045 Score=58.21 Aligned_cols=106 Identities=12% Similarity=0.131 Sum_probs=67.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc----------------HHHHHHHhhccCCC--CCeEEEEcc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD----------------ERETAHLKALEGAD--TRLRLFQID 64 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~----------------~~~~~~~~~~~~~~--~~~~~~~~D 64 (323)
+.++|+|.|+ |.+|++++..|+..|. ++++++++.-. .......+.+...+ .+++.+..+
T Consensus 35 ~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~ 113 (292)
T 3h8v_A 35 RTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 113 (292)
T ss_dssp GGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred hCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence 4579999995 9999999999999996 77777654311 11111222222223 356667778
Q ss_pred CCCHhHHHHHh-----------cCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 65 LLDYDAIAAAV-----------TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 65 l~~~~~~~~~~-----------~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
+++.+.+++++ +++|+||.+.- ++ ..-..+.++|.+.++ .+|+.+.
T Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D---------n~--------~~R~~in~~c~~~~~-Pli~~gv 170 (292)
T 3h8v_A 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD---------NF--------EARMTINTACNELGQ-TWMESGV 170 (292)
T ss_dssp TTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS---------SH--------HHHHHHHHHHHHHTC-CEEEEEE
T ss_pred CCcHHHHHHHhhhhcccccccCCCCCEEEECCc---------ch--------hhhhHHHHHHHHhCC-CEEEeee
Confidence 88766666655 58999998752 11 122335566777764 6666544
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00061 Score=58.47 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=73.7
Q ss_pred CCC-CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHH--HHHHhhccCCCCCeEEEEccCCCHhHHHHHh
Q 020608 1 MSK-EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERE--TAHLKALEGADTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 1 m~~-~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
|+. +++||.|+|+ |.+|+.++..|+..|. +|+++++++..... ....+..........+.. | +. +.+
T Consensus 1 m~~~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~~----~al 72 (316)
T 1ldn_A 1 MKNNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--DY----DDC 72 (316)
T ss_dssp CTTTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--CG----GGT
T ss_pred CCCCCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--cH----HHh
Confidence 554 4579999998 9999999999998774 89999886421111 011111111111334332 2 22 347
Q ss_pred cCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 76 TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 76 ~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
+++|+||-+++....+.. .-...+..|..-...+.+.+.+.... .++++|-
T Consensus 73 ~~aDvViia~~~~~~~g~--~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN 124 (316)
T 1ldn_A 73 RDADLVVICAGANQKPGE--TRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (316)
T ss_dssp TTCSEEEECCSCCCCTTT--CSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CCCCEEEEcCCCCCCCCC--CHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 899999999987543322 22446778888888888888776533 4555443
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00016 Score=63.33 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=49.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhh-ccCCCCCeEEEEccCCCHhH---HHHHhc-CCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKA-LEGADTRLRLFQIDLLDYDA---IAAAVT-GCT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~---~~~~~~-~~d 79 (323)
++|||+||+|.||..+++.+...|+ +|++++|+. +..+.+.+ +. .. ...|..+.+. +.+... ++|
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~---~~~~~~~~~~g---~~---~~~d~~~~~~~~~~~~~~~~~~d 232 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH---EKCILLTSELG---FD---AAINYKKDNVAEQLRESCPAGVD 232 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH---HHHHHHHHTSC---CS---EEEETTTSCHHHHHHHHCTTCEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH---HHHHHHHHHcC---Cc---eEEecCchHHHHHHHHhcCCCCC
Confidence 8999999999999999999999999 999998863 22222222 31 12 2245554332 222222 589
Q ss_pred EEEEccc
Q 020608 80 GVFHLAS 86 (323)
Q Consensus 80 ~Vih~a~ 86 (323)
+||+++|
T Consensus 233 ~vi~~~G 239 (357)
T 2zb4_A 233 VYFDNVG 239 (357)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9999997
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.63 E-value=8.2e-05 Score=63.34 Aligned_cols=77 Identities=8% Similarity=0.084 Sum_probs=53.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++++|+|+|+ |.+|+.++..|++.|. +|++.+|+.++.. +..+.+.... . ++.+.+++.+.+.++|+|
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~--~la~~~~~~~-~------~~~~~~~~~~~~~~aDiv 208 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAE--RLVREGDERR-S------AYFSLAEAETRLAEYDII 208 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHH--HHHHHSCSSS-C------CEECHHHHHHTGGGCSEE
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHH--HHHHHhhhcc-C------ceeeHHHHHhhhccCCEE
Confidence 46789999997 8899999999999997 9999988643222 2222221100 0 222335677778899999
Q ss_pred EEcccCCc
Q 020608 82 FHLASPCI 89 (323)
Q Consensus 82 ih~a~~~~ 89 (323)
|++.+...
T Consensus 209 In~t~~~~ 216 (297)
T 2egg_A 209 INTTSVGM 216 (297)
T ss_dssp EECSCTTC
T ss_pred EECCCCCC
Confidence 99997643
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00073 Score=58.11 Aligned_cols=117 Identities=11% Similarity=0.064 Sum_probs=75.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHH-HHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERE-TAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
.++||.|+|+ |.+|+.++..|+..|. +|++++++...... ...+............+..+ |.+ .++++|+
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~--d~~----~~~~aDi 90 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSK--DYS----VTANSKL 90 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECS--SGG----GGTTEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcC--CHH----HhCCCCE
Confidence 5689999997 9999999999999986 89998875321111 01111111011112222221 222 3788999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
||.+||...- ....-.+.++.|+.-...+.+.+.+++.. .++.+|.-
T Consensus 91 Vvi~aG~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP 138 (331)
T 4aj2_A 91 VIITAGARQQ--EGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138 (331)
T ss_dssp EEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred EEEccCCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 9999986432 22234568899999999999998887633 66666643
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00014 Score=63.10 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=58.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHH-HhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAH-LKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+|+||.|.||||++|+.+++.|.+... +++.+.+..+....... ...+. +. ....+.+.+ + +.++|+|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~----g~--~~~~~~~~~---~-~~~vDvV 72 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLR----GR--TNLKFVPPE---K-LEPADIL 72 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGT----TT--CCCBCBCGG---G-CCCCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhc----Cc--ccccccchh---H-hcCCCEE
Confidence 468999999999999999999997764 88887664322111000 00010 00 011122322 2 4789999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
|.+++.. .+..++..+.+.|+ ++|-.|+.
T Consensus 73 ~~a~g~~------------------~s~~~a~~~~~aG~-~VId~Sa~ 101 (345)
T 2ozp_A 73 VLALPHG------------------VFAREFDRYSALAP-VLVDLSAD 101 (345)
T ss_dssp EECCCTT------------------HHHHTHHHHHTTCS-EEEECSST
T ss_pred EEcCCcH------------------HHHHHHHHHHHCCC-EEEEcCcc
Confidence 9998642 13445556666774 68888875
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00016 Score=62.76 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=50.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHH-hhccCCCCCeEEEEccCCCHhHHHHH---h-cCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHL-KALEGADTRLRLFQIDLLDYDAIAAA---V-TGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~---~-~~~ 78 (323)
.+++|||+||+|.||..+++.+...|++|++++|++ +..+.+ +++. ... ..|..+.+..+.+ . .++
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~---~~~~~~~~~~g---~~~---~~~~~~~~~~~~~~~~~~~~~ 219 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA---EKCRFLVEELG---FDG---AIDYKNEDLAAGLKRECPKGI 219 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH---HHHHHHHHTTC---CSE---EEETTTSCHHHHHHHHCTTCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHHcC---CCE---EEECCCHHHHHHHHHhcCCCc
Confidence 468999999999999999999999999999998864 222333 3331 111 2344443332222 2 268
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||+++|.
T Consensus 220 d~vi~~~g~ 228 (336)
T 4b7c_A 220 DVFFDNVGG 228 (336)
T ss_dssp EEEEESSCH
T ss_pred eEEEECCCc
Confidence 999999863
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0002 Score=62.11 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=56.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 84 (323)
++++|.|+ |.+|+.++++|.+.|+ |++++++++.. + +.. .++.++.||.+|++.++++ ++++|.|+-+
T Consensus 116 ~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~---~-~~~-----~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~ 184 (336)
T 1lnq_A 116 RHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRK---K-VLR-----SGANFVHGDPTRVSDLEKANVRGARAVIVD 184 (336)
T ss_dssp CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHH---H-HHH-----TTCEEEESCTTSHHHHHHTCSTTEEEEEEC
T ss_pred CCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhh---h-HHh-----CCcEEEEeCCCCHHHHHhcChhhccEEEEc
Confidence 58999996 9999999999999999 99887764322 2 221 2688999999999999987 7789999876
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 185 ~ 185 (336)
T 1lnq_A 185 L 185 (336)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00084 Score=56.69 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=72.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHH--hh-ccCCCCCeEEE-EccCCCHhHHHHHhcCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHL--KA-LEGADTRLRLF-QIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~--~~-~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d 79 (323)
|||.|+|+ |+||+.++-.|+.++. ++.+++.++... .-+.+ .+ ....+...... ..|. + .++++|
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~-~G~a~DL~h~~~~~~~~~~i~~~~d~---~----~~~~aD 71 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLA-VGEAMDLAHAAAGIDKYPKIVGGADY---S----LLKGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHH-HHHHHHHHHHHGGGTCCCEEEEESCG---G----GGTTCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcc-hhhhhhhhcccccCCCCCeEecCCCH---H----HhCCCC
Confidence 68999995 9999999999998874 898887754211 11111 11 11111122222 2332 2 367899
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
+||-+||...-+ ...-.+.++.|..-.+.+.+.+.+++.+ .++.+|.
T Consensus 72 vVvitAG~prkp--GmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 72 IIVVTAGLARKP--GMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCCCS--SSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEEecCCCCCC--CCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 999999974332 2344568899999999999999888754 4555554
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.55 E-value=3.4e-05 Score=58.22 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=48.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
+++|+|+|+ |.+|+.++..|.+.|++|++.+|++.+... ..+.+ +.... .. +++.++++++|+||.+
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~--~a~~~-----~~~~~--~~---~~~~~~~~~~Divi~a 87 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRA--FAEKY-----EYEYV--LI---NDIDSLIKNNDVIITA 87 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHH--HHHHH-----TCEEE--EC---SCHHHHHHTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHH--HHHHh-----CCceE--ee---cCHHHHhcCCCEEEEe
Confidence 689999995 999999999999999999888886433221 12222 12211 12 2355667889999999
Q ss_pred ccC
Q 020608 85 ASP 87 (323)
Q Consensus 85 a~~ 87 (323)
.+.
T Consensus 88 t~~ 90 (144)
T 3oj0_A 88 TSS 90 (144)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00069 Score=59.02 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=61.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHh--cCCCE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAV--TGCTG 80 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~--~~~d~ 80 (323)
++|+|+||+|.||...++.+...|.+|++++++..+.+ .++++. .. .. .|..+.+ .+.++. .++|+
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~---~~~~~G---a~-~~--~~~~~~~~~~~v~~~~~~~g~D~ 236 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIA---LLKDIG---AA-HV--LNEKAPDFEATLREVMKAEQPRI 236 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHH---HHHHHT---CS-EE--EETTSTTHHHHHHHHHHHHCCCE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHcC---CC-EE--EECCcHHHHHHHHHHhcCCCCcE
Confidence 68999999999999999999999999999998654433 333331 11 12 2333322 233333 27999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
||++++.. .....++.++.. ++++.+++.
T Consensus 237 vid~~g~~------------------~~~~~~~~l~~~--G~iv~~G~~ 265 (349)
T 3pi7_A 237 FLDAVTGP------------------LASAIFNAMPKR--ARWIIYGRL 265 (349)
T ss_dssp EEESSCHH------------------HHHHHHHHSCTT--CEEEECCCS
T ss_pred EEECCCCh------------------hHHHHHhhhcCC--CEEEEEecc
Confidence 99998741 112344444444 488888765
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0001 Score=64.17 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=63.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHhc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAVT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~~--~~ 78 (323)
.+++|||+|++|.||..+++.+...|++|++++|++.+ .+.++++. .. . ..|.++.+ .+.++.. ++
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~---~~~~~~~g---a~-~--~~d~~~~~~~~~~~~~~~~~~~ 236 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDK---LRRAKALG---AD-E--TVNYTHPDWPKEVRRLTGGKGA 236 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHH---HHHHHHHT---CS-E--EEETTSTTHHHHHHHHTTTTCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHhcC---CC-E--EEcCCcccHHHHHHHHhCCCCc
Confidence 46799999999999999999999999999999886422 23333331 11 1 23555433 3333332 68
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
|+||++++. .. ....++.++.. ++++.+++.
T Consensus 237 d~vi~~~g~-~~-----------------~~~~~~~l~~~--G~~v~~g~~ 267 (343)
T 2eih_A 237 DKVVDHTGA-LY-----------------FEGVIKATANG--GRIAIAGAS 267 (343)
T ss_dssp EEEEESSCS-SS-----------------HHHHHHHEEEE--EEEEESSCC
T ss_pred eEEEECCCH-HH-----------------HHHHHHhhccC--CEEEEEecC
Confidence 999999972 10 22344444443 488888765
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00066 Score=58.23 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=69.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccC---CCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEG---ADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+||.|+|+ |.+|+.++..|+..+. ++.+++++..... .....+.+ ....+.+.. | + .++++++|+
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~--g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDv 75 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK--GDALDLEDAQAFTAPKKIYS-G--E----YSDCKDADL 75 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHH--HHHHHHHGGGGGSCCCEEEE-C--C----GGGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHH--HHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCCCE
Confidence 68999998 9999999999998876 8999987532221 11111111 112333332 2 2 234789999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
||.+++....+. ..-.+.+..|+.....+.+.+.+++.. .++.+|-
T Consensus 76 Vii~ag~~~~~g--~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 76 VVITAGAPQKPG--ESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp EEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred EEECCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 999998643221 122346788999999999998888633 5666543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00021 Score=64.63 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=57.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHh-hccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLK-ALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vi 82 (323)
.|+|+|.|+ |-+|++|++.|.+.|++|+++.+++. ..+.+. ++ ++..+.||-++++.|+++ ++++|.+|
T Consensus 3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~---~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Agi~~ad~~i 73 (461)
T 4g65_A 3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGD---RLRELQDKY-----DLRVVNGHASHPDVLHEAGAQDADMLV 73 (461)
T ss_dssp CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHH---HHHHHHHHS-----SCEEEESCTTCHHHHHHHTTTTCSEEE
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH---HHHHHHHhc-----CcEEEEEcCCCHHHHHhcCCCcCCEEE
Confidence 478999996 99999999999999999999987642 222222 22 578899999999999887 56889887
Q ss_pred Ecc
Q 020608 83 HLA 85 (323)
Q Consensus 83 h~a 85 (323)
-+.
T Consensus 74 a~t 76 (461)
T 4g65_A 74 AVT 76 (461)
T ss_dssp ECC
T ss_pred EEc
Confidence 543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.52 E-value=9.4e-05 Score=64.85 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=53.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
+.++|+|+|+ |.+|+.++..|...|.+|++++|++.+. +.+.+... ..+.. ...+.+++.+.+.++|+||+
T Consensus 166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~---~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~DvVI~ 236 (361)
T 1pjc_A 166 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERL---SYLETLFG--SRVEL---LYSNSAEIETAVAEADLLIG 236 (361)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHG--GGSEE---EECCHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHH---HHHHHhhC--ceeEe---eeCCHHHHHHHHcCCCEEEE
Confidence 4589999998 9999999999999999999999865332 22222111 01211 12345567777789999999
Q ss_pred cccC
Q 020608 84 LASP 87 (323)
Q Consensus 84 ~a~~ 87 (323)
+++.
T Consensus 237 ~~~~ 240 (361)
T 1pjc_A 237 AVLV 240 (361)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 9875
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0017 Score=55.68 Aligned_cols=116 Identities=10% Similarity=-0.025 Sum_probs=74.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHH-HHHhhccCCCCCeEE-EEccCCCHhHHHHHhcCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERET-AHLKALEGADTRLRL-FQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~-~~~Dl~~~~~~~~~~~~~d 79 (323)
.++||.|+|+ |.+|+.++..|+..|. +|++++++....... ..+............ ...|..+ ++++|
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-------~~daD 91 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-------SAGSK 91 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-------CSSCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-------hCCCC
Confidence 3579999998 9999999999999986 899998754221111 001111000111122 2344422 67899
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
+||-+||...-+. ..-.+.+..|+.-...+.+.+.+++.. .++.+|.-
T Consensus 92 iVIitaG~p~kpG--~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP 140 (330)
T 3ldh_A 92 LVVITAGARQQEG--ESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140 (330)
T ss_dssp EEEECCSCCCCSS--CCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred EEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence 9999998743222 223457888999999999998777533 56666543
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0014 Score=56.00 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=71.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHH-HHHhhc-cCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERET-AHLKAL-EGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|||.|+|+ |.+|+.++..|+..|. +|+++++++...... ..+.+. ............| + .+.++++|+|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~aDvV 73 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTEDSDVC 73 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhCCCCEE
Confidence 58999996 9999999999999886 899998876432211 011111 0001122322112 2 2357789999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
|.+||...-+. ..-.+.+..|+.-...+.+.+.+++.+ .++.+|.
T Consensus 74 ii~ag~~~kpG--~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 74 IITAGLPRSPG--MSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp EECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred EECCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 99998642221 223467888999999999999887643 5566554
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0003 Score=61.49 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=50.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHh-cCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAV-TGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~-~~~d 79 (323)
.+++|||+||+|.||..+++.+...|.+|++++|++. ..+.++++. ... . .|..+.+ .+.++. .++|
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~---~~~~~~~lG---a~~-~--~~~~~~~~~~~~~~~~~~g~D 237 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTG---KCEACERLG---AKR-G--INYRSEDFAAVIKAETGQGVD 237 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH---HHHHHHHHT---CSE-E--EETTTSCHHHHHHHHHSSCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHhcC---CCE-E--EeCCchHHHHHHHHHhCCCce
Confidence 4679999999999999999999999999999988643 233333332 121 1 2333332 222222 3689
Q ss_pred EEEEcccC
Q 020608 80 GVFHLASP 87 (323)
Q Consensus 80 ~Vih~a~~ 87 (323)
+||+++|.
T Consensus 238 vvid~~g~ 245 (353)
T 4dup_A 238 IILDMIGA 245 (353)
T ss_dssp EEEESCCG
T ss_pred EEEECCCH
Confidence 99999974
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00023 Score=62.49 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=51.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC--HhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD--YDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~d~V 81 (323)
++++|||+|+ |.||..+++.+...|.+|++++++....+..+.++++ +...+ | .+ .+.+.+.-.++|+|
T Consensus 180 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~-----ga~~v--~-~~~~~~~~~~~~~~~d~v 250 (366)
T 2cdc_A 180 NCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET-----KTNYY--N-SSNGYDKLKDSVGKFDVI 250 (366)
T ss_dssp TTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH-----TCEEE--E-CTTCSHHHHHHHCCEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh-----CCcee--c-hHHHHHHHHHhCCCCCEE
Confidence 3889999999 9999999999998999999999875211222333333 23333 4 43 12232212579999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|++++.
T Consensus 251 id~~g~ 256 (366)
T 2cdc_A 251 IDATGA 256 (366)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999974
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00077 Score=57.50 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=66.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCC---CCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGA---DTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|||.|+|+ |.+|+.++..|+..|+ +|+++++++.... .....+... .....+... +. +.++++|+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~--~~~~~l~~~~~~~~~~~i~~~---~~----~a~~~aDv 70 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQ--AEAEDIAHAAPVSHGTRVWHG---GH----SELADAQV 70 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHH--HHHHHHTTSCCTTSCCEEEEE---CG----GGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHH--HHHHhhhhhhhhcCCeEEEEC---CH----HHhCCCCE
Confidence 58999998 9999999999999998 9999988642111 112222111 112232222 22 24788999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
||.+++....+. ..-.+.+..|+.....+++.+.+.+.. .++.+|-
T Consensus 71 VIi~~~~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tN 117 (304)
T 2v6b_A 71 VILTAGANQKPG--ESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSN 117 (304)
T ss_dssp EEECC--------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSS
T ss_pred EEEcCCCCCCCC--CcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 999997532211 122346678888888999888776533 4555443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00048 Score=59.66 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=51.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH---hHHHHHhc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY---DAIAAAVT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~--~~ 78 (323)
.+++|||+||+|.||..+++.+...|.+|+++++++ +..+.++++. ... . .|..+. +.+.+... ++
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~---~~~~~~~~~g---a~~-~--~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD---EKLKIAKEYG---AEY-L--INASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSH---HHHHHHHHTT---CSE-E--EETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHcC---CcE-E--EeCCCchHHHHHHHHhCCCCc
Confidence 467999999999999999999999999999998853 2333344332 121 2 233332 33333332 68
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||+++|.
T Consensus 219 D~vid~~g~ 227 (334)
T 3qwb_A 219 DASFDSVGK 227 (334)
T ss_dssp EEEEECCGG
T ss_pred eEEEECCCh
Confidence 999999974
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.47 E-value=2.3e-05 Score=66.47 Aligned_cols=80 Identities=6% Similarity=0.091 Sum_probs=50.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCC-CCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGAD-TRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
++++++++|||+ |.+|++++..|++.| +|++.+|+.++... ..+.+.... ... .+.+|+.+. .+.+.++|+
T Consensus 125 ~l~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~~~~~~--l~~~~~~~~~~~~-~~~~d~~~~---~~~~~~~Di 196 (287)
T 1nvt_A 125 RVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEA--LAKEIAEKLNKKF-GEEVKFSGL---DVDLDGVDI 196 (287)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHH--HHHHHHHHHTCCH-HHHEEEECT---TCCCTTCCE
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCHHHHHH--HHHHHhhhccccc-ceeEEEeeH---HHhhCCCCE
Confidence 356799999998 499999999999999 99999886432222 111111000 000 011233331 334567899
Q ss_pred EEEcccCCc
Q 020608 81 VFHLASPCI 89 (323)
Q Consensus 81 Vih~a~~~~ 89 (323)
||++++...
T Consensus 197 lVn~ag~~~ 205 (287)
T 1nvt_A 197 IINATPIGM 205 (287)
T ss_dssp EEECSCTTC
T ss_pred EEECCCCCC
Confidence 999998754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00025 Score=61.81 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=51.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHh--cC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAV--TG 77 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~--~~ 77 (323)
.+++|||+|++|.||..+++.+... |++|+++++++. ..+.++++. ... ..|..+.+ .+.++. .+
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~---~~~~~~~~g---~~~---~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE---AVEAAKRAG---ADY---VINASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH---HHHHHHHHT---CSE---EEETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH---HHHHHHHhC---CCE---EecCCCccHHHHHHHHhcCCC
Confidence 4679999999999999999999998 999999987642 223333331 121 22444433 344544 36
Q ss_pred CCEEEEcccC
Q 020608 78 CTGVFHLASP 87 (323)
Q Consensus 78 ~d~Vih~a~~ 87 (323)
+|+||++++.
T Consensus 241 ~d~vi~~~g~ 250 (347)
T 1jvb_A 241 VDAVIDLNNS 250 (347)
T ss_dssp EEEEEESCCC
T ss_pred ceEEEECCCC
Confidence 8999999974
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00043 Score=60.13 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=51.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHhc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAVT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~~--~~ 78 (323)
.+++|||+||+|.||..+++.+...|.+|++++++..+.+.. +++. ... . .|..+.+ .+.++.. ++
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~---~~lg---a~~-~--~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEEL---LRLG---AAY-V--IDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH---HHHT---CSE-E--EETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH---HhCC---CcE-E--EeCCcccHHHHHHHHhCCCCC
Confidence 467999999999999999999988999999999876554433 2221 121 1 2333332 2333332 68
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||+++|.
T Consensus 215 Dvvid~~g~ 223 (340)
T 3gms_A 215 DAAIDSIGG 223 (340)
T ss_dssp EEEEESSCH
T ss_pred cEEEECCCC
Confidence 999999974
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00024 Score=61.30 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=51.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHhc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAVT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~~--~~ 78 (323)
.+++|||+||+|.||..+++.+...|.+|+++++++. ..+.++++. .. .. .|..+.+ .+.+... ++
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~---~~~~~~~~G---a~-~~--~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPE---KAAHAKALG---AW-ET--IDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHH---HHHHHHHHT---CS-EE--EETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHHHHcC---CC-EE--EeCCCccHHHHHHHHhCCCCc
Confidence 4679999999999999999999999999999988542 233333331 12 12 2333332 3333333 68
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||++++.
T Consensus 211 Dvvid~~g~ 219 (325)
T 3jyn_A 211 PVVYDGVGQ 219 (325)
T ss_dssp EEEEESSCG
T ss_pred eEEEECCCh
Confidence 999999974
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=7.6e-05 Score=57.18 Aligned_cols=74 Identities=18% Similarity=0.109 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHH-HHHhhccCCCCCeEEEEccCCCH--hHHHHHhc------CCCEEEEc
Q 020608 14 SGCIGSWLVSLLLERRYTVHATVKNLSDERET-AHLKALEGADTRLRLFQIDLLDY--DAIAAAVT------GCTGVFHL 84 (323)
Q Consensus 14 tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~------~~d~Vih~ 84 (323)
+|.++.+.++.|++.|++|++..|+....... ...+.+...+.++..+.+|++++ ++++++++ +-|++|||
T Consensus 25 s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVnn 104 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHC 104 (157)
T ss_dssp EBCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEEC
T ss_pred cCCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 46788999999999999999887765332110 01111122234577788999998 88776654 22999999
Q ss_pred ccC
Q 020608 85 ASP 87 (323)
Q Consensus 85 a~~ 87 (323)
||.
T Consensus 105 Agg 107 (157)
T 3gxh_A 105 LAN 107 (157)
T ss_dssp SBS
T ss_pred CCC
Confidence 985
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00048 Score=59.86 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=51.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH-hHHHHHhc--CCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY-DAIAAAVT--GCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~--~~d~ 80 (323)
.+++|||+||+|.||..+++.+...|.+|++++++..+.+ .++++. .. ..+..+ .+. +.+.++.. ++|+
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~---~~~~~g---a~-~v~~~~-~~~~~~v~~~~~~~g~Dv 230 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE---FVKSVG---AD-IVLPLE-EGWAKAVREATGGAGVDM 230 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH---HHHHHT---CS-EEEESS-TTHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH---HHHhcC---Cc-EEecCc-hhHHHHHHHHhCCCCceE
Confidence 4679999999999999999999999999999998654433 333331 11 223333 232 23334333 5899
Q ss_pred EEEcccC
Q 020608 81 VFHLASP 87 (323)
Q Consensus 81 Vih~a~~ 87 (323)
||+++|.
T Consensus 231 vid~~g~ 237 (342)
T 4eye_A 231 VVDPIGG 237 (342)
T ss_dssp EEESCC-
T ss_pred EEECCch
Confidence 9999974
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00044 Score=61.00 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=54.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|+|+|+|+ |.+|+.+++.+.+.|++|++++..+..... ++ --.++..|..|.+.+.++.+.+|+|.
T Consensus 10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~-----~~-----ad~~~~~~~~d~~~l~~~~~~~dvi~ 78 (377)
T 3orq_A 10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCR-----YV-----AHEFIQAKYDDEKALNQLGQKCDVIT 78 (377)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTG-----GG-----SSEEEECCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh-----hh-----CCEEEECCCCCHHHHHHHHHhCCcce
Confidence 45789999995 899999999999999999999876532211 11 12456799999999999998899874
Q ss_pred E
Q 020608 83 H 83 (323)
Q Consensus 83 h 83 (323)
-
T Consensus 79 ~ 79 (377)
T 3orq_A 79 Y 79 (377)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.44 E-value=9.6e-05 Score=64.57 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=49.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|++++|+|.|.|+ |.+|+.++..|++.|++|++.+|++...+............+++. +...+.-..+++++++++|+
T Consensus 25 m~~~~mkI~VIGa-G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~-l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 25 MEPFKHPIAILGA-GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYP-FPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp --CCCSCEEEECC-SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCC-CCTTEEEESCHHHHHTTCCE
T ss_pred ccccCCeEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCc-cCCCeEEECCHHHHHhcCCE
Confidence 4555789999995 999999999999999999999986432222111100000011111 11111111245667788999
Q ss_pred EEEcc
Q 020608 81 VFHLA 85 (323)
Q Consensus 81 Vih~a 85 (323)
||-+.
T Consensus 103 VilaV 107 (356)
T 3k96_A 103 ILIVV 107 (356)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98765
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00065 Score=56.22 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=64.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCc-----------------HHHHHHHhhccCCCC--CeEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSD-----------------ERETAHLKALEGADT--RLRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~ 63 (323)
+.++|+|.|+ |.+|+++++.|+..|. ++++++++.-. .......+.+...++ +++.+..
T Consensus 27 ~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 105 (251)
T 1zud_1 27 LDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ 105 (251)
T ss_dssp HTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4679999997 7799999999999997 67777543210 111112222222223 3455555
Q ss_pred cCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+++ .+.+.++++++|+||.+... . ..-..+.++|.+.++ .+|..+..
T Consensus 106 ~~~-~~~~~~~~~~~DvVi~~~d~---------~--------~~r~~l~~~~~~~~~-p~i~~~~~ 152 (251)
T 1zud_1 106 RLT-GEALKDAVARADVVLDCTDN---------M--------ATRQEINAACVALNT-PLITASAV 152 (251)
T ss_dssp CCC-HHHHHHHHHHCSEEEECCSS---------H--------HHHHHHHHHHHHTTC-CEEEEEEE
T ss_pred cCC-HHHHHHHHhcCCEEEECCCC---------H--------HHHHHHHHHHHHhCC-CEEEEecc
Confidence 554 35677788899999988521 1 122345556777764 57776554
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00035 Score=62.54 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=54.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+++|+|.|+ |.+|+.+++.+.+.|++|++++.++..... . + --..+..|..|.+.+.++.+++|+|+
T Consensus 33 ~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~-~----~-----ad~~~~~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 33 LPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPAG-A----V-----ADRHLRAAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHHH-H----H-----SSEEECCCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCchh-h----h-----CCEEEECCcCCHHHHHHHHhcCCEEE
Confidence 45789999996 899999999999999999998765433221 1 1 11356789999999999999999987
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00023 Score=60.70 Aligned_cols=74 Identities=19% Similarity=0.111 Sum_probs=51.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+++|||+|++|.+|..+++.+...|.+|+++++++.+.+ .++++. .. . ..|..+.+++.+.+.++|+||+
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~---~~~~~g---a~-~--~~~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA---LPLALG---AE-E--AATYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH---HHHHTT---CS-E--EEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHhcC---CC-E--EEECCcchhHHHHhcCceEEEE
Confidence 4679999999999999999999999999999998654332 222321 11 1 2344441334444478999999
Q ss_pred cccC
Q 020608 84 LASP 87 (323)
Q Consensus 84 ~a~~ 87 (323)
++.
T Consensus 196 -~g~ 198 (302)
T 1iz0_A 196 -VRG 198 (302)
T ss_dssp -CSC
T ss_pred -CCH
Confidence 863
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00033 Score=61.73 Aligned_cols=76 Identities=20% Similarity=0.074 Sum_probs=54.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+++|+|+|+ |.||+.+++.+...|.+|++++|++.+ .+.+++.. +..+ ..+..+.+++.+++.++|+||
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~---l~~~~~~~--g~~~---~~~~~~~~~l~~~l~~aDvVi 236 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDK---LRQLDAEF--CGRI---HTRYSSAYELEGAVKRADLVI 236 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHT--TTSS---EEEECCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHH---HHHHHHhc--CCee---EeccCCHHHHHHHHcCCCEEE
Confidence 46789999998 999999999999999999999886422 22222210 1122 123345667788888999999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+++.
T Consensus 237 ~~~~~ 241 (377)
T 2vhw_A 237 GAVLV 241 (377)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 98864
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0032 Score=54.24 Aligned_cols=114 Identities=15% Similarity=0.091 Sum_probs=70.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHH-HHHhh-cc--CCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERET-AHLKA-LE--GADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~~-~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
++||.|+|| |.+|+.++..|+..|+ +|++.+++....+.. ..+.. .. ....++.. ..| + +.++++|
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d------~-~al~~aD 84 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-ENN------Y-EYLQNSD 84 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-ESC------G-GGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-CCC------H-HHHCCCC
Confidence 368999998 9999999999999998 999998876543321 11111 11 01112221 133 2 3478899
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
+||-+++...-+.. .-......|+.-...+.+...+...+ .++++|..
T Consensus 85 ~VI~avg~p~k~g~--tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 133 (328)
T 2hjr_A 85 VVIITAGVPRKPNM--TRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNP 133 (328)
T ss_dssp EEEECCSCCCCTTC--CSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred EEEEcCCCCCCCCC--chhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 99999975322111 11235667888888888887765433 44555443
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0019 Score=55.45 Aligned_cols=117 Identities=12% Similarity=0.055 Sum_probs=71.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHH-HHHhhc-c--CCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERET-AHLKAL-E--GADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~~~-~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
.++||.|+|+ |.+|+.++..|+..|+ +|+++++++...+.. ..+... . ....++.. ..| + +.++++
T Consensus 3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d------~-~al~~a 73 (322)
T 1t2d_A 3 PKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNT------Y-DDLAGA 73 (322)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECC------G-GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE-CCC------H-HHhCCC
Confidence 4679999998 9999999999999998 988888876433221 111111 0 01112221 133 2 347899
Q ss_pred CEEEEcccCCccCCCC---CchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 79 TGVFHLASPCIVDKVE---DPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
|+||-+++...-+... ..-......|+.-.+.+.+.+.+...+ .++++|..
T Consensus 74 D~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 128 (322)
T 1t2d_A 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP 128 (322)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred CEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 9999999753221110 002345677888888888887766533 55555443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00044 Score=55.88 Aligned_cols=66 Identities=24% Similarity=0.200 Sum_probs=46.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+|.|+| +|.+|+.+++.|++.|++|++.+|++. ..+.+ ... ++... ++.++++++|+||.
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~---~~~~~---~~~--g~~~~--------~~~~~~~~~DvVi~ 89 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPK---RTARL---FPS--AAQVT--------FQEEAVSSPEVIFV 89 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHH---HHHHH---SBT--TSEEE--------EHHHHTTSCSEEEE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHH---HHHHH---HHc--CCcee--------cHHHHHhCCCEEEE
Confidence 457899999 799999999999999999999988642 22222 111 33321 24566788999998
Q ss_pred ccc
Q 020608 84 LAS 86 (323)
Q Consensus 84 ~a~ 86 (323)
+..
T Consensus 90 av~ 92 (215)
T 2vns_A 90 AVF 92 (215)
T ss_dssp CSC
T ss_pred CCC
Confidence 874
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0013 Score=56.61 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=59.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCC---CcHHHH-HHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNL---SDERET-AHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~---~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
.|++|.|.||||++|+.|++.|.+. .+++..+..+. +..... +....+... .+..+... .+.+ ++++++
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~-~~~~v~~~--~~~~---~~~~~~ 76 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGI-VELPLQPM--SDIS---EFSPGV 76 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTT-CCCBEEEE--SSGG---GTCTTC
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCc-cceeEecc--CCHH---HHhcCC
Confidence 4689999999999999999999985 56888775543 211111 111111110 02222221 0222 223689
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSIS 130 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (323)
|+||-|.+. ..+..++..+.+.|+ ++|=.|+..
T Consensus 77 Dvvf~a~p~------------------~~s~~~~~~~~~~g~-~vIDlSa~f 109 (337)
T 3dr3_A 77 DVVFLATAH------------------EVSHDLAPQFLEAGC-VVFDLSGAF 109 (337)
T ss_dssp SEEEECSCH------------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CEEEECCCh------------------HHHHHHHHHHHHCCC-EEEEcCCcc
Confidence 999988753 123445555566664 788888863
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0004 Score=60.62 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=59.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHH-hhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHL-KALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|.|.||+|++|+.+++.|.+... +++++.+..+........ ..+.. .+ ..|+.-.+ ++.++++|+||
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~---~v---~~dl~~~~--~~~~~~vDvVf 87 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRA---QK---LPTLVSVK--DADFSTVDAVF 87 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTT---SC---CCCCBCGG--GCCGGGCSEEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcC---cc---cccceecc--hhHhcCCCEEE
Confidence 46899999999999999999998764 888887643222111111 11111 10 13433222 33456899999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccc
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSIS 130 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (323)
-|++... +...+..+ +.|+ ++|-.|+..
T Consensus 88 ~atp~~~------------------s~~~a~~~-~aG~-~VId~sa~~ 115 (359)
T 1xyg_A 88 CCLPHGT------------------TQEIIKEL-PTAL-KIVDLSADF 115 (359)
T ss_dssp ECCCTTT------------------HHHHHHTS-CTTC-EEEECSSTT
T ss_pred EcCCchh------------------HHHHHHHH-hCCC-EEEECCccc
Confidence 9986420 23345555 5564 688888753
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00046 Score=60.15 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=60.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHhc--C
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAVT--G 77 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~~--~ 77 (323)
.+.+|||+|+ |.||..+++.+...|+ +|++++|++ +..+.++++. ... ..|..+.+ .+.++.. +
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~---~~~~~~~~~G-----a~~-~~~~~~~~~~~~v~~~~~g~g 236 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSD---FRRELAKKVG-----ADY-VINPFEEDVVKEVMDITDGNG 236 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH---HHHHHHHHHT-----CSE-EECTTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH---HHHHHHHHhC-----CCE-EECCCCcCHHHHHHHHcCCCC
Confidence 4678999999 9999999999999999 999998863 2223333331 111 12443322 2333332 6
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+|+||++++.. ......++.++.. ++++.+++.
T Consensus 237 ~D~vid~~g~~-----------------~~~~~~~~~l~~~--G~iv~~g~~ 269 (348)
T 2d8a_A 237 VDVFLEFSGAP-----------------KALEQGLQAVTPA--GRVSLLGLY 269 (348)
T ss_dssp EEEEEECSCCH-----------------HHHHHHHHHEEEE--EEEEECCCC
T ss_pred CCEEEECCCCH-----------------HHHHHHHHHHhcC--CEEEEEccC
Confidence 89999998741 1223344444443 488888765
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0016 Score=56.04 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccC---CCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEG---ADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
+.+||.|+|+ |.+|+.++..|+..+. ++.+++++..... .....+.+ ....+.+.. | + .++++++
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~--g~~~dl~~~~~~~~~~~i~~-~--~----~~a~~~a 77 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTK--GDAIDLSNALPFTSPKKIYS-A--E----YSDAKDA 77 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHH--HHHHHHHTTGGGSCCCEEEE-C--C----GGGGGGC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhH--HHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCC
Confidence 4579999998 9999999999998875 8999887532221 11222211 112333332 2 2 2347789
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
|+||.+++....+ ...-...+..|+.....+.+.+.+++.. .++.+|-
T Consensus 78 DvVii~ag~~~k~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 78 DLVVITAGAPQKP--GETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp SEEEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 9999999864221 1223456778999999999998777633 6666544
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0028 Score=54.34 Aligned_cols=117 Identities=19% Similarity=0.099 Sum_probs=71.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHH-HHhhc---cCCCCCeEEEEccCCCHhHHHHHh
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETA-HLKAL---EGADTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
|+ ++++|.|+|+ |.+|+.++..|++.|+ +|+++++++....... .+... .....++.. ..| + +.+
T Consensus 1 M~-~~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d------~-~a~ 70 (317)
T 2ewd_A 1 MI-ERRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDD------Y-ADI 70 (317)
T ss_dssp CC-CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESC------G-GGG
T ss_pred CC-CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCC------H-HHh
Confidence 55 4578999997 9999999999999998 9999988764433210 11110 000112221 122 2 346
Q ss_pred cCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 76 TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 76 ~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
+++|+||-+++...-+.. .-.+.+..|......+++...+.... .++.+|..
T Consensus 71 ~~aDiVi~avg~p~~~g~--~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp 123 (317)
T 2ewd_A 71 SGSDVVIITASIPGRPKD--DRSELLFGNARILDSVAEGVKKYCPNAFVICITNP 123 (317)
T ss_dssp TTCSEEEECCCCSSCCSS--CGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred CCCCEEEEeCCCCCCCCC--cHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence 789999999975432221 12234556777777777777655423 55556654
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00015 Score=60.97 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=48.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+++|+|+ |.+|++++..|++.|.+|++.+|+.++.... .+.+.... .+.. .|+ +++.+ .++|+||
T Consensus 117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l--~~~~~~~~-~~~~--~~~---~~~~~--~~~DivI 185 (272)
T 1p77_A 117 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKEL--AERFQPYG-NIQA--VSM---DSIPL--QTYDLVI 185 (272)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHH--HHHHGGGS-CEEE--EEG---GGCCC--SCCSEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHHccccC-CeEE--eeH---HHhcc--CCCCEEE
Confidence 46789999997 8899999999999999999999975332221 12221111 2222 232 11110 3789999
Q ss_pred EcccCC
Q 020608 83 HLASPC 88 (323)
Q Consensus 83 h~a~~~ 88 (323)
++++..
T Consensus 186 n~t~~~ 191 (272)
T 1p77_A 186 NATSAG 191 (272)
T ss_dssp ECCCC-
T ss_pred ECCCCC
Confidence 999864
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0006 Score=59.15 Aligned_cols=97 Identities=16% Similarity=0.080 Sum_probs=61.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHhcCCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAVTGCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~~~~d~ 80 (323)
.+++|||+|+ |.||..+++.+...|.+|++++|++. ..+.++++. .. ...|..+.+ .+.++..++|+
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~---~~~~~~~lG-----a~-~~~d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDE---KLELAKELG-----AD-LVVNPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHTT-----CS-EEECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHCC-----CC-EEecCCCccHHHHHHHHhCCCCE
Confidence 4679999999 77999999999999999999987642 223333331 11 123554432 23333357999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
||++++.. ......++.++.. ++++.+++.
T Consensus 234 vid~~g~~-----------------~~~~~~~~~l~~~--G~~v~~g~~ 263 (339)
T 1rjw_A 234 AVVTAVSK-----------------PAFQSAYNSIRRG--GACVLVGLP 263 (339)
T ss_dssp EEESSCCH-----------------HHHHHHHHHEEEE--EEEEECCCC
T ss_pred EEECCCCH-----------------HHHHHHHHHhhcC--CEEEEeccc
Confidence 99998741 1223344444443 488887764
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00057 Score=57.98 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=31.0
Q ss_pred CCce-EEEecc-c-----------------cHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEV-VCVTGG-S-----------------GCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~-vlItGa-t-----------------G~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+++ ||||+| | |-.|.+++++++++|++|+.+.|..
T Consensus 35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~ 89 (313)
T 1p9o_A 35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR 89 (313)
T ss_dssp TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCC
Confidence 5677 999854 5 8899999999999999999998854
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.002 Score=55.02 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=68.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHH-HHh-hccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETA-HLK-ALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
||+|.|+| +|.+|+.++..|++.| ++|++++|++....... .+. ........+.....| . +.++++|+
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d---~----~~~~~aDv 72 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---W----AALADADV 72 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---G----GGGTTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCC---H----HHhCCCCE
Confidence 47999999 6999999999999999 79999988643222211 111 111111123332233 2 34678999
Q ss_pred EEEcccCCcc----CCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEec
Q 020608 81 VFHLASPCIV----DKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTS 127 (323)
Q Consensus 81 Vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 127 (323)
||-+++.... +. ..-...+..|+.-...+++.+.+...+ .++.+|
T Consensus 73 Viiav~~~~~~~~~~g--~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 73 VISTLGNIKLQQDNPT--GDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp EEECCSCGGGTC---------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEecCCcccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 9999875331 11 112235667888888888887776533 444443
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0002 Score=61.37 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+||+|.|.|+ |.+|+.++..|++.|++|++++|++
T Consensus 2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 2 NAMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCH
Confidence 4679999995 9999999999999999999998864
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=59.09 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=32.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEE-EecCCCc
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHA-TVKNLSD 41 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~ 41 (323)
|+||+|.|+| +|.+|+.++..|++.|++|++ .+|++..
T Consensus 21 m~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~ 59 (220)
T 4huj_A 21 QSMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPAS 59 (220)
T ss_dssp GGSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGG
T ss_pred hcCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHH
Confidence 4578999999 799999999999999999998 7776543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0025 Score=57.44 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=31.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
.+++|||+||+|.||..+++.+...|.+|+++.++
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~ 254 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSS 254 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46799999999999999999999999999998874
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0037 Score=53.57 Aligned_cols=106 Identities=12% Similarity=0.039 Sum_probs=65.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHH--HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDER--ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
++|+|.|+|+ |.+|+.++..|++.|+ +|++++|++.... .......+.. .....+... ++.+ .++++|
T Consensus 6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~--~~~~----~~~~aD 77 (319)
T 1lld_A 6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSF-YPTVSIDGS--DDPE----ICRDAD 77 (319)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGG-STTCEEEEE--SCGG----GGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhh-cCCeEEEeC--CCHH----HhCCCC
Confidence 4579999997 9999999999999998 9999988642221 1111111111 012222222 1222 367899
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 119 (323)
+||-+++....+ ...-...+..|+.....+++...+.+
T Consensus 78 ~Vii~v~~~~~~--g~~r~~~~~~n~~~~~~~~~~i~~~~ 115 (319)
T 1lld_A 78 MVVITAGPRQKP--GQSRLELVGATVNILKAIMPNLVKVA 115 (319)
T ss_dssp EEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998653221 12334567778888888888876654
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0039 Score=53.25 Aligned_cols=114 Identities=15% Similarity=-0.006 Sum_probs=70.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCCCcHHHHHH-Hhh-ccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAH-LKA-LEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~-~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|||.|+|+ |.+|+.++..|++. |++|+++++++...+.... +.. .........+... +|. ++ ++++|+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d~---~~-l~~aDvV 73 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY---AD-TANSDIV 73 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG---GG-GTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC--CCH---HH-HCCCCEE
Confidence 58999998 99999999999985 7999999998654332211 111 0000011121110 222 23 6789999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
|-+++.... ........+..|+.-...+.+.+.+.+.+ .++.+|.
T Consensus 74 iiav~~p~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 74 IITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp EECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred EEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 999974221 11123456778888888898888776533 5555543
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.003 Score=53.91 Aligned_cols=111 Identities=17% Similarity=0.156 Sum_probs=72.4
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhccCC---CCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKALEGA---DTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|||.|+|+ |.+|+.++..|+..+ .++++++++....+ .....+.+. .....+.. + +. ++++++|+
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~--g~a~dl~~~~~~~~~~~v~~-~--~~----~a~~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQ--AHAEDILHATPFAHPVWVWA-G--SY----GDLEGARA 70 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHH--HHHHHHHTTGGGSCCCEEEE-C--CG----GGGTTEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHH--HHHHHHHHhHhhcCCeEEEE-C--CH----HHhCCCCE
Confidence 58999998 999999999999887 58999987632221 112222211 12333332 2 22 24789999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
||.+++....+. ..-...+..|+.-...+.+.+.+++.. .++.+|-
T Consensus 71 Vii~ag~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 71 VVLAAGVAQRPG--ETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp EEECCCCCCCTT--CCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEECCCCCCCCC--cCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 999998643221 223456788999999999998877633 5666543
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0016 Score=57.68 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=53.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|+|+|+|+ |.+|+.+++.+.+.|++|++++.++..... ++ --..+..|..|.+.+.++++.+|+|.
T Consensus 12 ~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~~~~~~-----~~-----ad~~~~~~~~d~~~l~~~~~~~dvI~ 80 (389)
T 3q2o_A 12 LPGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTKNSPCA-----QV-----ADIEIVASYDDLKAIQHLAEISDVVT 80 (389)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTT-----TT-----CSEEEECCTTCHHHHHHHHHTCSEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchH-----Hh-----CCceEecCcCCHHHHHHHHHhCCEee
Confidence 46789999995 889999999999999999999765432211 11 11345689999999999999999874
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=9.1e-05 Score=68.25 Aligned_cols=73 Identities=16% Similarity=0.085 Sum_probs=44.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHH-HhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAA-AVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~V 81 (323)
+++++++|||| |.+|++++..|++.|++|+++.|+..+.. +..+.+. ..+. ++.+ +.+ ....+|+|
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~--~la~~~~---~~~~----~~~d---l~~~~~~~~Dil 428 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERAL--ELAEAIG---GKAL----SLTD---LDNYHPEDGMVL 428 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHH--HHHHHTT---C-CE----ETTT---TTTC--CCSEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHcC---Ccee----eHHH---hhhccccCceEE
Confidence 35678999999 79999999999999999999988643222 2222221 1111 1222 111 12358999
Q ss_pred EEcccCC
Q 020608 82 FHLASPC 88 (323)
Q Consensus 82 ih~a~~~ 88 (323)
||+++..
T Consensus 429 VN~agvg 435 (523)
T 2o7s_A 429 ANTTSMG 435 (523)
T ss_dssp EECSSTT
T ss_pred EECCCCC
Confidence 9999864
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0012 Score=57.56 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=29.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC-CEEEEEecC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKN 38 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~ 38 (323)
+++|.|.||||++|+.+++.|++.+ .+|+++.++
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s 42 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAAS 42 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEEC
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 4699999999999999999998765 588888764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00056 Score=59.96 Aligned_cols=97 Identities=21% Similarity=0.210 Sum_probs=61.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHh-cCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAV-TGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~-~~~d 79 (323)
.+++|||+||+|.||..+++.+...|++|+++++++ +..+.++++. .. ..+ |..+.+ .+.+.. .++|
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~---~~~~~~~~~G---a~-~~~--~~~~~~~~~~~~~~~~~g~D 233 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD---EKSAFLKSLG---CD-RPI--NYKTEPVGTVLKQEYPEGVD 233 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSH---HHHHHHHHTT---CS-EEE--ETTTSCHHHHHHHHCTTCEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCH---HHHHHHHHcC---Cc-EEE--ecCChhHHHHHHHhcCCCCC
Confidence 467999999999999999999999999999998853 2223333331 12 122 333322 222222 2689
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+||++++. . .....++.++.. ++++.+++.
T Consensus 234 ~vid~~g~----------~--------~~~~~~~~l~~~--G~iv~~g~~ 263 (362)
T 2c0c_A 234 VVYESVGG----------A--------MFDLAVDALATK--GRLIVIGFI 263 (362)
T ss_dssp EEEECSCT----------H--------HHHHHHHHEEEE--EEEEECCCG
T ss_pred EEEECCCH----------H--------HHHHHHHHHhcC--CEEEEEeCC
Confidence 99999863 0 122344555544 489988876
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00028 Score=59.23 Aligned_cols=70 Identities=9% Similarity=0.093 Sum_probs=50.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++++++|+|+ |.+|+.++..|++.|. +|++..|+.++.. .+.. ++.. ...+++.+++.++|+|
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~------~la~---~~~~-----~~~~~~~~~~~~aDiV 179 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFN------NWSL---NINK-----INLSHAESHLDEFDII 179 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGT------TCCS---CCEE-----ECHHHHHHTGGGCSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHH------HHHH---hccc-----ccHhhHHHHhcCCCEE
Confidence 35789999996 8999999999999998 8999988753322 1111 1221 1345677778889999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|++...
T Consensus 180 InaTp~ 185 (277)
T 3don_A 180 INTTPA 185 (277)
T ss_dssp EECCC-
T ss_pred EECccC
Confidence 999754
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00035 Score=57.37 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=28.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEE-ecC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHAT-VKN 38 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~-~r~ 38 (323)
+|+||.|+|+ |.+|+.+++.+.+++.++++. +|+
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~ 36 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENT 36 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecC
Confidence 5789999999 999999999999987777664 444
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00055 Score=57.81 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=32.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
++++|.|.|+ |.+|+.++..|++.|++|++.+|++.
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~ 38 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTD 38 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5689999985 99999999999999999999988753
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0019 Score=53.06 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=46.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----CCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-----GCT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d 79 (323)
+||.|+|++|-+|+.+++.+.+. ++++++..+..++... .+.. ..+ +..|++.++...+.+. +++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~--~~~~----~~D---vvIDfT~p~a~~~~~~~a~~~g~~ 71 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSL--LTDG----NTE---VVIDFTHPDVVMGNLEFLIDNGIH 71 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHH--HHHT----TCC---EEEECSCTTTHHHHHHHHHHTTCE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHH--Hhcc----CCc---EEEEccChHHHHHHHHHHHHcCCC
Confidence 48999999999999999999876 8999877654332221 1110 111 4566666655443322 567
Q ss_pred EEEEccc
Q 020608 80 GVFHLAS 86 (323)
Q Consensus 80 ~Vih~a~ 86 (323)
+|+-+.|
T Consensus 72 ~VigTTG 78 (245)
T 1p9l_A 72 AVVGTTG 78 (245)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 7765554
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0006 Score=58.94 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=58.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC---CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR---YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+|++|.|.||||++|+.+++.|.+++ .+++.+....+... .+...+..+.+...| ++ .++++|+
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~------~~~~~~~~i~~~~~~---~~----~~~~vDv 68 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGK------TYRFNGKTVRVQNVE---EF----DWSQVHI 68 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTC------EEEETTEEEEEEEGG---GC----CGGGCSE
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCC------ceeecCceeEEecCC---hH----HhcCCCE
Confidence 46899999999999999999999873 47777763221100 010001122222222 11 2458999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSIS 130 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (323)
||-|.+.. .+...+..+.+.|+ ++|-.|+..
T Consensus 69 Vf~a~g~~------------------~s~~~a~~~~~~G~-~vId~s~~~ 99 (336)
T 2r00_A 69 ALFSAGGE------------------LSAKWAPIAAEAGV-VVIDNTSHF 99 (336)
T ss_dssp EEECSCHH------------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred EEECCCch------------------HHHHHHHHHHHcCC-EEEEcCCcc
Confidence 99887631 24455666667775 778778763
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00069 Score=58.89 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=49.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH-hHHHHHhc--CCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY-DAIAAAVT--GCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~--~~d~ 80 (323)
.+.+|||+||+|.||..+++.+...|.+|+++ +++ +..+.++++ +...+. +-.+. +.+.+... ++|+
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~---~~~~~~~~l-----Ga~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARG---SDLEYVRDL-----GATPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECH---HHHHHHHHH-----TSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCH---HHHHHHHHc-----CCCEec-cCCCHHHHHHHHhcCCCceE
Confidence 46799999999999999999999999999988 543 233444443 223222 22222 22333333 6899
Q ss_pred EEEccc
Q 020608 81 VFHLAS 86 (323)
Q Consensus 81 Vih~a~ 86 (323)
||++++
T Consensus 220 vid~~g 225 (343)
T 3gaz_A 220 VYDTLG 225 (343)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999986
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0011 Score=58.12 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=54.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+.+|||+|+ |.||..+++.+...|.+|+++++++.+.+. ..+++. .. . ..|..+.+.+.++..++|+||+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~--~~~~lG---a~-~--v~~~~~~~~~~~~~~~~D~vid 257 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEE--ALKNFG---AD-S--FLVSRDQEQMQAAAGTLDGIID 257 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHH--HHHTSC---CS-E--EEETTCHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH--HHHhcC---Cc-e--EEeccCHHHHHHhhCCCCEEEE
Confidence 5679999996 999999999999999999999886533221 111331 11 1 2355666667776678999999
Q ss_pred cccC
Q 020608 84 LASP 87 (323)
Q Consensus 84 ~a~~ 87 (323)
+++.
T Consensus 258 ~~g~ 261 (366)
T 1yqd_A 258 TVSA 261 (366)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 9975
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0051 Score=53.55 Aligned_cols=76 Identities=17% Similarity=0.051 Sum_probs=49.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEcc--CCCHhHHHHHh-----c
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQID--LLDYDAIAAAV-----T 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D--l~~~~~~~~~~-----~ 76 (323)
.+.+|||+|+ |.+|...++.+...|.+|+++++++ +..+.++++. .. ..+..+ -...+.+.+.. .
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~---~~~~~~~~lG---a~-~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSP---RRLEVAKNCG---AD-VTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHTT---CS-EEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCH---HHHHHHHHhC---CC-EEEcCcccccHHHHHHHHhccccCC
Confidence 4679999997 9999999998888999998887753 2333333332 12 222211 12234455444 3
Q ss_pred CCCEEEEcccC
Q 020608 77 GCTGVFHLASP 87 (323)
Q Consensus 77 ~~d~Vih~a~~ 87 (323)
++|+||++++.
T Consensus 240 g~D~vid~~g~ 250 (352)
T 1e3j_A 240 LPNVTIDCSGN 250 (352)
T ss_dssp CCSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 69999999874
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00046 Score=58.34 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=47.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
+||+|.|+|+||.+|+.++..|++.|++|++.+|++.. .+.+... ++ +..+ ..++++++|+||-
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~---~~~~~~~-----g~-----~~~~---~~~~~~~aDvVi~ 73 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEG---RDRLQGM-----GI-----PLTD---GDGWIDEADVVVL 73 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHH---HHHHHHT-----TC-----CCCC---SSGGGGTCSEEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHH---HHHHHhc-----CC-----CcCC---HHHHhcCCCEEEE
Confidence 45799999999999999999999999999998876422 2222221 11 1122 2335678999998
Q ss_pred ccc
Q 020608 84 LAS 86 (323)
Q Consensus 84 ~a~ 86 (323)
+..
T Consensus 74 av~ 76 (286)
T 3c24_A 74 ALP 76 (286)
T ss_dssp CSC
T ss_pred cCC
Confidence 863
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00028 Score=63.63 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=48.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc--CCCCCeE-EE-----EccCCCHhHHHHHhcC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE--GADTRLR-LF-----QIDLLDYDAIAAAVTG 77 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~-~~-----~~Dl~~~~~~~~~~~~ 77 (323)
|+|.|.| +|++|..++..|++.|++|++++|++...+ .+.+-. ...++.. .+ .+.++-..++++++++
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~~~v~---~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~ 78 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGANVRCIDTDRNKIE---QLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPE 78 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHH---HHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGG
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCHHHHH---HHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhc
Confidence 6899998 599999999999999999999988643222 222210 0000000 00 0111111235666788
Q ss_pred CCEEEEcccC
Q 020608 78 CTGVFHLASP 87 (323)
Q Consensus 78 ~d~Vih~a~~ 87 (323)
+|+||-+.+.
T Consensus 79 aDvViiaVpt 88 (450)
T 3gg2_A 79 ADIIFIAVGT 88 (450)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEEEcCC
Confidence 9999988754
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0015 Score=55.57 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=52.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++.+++|+|.|+ |-||+.+++.|...|.+|++.+|++.+ .+.+... +++.+ +.++++++++++|+|
T Consensus 154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~---~~~~~~~-----g~~~~-----~~~~l~~~l~~aDvV 219 (300)
T 2rir_A 154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAH---LARITEM-----GLVPF-----HTDELKEHVKDIDIC 219 (300)
T ss_dssp CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHH---HHHHHHT-----TCEEE-----EGGGHHHHSTTCSEE
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHC-----CCeEE-----chhhHHHHhhCCCEE
Confidence 357899999995 999999999999999999999886422 1222221 23322 124577788999999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
+.+...
T Consensus 220 i~~~p~ 225 (300)
T 2rir_A 220 INTIPS 225 (300)
T ss_dssp EECCSS
T ss_pred EECCCh
Confidence 998864
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.001 Score=56.65 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=32.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
++++|.|+||+|.||+.++..|.+.|++|++.+|++
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 356899999999999999999999999999998764
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0015 Score=54.73 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=55.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEe-cCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATV-KNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++.||.|.|++|-+|+.+++.+.+. +.++++.. |+.+...- .....+. ++. ..++.-.+++++++.++|+|
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G-~d~gel~----G~~--~~gv~v~~dl~~ll~~aDVv 92 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVD-KDASILI----GSD--FLGVRITDDPESAFSNTEGI 92 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTT-SBGGGGT----TCS--CCSCBCBSCHHHHTTSCSEE
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc-cchHHhh----ccC--cCCceeeCCHHHHhcCCCEE
Confidence 3468999999999999999999865 67877764 43221000 0000000 000 11222223566777889999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEE
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 125 (323)
|.+..+ ..+...+..|.+.|+ .+|.
T Consensus 93 IDFT~p------------------~a~~~~~~~~l~~Gv-~vVi 117 (288)
T 3ijp_A 93 LDFSQP------------------QASVLYANYAAQKSL-IHII 117 (288)
T ss_dssp EECSCH------------------HHHHHHHHHHHHHTC-EEEE
T ss_pred EEcCCH------------------HHHHHHHHHHHHcCC-CEEE
Confidence 988632 123445666777764 5553
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00099 Score=56.32 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=45.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|+|.|.| +|.+|+.++..|++.|++|++.+|++...+... +. ++.. .++++++++++|+||-+.
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~---~~-----g~~~-------~~~~~~~~~~aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELA---AL-----GAER-------AATPCEVVESCPVTFAML 65 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH---HT-----TCEE-------CSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH---HC-----CCee-------cCCHHHHHhcCCEEEEEc
Confidence 6899999 599999999999999999999988764433221 11 2221 123455666789888776
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0077 Score=52.45 Aligned_cols=177 Identities=13% Similarity=0.031 Sum_probs=96.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--E---EEEEecCCCcH-H-HHHHHhhccCCC-CCeEEEEccCCCHhHHHHHh
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--T---VHATVKNLSDE-R-ETAHLKALEGAD-TRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~---V~~~~r~~~~~-~-~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~ 75 (323)
..+||.|+||+|.||++++-.|+..+. + +.+...+.+.. . .......+.+.. +-..-+. +.. ...+.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~--i~~--~~y~~~ 106 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVS--IGI--DPYEVF 106 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEE--EES--CHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcE--Eec--CCHHHh
Confidence 356899999999999999999998763 2 65544433221 1 111222232211 1111111 111 124568
Q ss_pred cCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-C-cCEEEEecccccccCCCCCCCCccccCCCCCChh
Q 020608 76 TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-G-VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE 153 (323)
Q Consensus 76 ~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~ 153 (323)
+++|+||-+||...- ....-.+.++.|+.-.+.+.....++ + -..++.+|.-.-.... ...+....+.+
T Consensus 107 ~daDvVVitag~prk--pG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~------ia~k~sg~~~~- 177 (375)
T 7mdh_A 107 EDVDWALLIGAKPRG--PGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNAL------ICLKNAPDIPA- 177 (375)
T ss_dssp TTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH------HHHHTCTTSCG-
T ss_pred CCCCEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHH------HHHHHcCCCCc-
Confidence 899999999986322 22334568899999999999998764 3 2367776653111000 00000000000
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCC
Q 020608 154 YCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIP 198 (323)
Q Consensus 154 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~ 198 (323)
...-+-+-+-.-++-...+++.|++...++-..|+|.+..
T Consensus 178 -----rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd 217 (375)
T 7mdh_A 178 -----KNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 217 (375)
T ss_dssp -----GGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST
T ss_pred -----cEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCC
Confidence 0112334444455555556677776666654467787643
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0028 Score=53.02 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=49.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++++++|+|+ |.+|+.++..|++.|. +|++..|+.++.. +..+.+.. ..+... ++.+ +.. .++|+|
T Consensus 118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~--~la~~~~~--~~~~~~--~~~~---l~~--~~~Div 185 (272)
T 3pwz_A 118 LRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKAL--ALRNELDH--SRLRIS--RYEA---LEG--QSFDIV 185 (272)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHH--HHHHHHCC--TTEEEE--CSGG---GTT--CCCSEE
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHH--HHHHHhcc--CCeeEe--eHHH---hcc--cCCCEE
Confidence 46899999997 8999999999999995 9999988753322 22222221 123333 2222 211 578999
Q ss_pred EEcccCC
Q 020608 82 FHLASPC 88 (323)
Q Consensus 82 ih~a~~~ 88 (323)
|++....
T Consensus 186 InaTp~g 192 (272)
T 3pwz_A 186 VNATSAS 192 (272)
T ss_dssp EECSSGG
T ss_pred EECCCCC
Confidence 9997653
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.001 Score=58.00 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=55.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC---EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY---TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++|.|.||||++|..|++.|.++++ ++..+.-.. .... .+...+.+..+...|. + .++++|+|
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~-saG~-----~~~~~~~~~~~~~~~~---~----~~~~~Dvv 68 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASAR-SAGK-----SLKFKDQDITIEETTE---T----AFEGVDIA 68 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTT-TTTC-----EEEETTEEEEEEECCT---T----TTTTCSEE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccc-cCCC-----cceecCCCceEeeCCH---H----HhcCCCEE
Confidence 47999999999999999999988765 444443221 1110 0000011122222221 1 25689999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSIS 130 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~ 130 (323)
|-|++. ..+...+..+.+.|+ ++|=.|+..
T Consensus 69 f~a~~~------------------~~s~~~a~~~~~~G~-~vIDlSa~~ 98 (366)
T 3pwk_A 69 LFSAGS------------------STSAKYAPYAVKAGV-VVVDNTSYF 98 (366)
T ss_dssp EECSCH------------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred EECCCh------------------HhHHHHHHHHHHCCC-EEEEcCCcc
Confidence 998853 123445555566675 778888763
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0018 Score=54.97 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=51.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++.+++|+|.| .|-||+.+++.|...|.+|++.+|++.+ .+..... ++..+ +.++++++++++|+|
T Consensus 152 ~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~---~~~~~~~-----g~~~~-----~~~~l~~~l~~aDvV 217 (293)
T 3d4o_A 152 TIHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDL---LARIAEM-----GMEPF-----HISKAAQELRDVDVC 217 (293)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHH---HHHHHHT-----TSEEE-----EGGGHHHHTTTCSEE
T ss_pred CCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHH---HHHHHHC-----CCeec-----ChhhHHHHhcCCCEE
Confidence 35789999999 5999999999999999999999886422 1222221 23322 234577788999999
Q ss_pred EEccc
Q 020608 82 FHLAS 86 (323)
Q Consensus 82 ih~a~ 86 (323)
+.+..
T Consensus 218 i~~~p 222 (293)
T 3d4o_A 218 INTIP 222 (293)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99874
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0052 Score=52.73 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=69.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHH-HHh-hccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETA-HLK-ALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|+|.|+|+ |.+|+.++..|++.|+ +|++++|++....... .+. .... .....+.. ++.+ .++++|+|
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~-~~~~~i~~---~d~~----~~~~aDvV 71 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPF-TRRANIYA---GDYA----DLKGSDVV 71 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGG-SCCCEEEE---CCGG----GGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhh-cCCcEEEe---CCHH----HhCCCCEE
Confidence 58999998 9999999999999999 9999988643222211 011 1110 11222222 2322 36789999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
|-+++....+ ...-......|+.....+++.+.+.... .+|.+|.
T Consensus 72 iiav~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tN 117 (319)
T 1a5z_A 72 IVAAGVPQKP--GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (319)
T ss_dssp EECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEccCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 9998753321 1112346677888888888887765433 5555543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.002 Score=56.74 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=49.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh--cCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV--TGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~d~V 81 (323)
.+.+|||+||+|.||..+++.+...|.+|+++.+ ..+ .+.++++. .. . ..|..+.+..+++. .++|+|
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~---~~~~~~lG---a~-~--v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDA---SELVRKLG---AD-D--VIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGG---HHHHHHTT---CS-E--EEETTSSCHHHHHHTSCCBSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHH---HHHHHHcC---CC-E--EEECCchHHHHHHhhcCCCCEE
Confidence 4679999999999999999999999999998873 222 23333331 12 1 12444433333333 479999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|+++|.
T Consensus 253 id~~g~ 258 (375)
T 2vn8_A 253 LDNVGG 258 (375)
T ss_dssp EESSCT
T ss_pred EECCCC
Confidence 999974
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0022 Score=56.53 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=53.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||+|+|+|+ |.+|+.+++.|.+.|++|++++.++..... .+ .-..+..|..|.+.+.++.+++|.|+-.
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~-----~~-----~~~~~~~~~~d~~~l~~~~~~~d~v~~~ 69 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPAG-----QV-----ADEQIVAGFFDSERIEDLVKGSDVTTYD 69 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTG-----GG-----SSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchh-----hh-----CceEEECCCCCHHHHHHHHhcCCEEEec
Confidence 479999997 899999999999999999998765432111 11 1135678999999998888899998754
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 70 ~ 70 (380)
T 3ax6_A 70 L 70 (380)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0012 Score=58.71 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=51.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+.+++|+|+|+ |.+|+.+++.|...|. +|++++|+..+.. +..+.+ +... . +.+++.+++.++|+|
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~--~la~~~-----g~~~--~---~~~~l~~~l~~aDvV 231 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAV--ELARDL-----GGEA--V---RFDELVDHLARSDVV 231 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHH--HHHHHH-----TCEE--C---CGGGHHHHHHTCSEE
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHH--HHHHHc-----CCce--e---cHHhHHHHhcCCCEE
Confidence 46899999997 9999999999999998 9999988642211 222222 1221 1 233566777899999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|.+.+.
T Consensus 232 i~at~~ 237 (404)
T 1gpj_A 232 VSATAA 237 (404)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 999754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.012 Score=51.48 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=50.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCE-EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHH----Hh--c
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYT-VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAA----AV--T 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~----~~--~ 76 (323)
.+.+|||+|+ |.+|...++.+...|.+ |+++++++ +..+.++++ . ..+..+..|-.+.+++.+ +. +
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~---~~~~~a~~l-~--~~~~~~~~~~~~~~~~~~~v~~~t~g~ 251 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDE---GRLKFAKEI-C--PEVVTHKVERLSAEESAKKIVESFGGI 251 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCH---HHHHHHHHH-C--TTCEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH---HHHHHHHHh-c--hhcccccccccchHHHHHHHHHHhCCC
Confidence 4679999998 99999999998889997 88887754 333444444 1 123333344334444333 22 2
Q ss_pred CCCEEEEcccC
Q 020608 77 GCTGVFHLASP 87 (323)
Q Consensus 77 ~~d~Vih~a~~ 87 (323)
++|+||.++|.
T Consensus 252 g~Dvvid~~g~ 262 (363)
T 3m6i_A 252 EPAVALECTGV 262 (363)
T ss_dssp CCSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 68999999874
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00068 Score=58.99 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=28.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-CEEEEEe
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATV 36 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (323)
+|++|.|.||||++|+.+++.|.+.. .+++++.
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~ 36 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS 36 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence 56899999999999999999998764 5888775
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0035 Score=46.59 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=55.2
Q ss_pred CCceEEEeccc---cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 4 EAEVVCVTGGS---GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 4 ~~~~vlItGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+.++|.|.|+| |-+|..+++.|++.|++|+.+.++... + .+.. ...+ +.++.+.+|.
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~---------i----~G~~-~~~s------~~el~~~vDl 72 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE---------I----EGLK-CYRS------VRELPKDVDV 72 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE---------E----TTEE-CBSS------GGGSCTTCCE
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe---------E----CCee-ecCC------HHHhCCCCCE
Confidence 45789999997 899999999999999997776443210 0 0111 1122 2333447898
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
++-+... .....+++.+.+.+++.++..+|+
T Consensus 73 vii~vp~------------------~~v~~v~~~~~~~g~~~i~~~~~~ 103 (138)
T 1y81_A 73 IVFVVPP------------------KVGLQVAKEAVEAGFKKLWFQPGA 103 (138)
T ss_dssp EEECSCH------------------HHHHHHHHHHHHTTCCEEEECTTS
T ss_pred EEEEeCH------------------HHHHHHHHHHHHcCCCEEEEcCcc
Confidence 8877521 123345555666777777776543
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.003 Score=54.98 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=67.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcH-----------------HHHHHHhhccCC--CCCeEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDE-----------------RETAHLKALEGA--DTRLRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-----------------~~~~~~~~~~~~--~~~~~~~~~ 63 (323)
+.++|+|.|+ |.+|++++..|+..|. ++++++++.-.. ......+.+... ..+++.+..
T Consensus 117 ~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 195 (353)
T 3h5n_A 117 KNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIAL 195 (353)
T ss_dssp HTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred hCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeec
Confidence 4679999996 8899999999999996 788887653111 111112222222 235667778
Q ss_pred cCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
++++..++.. ++++|+||.+... +.. .-..+.++|.+.++ .+|+.+.
T Consensus 196 ~i~~~~~~~~-~~~~DlVvd~~Dn---------~~~-------~r~~ln~~c~~~~~-p~i~~~~ 242 (353)
T 3h5n_A 196 NINDYTDLHK-VPEADIWVVSADH---------PFN-------LINWVNKYCVRANQ-PYINAGY 242 (353)
T ss_dssp CCCSGGGGGG-SCCCSEEEECCCC---------STT-------HHHHHHHHHHHTTC-CEEEEEE
T ss_pred ccCchhhhhH-hccCCEEEEecCC---------hHH-------HHHHHHHHHHHhCC-CEEEEEE
Confidence 8877665666 8899999997621 110 11224566777774 6666543
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0027 Score=54.50 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=52.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCC-----------------cHHHHHHHhhccCCCCC--eEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLS-----------------DERETAHLKALEGADTR--LRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-----------------~~~~~~~~~~~~~~~~~--~~~~~~ 63 (323)
+.++|+|.|+ |.+|+++++.|+..|. +++++++..- ........+.+...++. ++.+..
T Consensus 33 ~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~ 111 (340)
T 3rui_A 33 KNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL 111 (340)
T ss_dssp HTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred hCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEec
Confidence 4679999996 9999999999999996 6777765320 01111222233322334 444544
Q ss_pred cCC--------------CHhHHHHHhcCCCEEEEcc
Q 020608 64 DLL--------------DYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 64 Dl~--------------~~~~~~~~~~~~d~Vih~a 85 (323)
++. +.+.+.++++++|+||.+.
T Consensus 112 ~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~t 147 (340)
T 3rui_A 112 SIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLV 147 (340)
T ss_dssp CCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECC
T ss_pred cccccCcccchhhhhcCCHHHHHhhhccCCEEEecC
Confidence 441 2345677888999999986
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0016 Score=56.78 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=53.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccC------------------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL------------------ 65 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl------------------ 65 (323)
.+++|+|+|+ |-+|...++.|...|.+|++++|++...+. +..+ +.+++..|+
T Consensus 183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~---~~~l-----Ga~~~~l~~~~~~~~gya~~~~~~~~~ 253 (381)
T 3p2y_A 183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQ---VRSV-----GAQWLDLGIDAAGEGGYARELSEAERA 253 (381)
T ss_dssp CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHH---HHHT-----TCEECCCC-------------CHHHHH
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHHc-----CCeEEeccccccccccchhhhhHHHHh
Confidence 4679999997 999999999999999999999987644332 2222 233332211
Q ss_pred CCHhHHHHHhcCCCEEEEcccC
Q 020608 66 LDYDAIAAAVTGCTGVFHLASP 87 (323)
Q Consensus 66 ~~~~~~~~~~~~~d~Vih~a~~ 87 (323)
.+.+.++++++++|+||.++..
T Consensus 254 ~~~~~l~e~l~~aDIVI~tv~i 275 (381)
T 3p2y_A 254 QQQQALEDAITKFDIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHTTCSEEEECCCC
T ss_pred hhHHHHHHHHhcCCEEEECCCC
Confidence 1235677888999999988743
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=55.84 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=47.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
+||+|.|+| +|.+|+.++..|++.|++|++.+|++....... +. ++.. ..+++++++++|+||-
T Consensus 20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~---~~-----g~~~-------~~~~~~~~~~aDvvi~ 83 (310)
T 3doj_A 20 HMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV---EH-----GASV-------CESPAEVIKKCKYTIA 83 (310)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH---HT-----TCEE-------CSSHHHHHHHCSEEEE
T ss_pred cCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH---HC-----CCeE-------cCCHHHHHHhCCEEEE
Confidence 578999998 699999999999999999999998764433221 11 2221 1234555667888887
Q ss_pred cc
Q 020608 84 LA 85 (323)
Q Consensus 84 ~a 85 (323)
+.
T Consensus 84 ~v 85 (310)
T 3doj_A 84 ML 85 (310)
T ss_dssp CC
T ss_pred Ec
Confidence 76
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.004 Score=52.26 Aligned_cols=74 Identities=8% Similarity=0.165 Sum_probs=49.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++++++|+|+ |.+|+.++..|++.|. +|++..|+.++... ..+.+... ..+.... +.+ + ..++|+|
T Consensus 124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~--la~~~~~~-~~~~~~~--~~~---l---~~~aDiI 191 (281)
T 3o8q_A 124 LKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQ--LAELVAAY-GEVKAQA--FEQ---L---KQSYDVI 191 (281)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHH--HHHHHGGG-SCEEEEE--GGG---C---CSCEEEE
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHH--HHHHhhcc-CCeeEee--HHH---h---cCCCCEE
Confidence 46899999997 8999999999999996 99999997533222 22222211 1233332 211 1 1578999
Q ss_pred EEcccCC
Q 020608 82 FHLASPC 88 (323)
Q Consensus 82 ih~a~~~ 88 (323)
|++....
T Consensus 192 InaTp~g 198 (281)
T 3o8q_A 192 INSTSAS 198 (281)
T ss_dssp EECSCCC
T ss_pred EEcCcCC
Confidence 9998653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0022 Score=56.01 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=48.7
Q ss_pred CceEEEeccccHHHHHH-HHHH-HHCCCE-EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH--hHHHHHhcCCC
Q 020608 5 AEVVCVTGGSGCIGSWL-VSLL-LERRYT-VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY--DAIAAAVTGCT 79 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l-~~~L-~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~d 79 (323)
..+|||+|+ |.+|... ++.+ ...|.+ |+++++++......+.++++ +...+ |..+. .++.++-.++|
T Consensus 173 ~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l-----Ga~~v--~~~~~~~~~i~~~~gg~D 244 (357)
T 2b5w_A 173 PSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL-----DATYV--DSRQTPVEDVPDVYEQMD 244 (357)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT-----TCEEE--ETTTSCGGGHHHHSCCEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc-----CCccc--CCCccCHHHHHHhCCCCC
Confidence 389999999 9999999 7777 667987 99999876411122333333 33433 54432 22444412689
Q ss_pred EEEEcccC
Q 020608 80 GVFHLASP 87 (323)
Q Consensus 80 ~Vih~a~~ 87 (323)
+||++++.
T Consensus 245 vvid~~g~ 252 (357)
T 2b5w_A 245 FIYEATGF 252 (357)
T ss_dssp EEEECSCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0036 Score=55.26 Aligned_cols=74 Identities=19% Similarity=0.113 Sum_probs=54.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GC 78 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 78 (323)
|+.++|+|+|+|+ |.+|..+++.+.+.|++|+++...+..... .. --..+..|..|.+.+.++++ ++
T Consensus 7 m~~~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~-----~~-----~d~~~~~~~~d~~~l~~~~~~~~~ 75 (391)
T 1kjq_A 7 LRPAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM-----HV-----AHRSHVINMLDGDALRRVVELEKP 75 (391)
T ss_dssp TSTTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG-----GG-----SSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCCchh-----hh-----ccceEECCCCCHHHHHHHHHHcCC
Confidence 4556789999987 789999999999999999999776533211 11 11346678888888887775 78
Q ss_pred CEEEEcc
Q 020608 79 TGVFHLA 85 (323)
Q Consensus 79 d~Vih~a 85 (323)
|.|+...
T Consensus 76 d~v~~~~ 82 (391)
T 1kjq_A 76 HYIVPEI 82 (391)
T ss_dssp SEEEECS
T ss_pred CEEEECC
Confidence 9988643
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0042 Score=54.81 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=50.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC-----------------
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL----------------- 66 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~----------------- 66 (323)
.+++|+|+|+ |-+|..+++.+...|.+|++++|++...+... .+ +..++..|..
T Consensus 171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~---~~-----Ga~~~~i~~~~~~~~~~~~~~~~~~s~ 241 (384)
T 1l7d_A 171 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVE---SL-----GGKFITVDDEAMKTAETAGGYAKEMGE 241 (384)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH---HT-----TCEECCC--------------------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---Hc-----CCeEEeecccccccccccccchhhcCH
Confidence 5789999995 99999999999999999999988765433322 22 1222211110
Q ss_pred -----CHhHHHHHhcCCCEEEEcc
Q 020608 67 -----DYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 67 -----~~~~~~~~~~~~d~Vih~a 85 (323)
+.+.+.+++.++|+||+++
T Consensus 242 ~~~~~~~~~l~~~~~~aDvVi~~~ 265 (384)
T 1l7d_A 242 EFRKKQAEAVLKELVKTDIAITTA 265 (384)
T ss_dssp ---CCHHHHHHHHHTTCSEEEECC
T ss_pred HHHhhhHHHHHHHhCCCCEEEECC
Confidence 1234777888999999988
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0025 Score=55.41 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=50.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC--HhHHHHHh-cCCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD--YDAIAAAV-TGCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~-~~~d~ 80 (323)
.+.+|||+||+|.||...++.+...|.+|+++++++ +..+.++++.. . .. .|..+ .+.+.++- .++|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~---~~~~~~~~lGa---~-~v--i~~~~~~~~~~~~~~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN---ETIEWTKKMGA---D-IV--LNHKESLLNQFKTQGIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSH---HHHHHHHHHTC---S-EE--ECTTSCHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHhcCC---c-EE--EECCccHHHHHHHhCCCCccE
Confidence 478999999999999999999999999999998753 33344444321 1 11 22222 22333331 26899
Q ss_pred EEEcccC
Q 020608 81 VFHLASP 87 (323)
Q Consensus 81 Vih~a~~ 87 (323)
||++++.
T Consensus 221 v~d~~g~ 227 (346)
T 3fbg_A 221 VFCTFNT 227 (346)
T ss_dssp EEESSCH
T ss_pred EEECCCc
Confidence 9999863
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.007 Score=54.70 Aligned_cols=100 Identities=23% Similarity=0.325 Sum_probs=69.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih 83 (323)
.++|+|.|| |-+|.+|++.| +++++|.++.+++.... ...+.+ ++..++.||-+|.+-+++. ++.+|+++-
T Consensus 235 ~~~v~I~Gg-G~ig~~lA~~L-~~~~~v~iIE~d~~r~~--~la~~l----~~~~Vi~GD~td~~~L~ee~i~~~D~~ia 306 (461)
T 4g65_A 235 YRRIMIVGG-GNIGASLAKRL-EQTYSVKLIERNLQRAE--KLSEEL----ENTIVFCGDAADQELLTEENIDQVDVFIA 306 (461)
T ss_dssp CCEEEEECC-SHHHHHHHHHH-TTTSEEEEEESCHHHHH--HHHHHC----TTSEEEESCTTCHHHHHHTTGGGCSEEEE
T ss_pred ccEEEEEcc-hHHHHHHHHHh-hhcCceEEEecCHHHHH--HHHHHC----CCceEEeccccchhhHhhcCchhhcEEEE
Confidence 468999996 99999999997 56799999877542222 222333 4678899999999988764 567899986
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+.+. + ++|+..+ -.|++.|++++|-.-.-
T Consensus 307 ~T~~--------D-----e~Ni~~~----llAk~~gv~kvIa~vn~ 335 (461)
T 4g65_A 307 LTNE--------D-----ETNIMSA----MLAKRMGAKKVMVLIQR 335 (461)
T ss_dssp CCSC--------H-----HHHHHHH----HHHHHTTCSEEEEECSC
T ss_pred cccC--------c-----HHHHHHH----HHHHHcCCccccccccc
Confidence 6532 1 3455443 24677888887665443
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0095 Score=50.58 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=70.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
.++||.|+|| |.+|+.++..|+..|. +|++++++.........+.... .+++.. ..| + +.++++|+|
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~--~~~i~~-t~d------~-~~l~~aD~V 81 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN--LPNVEI-SKD------L-SASAHSKVV 81 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT--CTTEEE-ESC------G-GGGTTCSEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc--CCCeEE-eCC------H-HHHCCCCEE
Confidence 3579999996 9999999999999998 9999988753111111111111 124443 233 2 347899999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
|-+++... + ...-...+..|+.-.+.+.+.+.+.... .++++|-.
T Consensus 82 i~aag~~~-p--G~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP 127 (303)
T 2i6t_A 82 IFTVNSLG-S--SQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP 127 (303)
T ss_dssp EECCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSS
T ss_pred EEcCCCCC-C--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCCh
Confidence 99998731 1 1233456778888888888888776533 55565553
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0047 Score=51.38 Aligned_cols=66 Identities=12% Similarity=0.006 Sum_probs=48.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
+++++|+|+ |..|+.++..|++.|.+|++..|+.++.+... .+ ++... ++.+. .++|+||++
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la---~~-----~~~~~--~~~~l-------~~~DiVIna 179 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ---RL-----GCDCF--MEPPK-------SAFDLIINA 179 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH---HH-----TCEEE--SSCCS-------SCCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HC-----CCeEe--cHHHh-------ccCCEEEEc
Confidence 689999996 99999999999999999999999876654433 22 12222 23221 278999999
Q ss_pred ccCC
Q 020608 85 ASPC 88 (323)
Q Consensus 85 a~~~ 88 (323)
....
T Consensus 180 Tp~G 183 (269)
T 3phh_A 180 TSAS 183 (269)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 7654
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0037 Score=56.00 Aligned_cols=95 Identities=12% Similarity=0.239 Sum_probs=61.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC-C---EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC--CH-hHHHHHhcC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR-Y---TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL--DY-DAIAAAVTG 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~-~~~~~~~~~ 77 (323)
.++|+|.| .|.||+.+++.|+++. + +|++.+........ .+.. ++.+...+++ |. +.+++++++
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~---~~~~-----g~~~~~~~Vdadnv~~~l~aLl~~ 83 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDV---AQQY-----GVSFKLQQITPQNYLEVIGSTLEE 83 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCH---HHHH-----TCEEEECCCCTTTHHHHTGGGCCT
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhH---Hhhc-----CCceeEEeccchhHHHHHHHHhcC
Confidence 36899999 6999999999999864 4 68887665433221 1111 3455555554 44 335567777
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
.|+|||++-.. ....++++|.+.|+ -|++++
T Consensus 84 ~DvVIN~s~~~------------------~~l~Im~acleaGv---~YlDTa 114 (480)
T 2ph5_A 84 NDFLIDVSIGI------------------SSLALIILCNQKGA---LYINAA 114 (480)
T ss_dssp TCEEEECCSSS------------------CHHHHHHHHHHHTC---EEEESS
T ss_pred CCEEEECCccc------------------cCHHHHHHHHHcCC---CEEECC
Confidence 79999866321 13458889988874 445554
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0026 Score=56.57 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=54.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+++|+|+|+ |.+|+.+++.+.+.|++|++++ .+..... ++. .....+.+|..|.+.+.++.+.+|+|+-
T Consensus 23 ~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d-~~~~p~~-----~~a---d~~~~~~~~~~d~~~l~~~a~~~d~i~~ 92 (403)
T 3k5i_A 23 NSRKVGVLGG-GQLGRMLVESANRLNIQVNVLD-ADNSPAK-----QIS---AHDGHVTGSFKEREAVRQLAKTCDVVTA 92 (403)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE-STTCTTG-----GGC---CSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-CCCCcHH-----Hhc---cccceeecCCCCHHHHHHHHHhCCEEEE
Confidence 4679999996 8999999999999999999998 5432211 111 1123567999999999999999998763
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0018 Score=56.68 Aligned_cols=74 Identities=15% Similarity=0.059 Sum_probs=50.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH-hHHHHHhcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY-DAIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~d~Vi 82 (323)
.+.+|||+|+ |.+|..+++.+...|.+|+++++++.+.+... ++. .. .. .|..+. +..+++..++|+||
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~---~lG---a~-~v--~~~~~~~~~~~~~~~~~D~vi 248 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM---KMG---AD-HY--IATLEEGDWGEKYFDTFDLIV 248 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH---HHT---CS-EE--EEGGGTSCHHHHSCSCEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH---HcC---CC-EE--EcCcCchHHHHHhhcCCCEEE
Confidence 4679999999 99999999988888999999998765543322 221 11 11 233333 33333335799999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+++.
T Consensus 249 d~~g~ 253 (360)
T 1piw_A 249 VCASS 253 (360)
T ss_dssp ECCSC
T ss_pred ECCCC
Confidence 99875
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0045 Score=53.66 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=65.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCC--------------C---cHHHHHHHhhccCCCC--CeEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNL--------------S---DERETAHLKALEGADT--RLRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~--------------~---~~~~~~~~~~~~~~~~--~~~~~~~ 63 (323)
+..+|+|.|+ |.+|+++++.|+..|. ++++++... . ........+.+...++ .++.+..
T Consensus 35 ~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 113 (346)
T 1y8q_A 35 RASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTE 113 (346)
T ss_dssp HTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECS
T ss_pred hCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEec
Confidence 4579999995 8999999999999997 777774221 0 1111222223333233 4556666
Q ss_pred cCCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
++++ ...++++++|+||.+... ...-..+.++|++.+ ..+|..++.
T Consensus 114 ~~~~--~~~~~~~~~dvVv~~~d~-----------------~~~r~~ln~~~~~~~-ip~i~~~~~ 159 (346)
T 1y8q_A 114 DIEK--KPESFFTQFDAVCLTCCS-----------------RDVIVKVDQICHKNS-IKFFTGDVF 159 (346)
T ss_dssp CGGG--CCHHHHTTCSEEEEESCC-----------------HHHHHHHHHHHHHTT-CEEEEEEEE
T ss_pred ccCc--chHHHhcCCCEEEEcCCC-----------------HHHHHHHHHHHHHcC-CCEEEEeec
Confidence 6644 235678899999987421 222334666787777 477776655
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0014 Score=57.18 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=31.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
++|+|.|.|+ |.+|+.++..|++.|++|++++|++
T Consensus 3 ~~mki~iiG~-G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 3 ESKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4579999996 9999999999999999999998864
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00085 Score=57.03 Aligned_cols=65 Identities=14% Similarity=0.050 Sum_probs=47.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
+|+|.|+| .|.+|+.++..|++.|++|++.+|++...+..... +++. ..+++++.+ +|+||-+
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~-------~~~~~~~~~-aDvvi~~ 77 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA--------GATL-------ADSVADVAA-ADLIHIT 77 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHT--------TCEE-------CSSHHHHTT-SSEEEEC
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC--------CCEE-------cCCHHHHHh-CCEEEEE
Confidence 46899998 69999999999999999999999987554332211 2221 123566677 9999987
Q ss_pred cc
Q 020608 85 AS 86 (323)
Q Consensus 85 a~ 86 (323)
..
T Consensus 78 vp 79 (296)
T 3qha_A 78 VL 79 (296)
T ss_dssp CS
T ss_pred CC
Confidence 63
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0044 Score=54.56 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEcc----------------CCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQID----------------LLD 67 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D----------------l~~ 67 (323)
...+|+|+|+ |-+|...++.+...|.+|+++++++...+.. +.+ +..++..+ +++
T Consensus 189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~---~~~-----G~~~~~~~~~~~~d~~~~~~ya~e~s~ 259 (405)
T 4dio_A 189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQV---ASL-----GAKFIAVEDEEFKAAETAGGYAKEMSG 259 (405)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHH---HHT-----TCEECCCCC-----------------C
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH---HHc-----CCceeecccccccccccccchhhhcch
Confidence 4579999997 9999999999999999999999876543322 222 22222221 222
Q ss_pred ------HhHHHHHhcCCCEEEEcccC
Q 020608 68 ------YDAIAAAVTGCTGVFHLASP 87 (323)
Q Consensus 68 ------~~~~~~~~~~~d~Vih~a~~ 87 (323)
.+.++++++++|+||.++..
T Consensus 260 ~~~~~~~~~l~e~l~~aDVVI~tvli 285 (405)
T 4dio_A 260 EYQVKQAALVAEHIAKQDIVITTALI 285 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred hhhhhhHhHHHHHhcCCCEEEECCcC
Confidence 24678888999999998754
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0032 Score=52.45 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=48.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++++|+++|+|+++.+|+.++..|++.|..|++..|.. .++++.++++|+|
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t-----------------------------~~L~~~~~~ADIV 207 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-----------------------------KDLSLYTRQADLI 207 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-----------------------------SCHHHHHTTCSEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc-----------------------------hhHHHHhhcCCEE
Confidence 35789999999999999999999999999999875431 1366778899999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|...+.
T Consensus 208 I~Avg~ 213 (285)
T 3p2o_A 208 IVAAGC 213 (285)
T ss_dssp EECSSC
T ss_pred EECCCC
Confidence 999875
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0035 Score=53.40 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=31.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
++|+|.|+| +|.+|+.++..|++.|++|++.+|++.
T Consensus 6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~ 41 (303)
T 3g0o_A 6 TDFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLNPQ 41 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 457899998 699999999999999999999988653
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0038 Score=53.31 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=51.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++.+|+|.|.| .|-||+.+++.|...|++|++.+|++.... .+....+ .++++++++++|+|
T Consensus 136 ~l~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~-------------~~~~~~~----~~~l~ell~~aDiV 197 (315)
T 3pp8_A 136 TREEFSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRKSWP-------------GVESYVG----REELRAFLNQTRVL 197 (315)
T ss_dssp CSTTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSCCCCT-------------TCEEEES----HHHHHHHHHTCSEE
T ss_pred CcCCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEcCCchhhh-------------hhhhhcc----cCCHHHHHhhCCEE
Confidence 35789999999 599999999999999999999998763211 2222211 35788899999999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
+.+...
T Consensus 198 ~l~~Pl 203 (315)
T 3pp8_A 198 INLLPN 203 (315)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 877654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0029 Score=55.54 Aligned_cols=74 Identities=19% Similarity=0.141 Sum_probs=51.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+.+|||+|+ |.+|...++.+...|.+|+++++++.+.+ .++++. .. ...|..+.+.++++..++|+||.
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~---~a~~lG-----a~-~vi~~~~~~~~~~~~~g~Dvvid 263 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKRE---AAKALG-----AD-EVVNSRNADEMAAHLKSFDFILN 263 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHH---HHHHHT-----CS-EEEETTCHHHHHTTTTCEEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHcC-----Cc-EEeccccHHHHHHhhcCCCEEEE
Confidence 4679999997 88999999988889999999988654433 233331 11 12345555545554468999999
Q ss_pred cccC
Q 020608 84 LASP 87 (323)
Q Consensus 84 ~a~~ 87 (323)
+++.
T Consensus 264 ~~g~ 267 (369)
T 1uuf_A 264 TVAA 267 (369)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9874
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0029 Score=54.35 Aligned_cols=74 Identities=27% Similarity=0.365 Sum_probs=52.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+.+|||+||+|.+|...++.+...|.+|+++.+. . ..+.++++.. . + ..|..+.+.+.+.++++|+||.
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~---~-~~~~~~~lGa---~-~--~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK---R-NHAFLKALGA---E-Q--CINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH---H-HHHHHHHHTC---S-E--EEETTTSCHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc---c-hHHHHHHcCC---C-E--EEeCCCcchhhhhccCCCEEEE
Confidence 46799999999999999999999999999988642 1 2344444321 1 1 2344444435666688999999
Q ss_pred cccC
Q 020608 84 LASP 87 (323)
Q Consensus 84 ~a~~ 87 (323)
+.|.
T Consensus 222 ~~g~ 225 (321)
T 3tqh_A 222 LVGG 225 (321)
T ss_dssp SSCH
T ss_pred CCCc
Confidence 9863
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0014 Score=56.11 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=45.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++||+|.|+| +|.+|+.++..|++.|+ +|++.+|++ +....+.+.+. ++.. . ++.+++++++|+|
T Consensus 22 ~~~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~~-~~~~~~~~~~~-----g~~~----~---~~~~e~~~~aDvV 87 (312)
T 3qsg_A 22 SNAMKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAAS-AESWRPRAEEL-----GVSC----K---ASVAEVAGECDVI 87 (312)
T ss_dssp ---CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSSC-HHHHHHHHHHT-----TCEE----C---SCHHHHHHHCSEE
T ss_pred CCCCEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCCC-CHHHHHHHHHC-----CCEE----e---CCHHHHHhcCCEE
Confidence 4568999999 59999999999999999 999998863 11222222221 2221 1 1344556678999
Q ss_pred EEccc
Q 020608 82 FHLAS 86 (323)
Q Consensus 82 ih~a~ 86 (323)
|-+..
T Consensus 88 i~~vp 92 (312)
T 3qsg_A 88 FSLVT 92 (312)
T ss_dssp EECSC
T ss_pred EEecC
Confidence 98764
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0014 Score=59.14 Aligned_cols=120 Identities=10% Similarity=0.056 Sum_probs=69.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-----CCEEEEEecCCCcHHHHHHH-hhc-cCCCCCeEEEEccCCCHhHHHHHhc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-----RYTVHATVKNLSDERETAHL-KAL-EGADTRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~-~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
+++||.|.||.+..|.+++..|+.+ +.+|++.++++...+..... ..+ +.......+... .++.++++
T Consensus 27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t-----~D~~eal~ 101 (472)
T 1u8x_X 27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAFT 101 (472)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHHS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEE-----CCHHHHHc
Confidence 3469999998776688898889887 67899999875332221111 111 111112222221 23566788
Q ss_pred CCCEEEEcccCCccCCCCCc----------------h--hhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 77 GCTGVFHLASPCIVDKVEDP----------------Q--NQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~----------------~--~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
++|+||.+++....+....+ + .....-|+.....+++.+++.+...++...|
T Consensus 102 ~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~T 171 (472)
T 1u8x_X 102 DVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYS 171 (472)
T ss_dssp SCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 99999999976422110000 0 1123456777888888888877554444443
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0043 Score=53.81 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=47.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHh-cCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAV-TGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~-~~~ 78 (323)
.+.+|||+|+ |.+|..+++.+...|. +|+++++++. ..+.++++ . . . ..|..+.+ .+.++- .++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~---~~~~~~~l-a---~-~--v~~~~~~~~~~~~~~~~~~g~ 232 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPY---RLAFARPY-A---D-R--LVNPLEEDLLEVVRRVTGSGV 232 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH---HHGGGTTT-C---S-E--EECTTTSCHHHHHHHHHSSCE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---HHHHHHHh-H---H-h--ccCcCccCHHHHHHHhcCCCC
Confidence 4678999999 9999999999988999 9999987532 21222221 1 1 1 23443322 222221 368
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||++++.
T Consensus 233 D~vid~~g~ 241 (343)
T 2dq4_A 233 EVLLEFSGN 241 (343)
T ss_dssp EEEEECSCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.004 Score=54.42 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=51.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccC-CCHhHHHHHhcCCCEEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL-LDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~d~Vih 83 (323)
||+|+|+|| |..|..++..+.+.|++|++++.++..... ++ --+++..|. .|.+.+....+++|.|+-
T Consensus 1 MK~I~ilGg-g~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~-----~~-----aD~~~~~~~~~d~~~~~~~~~~~D~v~~ 69 (363)
T 4ffl_A 1 MKTICLVGG-KLQGFEAAYLSKKAGMKVVLVDKNPQALIR-----NY-----ADEFYCFDVIKEPEKLLELSKRVDAVLP 69 (363)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTT-----TT-----SSEEEECCTTTCHHHHHHHHTSSSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCChhH-----hh-----CCEEEECCCCcCHHHHHHHhcCCCEEEE
Confidence 689999995 899999999999999999999876543221 11 113455554 466777777789998875
Q ss_pred cc
Q 020608 84 LA 85 (323)
Q Consensus 84 ~a 85 (323)
..
T Consensus 70 ~~ 71 (363)
T 4ffl_A 70 VN 71 (363)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0042 Score=55.47 Aligned_cols=35 Identities=17% Similarity=0.017 Sum_probs=31.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+|++|.|.| .||+|..++..|++.|++|++++.++
T Consensus 20 ~m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 20 HMASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 578999998 79999999999999999999998753
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.011 Score=50.17 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=61.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhc-----cCCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL-----EGADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
.||||-++| .|-+|+.+++.|++.||+|++.+|++++.+.....-.. .+.-....++..=+.+.+.+++++.+.
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~ 80 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDD 80 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSS
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhch
Confidence 368999999 79999999999999999999999875333222111000 000012344455555666666655322
Q ss_pred ----------CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEE
Q 020608 79 ----------TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124 (323)
Q Consensus 79 ----------d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v 124 (323)
++||.+... + ...++.+.+.+++.|+ +|+
T Consensus 81 ~g~~~~~~~g~iiId~sT~--------~--------p~~~~~~a~~~~~~G~-~~l 119 (300)
T 3obb_A 81 DGLLAHIAPGTLVLECSTI--------A--------PTSARKIHAAARERGL-AML 119 (300)
T ss_dssp SSSTTSCCC-CEEEECSCC--------C--------HHHHHHHHHHHHTTTC-EEE
T ss_pred hhhhhcCCCCCEEEECCCC--------C--------HHHHHHHHHHHHHcCC-EEE
Confidence 345544422 2 3345667777777764 444
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0016 Score=55.55 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=46.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+|.|+| .|.+|+.+++.|++.|++|++.+|++... +.+.+. +... .++++++++++|+||-
T Consensus 8 ~~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~---~~~~~~-----g~~~-------~~~~~e~~~~aDvVi~ 71 (306)
T 3l6d_A 8 FEFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSPGKA---AALVAA-----GAHL-------CESVKAALSASPATIF 71 (306)
T ss_dssp CSCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHH---HHHHHH-----TCEE-------CSSHHHHHHHSSEEEE
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHC-----CCee-------cCCHHHHHhcCCEEEE
Confidence 467899998 69999999999999999999998864322 222211 1211 1234556677899998
Q ss_pred ccc
Q 020608 84 LAS 86 (323)
Q Consensus 84 ~a~ 86 (323)
+..
T Consensus 72 ~vp 74 (306)
T 3l6d_A 72 VLL 74 (306)
T ss_dssp CCS
T ss_pred EeC
Confidence 763
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00081 Score=56.86 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=46.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||+|.|.| +|.+|+.++..|++.|++|++.+|++...+..... ++.. ..+.+++++++|+||-+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~-------~~~~~~~~~~advvi~~ 64 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL--------GARQ-------ASSPAEVCAACDITIAM 64 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH--------TCEE-------CSCHHHHHHHCSEEEEC
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------CCee-------cCCHHHHHHcCCEEEEE
Confidence 47899998 69999999999999999999999876443332211 1211 11345556678888877
Q ss_pred cc
Q 020608 85 AS 86 (323)
Q Consensus 85 a~ 86 (323)
..
T Consensus 65 v~ 66 (287)
T 3pdu_A 65 LA 66 (287)
T ss_dssp CS
T ss_pred cC
Confidence 63
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0079 Score=53.98 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=30.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
|+|.|.| +|++|..++..|++.|++|++++|++
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4799998 69999999999999999999998864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0021 Score=55.03 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=47.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeE-EEEccCCCHhHHHH-HhcCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLR-LFQIDLLDYDAIAA-AVTGC 78 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~~~~~~~~-~~~~~ 78 (323)
+++|+|.|+| .|.||..++..|.+.|+ +|++.+|++.. .+.+.+. ++. ....| +++ +++++
T Consensus 31 ~~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~---~~~a~~~-----G~~~~~~~~------~~~~~~~~a 95 (314)
T 3ggo_A 31 LSMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPES---ISKAVDL-----GIIDEGTTS------IAKVEDFSP 95 (314)
T ss_dssp CSCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHH---HHHHHHT-----TSCSEEESC------TTGGGGGCC
T ss_pred cCCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHH---HHHHHHC-----CCcchhcCC------HHHHhhccC
Confidence 4558999999 79999999999999999 99999886422 2222222 110 11122 234 56789
Q ss_pred CEEEEccc
Q 020608 79 TGVFHLAS 86 (323)
Q Consensus 79 d~Vih~a~ 86 (323)
|+||-+..
T Consensus 96 DvVilavp 103 (314)
T 3ggo_A 96 DFVMLSSP 103 (314)
T ss_dssp SEEEECSC
T ss_pred CEEEEeCC
Confidence 99998864
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0032 Score=53.96 Aligned_cols=68 Identities=9% Similarity=0.134 Sum_probs=51.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++.+|+|.|.| .|-||+.+++.|...|++|++.+|++.... .+... ....+++++++++|+|
T Consensus 137 ~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-------------~~~~~----~~~~~l~ell~~aDvV 198 (324)
T 3hg7_A 137 GLKGRTLLILG-TGSIGQHIAHTGKHFGMKVLGVSRSGRERA-------------GFDQV----YQLPALNKMLAQADVI 198 (324)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCT-------------TCSEE----ECGGGHHHHHHTCSEE
T ss_pred ccccceEEEEE-ECHHHHHHHHHHHhCCCEEEEEcCChHHhh-------------hhhcc----cccCCHHHHHhhCCEE
Confidence 35789999999 699999999999999999999988753211 11001 1245678889999999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
+-+...
T Consensus 199 ~l~lPl 204 (324)
T 3hg7_A 199 VSVLPA 204 (324)
T ss_dssp EECCCC
T ss_pred EEeCCC
Confidence 888754
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0038 Score=52.39 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=47.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHH--HHhcCCC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIA--AAVTGCT 79 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~--~~~~~~d 79 (323)
++++++++|.|++|.+|+.++..|++.|..|++..|... +++ +.++++|
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~-----------------------------~l~l~~~~~~AD 212 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS-----------------------------TEDMIDYLRTAD 212 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC-----------------------------HHHHHHHHHTCS
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC-----------------------------CchhhhhhccCC
Confidence 357899999999999999999999999999998866320 233 7788999
Q ss_pred EEEEcccC
Q 020608 80 GVFHLASP 87 (323)
Q Consensus 80 ~Vih~a~~ 87 (323)
+||...+.
T Consensus 213 IVI~Avg~ 220 (300)
T 4a26_A 213 IVIAAMGQ 220 (300)
T ss_dssp EEEECSCC
T ss_pred EEEECCCC
Confidence 99999875
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0034 Score=56.77 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=35.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL 51 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~ 51 (323)
.+.+|||+||+|.||...+..+...|.+|+++++++ ...+.++++
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~---~~~~~~~~l 272 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSP---QKAEICRAM 272 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH---HHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCH---HHHHHHHhh
Confidence 467899999999999999999999999999988743 333444444
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0042 Score=53.58 Aligned_cols=65 Identities=14% Similarity=0.002 Sum_probs=48.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++.+|+|.|.| .|-||+.+++.|...|++|++.+|++... ..+.. ..+++++++++|+|
T Consensus 168 ~l~gktiGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~-------------~~~~~-------~~sl~ell~~aDvV 226 (340)
T 4dgs_A 168 SPKGKRIGVLG-LGQIGRALASRAEAFGMSVRYWNRSTLSG-------------VDWIA-------HQSPVDLARDSDVL 226 (340)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCTT-------------SCCEE-------CSSHHHHHHTCSEE
T ss_pred cccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCcccc-------------cCcee-------cCCHHHHHhcCCEE
Confidence 35789999999 59999999999999999999998875321 01111 13467788899999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
+-+...
T Consensus 227 il~vP~ 232 (340)
T 4dgs_A 227 AVCVAA 232 (340)
T ss_dssp EECC--
T ss_pred EEeCCC
Confidence 887643
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0051 Score=53.37 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=51.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++.+|+|.|.| .|-||+.+++.|...|++|++.+|++......... ++..+ ++++++++++|+|
T Consensus 161 ~l~gktvGIIG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~~-------~~l~ell~~aDvV 224 (351)
T 3jtm_A 161 DLEGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKET--------GAKFV-------EDLNEMLPKCDVI 224 (351)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHH--------CCEEC-------SCHHHHGGGCSEE
T ss_pred cccCCEEeEEE-eCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhC--------CCeEc-------CCHHHHHhcCCEE
Confidence 36789999999 69999999999999999999998876443322111 22211 3467788999999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
+.+...
T Consensus 225 ~l~~Pl 230 (351)
T 3jtm_A 225 VINMPL 230 (351)
T ss_dssp EECSCC
T ss_pred EECCCC
Confidence 888754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0023 Score=55.61 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=48.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+.+|||+|+ |.||...++.+...|.+|+++++++.+.+. ++++. .... + .+.+.+. +++|+||+
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~---~~~lG---a~~v-~----~~~~~~~---~~~D~vid 240 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQD---ALSMG---VKHF-Y----TDPKQCK---EELDFIIS 240 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHH---HHHTT---CSEE-E----SSGGGCC---SCEEEEEE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHH---HHhcC---CCee-c----CCHHHHh---cCCCEEEE
Confidence 4679999997 999999999998899999999887655433 33331 1222 2 3333332 28999999
Q ss_pred cccC
Q 020608 84 LASP 87 (323)
Q Consensus 84 ~a~~ 87 (323)
+++.
T Consensus 241 ~~g~ 244 (348)
T 3two_A 241 TIPT 244 (348)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 9875
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0056 Score=57.04 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=65.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcH-----------------HHHHHHhhccCCC--CCeEEEEcc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDE-----------------RETAHLKALEGAD--TRLRLFQID 64 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-----------------~~~~~~~~~~~~~--~~~~~~~~D 64 (323)
..+|+|.|+ |.+|+++++.|+..|. ++++++...-.. ......+.+...+ .+++.+..+
T Consensus 17 ~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~ 95 (640)
T 1y8q_B 17 GGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95 (640)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESC
T ss_pred cCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 468999996 9999999999999996 788776433111 1111122233333 356677788
Q ss_pred CCCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 65 LLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 65 l~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
+++.....++++++|+||.+... ...-..+.+.|.+.++ .+|..++.
T Consensus 96 i~~~~~~~~~~~~~DlVvda~Dn-----------------~~aR~~ln~~c~~~~i-PlI~~g~~ 142 (640)
T 1y8q_B 96 IMNPDYNVEFFRQFILVMNALDN-----------------RAARNHVNRMCLAADV-PLIESGTA 142 (640)
T ss_dssp TTSTTSCHHHHTTCSEEEECCSC-----------------HHHHHHHHHHHHHHTC-CEEEEEEE
T ss_pred cchhhhhHhhhcCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEEe
Confidence 86543334678899999988521 1223345556666663 56655444
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0028 Score=55.03 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=48.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC-HhHHHHHhc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD-YDAIAAAVT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~--~~ 78 (323)
.+.+|||+|+ |.||...++.+... |.+|+++++++ +..+.++++. .. +. .|..+ .+.++++-. ++
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~---~~~~~~~~lG---a~-~v--i~~~~~~~~~~~~~~g~g~ 239 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSK---KHRDFALELG---AD-YV--SEMKDAESLINKLTDGLGA 239 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCH---HHHHHHHHHT---CS-EE--ECHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCH---HHHHHHHHhC---CC-EE--eccccchHHHHHhhcCCCc
Confidence 4679999999 99999999988888 99999988753 2233333331 11 11 23323 333334332 68
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||.+++.
T Consensus 240 D~vid~~g~ 248 (344)
T 2h6e_A 240 SIAIDLVGT 248 (344)
T ss_dssp EEEEESSCC
T ss_pred cEEEECCCC
Confidence 999999874
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.019 Score=50.31 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=49.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHhc-CCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAVT-GCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~~-~~d 79 (323)
.+.+|||+||+|.+|...++.+...|.+|+++. ++ +..+.++++. .. +. .|..+.+ .+.++.. ++|
T Consensus 164 ~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~---~~~~~~~~lG---a~-~v--i~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 164 KPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SP---HNFDLAKSRG---AE-EV--FDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CG---GGHHHHHHTT---CS-EE--EETTSTTHHHHHHHHTTTCCC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CH---HHHHHHHHcC---Cc-EE--EECCCchHHHHHHHHccCCcc
Confidence 567899999999999999999999999999885 32 2233444432 11 12 2333332 2333322 589
Q ss_pred EEEEcccC
Q 020608 80 GVFHLASP 87 (323)
Q Consensus 80 ~Vih~a~~ 87 (323)
+||.++|.
T Consensus 234 ~v~d~~g~ 241 (371)
T 3gqv_A 234 YALDCITN 241 (371)
T ss_dssp EEEESSCS
T ss_pred EEEECCCc
Confidence 99999874
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0037 Score=51.66 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=48.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
++ +++|+|+ |.+|++++..|++.|. +|++.+|+++ ..+.+.. .+... ..+++.+.++++|+||
T Consensus 108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~------ka~~la~---~~~~~-----~~~~~~~~~~~aDiVI 171 (253)
T 3u62_A 108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIE------RAKALDF---PVKIF-----SLDQLDEVVKKAKSLF 171 (253)
T ss_dssp CS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHH------HHHTCCS---SCEEE-----EGGGHHHHHHTCSEEE
T ss_pred CC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHH------HHHHHHH---HcccC-----CHHHHHhhhcCCCEEE
Confidence 46 8999996 9999999999999998 8999998642 2222322 22211 2245666778899999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
++...
T Consensus 172 natp~ 176 (253)
T 3u62_A 172 NTTSV 176 (253)
T ss_dssp ECSST
T ss_pred ECCCC
Confidence 98754
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0063 Score=49.06 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=50.9
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++++++|||.|| |-+|...++.|++.|.+|++++.... .. ...+.. ..+++++..+.... .++++|.|
T Consensus 28 ~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~-~~-l~~l~~----~~~i~~i~~~~~~~-----dL~~adLV 95 (223)
T 3dfz_A 28 DLKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVS-AE-INEWEA----KGQLRVKRKKVGEE-----DLLNVFFI 95 (223)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCC-HH-HHHHHH----TTSCEEECSCCCGG-----GSSSCSEE
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCC-HH-HHHHHH----cCCcEEEECCCCHh-----HhCCCCEE
Confidence 467899999996 99999999999999999999976542 22 222211 12567776666532 25678999
Q ss_pred EEcc
Q 020608 82 FHLA 85 (323)
Q Consensus 82 ih~a 85 (323)
|-+.
T Consensus 96 IaAT 99 (223)
T 3dfz_A 96 VVAT 99 (223)
T ss_dssp EECC
T ss_pred EECC
Confidence 8554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 323 | ||||
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 2e-37 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-31 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 6e-30 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-29 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 7e-25 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-23 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 3e-22 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 3e-22 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 1e-21 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 1e-21 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 2e-19 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 8e-18 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 3e-17 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 5e-16 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 2e-15 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 6e-14 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 9e-14 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 6e-13 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 2e-12 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 1e-10 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 3e-10 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 3e-10 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 2e-09 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 2e-09 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 1e-08 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 3e-08 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 5e-08 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 7e-08 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 1e-07 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 3e-07 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 4e-07 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 7e-07 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 8e-07 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 1e-06 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-06 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 2e-06 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 2e-06 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 2e-06 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 3e-06 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 4e-06 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 6e-06 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 6e-06 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 7e-06 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 7e-06 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 7e-06 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 1e-05 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 1e-05 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 1e-05 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 1e-05 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 3e-05 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 3e-05 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 4e-05 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 4e-05 | |
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 4e-05 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 6e-05 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 1e-04 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 2e-04 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 2e-04 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 2e-04 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 2e-04 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 4e-04 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 4e-04 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 4e-04 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 4e-04 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 4e-04 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 5e-04 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 5e-04 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 7e-04 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 8e-04 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 0.001 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.001 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 0.002 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 0.002 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 0.003 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 0.003 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.003 |
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 134 bits (336), Expect = 2e-37
Identities = 82/336 (24%), Positives = 119/336 (35%), Gaps = 24/336 (7%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
E +V VTG +G + S +V LLE Y V T ++ S +
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69
Query: 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALGVKR 122
D+L A + G GV H V + ++++ PA+ GT+N L AA VKR
Sbjct: 70 DMLKQGAYDEVIKGAAGVAH---IASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKR 126
Query: 123 VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP----------LSKTLAEKA 172
V+TSS S DE W E + + SKT AE A
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELA 186
Query: 173 AWEFAKEKGL--DVVVVNPGTVMGPVIPPTLNA--SMLMLLRLLQGCTDTYEN--FFMGS 226
AW+F E + V P +G + P + + ++ L G
Sbjct: 187 AWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYY 246
Query: 227 VHFKDVALAHILVYENPSACG-RHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGL 285
V D+ L H+ P R + +A +LYP P D L
Sbjct: 247 VSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDL 306
Query: 286 --LRTKDGAKKLMDLGLQ-FIPMDQIIKDSVESLKA 318
T + L LG + +++ IKD V S A
Sbjct: 307 SKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 342
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (296), Expect = 1e-31
Identities = 59/321 (18%), Positives = 118/321 (36%), Gaps = 26/321 (8%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ +TGG+G +GS L L+ + V V N T + +E + +L++
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTV-VDNFF----TGRKRNVEH---WIGHENFELIN 55
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+D + ++HLASP + L GT+N+L AK +G R+++ S
Sbjct: 56 HDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 114
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
+ P + ED W Y K +AE + + K++G++V V
Sbjct: 115 TSEVYGDPEVHP----QSEDYWGHVNPIGPRA-CYDEGKRVAETMCYAYMKQEGVEVRVA 169
Query: 188 NPGTVMGP-VIPPTLNASMLMLLRLLQGCTDTYENFFMGS-----VHFKDVALAHILVYE 241
GP + +L+ LQG + + GS + D+ + +
Sbjct: 170 RIFNTFGPRMHMNDGRVVSNFILQALQG--EPLTVYGSGSQTRAFQYVSDLVNGLVALMN 227
Query: 242 NPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTK--DGAKKLMDLG 299
+ + +L +F + L + + D K + LG
Sbjct: 228 SNVSSPVNLGNPEEHTILEFAQLIKNLV-GSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 286
Query: 300 LQ-FIPMDQIIKDSVESLKAK 319
+ +P+++ + ++ + +
Sbjct: 287 WEPVVPLEEGLNKAIHYFRKE 307
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 113 bits (284), Expect = 6e-30
Identities = 74/321 (23%), Positives = 114/321 (35%), Gaps = 28/321 (8%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVK-----NLSDERETAHLKALEGADTRLRLFQ 62
+ VTGG+G IGS V LL Y + +L+ A+L ++ AD RLR
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD-ADPRLRFVH 61
Query: 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
D+ D +A + G + H A+ VD+ + V+GT +L A GV R
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 123 VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGL 182
VV S+ E + Y SK ++ A + + GL
Sbjct: 122 VVHVSTNQVYGSIDSGSWT----ESSPLEPNSP------YAASKAGSDLVARAYHRTYGL 171
Query: 183 DVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-----VHFKDVALAHI 237
DV + GP P L + LL G T + G+ VH D
Sbjct: 172 DVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGGTLPL--YGDGANVREWVHTDDHCRGIA 228
Query: 238 LVYENPSACGRHL--CVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTK-DGAKK 294
LV A + +++ + L ++ R D + LR DG K
Sbjct: 229 LVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKI 288
Query: 295 LMDLGLQ-FIPMDQIIKDSVE 314
+LG + + + +V
Sbjct: 289 ERELGYRPQVSFADGLARTVR 309
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 113 bits (284), Expect = 2e-29
Identities = 60/334 (17%), Positives = 106/334 (31%), Gaps = 31/334 (9%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ +TGG+G IGS +V +++ + L+ L + ++ R D+ D
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESN-RYNFEHADICD 61
Query: 68 YDAIAAAVTG--CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK---- 121
I V HLA+ VD+ + + GT +L A+
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 122 -----RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEF 176
R S+ P + E Y SK ++ +
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 177 AKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-----VHFKD 231
+ GL +V N GP P L++L L+G + G ++ +D
Sbjct: 182 RRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEG--KPLPIYGKGDQIRDWLYVED 238
Query: 232 VALAHILVYENPSACG--------RHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQP 283
A A +V A ++ + D + ++ Y +P
Sbjct: 239 HARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRP 298
Query: 284 GLLRTK--DGAKKLMDLGLQ-FIPMDQIIKDSVE 314
G R D K +LG + + I+ +VE
Sbjct: 299 GHDRRYAIDAGKISRELGWKPLETFESGIRKTVE 332
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 100 bits (250), Expect = 7e-25
Identities = 40/208 (19%), Positives = 70/208 (33%), Gaps = 23/208 (11%)
Query: 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL----EGADTR 57
SK V +TG +G GS+L LLE+ Y VH +K + T + + + +
Sbjct: 1 SK---VALITGVTGQDGSYLAEFLLEKGYEVHG-IKRRASSFNTERVDHIYQDPHTCNPK 56
Query: 58 LRLFQIDLLDYDAIAAAVTGC--TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA 115
L DL D + + V++L + V + + GT+ +L A
Sbjct: 57 FHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAI 116
Query: 116 KALGVK---RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKA 172
+ LG++ R S+ + P + E Y ++K A
Sbjct: 117 RFLGLEKKTRFYQASTSELYGLVQEIP----QKETTPFYPRSP------YAVAKLYAYWI 166
Query: 173 AWEFAKEKGLDVVVVNPGTVMGPVIPPT 200
+ + G+ P T
Sbjct: 167 TVNYRESYGMYACNGILFNHESPRRGET 194
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 96.6 bits (239), Expect = 2e-23
Identities = 52/316 (16%), Positives = 103/316 (32%), Gaps = 11/316 (3%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATV-KNLSDERETAHLKALEGADTRLRLFQIDLL 66
+ VTGG+G IGS V + VH TV L+ A+L+A+ G R+ L D+
Sbjct: 5 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG--DRVELVVGDIA 62
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
D + + + H A+ D + + ++ GT +L AA+ ++ V+
Sbjct: 63 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 122
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW-YPLSKTLAEKAAWEFAKEKGLDVV 185
+ + + N Y +K ++ + + G+
Sbjct: 123 TDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKAT 182
Query: 186 VVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG--SVHFKDVALAHILVYENP 243
+ N GP + L Y +H D + +
Sbjct: 183 ISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKG 242
Query: 244 SACGRHLCVEAISHYG-DFVAKVAELYPEYDIPRLPKDTQPG--LLRTKDGAKKLMDLGL 300
+L + + + E + + G L D +K +LG
Sbjct: 243 RMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGW 302
Query: 301 --QFIPMDQIIKDSVE 314
QF + ++++++
Sbjct: 303 TPQFTDFSEGLEETIQ 318
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 92.6 bits (229), Expect = 3e-22
Identities = 46/332 (13%), Positives = 88/332 (26%), Gaps = 52/332 (15%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V + G G +GS + L +R +++LLD
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQRGDVELVLR----------------------TRDELNLLD 42
Query: 68 YDAIAAAVTG--CTGVFHLASPCIVDKV-EDPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124
A+ V+ A+ + + N++ AA V +++
Sbjct: 43 SRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLL 102
Query: 125 VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDV 184
S K P E NE Y ++K K + ++ G D
Sbjct: 103 FLGSSCIYPKLAKQP----MAESELLQGTLEPTNE-PYAIAKIAGIKLCESYNRQYGRDY 157
Query: 185 VVVNPGTVMGP----VIPPTLNASMLMLLRLLQGCTDTYENFFMGS---------VHFKD 231
V P + GP + L+ + GS V
Sbjct: 158 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMA 217
Query: 232 VALAHILVYENPSACGRHLCVEAISHYG--------DFVAKVAELYPEYDIPRLPKDTQP 283
A H++ + + + + G + +A++
Sbjct: 218 AASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPD 277
Query: 284 GLLRTKDGAKKLMDLGLQ-FIPMDQIIKDSVE 314
G R +L LG I ++ + + +
Sbjct: 278 GTPRKLLDVTRLHQLGWYHEISLEAGLASTYQ 309
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 93.5 bits (231), Expect = 3e-22
Identities = 44/317 (13%), Positives = 94/317 (29%), Gaps = 22/317 (6%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ +TG G I S + L + V A +E T + E +DL
Sbjct: 18 ISITGAGGFIASHIARRLKHEGHYVIA-SDWKKNEHMTEDMFCDE-------FHLVDLRV 69
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLL-NPAVKGTVNVLTAAKALGVKRVVVT 126
+ G VF+LA+ + ++ + N++ AA+ G+KR
Sbjct: 70 MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYA 129
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVV 186
SS + V + + + + + L K E+ + K+ G++ +
Sbjct: 130 SSACIYPEFKQLETTNV---SLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRI 186
Query: 187 VNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-------VHFKDVALAHILV 239
+ GP + T T G + + +
Sbjct: 187 GRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRL 246
Query: 240 YENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTK-DGAKKLMDL 298
++ ++ + + + V E +P G+ D L
Sbjct: 247 TKSDFREPVNIGSDEMVSMNEMAEMVLSFE-EKKLPIHHIPGPEGVRGRNSDNNLIKEKL 305
Query: 299 GLQ-FIPMDQIIKDSVE 314
G + + + ++ +
Sbjct: 306 GWAPNMRLKEGLRITYF 322
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.6 bits (226), Expect = 1e-21
Identities = 40/204 (19%), Positives = 65/204 (31%), Gaps = 21/204 (10%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL-----EGADTRLRLF 61
V +TG +G GS+L LLE+ Y VH + S T ++ L + ++L
Sbjct: 3 VALITGITGQDGSYLAEFLLEKGYEVHG-IVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH 61
Query: 62 QIDLLDYDAIAAAV--TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
DL D + + T +++L + V D + GT+ +L A K G
Sbjct: 62 YGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCG 121
Query: 120 V---KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEF 176
+ + S+ + P E Y +K A F
Sbjct: 122 LINSVKFYQASTSELYGKVQEIP----------QKETTPFYPRSPYGAAKLYAYWIVVNF 171
Query: 177 AKEKGLDVVVVNPGTVMGPVIPPT 200
+ L V P
Sbjct: 172 REAYNLFAVNGILFNHESPRRGAN 195
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 90.8 bits (224), Expect = 1e-21
Identities = 51/322 (15%), Positives = 95/322 (29%), Gaps = 25/322 (7%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
VTG +G G++L LLLE+ Y VH V S + L+ L G + ++ D+ D
Sbjct: 3 ALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT-RWRLREL-GIEGDIQYEDGDMAD 60
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQL--LNPAVKGTVNVLTAAKALGVKRVVV 125
++ AV + G ++L A + +
Sbjct: 61 ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY 120
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVV 185
+S S + + DE Y ++K + + GL
Sbjct: 121 QASTSEMFGLIQAE---------RQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHAS 171
Query: 186 VVNPGTVMGPVIPPTLNASMLM--LLRLLQGCTDTYE----NFFMGSVHFKDVALAHILV 239
P+ + + R+ G + D A L+
Sbjct: 172 SGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLM 231
Query: 240 YENPSACGRHL---CVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTK--DGAKK 294
+ A + + + L + P +P + + AK
Sbjct: 232 LQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKA 291
Query: 295 LMDLGLQF-IPMDQIIKDSVES 315
LG + +D++I+ VE+
Sbjct: 292 QRVLGWKPRTSLDELIRMMVEA 313
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 85.6 bits (210), Expect = 2e-19
Identities = 56/333 (16%), Positives = 106/333 (31%), Gaps = 28/333 (8%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ +TGG G +GS L S L + + NLS + T +L L D+ +
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIV-FDNLSRKGATDNLHWLSSLG-NFEFVHGDIRN 60
Query: 68 YDAIAAAVTGC--TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
+ + +T FHLA + D V GT+N+L A + ++
Sbjct: 61 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120
Query: 126 TSSISSI-------TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAK 178
SS + + + D+ DE Y SK A++ ++A+
Sbjct: 121 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 180
Query: 179 EKGLDVVVVNPGTVMG-----PVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-----VH 228
GL+ VV ++ G + + + G + G +H
Sbjct: 181 IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH 240
Query: 229 FKDVALAHILVYENPS-ACGRHLCVEAISHYGDFVAKVAEL---YPEYDIPRLPKDTQPG 284
+D+ + N S G + + ++ +L Y D+ +
Sbjct: 241 AEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRES 300
Query: 285 LLRTK--DGAKKLMDLGLQ-FIPMDQIIKDSVE 314
R D K + + ++ +
Sbjct: 301 DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYD 333
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 80.4 bits (197), Expect = 8e-18
Identities = 59/326 (18%), Positives = 112/326 (34%), Gaps = 20/326 (6%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTGGSG IGS LL+ + V + NL + + + + D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVII-LDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 68 YDAIAAAV--TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
+ + V H A V + + + V GT+ +++A +A VK +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVV 185
+SS + PK P + + + L+ + W A + + V
Sbjct: 122 SSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPV 181
Query: 186 VVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS-----------VHFKDVAL 234
+P MG N M + ++ G D+ F +H D+A
Sbjct: 182 GAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLAD 241
Query: 235 AHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPE---YDIPRLPKDTQPGLLRTK-- 289
H++ E + + G+ V V + + + + G L
Sbjct: 242 GHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWA 301
Query: 290 DGAKKLMDLGLQ-FIPMDQIIKDSVE 314
D +K +L + +D++ +D+
Sbjct: 302 DASKADRELNWRVTRTLDEMAQDTWH 327
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 79.0 bits (193), Expect = 3e-17
Identities = 47/344 (13%), Positives = 95/344 (27%), Gaps = 36/344 (10%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA-----DTRLRLF 61
+ +TG +G GS+L LL + Y VH + S T + + ++L
Sbjct: 3 IALITGITGQDGSYLTEFLLGKGYEVHG-LIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61
Query: 62 QIDLLDYDAIAAAV--TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
DL D ++ + V++LA+ V + + + G + +L A ++
Sbjct: 62 YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 121
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE 179
+ + + + E Y SK A + +
Sbjct: 122 IDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRS------PYAASKCAAHWYTVNYREA 175
Query: 180 KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILV 239
GL P + + F +D A V
Sbjct: 176 YGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYV 235
Query: 240 YENP---------SACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTK- 289
+ + D L + + + +P +
Sbjct: 236 EAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQ 295
Query: 290 -DGAKKLMDLGLQF-IPMDQIIKDSVES----------LKAKGF 321
D +K LG + + ++++K V+ L G+
Sbjct: 296 GDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGY 339
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 75.4 bits (184), Expect = 5e-16
Identities = 59/334 (17%), Positives = 113/334 (33%), Gaps = 31/334 (9%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD--ERETAHLKAL--EGADT 56
+ + +V +TG +G IGS L+ LL+ V + N + +R +++L E +
Sbjct: 12 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVG-LDNFATGHQRNLDEVRSLVSEKQWS 70
Query: 57 RLRLFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAK 116
+ Q D+ + D A G V H A+ V + + + G +N+L AA+
Sbjct: 71 NFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAAR 130
Query: 117 ALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEF 176
V+ +S S+ P P K ED Y ++K + E A F
Sbjct: 131 DAKVQSFTYAASSSTYGDHPGLP----KVEDTIGKPLSP------YAVTKYVNELYADVF 180
Query: 177 AKEKGLDVVVVNPGTVMGPVIPPTLNASMLM---LLRLLQG-----CTDTYENFFMGSVH 228
++ G + + V G P + ++ ++QG D + +
Sbjct: 181 SRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIE 240
Query: 229 FKDVALAHILVYENPSACGRHLCVEAISH-YGDFVAKVAELYPE----YDIPRLPKDTQP 283
A + + + + E Y + +D +
Sbjct: 241 NTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFRE 300
Query: 284 GLLRTK--DGAKKLMDLGLQ-FIPMDQIIKDSVE 314
G +R D +K LG + + ++
Sbjct: 301 GDVRHSLADISKAAKLLGYAPKYDVSAGVALAMP 334
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.9 bits (180), Expect = 2e-15
Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 14/195 (7%)
Query: 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLF 61
SK +V VTGG+G IGS V L+E Y NLS+ + + + +
Sbjct: 1 SK---IVLVTGGAGYIGSHTVVELIENGYDCVV-ADNLSNSTYDSVARLEVLTKHHIPFY 56
Query: 62 QIDLLDYDAIAAAVT--GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
++DL D + V H A V + + + + GTV +L +
Sbjct: 57 EVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN 116
Query: 120 VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEF--A 177
V + V +SS + + ++P E+C Y +K E + +
Sbjct: 117 VSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNP------YGHTKYAIENILNDLYNS 170
Query: 178 KEKGLDVVVVNPGTV 192
+K ++
Sbjct: 171 DKKSWKFAILRYFNP 185
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 69.0 bits (167), Expect = 6e-14
Identities = 29/241 (12%), Positives = 62/241 (25%), Gaps = 31/241 (12%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V + GG+G IG +V+ + + + + L +L + L D
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD 65
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+ + A+ V + ++ Q +L+ +A +KR +
Sbjct: 66 HQRLVDALKQVDVVISALAGGVLSHHILEQLKLVE----------AIKEAGNIKRFLP-- 113
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
S P ++ ++ + + V
Sbjct: 114 --SEFGMDPDIMEHALQPGSITFIDKRK-----------------VRRAIEAASIPYTYV 154
Query: 188 NPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACG 247
+ G M+ + N V DV I ++P
Sbjct: 155 SSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLN 214
Query: 248 R 248
+
Sbjct: 215 K 215
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.0 bits (162), Expect = 9e-14
Identities = 36/245 (14%), Positives = 65/245 (26%), Gaps = 49/245 (20%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ + G +G G ++ ++ Y V V++ S + + D+L
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS--------RLPSEGPRPAHVVVGDVLQ 57
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+ V G V L +G N++ A KA GV +VV +
Sbjct: 58 AADVDKTVAGQDAVIVLLGT-------RNDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
S + K P + T + +E GL V V
Sbjct: 111 SAFLLWDPTKVP---------------------PRLQAVTDDHIRMHKVLRESGLKYVAV 149
Query: 188 NPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACG 247
P + P T ++ + + D+ + G
Sbjct: 150 MPPHIGDQ--PLTGAYTVTL-----------DGRGPSRVISKHDLGHFMLRCLTTDEYDG 196
Query: 248 RHLCV 252
Sbjct: 197 HSTYP 201
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 66.6 bits (161), Expect = 6e-13
Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQ 62
++ + + V G +G G+ L+ + + V A V +L L+A+ LFQ
Sbjct: 1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI-AEELQAIPNVT----LFQ 55
Query: 63 IDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKR 122
LL+ + + + + + + ++ AAK G +
Sbjct: 56 GPLLNNVPLMDTLFEGAHLAFINTTSQAG-----------DEIAIGKDLADAAKRAGTIQ 104
Query: 123 VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164
+ SS+ + WPA + + + +
Sbjct: 105 HYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFV 146
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 64.1 bits (154), Expect = 2e-12
Identities = 39/244 (15%), Positives = 72/244 (29%), Gaps = 29/244 (11%)
Query: 8 VCVTGGSGCIGSWLVSLLLER--RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL 65
V VTG SG G + L E ++ V++ + + +F D+
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG---------EADVFIGDI 56
Query: 66 LDYDAIAAAVTGCTGVFHLASPCIVDKVE-DPQNQLLNPAVKGTVNVLTAAKALGVKRVV 124
D D+I A G + L S K DP + +G K +
Sbjct: 57 TDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 116
Query: 125 VTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDV 184
+ ++ + + + D ++ +W A ++ + G
Sbjct: 117 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKR--------KAEQYLADSGTPY 168
Query: 185 VVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS 244
++ G ++ + LL G D +V DVA I
Sbjct: 169 TIIRAGGLLDK---------EGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEE 219
Query: 245 ACGR 248
A +
Sbjct: 220 AKNK 223
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 59.1 bits (141), Expect = 1e-10
Identities = 53/323 (16%), Positives = 100/323 (30%), Gaps = 19/323 (5%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V VTG +G G WL L TV L ++ D+ D
Sbjct: 11 VFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV---PSLFETARVADGMQSEIGDIRD 67
Query: 68 YDAI--AAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
+ + + VFH+A+ +V + + V GTV +L A + +G + VV
Sbjct: 68 QNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVV 127
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAE-KAAWEFAKEKGLDV 184
+ + +W ++E + Y ++ + + G V
Sbjct: 128 NITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAV 187
Query: 185 VVVNPGTVMGP-------VIPPTLNAS---MLMLLRLLQGCTDTYENFFMGSVHFKDVAL 234
V G V+G ++P L A +++R S +
Sbjct: 188 ATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQK 247
Query: 235 AHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTK--DGA 292
+ E + + V ++ + + E +L + P D +
Sbjct: 248 LYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCS 307
Query: 293 KKLMDLGLQ-FIPMDQIIKDSVE 314
K M LG ++ ++ V
Sbjct: 308 KAKMQLGWHPRWNLNTTLEYIVG 330
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 57.9 bits (138), Expect = 3e-10
Identities = 32/266 (12%), Positives = 72/266 (27%), Gaps = 43/266 (16%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLL 66
+ + G +G IG + L+ + V+ + + + LE + + +
Sbjct: 6 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 65
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
D+ ++ AV V ++ VN++ A K +G +
Sbjct: 66 DHASLVEAVKNVDVVISTVGSLQIES---------------QVNIIKAIKEVGTVKRFFP 110
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVV 186
S D + + +G+
Sbjct: 111 SEFG-----------NDVDNVHAVEPAKSVFEVKAKV----------RRAIEAEGIPYTY 149
Query: 187 VNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSAC 246
V+ G + A + + N + V +D+ I ++P
Sbjct: 150 VSSNCFAGYFLRSLAQAGLTA-PPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTL 208
Query: 247 GRHLCV----EAISHYGDFVAKVAEL 268
+ L + +S + VA +
Sbjct: 209 NKTLYLRLPANTLS-LNELVALWEKK 233
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (139), Expect = 3e-10
Identities = 57/349 (16%), Positives = 111/349 (31%), Gaps = 49/349 (14%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD------ERETAHLKALEGA 54
M+++ V VTGG+G IGS V LLE Y + N + + + E
Sbjct: 1 MAEK---VLVTGGAGYIGSHTVLELLEAGYLPVV-IDNFHNAFRGGGSLPESLRRVQELT 56
Query: 55 DTRLRLFQIDLLDYDAIAAAVTGCTGVFHL---ASPCIVDKVEDPQNQLLNPAVKGTVNV 111
+ ++D+LD A+ + + + + + V+ P + GT+ +
Sbjct: 57 GRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPL-DYYRVNLTGTIQL 115
Query: 112 LTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK 171
L KA GVK + S + Y SK E+
Sbjct: 116 LEIMKAHGVKN---------LVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEE 166
Query: 172 AAWEFAK-EKGLDVVVVNPGTVMGP-----------VIPPTLNASMLMLLRLLQGCTDTY 219
+ + +K + V++ G IP L + + + + +
Sbjct: 167 MIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVF 226
Query: 220 ENFFMGS--------VHFKDVALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPE 271
N + +H D+A HI + G V ++ + +
Sbjct: 227 GNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEK 286
Query: 272 ---YDIPRLPKDTQPGLLRTK--DGAKKLMDLGLQ-FIPMDQIIKDSVE 314
IP + G + + + +LG + +D++ +D
Sbjct: 287 ASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWR 335
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.0 bits (132), Expect = 2e-09
Identities = 32/199 (16%), Positives = 54/199 (27%), Gaps = 26/199 (13%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTG + IG LL + V NL + + + Q D+
Sbjct: 5 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA 64
Query: 67 DYDAIAAAVT-------GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG 119
D + + + A E L + GT L
Sbjct: 65 DQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQN 124
Query: 120 VK---RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEF 176
++ SS++ + P + P YC +++ A A
Sbjct: 125 GGEGGIIINMSSLAGLMPVAQQPV-------------YCASKHGIVGFTRSAA--LAANL 169
Query: 177 AKEKGLDVVVVNPGTVMGP 195
G+ + + PG V
Sbjct: 170 MN-SGVRLNAICPGFVNTA 187
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 55.8 bits (132), Expect = 2e-09
Identities = 59/363 (16%), Positives = 92/363 (25%), Gaps = 54/363 (14%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL---------------- 51
V V GG G G L ++ Y V V NL L
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCI-VDNLVRRLFDHQLGLESLTPIASIHDRISRWK 62
Query: 52 EGADTRLRLFQIDLLDYDAIAAAV-----TGCTGVFHLASPCIVDKVEDPQNQLLNPAVK 106
+ L+ D+ D++ +A + S + V
Sbjct: 63 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVI 122
Query: 107 GTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE----YCRQNEIWY 162
GT+NVL A K G + +V +P ++ Y +Q +Y
Sbjct: 123 GTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFY 182
Query: 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT---- 218
LSK K G+ +N G V G T L T
Sbjct: 183 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNR 242
Query: 219 ---------------YENFFMGSVHFKDVALAHILVYENPSACGRHLCVEA------ISH 257
G + +D + NP+ G ++
Sbjct: 243 FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNE 302
Query: 258 YGDFVAKVAELYP-EYDIPRLPKDTQPG-LLRTKDGAKKLMDLGLQF-IPMDQIIKDSVE 314
V K + +P KLM+LGL+ D ++ +
Sbjct: 303 LASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLN 362
Query: 315 SLK 317
Sbjct: 363 FAV 365
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (126), Expect = 1e-08
Identities = 32/208 (15%), Positives = 56/208 (26%), Gaps = 36/208 (17%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+V +TG IG + + + N ETA +G ++ F +D
Sbjct: 9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETA--AKCKGLGAKVHTFVVDCS 66
Query: 67 DYDAIAAAVTGCTGVF------------HLASPCIVDKVEDPQNQL-LNPAVKGTVNVLT 113
+ + I ++ S + + +N V
Sbjct: 67 NREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVN--VLAHFWTTK 124
Query: 114 AAKALGVK----RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLA 169
A K +V +S + P A YC KTL
Sbjct: 125 AFLPAMTKNNHGHIVTVASAAGHVSVPFLLA-------------YCSSKFAAVGFHKTLT 171
Query: 170 EKAAWEFAKEKGLDVVVVNPGTVMGPVI 197
++ A + G+ + P V I
Sbjct: 172 DELAAL--QITGVKTTCLCPNFVNTGFI 197
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 3e-08
Identities = 47/203 (23%), Positives = 67/203 (33%), Gaps = 35/203 (17%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHL----KALEGADTRLRLFQ 62
VV +TG S IG L L L D + L +AL L Q
Sbjct: 4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQ 63
Query: 63 IDLLDYDAIAAAVTGCTGVF---------HLASPCIVDKVEDPQNQLLNPAVKGTVNVLT 113
+D+ D ++AAA T + ED +L+ V GTV +L
Sbjct: 64 LDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQ 123
Query: 114 AA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLA 169
A K G RV+VT S+ + P YC L ++L
Sbjct: 124 AFLPDMKRRGSGRVLVTGSVGGLMGLPFNDV-------------YCASKFALEGLCESL- 169
Query: 170 EKAAWEFAKEKGLDVVVVNPGTV 192
A G+ + ++ G V
Sbjct: 170 ---AVLLLP-FGVHLSLIECGPV 188
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 51.2 bits (120), Expect = 5e-08
Identities = 44/312 (14%), Positives = 96/312 (30%), Gaps = 14/312 (4%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ VTGG+G IGS +V L ++ T V NL D + +L L AD + + D L
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIAD---YMDKEDFLI 58
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+FH E +++ + + +L + + +S
Sbjct: 59 QIMAGEEFGDVEAIFHEG--ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 116
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
+ + + + + ++ + + A F
Sbjct: 117 AATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREG 176
Query: 188 NPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACG 247
+ G++ + +L +G + +F + DVA ++ EN +
Sbjct: 177 HKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFV----YVGDVADVNLWFLENGVSGI 232
Query: 248 RHLCVEAISHYGDFVAKVAELYPEYDIPRLP--KDTQPGLLR-TKDGAKKLMDLG--LQF 302
+L + + + I +P + T+ L G F
Sbjct: 233 FNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPF 292
Query: 303 IPMDQIIKDSVE 314
+ + + + +
Sbjct: 293 KTVAEGVTEYMA 304
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (120), Expect = 7e-08
Identities = 31/211 (14%), Positives = 60/211 (28%), Gaps = 41/211 (19%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+ VTG SG IG+ + L+++ V + + + E A G L ++ DL
Sbjct: 12 LALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 71
Query: 67 DYDAIAAAVT-------GCTGVFHLASPCIVDKVEDP----QNQLLNPAVKGTVNVLTAA 115
+ + I + + G + A D + + N V A
Sbjct: 72 NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREA 131
Query: 116 KALGVK------RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLA 169
+ ++ +S+S P +Y +K
Sbjct: 132 YQSMKERNVDDGHIININSMSGHRVLP-------------------LSVTHFYSATKYAV 172
Query: 170 EKAAWEFAKE-----KGLDVVVVNPGTVMGP 195
+E + ++PG V
Sbjct: 173 TALTEGLRQELREAQTHIRATCISPGVVETQ 203
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 49.6 bits (118), Expect = 1e-07
Identities = 26/208 (12%), Positives = 51/208 (24%), Gaps = 43/208 (20%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTG IG + +L + V + ++ + D+
Sbjct: 12 VALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVV--DEIKSFGYESSGYAGDVS 69
Query: 67 DYDAIAAAV-----------TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA 115
+ I+ + + D +L + +
Sbjct: 70 KKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPI 129
Query: 116 KALGVK----RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----T 167
+ R++ SSI +T + Y SK
Sbjct: 130 SKRMINNRYGRIINISSIVGLTGNVGQAN---------------------YSSSKAGVIG 168
Query: 168 LAEKAAWEFAKEKGLDVVVVNPGTVMGP 195
+ A E A + + V + PG +
Sbjct: 169 FTKSLAKELAS-RNITVNAIAPGFISSD 195
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 48.9 bits (116), Expect = 3e-07
Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 43/219 (19%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M + E V +TGG+ +G LV + V K+ A L+ G +
Sbjct: 1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS---AERLAELETDHGD--NVLG 55
Query: 61 FQIDLLDYDAIAAAVT----------------GCTGVFHLASPCIVDKVEDPQNQLLNPA 104
D+ + A + G + ++ +++ +
Sbjct: 56 IVGDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHIN 115
Query: 105 VKGTVNVLTAAKALGVKR---VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161
VKG ++ + A V V+ T S + P+ P Y
Sbjct: 116 VKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPL-------------YTAAKHAI 162
Query: 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT 200
L + LA + A + V V G + + P+
Sbjct: 163 VGLVRELAFELAP------YVRVNGVGSGGINSDLRGPS 195
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (115), Expect = 4e-07
Identities = 32/213 (15%), Positives = 63/213 (29%), Gaps = 46/213 (21%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETA-HLKALEGADTRLRLFQIDL 65
V +TG S IG L V T ++ ET + A ++ + D+
Sbjct: 7 VAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV 66
Query: 66 LDYDAIAAAVT-------GCTGVFHLASPCIVDKVEDPQ--------NQLLNPAVKGTVN 110
++ + + A I D + LN ++ +
Sbjct: 67 TTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIA 126
Query: 111 VLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK 166
+ A + + V ++S S + +P +P Y ++K
Sbjct: 127 LTKKAVPHLSSTKGEIVNISSIASGLHATPDFPY---------------------YSIAK 165
Query: 167 ----TLAEKAAWEFAKEKGLDVVVVNPGTVMGP 195
A + + G+ V ++PG V
Sbjct: 166 AAIDQYTRNTAIDLIQ-HGIRVNSISPGLVATG 197
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (112), Expect = 7e-07
Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 36/201 (17%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTG IG V L V A + +D + G + +DL
Sbjct: 9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLV--RECPGIEP----VCVDLG 62
Query: 67 DYDAIAAAVTGCTGVFHL-------ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA---- 115
D++A A+ V L ++ ++ ++ ++ + V
Sbjct: 63 DWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGL 122
Query: 116 -KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAW 174
+V SS S YC L+K +A
Sbjct: 123 IARGVPGAIVNVSSQCSQRAVTNHSV-------------YCSTKGALDMLTKVMAL---- 165
Query: 175 EFAKEKGLDVVVVNPGTVMGP 195
E + V VNP VM
Sbjct: 166 ELGP-HKIRVNAVNPTVVMTS 185
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 47.0 bits (111), Expect = 8e-07
Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 40/207 (19%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
VV VTG S IG + L + V + E K +E + F D+
Sbjct: 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEV-SKQIEAYGGQAITFGGDVS 61
Query: 67 DYDAIAAAV-----------TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA 115
+ A + ++ + +++++ + G AA
Sbjct: 62 KEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAA 121
Query: 116 KALGVK----RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK 171
+ +K R++ +S+ + + Y +K
Sbjct: 122 TKIMMKKRKGRIINIASVVGLIGNIGQAN---------------------YAAAKAGVIG 160
Query: 172 AAWEFAKE---KGLDVVVVNPGTVMGP 195
+ A+E + ++V VV PG +
Sbjct: 161 FSKTAAREGASRNINVNVVCPGFIASD 187
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 46.6 bits (110), Expect = 1e-06
Identities = 30/208 (14%), Positives = 56/208 (26%), Gaps = 30/208 (14%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M + V G IG L++R + + + A LKA +
Sbjct: 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA-INPKVNITF 59
Query: 61 FQIDLL----DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAK 116
D+ + + + + + + + G VN TA
Sbjct: 60 HTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAIL 119
Query: 117 ALGVKR-------VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLA 169
KR + S++ + P Y + +LA
Sbjct: 120 DFWDKRKGGPGGIIANICSVTGFNAIHQVPV-------------YSASKAAVVSFTNSLA 166
Query: 170 EKAAWEFAKEKGLDVVVVNPGTVMGPVI 197
+ A G+ +NPG P++
Sbjct: 167 KLAP-----ITGVTAYSINPGITRTPLV 189
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 47.1 bits (110), Expect = 1e-06
Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 16/204 (7%)
Query: 8 VCVTGGSGCIGSWLVSLLLERR-YTVH---------------ATVKNLSDERETAHLKAL 51
V V GG+G IGS V LL ++V T +N++ + + +
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 52 EGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNV 111
AD L D+ + D + T + + C V + L V +
Sbjct: 65 PWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGI 124
Query: 112 LTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK 171
L +A+ + + SS V D + E Y SK +AE+
Sbjct: 125 LRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAER 184
Query: 172 AAWEFAKEKGLDVVVVNPGTVMGP 195
+ A+ G+ + + G
Sbjct: 185 MIRDCAEAYGIKGICLRYFNACGA 208
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.7 bits (108), Expect = 2e-06
Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 36/201 (17%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
VTG IG V L V A + SD A K G + +DL
Sbjct: 7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLA--KECPGIEP----VCVDLG 60
Query: 67 DYDAIAAAVTGCTGV---FHLASPCIVDKVED----PQNQLLNPAVKGTVNVLTAA---- 115
D+DA A+ G V + A+ I+ + ++ + ++ V
Sbjct: 61 DWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDM 120
Query: 116 -KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAW 174
+V SS+ + P Y L+K +A
Sbjct: 121 INRGVPGSIVNVSSMVAHVTFPNLIT-------------YSSTKGAMTMLTKAMAM---- 163
Query: 175 EFAKEKGLDVVVVNPGTVMGP 195
E + V VNP V+
Sbjct: 164 ELGP-HKIRVNSVNPTVVLTD 183
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 46.1 bits (109), Expect = 2e-06
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 38/209 (18%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAH-LKALEGADTRLRLFQIDL 65
V +TG S IG L + V T ++ ET + ++ ++ D+
Sbjct: 7 TVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADV 66
Query: 66 LDYDAIAAAVTGC---------------TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVN 110
D + + D+ D ++ L ++ +
Sbjct: 67 TTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIE 126
Query: 111 VLTAAKALGVK----RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK 166
+ K V V V+S ++ P + Y ++
Sbjct: 127 MTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLY-------------YAIAKAALDQYTR 173
Query: 167 TLAEKAAWEFAKEKGLDVVVVNPGTVMGP 195
+ A + AK G+ V V+PG V
Sbjct: 174 ST----AIDLAK-FGIRVNSVSPGMVETG 197
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (108), Expect = 2e-06
Identities = 37/204 (18%), Positives = 63/204 (30%), Gaps = 39/204 (19%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
VV VTGG IG+ +V + V +++ + +ALE D+
Sbjct: 8 VVVVTGGGRGIGAGIVRAFVNSGARVVIC------DKDESGGRALEQELPGAVFILCDVT 61
Query: 67 DYDAIAAAVT-----------GCTGVFHLASPCIVDKVEDPQ-NQLLNPAVKGTVNVLTA 114
D + V+ H P ++ QLL + GT +
Sbjct: 62 QEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKL 121
Query: 115 AKALGVK---RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK 171
A K V+ SS+ + Y ++K LA
Sbjct: 122 ALPYLRKSQGNVINISSLVGAIGQAQAVP-------------YVATKGAVTAMTKALAL- 167
Query: 172 AAWEFAKEKGLDVVVVNPGTVMGP 195
+ + G+ V ++PG + P
Sbjct: 168 ---DESP-YGVRVNCISPGNIWTP 187
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 45.5 bits (107), Expect = 3e-06
Identities = 33/205 (16%), Positives = 63/205 (30%), Gaps = 16/205 (7%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
+S + + VTGG+ IG + V ++ +D E K + + +
Sbjct: 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTE-KVGKEFGVKTKA 63
Query: 61 FQIDLLDYDAIAAAV----------TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVN 110
+Q D+ + D + + +G ++ ++ + V
Sbjct: 64 YQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVF 123
Query: 111 VLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAE 170
A A + SI + ++ T Y L K L
Sbjct: 124 NTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGL-- 181
Query: 171 KAAWEFAKEKGLDVVVVNPGTVMGP 195
A E+A G+ V ++PG V
Sbjct: 182 --AAEWAS-AGIRVNALSPGYVNTD 203
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 45.0 bits (106), Expect = 4e-06
Identities = 37/209 (17%), Positives = 61/209 (29%), Gaps = 44/209 (21%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
VTGGS IG +V L +V+ +N + + ++ DL
Sbjct: 10 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCL--TQWRSKGFKVEASVCDLS 67
Query: 67 DYDAIAAAVTGCTGVFHLASPCIV------------DKVEDPQNQLLNPAVKGTVNVLTA 114
+ FH +V D + + +++ + ++
Sbjct: 68 SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVL 127
Query: 115 A----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK---- 166
A KA VV SS+S P Y +K
Sbjct: 128 AHPFLKASERGNVVFISSVSGALAVPYEA---------------------VYGATKGAMD 166
Query: 167 TLAEKAAWEFAKEKGLDVVVVNPGTVMGP 195
L A+E+AK + V V PG +
Sbjct: 167 QLTRCLAFEWAK-DNIRVNGVGPGVIATS 194
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 44.8 bits (104), Expect = 6e-06
Identities = 34/317 (10%), Positives = 72/317 (22%), Gaps = 47/317 (14%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ +TG +G +G + L + V T +D+ +
Sbjct: 4 ILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITN 40
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
A+ + +N + V
Sbjct: 41 VLAVNKFFNEKKPNVV----INCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAE 96
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
+ T + E + Y +K E +V
Sbjct: 97 IVQISTDYVFDG-----EAKEPITEFDEVNPQSAYGKTKLEGENFVKAL----NPKYYIV 147
Query: 188 NPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSACG 247
+ G L + D+A + V + +
Sbjct: 148 RTAWLYGDGNNFVKTMINLGKTH---DELKVVHDQVGTPTSTVDLARVVLKVIDEKNYGT 204
Query: 248 RHLCVEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMD-------LGL 300
H + I + DF ++ L D+ P T+ K ++ G
Sbjct: 205 FHCTCKGICSWYDFAVEIFRLT-GIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGD 263
Query: 301 QFIPMDQIIKDSVESLK 317
+ +K+ ++ L+
Sbjct: 264 ITREWKESLKEYIDLLQ 280
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 44.7 bits (105), Expect = 6e-06
Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 37/214 (17%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V +TGG+G IG L + V ++ G+ + D+
Sbjct: 8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVC---NNIGSPDVISFVHCDVT 64
Query: 67 DYDAIAAAVT-------------GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLT 113
+ + V G GV I++ + ++++ V G V
Sbjct: 65 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAK 124
Query: 114 AAKALGVKR----VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLA 169
A + + +V T+SISS T Y L+ +L
Sbjct: 125 HAARVMIPAKKGSIVFTASISSFTAGEGVSHV------------YTATKHAVLGLTTSL- 171
Query: 170 EKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNA 203
E + G+ V V+P V P++
Sbjct: 172 ---CTELGE-YGIRVNCVSPYIVASPLLTDVFGV 201
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 44.5 bits (104), Expect = 7e-06
Identities = 31/211 (14%), Positives = 60/211 (28%), Gaps = 25/211 (11%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
MS V VTG + IG LV L++ + H + + D+R+ +
Sbjct: 1 MSPG--SVVVTGANRGIGLGLVQQLVKDKNIRHII---ATARDVEKATELKSIKDSRVHV 55
Query: 61 FQIDLLDYDAIAAAVT------GCTGVFHLASPC--------IVDKVEDPQNQLLNPAVK 106
+ + ++ V+ G G+ L + + + L+
Sbjct: 56 LPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTT 115
Query: 107 GTVNVLTAA-KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLS 165
V + L + S++ + + + Y +S
Sbjct: 116 SVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMS 175
Query: 166 KT----LAEKAAWEFAKEKGLDVVVVNPGTV 192
K A + + VV PG V
Sbjct: 176 KAAINMFGRTLAVDLKD-DNVLVVNFCPGWV 205
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 44.4 bits (105), Expect = 7e-06
Identities = 31/210 (14%), Positives = 52/210 (24%), Gaps = 53/210 (25%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTGG+ IG + V + + FQ+DL
Sbjct: 7 GVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGG--------AFFQVDLE 58
Query: 67 DYDAIAAAVTG-------------CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLT 113
D V + S + ++L + +++
Sbjct: 59 DERERVRFVEEAAYALGRVDVLVNNAAIAAPGS--ALTVRLPEWRRVLEVNLTAPMHLSA 116
Query: 114 AAKALGVKR----VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK--- 166
A K +V +S+ + + A Y SK
Sbjct: 117 LAAREMRKVGGGAIVNVASVQGLFAEQENAA---------------------YNASKGGL 155
Query: 167 -TLAEKAAWEFAKEKGLDVVVVNPGTVMGP 195
L A + A + V V PG +
Sbjct: 156 VNLTRSLALDLAP-LRIRVNAVAPGAIATE 184
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 44.2 bits (104), Expect = 7e-06
Identities = 39/220 (17%), Positives = 66/220 (30%), Gaps = 35/220 (15%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V +TGG+ IG + + +E V T ++ + A G +++ FQ D
Sbjct: 8 VAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAA---KSVGTPDQIQFFQHDSS 64
Query: 67 DYDAIAAAVTGCTGVF-----------HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA 115
D D F + + + +LL + G
Sbjct: 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLG 124
Query: 116 KALGVKR-----VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAE 170
+ ++ SSI P A Y +SK+ A
Sbjct: 125 IQRMKNKGLGASIINMSSIEGFVGDPSLGA-------------YNASKGAVRIMSKSAAL 171
Query: 171 KAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLR 210
A K+ + V V+PG + P++ A M R
Sbjct: 172 DCAL---KDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQR 208
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 35/197 (17%), Positives = 53/197 (26%), Gaps = 28/197 (14%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
VTGG+ +G L R Y V E + + R
Sbjct: 3 SALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQE 62
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK----- 121
+ A G+ + ++L + GT NVL A +
Sbjct: 63 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDA 122
Query: 122 -----RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEF 176
+V T+S+++ A Y L+ A E
Sbjct: 123 EGQRGVIVNTASVAAFEGQIGQAA-------------YAASKGGVVALTLPA----AREL 165
Query: 177 AKEKGLDVVVVNPGTVM 193
A G+ VV V PG
Sbjct: 166 AG-WGIRVVTVAPGLFD 181
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 36/207 (17%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTG G IG L E + N + ++ R + D+
Sbjct: 7 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAE--ASVREKGVEARSYVCDVT 64
Query: 67 DYDAIAAAVT----------------GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVN 110
+A+ V G G F D + A
Sbjct: 65 SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKA 124
Query: 111 VLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAE 170
V R+V T+S++ + P A Y L++T
Sbjct: 125 VSRQMITQNYGRIVNTASMAGVKGPPNMAA-------------YGTSKGAIIALTETA-- 169
Query: 171 KAAWEFAKEKGLDVVVVNPGTVMGPVI 197
A + A + V ++PG + +
Sbjct: 170 --ALDLAP-YNIRVNAISPGYMGPGFM 193
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 43.9 bits (103), Expect = 1e-05
Identities = 25/194 (12%), Positives = 49/194 (25%), Gaps = 10/194 (5%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETA-HLKALEGADTRLRLFQIDL 65
V +TG S IG + + V T +N ET + ++ D+
Sbjct: 6 SVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADV 65
Query: 66 LDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
+ + + I+ V + L + V+
Sbjct: 66 TEASGQDDIINTT--LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIE 123
Query: 126 TSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----TLAEKAAWEFAKEKG 181
++ + +Y +K A + + G
Sbjct: 124 M--TQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQ-HG 180
Query: 182 LDVVVVNPGTVMGP 195
+ V V+PG V
Sbjct: 181 VRVNSVSPGAVATG 194
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 43.8 bits (101), Expect = 1e-05
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V + G +G IG+ L LL H V L D A + L + D+
Sbjct: 3 VLILGVNGFIGNHLTERLLRED---HYEVYGL-DIGSDAISRFLN--HPHFHFVEGDISI 56
Query: 68 YDAI 71
+
Sbjct: 57 HSEW 60
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 42.7 bits (100), Expect = 3e-05
Identities = 30/205 (14%), Positives = 57/205 (27%), Gaps = 39/205 (19%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTGG+ +G +V LLL V + D E A + R + D+
Sbjct: 8 VALVTGGASGVGLEVVKLLLGEGAKVAFS-----DINEAAGQQLAAELGERSMFVRHDVS 62
Query: 67 DYDAIAAAV-------------TGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLT 113
+ G+ + ++LL +
Sbjct: 63 SEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGR--LEDFSRLLKINTESVFIGCQ 120
Query: 114 AAKALGVK---RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAE 170
A + ++ +S+SS P ++ Y L++ A
Sbjct: 121 QGIAAMKETGGSIINMASVSSWLPIEQYAG-------------YSASKAAVSALTRAAAL 167
Query: 171 KAAWEFAKEKGLDVVVVNPGTVMGP 195
+ + V ++P + P
Sbjct: 168 SCRK---QGYAIRVNSIHPDGIYTP 189
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 42.6 bits (100), Expect = 3e-05
Identities = 25/216 (11%), Positives = 56/216 (25%), Gaps = 41/216 (18%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+ +TGG+ IG + + + E E A+ R+ + D+
Sbjct: 7 LAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAE----AAIRNLGRRVLTVKCDVS 62
Query: 67 DYDAIAAAVTG-------------CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLT 113
+ A G++ L + + + V +
Sbjct: 63 QPGDVEAFGKQVISTFGRCDILVNNAGIYPLIP--FDELTFEQWKKTFEINVDSGFLMAK 120
Query: 114 AAKALGVKR----VVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLA 169
A + ++ +S + + Y ++ LA
Sbjct: 121 AFVPGMKRNGWGRIINLTSTTYWLKIEAYTH-------------YISTKAANIGFTRALA 167
Query: 170 EKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASM 205
+ K G+ V + P V + ++M
Sbjct: 168 S----DLGK-DGITVNAIAPSLVRTATTEASALSAM 198
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 42.0 bits (98), Expect = 4e-05
Identities = 32/193 (16%), Positives = 49/193 (25%), Gaps = 11/193 (5%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTG + IG + L + V + R T K L A D+
Sbjct: 4 VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTL--KELREAGVEADGRTCDVR 61
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
I A V + + V + + + + V
Sbjct: 62 SVPEIEALVAAVVERY----GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRV 117
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----TLAEKAAWEFAKEKGL 182
+ T + + Y SK + E A+ G+
Sbjct: 118 TKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELAR-TGI 176
Query: 183 DVVVVNPGTVMGP 195
V V PG V P
Sbjct: 177 TVNAVCPGFVETP 189
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 42.3 bits (99), Expect = 4e-05
Identities = 30/207 (14%), Positives = 58/207 (28%), Gaps = 40/207 (19%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTGG+ IG +V +H +N + E + ++ D
Sbjct: 10 TVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECL--SKWQKKGFQVTGSVCDAS 67
Query: 67 DYDAIAAAVTG--------------CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL 112
+ G +D + + ++ ++ ++
Sbjct: 68 LRPEREKLMQTVSSMFGGKLDILINNLGAIRSKP--TLDYTAEDFSFHISTNLESAYHLS 125
Query: 113 TAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTL 168
A KA G ++ SSI+ + + Y L++ L
Sbjct: 126 QLAHPLLKASGCGNIIFMSSIAGVVSASVGSI-------------YSATKGALNQLARNL 172
Query: 169 AEKAAWEFAKEKGLDVVVVNPGTVMGP 195
A + A G+ V P + P
Sbjct: 173 ACEWAS-----DGIRANAVAPAVIATP 194
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 4e-05
Identities = 44/239 (18%), Positives = 74/239 (30%), Gaps = 43/239 (17%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL 65
V VTGG+ IG +V L V T ++++ + + L+ R Q+D+
Sbjct: 5 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAV--QQLQAEGLSPRFHQLDI 62
Query: 66 LDYDAIAAAVT-------GCTGVFHLASPCIVDKVEDPQ----NQLLNPAVKGTVNVLTA 114
D +I A G + + A P + GT +V T
Sbjct: 63 DDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTE 122
Query: 115 AKALGVK--RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW----------- 161
L RVV SSI S+ + + T E +
Sbjct: 123 LLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVH 182
Query: 162 ---------YPLSK----TLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNAS 204
Y ++K L+ A + +++ + + PG V + P S
Sbjct: 183 QKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATKS 241
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 41.5 bits (97), Expect = 6e-05
Identities = 31/204 (15%), Positives = 56/204 (27%), Gaps = 38/204 (18%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V +TGG+ +G+ + V ++ DE A + L R +D+
Sbjct: 7 TVIITGGARGLGAEAARQAVAAGARVVLA--DVLDEEGAATARELGD---AARYQHLDVT 61
Query: 67 DYDAIAAAVTGCTGVF-----------HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA 115
+ V F + + + +++ + G +
Sbjct: 62 IEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTV 121
Query: 116 ----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEK 171
K G +V SS + + + Y LSK
Sbjct: 122 IPAMKDAGGGSIVNISSAAGLMGLALTSS-------------YGASKWGVRGLSKLA--- 165
Query: 172 AAWEFAKEKGLDVVVVNPGTVMGP 195
A E + V V+PG P
Sbjct: 166 -AVELGT-DRIRVNSVHPGMTYTP 187
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (95), Expect = 1e-04
Identities = 32/196 (16%), Positives = 60/196 (30%), Gaps = 15/196 (7%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETA---HLKALEGADTRLRLFQI 63
V VTGG+ IG +V LLE V + L + A R+ Q
Sbjct: 14 VAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQC 73
Query: 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRV 123
++ + + + V + + V + Q L+PA + A +
Sbjct: 74 NIRNEEEVNNLVKST--LDTFGKINFL--VNNGGGQFLSPAEHISSKGWHAVLETNLTGT 129
Query: 124 VVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----TLAEKAAWEFAKE 179
+ + V + + + ++ L + A E+A
Sbjct: 130 FYMCKAVYSSWMKEHGGSIV---NIIVPTKAGFPLAVHSGAARAGVYNLTKSLALEWAC- 185
Query: 180 KGLDVVVVNPGTVMGP 195
G+ + V PG +
Sbjct: 186 SGIRINCVAPGVIYSQ 201
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 9/200 (4%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTG + IG + + L + + + E E ++ DL
Sbjct: 6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLS 65
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
+A+ V + + + + + +L + V
Sbjct: 66 KGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILA------LNLSAVF 119
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLD 183
++ P K N+ Y +K A E +G+
Sbjct: 120 HGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGIT 179
Query: 184 VVVVNPGTVMGPVIPPTLNA 203
+ PG V P++ ++A
Sbjct: 180 ANAICPGWVRTPLVEKQISA 199
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTG IG + L R V N ++ E + A++ + + ++
Sbjct: 20 VALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV-VAAIKKNGSDAACVKANVG 78
Query: 67 DYDAIAAAV 75
+ I
Sbjct: 79 VVEDIVRMF 87
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 3/126 (2%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V G+G +G +LL V + L + A ++ + +
Sbjct: 25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD---SVNKRFKVNVTAAETA 81
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
D + A AV G VF + + + + + N G+
Sbjct: 82 DDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKG 141
Query: 127 SSISSI 132
Sbjct: 142 KEYGGK 147
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (92), Expect = 2e-04
Identities = 19/199 (9%), Positives = 44/199 (22%), Gaps = 26/199 (13%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+TG IG + +V + N ++ + + D+
Sbjct: 13 CAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVV--DEIQQLGGQAFACRCDIT 70
Query: 67 DYDAIAAAVTGCTGVFH----------LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAK 116
++A P D + V ++
Sbjct: 71 SEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQL-- 128
Query: 117 ALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEF 176
V + + Y L + + A++
Sbjct: 129 -------VAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNM----AFDL 177
Query: 177 AKEKGLDVVVVNPGTVMGP 195
+ K + V + PG ++
Sbjct: 178 GE-KNIRVNGIAPGAILTD 195
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 39.2 bits (89), Expect = 4e-04
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 20/71 (28%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
+ + G +G +G L L + D + F D +
Sbjct: 3 ILLFGKTGQVGWELQRSLAPVGNLI--------------------ALDVHSKEFCGDFSN 42
Query: 68 YDAIAAAVTGC 78
+A V
Sbjct: 43 PKGVAETVRKL 53
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 38.9 bits (90), Expect = 4e-04
Identities = 36/193 (18%), Positives = 58/193 (30%), Gaps = 19/193 (9%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
+ VTG + IG + L ++ A D E +A+ + D+
Sbjct: 7 TILVTGAASGIGRAALDLFAREGASLVAV-----DREERLLAEAVAALEAEAIAVVADVS 61
Query: 67 DYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126
D A+ A F ++ + A L V RV +T
Sbjct: 62 DPKAVEAVFAEALEEF--------GRLHGVAHF-AGVAHSALSWNLPLEAWEKVLRVNLT 112
Query: 127 SSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----TLAEKAAWEFAKEKGL 182
S + + + + Y K LA A E A+ KG+
Sbjct: 113 GSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGLAHYAAGKLGVVGLARTLALELAR-KGV 171
Query: 183 DVVVVNPGTVMGP 195
V V+ PG + P
Sbjct: 172 RVNVLLPGLIQTP 184
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 39.0 bits (90), Expect = 4e-04
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTG IG + L++ + V N + + A + A ++D+
Sbjct: 3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVA--SEINQAGGHAVAVKVDVS 60
Query: 67 DYDAIAAA 74
D D + AA
Sbjct: 61 DRDQVFAA 68
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 38.9 bits (90), Expect = 4e-04
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
VTGGS IG +V L V+ +N + E + + DLL
Sbjct: 8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECL--EIWREKGLNVEGSVCDLL 65
Query: 67 DYDAIAAAVTGCTGVFH 83
+ VF
Sbjct: 66 SRTERDKLMQTVAHVFD 82
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 39.0 bits (90), Expect = 4e-04
Identities = 11/68 (16%), Positives = 19/68 (27%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
VV +TGG +G L + + + D + D+
Sbjct: 6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS 65
Query: 67 DYDAIAAA 74
D + A
Sbjct: 66 DEAQVEAY 73
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 39.0 bits (90), Expect = 5e-04
Identities = 31/208 (14%), Positives = 56/208 (26%), Gaps = 39/208 (18%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V TG IG + L R +V + S E + L+ + Q D+
Sbjct: 8 VALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEV-VAELKKLGAQGVAIQADIS 66
Query: 67 DYDAIAAAVT-------------GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLT 113
+ A +G+ ++ ++ +++ N +G V
Sbjct: 67 KPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCD--ELEVTQELFDKVFNLNTRGQFFVAQ 124
Query: 114 AAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----TLA 169
+ + + S P N Y SK
Sbjct: 125 QGLKHCRRGGRIILTSSIAAVMTGIP------------------NHALYAGSKAAVEGFC 166
Query: 170 EKAAWEFAKEKGLDVVVVNPGTVMGPVI 197
A + KG+ V + PG V +
Sbjct: 167 RAFAVDCGA-KGVTVNCIAPGGVKTDMF 193
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 38.6 bits (89), Expect = 5e-04
Identities = 30/200 (15%), Positives = 65/200 (32%), Gaps = 11/200 (5%)
Query: 1 MSKEAE--VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRL 58
M K+ E VV +TG S +G + + V ++ DE + L+ ++
Sbjct: 1 MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSV-LEEIKKVGGEA 59
Query: 59 RLFQIDLLDYDAIA---AAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA 115
+ D+ + + G + + +++ ++
Sbjct: 60 IAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTG 119
Query: 116 KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWE 175
LG + + + I + + + Y +++TL A E
Sbjct: 120 AFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETL----ALE 175
Query: 176 FAKEKGLDVVVVNPGTVMGP 195
+A KG+ V + PG + P
Sbjct: 176 YAP-KGIRVNNIGPGAINTP 194
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 37.8 bits (86), Expect = 7e-04
Identities = 23/253 (9%), Positives = 51/253 (20%), Gaps = 49/253 (19%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V + G +G G L+ +L E L
Sbjct: 5 VLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPR------------LDNPVGPL 52
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
+ + F I + + +
Sbjct: 53 AELLPQLDGSIDTAFCCLGTTIKEAGSEEAFR---------------------------- 84
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
++ P + + + + ++ + +
Sbjct: 85 AVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIA 144
Query: 188 NPGTVMGPVIPPTLN-ASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSAC 246
P + GP L + R+L G + D+A A +
Sbjct: 145 RPSLLFGPREEFRLAEILAAPIARILPG--------KYHGIEACDLARALWRLALEEGKG 196
Query: 247 GRHLCVEAISHYG 259
R + + + G
Sbjct: 197 VRFVESDELRKLG 209
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 38.2 bits (88), Expect = 8e-04
Identities = 30/201 (14%), Positives = 63/201 (31%), Gaps = 27/201 (13%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETA-HLKALEGADTRLRLFQIDL 65
V +TGG +G + +LL + + + TA + + G ++ Q D+
Sbjct: 27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN--KVHAIQCDV 84
Query: 66 LDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125
D D + V+ V N ++N A ++ K +
Sbjct: 85 RDPDMVQNTVSELIKVAG------------HPNIVINNAAGNFISPTERLSPNAWKTITD 132
Query: 126 TSSISSITPSPKWPADKVKDEDCWTD-------EEYCRQNEIWYPLSK----TLAEKAAW 174
+ + + +K + E + +K +++ A
Sbjct: 133 IVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAA 192
Query: 175 EFAKEKGLDVVVVNPGTVMGP 195
E+ K G+ V+ PG +
Sbjct: 193 EWGK-YGMRFNVIQPGPIKTK 212
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.9 bits (87), Expect = 0.001
Identities = 26/198 (13%), Positives = 55/198 (27%), Gaps = 11/198 (5%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERR---YTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
V +TG S G L L + + ++ S R+ + D ++ L
Sbjct: 8 VCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAA 67
Query: 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRV 123
DL + ++ + + + + KG +NV A+ +
Sbjct: 68 DLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVS--KGFLNVNDLAEVNNYWAL 125
Query: 124 VVTSSISSITP-SPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAK---- 178
+TS + + + + C + A +
Sbjct: 126 NLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAA 185
Query: 179 -EKGLDVVVVNPGTVMGP 195
E + V+ PG +
Sbjct: 186 EEPSVRVLSYAPGPLDND 203
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.5 bits (86), Expect = 0.001
Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 38/205 (18%)
Query: 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQI 63
EA V V GG G +GS V R + V + ++E + + + + T Q
Sbjct: 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTE----QA 56
Query: 64 DLLDYDAIAAAVTG-CTGVFHLASPCIVDKVEDPQ-----NQLLNPAVKGTVNVLTAAKA 117
D + + + +A + + + ++ + A
Sbjct: 57 DQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATK 116
Query: 118 L--GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----TLAEK 171
+ + + +++ +P Y ++K L +
Sbjct: 117 HLKEGGLLTLAGAKAALDGTPGMI---------------------GYGMAKGAVHQLCQS 155
Query: 172 AAWEFA-KEKGLDVVVVNPGTVMGP 195
A + + G + V P T+ P
Sbjct: 156 LAGKNSGMPSGAAAIAVLPVTLDTP 180
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 36.9 bits (85), Expect = 0.002
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTGGS +G + L E +V +NL + E A K E F+ D+
Sbjct: 7 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQ-KLTEKYGVETMAFRCDVS 65
Query: 67 DYDAIAAA 74
+Y+ +
Sbjct: 66 NYEEVKKL 73
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.002
Identities = 29/244 (11%), Positives = 60/244 (24%), Gaps = 41/244 (16%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD 67
V + G SG G L+ +LE+ T+ + +++D
Sbjct: 17 VFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAY---------KNVNQEVVD 67
Query: 68 YDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127
++ + + G + + + + AKA G K + S
Sbjct: 68 FEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLS 127
Query: 128 SISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVV 187
S + S + + +E + ++
Sbjct: 128 SKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVF-------------------------- 161
Query: 188 NPGTVMGPVIPPTLNASMLM-LLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPSAC 246
PG ++ ++ L + SV V A + P
Sbjct: 162 RPGVLLCDRQESRPGEWLVRKFFGSLPDSWASG-----HSVPVVTVVRAMLNNVVRPRDK 216
Query: 247 GRHL 250
L
Sbjct: 217 QMEL 220
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 36.7 bits (84), Expect = 0.003
Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 29/206 (14%)
Query: 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRL 60
M + + +TG + IG + V NL R TA
Sbjct: 1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATA-----AEIGPAACA 55
Query: 61 FQIDLLDYDAIAAAVT-----------GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTV 109
+D+ D +I V IV+ + ++L V GT+
Sbjct: 56 IALDVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTL 115
Query: 110 NVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLA 169
++ A + I+ + + + YC L+++
Sbjct: 116 FMMQAVARAMIAGGRGGKIINMASQAGRRG--------EALVGVYCATKAAVISLTQSA- 166
Query: 170 EKAAWEFAKEKGLDVVVVNPGTVMGP 195
+ G++V + PG V G
Sbjct: 167 ---GLNLIR-HGINVNAIAPGVVDGE 188
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.2 bits (83), Expect = 0.003
Identities = 30/206 (14%), Positives = 54/206 (26%), Gaps = 43/206 (20%)
Query: 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL 66
V VTGG+ IG + L + V T R + K L G ++D+
Sbjct: 9 SVLVTGGNRGIGLAIAQRLAADGHKVAVT------HRGSGAPKGLFG-------VEVDVT 55
Query: 67 DYDAIAAAVT------------------GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGT 108
D DA+ A T + +KV + +
Sbjct: 56 DSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRA 115
Query: 109 VNVLTAAKALGVKRVVVTSSISSITPSPKWPADKV---------KDEDCWTDEEYCRQNE 159
+ R++ S+S + + + N
Sbjct: 116 SRS---MQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANVTANV 172
Query: 160 IWYPLSKTLAEKAAWEFAKEKGLDVV 185
+ T +A E ++ L +
Sbjct: 173 VAPGYIDTDMTRALDERIQQGALQFI 198
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.0 bits (82), Expect = 0.003
Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 30/197 (15%)
Query: 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADT----RLRLFQI 63
V V GG G +GS ++ + YTV + +D+ ++ L T +
Sbjct: 5 VIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTA 64
Query: 64 DLLDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRV 123
L + G ++ + L +
Sbjct: 65 SSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLL 124
Query: 124 VVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSK----TLAEKAAWEFAK- 178
+T + +++ P+P Y ++K L A + +
Sbjct: 125 QLTGAAAAMGPTPSMI---------------------GYGMAKAAVHHLTSSLAAKDSGL 163
Query: 179 EKGLDVVVVNPGTVMGP 195
V+ + P T+ P
Sbjct: 164 PDNSAVLTIMPVTLDTP 180
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.97 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.97 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.95 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.95 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.94 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.94 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.94 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.94 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.94 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.94 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.94 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.94 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.94 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.94 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.94 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.94 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.94 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.94 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.94 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.93 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.93 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.93 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.93 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.93 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.93 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.93 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.93 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.93 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.93 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.93 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.93 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.92 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.92 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.92 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.92 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.92 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.91 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.91 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.91 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.91 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.91 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.91 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.91 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.91 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.91 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.91 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.91 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.9 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.9 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.89 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.89 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.89 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.89 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.89 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.88 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.88 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.88 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.87 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.86 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.86 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.84 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.84 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.83 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.82 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.82 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.8 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.79 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.79 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.76 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.74 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.74 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.69 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.67 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.5 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.63 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.53 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.49 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.42 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.37 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.3 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.26 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.23 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.22 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.18 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 98.13 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 98.08 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 98.05 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.03 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.0 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.0 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.0 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.99 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.98 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.92 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.92 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.84 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.83 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.82 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.81 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.81 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.79 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.77 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.76 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.75 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.75 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.74 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.73 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.71 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.7 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.65 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.64 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.62 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.58 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.53 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.52 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.52 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.52 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.5 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.47 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.42 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.39 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 97.35 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.33 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.25 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.24 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.2 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.18 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.15 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.14 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.13 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.11 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 97.11 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.02 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.98 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.96 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.96 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.94 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.94 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.86 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.81 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.8 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.8 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.8 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.79 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.79 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.77 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.76 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.75 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.72 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.71 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.7 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.68 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.68 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.65 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.64 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.63 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.57 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.52 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.52 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.5 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.5 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.46 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.46 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.46 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.39 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.38 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.34 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.32 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.32 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.32 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.31 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.28 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 96.27 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.22 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.21 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.21 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 96.19 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.17 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 96.17 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.17 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.15 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.14 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.13 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.07 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.06 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.04 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.01 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.98 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.97 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.97 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.97 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 95.93 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.83 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.83 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.82 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.82 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.73 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 95.64 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.6 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.58 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.57 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.56 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.55 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 95.49 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.47 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.43 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.39 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.37 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.33 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.3 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 95.19 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.1 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.04 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 94.96 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.96 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.92 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.81 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 94.76 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 94.71 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.69 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.68 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 94.67 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.64 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.63 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.63 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 94.58 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.39 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 94.37 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 94.15 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 94.0 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.96 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 93.95 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.95 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.92 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 93.85 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 93.61 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 93.46 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.45 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 93.41 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 93.26 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 93.2 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.17 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 93.03 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.91 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 92.77 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 92.6 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 92.56 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 92.43 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 92.34 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 92.32 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 92.12 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 91.94 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 91.88 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 91.72 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.57 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 91.27 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 91.23 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 90.71 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 90.28 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 89.98 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 89.82 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 89.68 | |
| d1q7ea_ | 417 | Hypothetical protein YfdW {Escherichia coli [TaxId | 89.49 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 89.27 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 89.17 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 88.76 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.6 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 88.52 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.48 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 88.4 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 88.39 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 88.28 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 88.27 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 87.89 | |
| d1x74a1 | 359 | 2-methylacyl-CoA racemase Mcr {Mycobacterium tuber | 87.59 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 87.45 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 87.32 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 87.22 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 87.11 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 86.78 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 86.63 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 86.58 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 86.15 | |
| d2vjma1 | 427 | Formyl-CoA transferase {Oxalobacter formigenes [Ta | 85.93 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 85.36 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 85.26 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 85.09 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 84.78 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 84.64 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 84.3 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 84.17 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 84.14 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 83.93 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 83.89 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 83.82 | |
| d1p3y1_ | 183 | MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} | 83.71 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 83.3 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 83.29 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 83.29 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 83.04 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 82.99 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 82.93 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 82.73 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 82.58 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 82.06 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 81.63 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 81.61 | |
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 80.74 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.42 | |
| d1jyea_ | 271 | Lac-repressor (lacR) core (C-terminal domain) {Esc | 80.28 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 80.22 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 80.22 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 80.02 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-48 Score=342.21 Aligned_cols=300 Identities=17% Similarity=0.151 Sum_probs=227.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcH--HHHHHHhh-ccCCCCCeEEEEccCCCHhHHHHHhc--CCCE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE--RETAHLKA-LEGADTRLRLFQIDLLDYDAIAAAVT--GCTG 80 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 80 (323)
|+|||||||||||++|+++|+++|++|++++|..+.. .....+.. ......+++++.+|++|.++++++++ ++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 7899999999999999999999999999999865321 11111111 11224589999999999999999998 4599
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc---CEEEEecccccccCCCCCCCCccccCCCCCChhhhcc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV---KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQ 157 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 157 (323)
|||+|+...++.+.+++...+++|+.||.+|+++|++.++ ++|||+||. .+|+... ..+++|+++..|.
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~-~vYG~~~---~~~~~E~~~~~P~---- 153 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTS-ELYGLVQ---EIPQKETTPFYPR---- 153 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEG-GGGTTCC---SSSBCTTSCCCCC----
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEch-hhhCCCC---CCCcCCCCCCCCC----
Confidence 9999999888778888899999999999999999988754 479999998 5555443 6689999887665
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCCCCC--c--cCcCCCcccHHH
Q 020608 158 NEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGCTDT--Y--ENFFMGSVHFKD 231 (323)
Q Consensus 158 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~~--~--~~~~~~~i~v~D 231 (323)
++|+.||.++|.+++.++++++++++++||+++|||....... .....+.....+.... . +...++|+|++|
T Consensus 154 --~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D 231 (357)
T d1db3a_ 154 --SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKD 231 (357)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHH
T ss_pred --ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeech
Confidence 7899999999999999998899999999999999997543322 2223444555565433 3 345668999999
Q ss_pred HHHHHHHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCCC--------------------CCCCCCC----------
Q 020608 232 VALAHILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEYD--------------------IPRLPKD---------- 280 (323)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~--------------------~~~~~~~---------- 280 (323)
+|++++.+++.. .++.||+ +++.+|++|+++.+.+.++... .+.....
T Consensus 232 ~~~a~~~~~~~~-~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (357)
T d1db3a_ 232 YVKMQWMMLQQE-QPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRY 310 (357)
T ss_dssp HHHHHHHTTSSS-SCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGG
T ss_pred HHHHHHHHHhCC-CCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeecccc
Confidence 999999999865 4567987 5788999999999999885210 0000000
Q ss_pred -CCCCCccccccchhH-hhhCCcc-cCHHHHHHHHHHHH
Q 020608 281 -TQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVESL 316 (323)
Q Consensus 281 -~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~ 316 (323)
++.......+|++|+ ++|||+| ++|+++|++++++.
T Consensus 311 ~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~ 349 (357)
T d1db3a_ 311 FRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVAND 349 (357)
T ss_dssp CCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHH
T ss_pred CCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 111223356799999 8899999 99999999998653
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1.2e-49 Score=346.74 Aligned_cols=302 Identities=23% Similarity=0.219 Sum_probs=242.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEE------EEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTV------HATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
|||||||||||||++|+++|+++|++| +++++....... .....+ ....+++++.+|+.+..........+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~-~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~d 78 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-ANLAPV-DADPRLRFVHGDIRDAGLLARELRGVD 78 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-GGGGGG-TTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH-hHhhhh-hcCCCeEEEEeccccchhhhccccccc
Confidence 589999999999999999999999754 444432211111 111122 224589999999999999999999999
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCC
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNE 159 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 159 (323)
.|+|+|+.........++...+++|+.++.+++++|++.++++|||+||+++++... ..+++|+++..|.
T Consensus 79 ~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~----~~~~~E~~~~~p~------ 148 (322)
T d1r6da_ 79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSID----SGSWTESSPLEPN------ 148 (322)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCS----SSCBCTTSCCCCC------
T ss_pred eEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCC----CCCCCCCCCCCCC------
Confidence 999999886554555667788999999999999999999999999999995554433 6678999888775
Q ss_pred CchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHHHHHHHH
Q 020608 160 IWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKDVALAH 236 (323)
Q Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D~a~~~ 236 (323)
++|+.+|.++|.+++.++++++++++++||++||||++... .....++.++..|++.. + |.+.++|+|++|+|+++
T Consensus 149 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~-~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai 227 (322)
T d1r6da_ 149 SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGI 227 (322)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcC-cHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHH
Confidence 78999999999999999999999999999999999986543 34556778888888765 3 44566799999999999
Q ss_pred HHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHH
Q 020608 237 ILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEY-DIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDS 312 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~ 312 (323)
..+++++..++.||++ ++.+++.|+++.+.+.++.. ...............+.+|++|+ +.|||+| ++++++|+++
T Consensus 228 ~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~eegI~~~ 307 (322)
T d1r6da_ 228 ALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLART 307 (322)
T ss_dssp HHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHH
T ss_pred HHHHhCCCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHHHHH
Confidence 9999988777789984 78899999999999999743 11112223334455678999999 7899999 9999999999
Q ss_pred HHHHHHcC
Q 020608 313 VESLKAKG 320 (323)
Q Consensus 313 ~~~~~~~~ 320 (323)
++|+++|.
T Consensus 308 i~w~~~n~ 315 (322)
T d1r6da_ 308 VRWYRENR 315 (322)
T ss_dssp HHHHHHCH
T ss_pred HHHHHHhH
Confidence 99999863
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=3.8e-49 Score=348.44 Aligned_cols=305 Identities=20% Similarity=0.180 Sum_probs=231.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
|||||||||||||++|+++|+++|++|++..++.+..........+.. ..+++++.+|++|.+.+..+++ ++|+|||
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih 79 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISE-SNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhh-cCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence 589999999999999999999999986555443322222222222221 3589999999999999999887 5899999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCC---------cCEEEEecccccccCCCCCCC-------CccccCC
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALG---------VKRVVVTSSISSITPSPKWPA-------DKVKDED 147 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~v~~SS~~~~~~~~~~~~-------~~~~~e~ 147 (323)
+||....+.+..++..++++|+.|+.+++++|++.+ +++||++||..+ |+...... .....|+
T Consensus 80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~v-yg~~~~~~~~~~~~~~~~~~e~ 158 (361)
T d1kewa_ 80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEV-YGDLPHPDEVENSVTLPLFTET 158 (361)
T ss_dssp CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGG-GCCCCCGGGSCTTSCCCCBCTT
T ss_pred CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEecccee-eCCCccCCccccccCCCCcccC
Confidence 999866555556778899999999999999997653 459999999954 44332100 1112233
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-cc--CcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YE--NFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~--~~~~ 224 (323)
++.. |.+.||.+|+++|.++..++++++++++++||++||||+.... .....++.++..|++.. ++ .+.+
T Consensus 159 ~~~~------p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~-~~i~~~i~~~~~g~~~~v~g~g~~~r 231 (361)
T d1kewa_ 159 TAYA------PSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQIR 231 (361)
T ss_dssp SCCC------CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHHHHHHHHHHHTCCEEEETTSCCEE
T ss_pred CCCC------CCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcC-cHHHHHHHHHHcCCCcEEeCCCCeEE
Confidence 3333 3378999999999999999999999999999999999986543 34556778888888764 33 4567
Q ss_pred CcccHHHHHHHHHHhhcCCCCCccEEEE-cCccCHHHHHHHHHHHCCCCC--------CCCCCCCCCCCCccccccchhH
Q 020608 225 GSVHFKDVALAHILVYENPSACGRHLCV-EAISHYGDFVAKVAELYPEYD--------IPRLPKDTQPGLLRTKDGAKKL 295 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 295 (323)
+|+|++|+|++++.++++...++.||++ +.++++.|+++.+.+.++... ........+.....+.+|++|+
T Consensus 232 ~~i~v~D~a~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 311 (361)
T d1kewa_ 232 DWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKI 311 (361)
T ss_dssp EEEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHH
T ss_pred eCEEHHHHHHHHHHHHhcCCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHHHH
Confidence 7999999999999999988777789985 778999999999987663210 0111112223445678899999
Q ss_pred -hhhCCcc-cCHHHHHHHHHHHHHHc
Q 020608 296 -MDLGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 296 -~~lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
++|||+| ++++++|+++++||+.+
T Consensus 312 ~~~lgw~P~~~l~e~i~~ti~w~~~n 337 (361)
T d1kewa_ 312 SRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp HHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHh
Confidence 7899999 99999999999999876
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.7e-49 Score=339.27 Aligned_cols=300 Identities=19% Similarity=0.256 Sum_probs=228.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
.|||||||||||||++|+++|+++|++|++++|..+.... ..... .....+.+...|+.+ .++.++|+|||+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~--~~~~~-~~~~~~d~~~~~~~~-----~~~~~~d~Vihl 72 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKR--NVEHW-IGHENFELINHDVVE-----PLYIEVDQIYHL 72 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG--GTGGG-TTCTTEEEEECCTTS-----CCCCCCSEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHH--HHHHh-cCCCceEEEehHHHH-----HHHcCCCEEEEC
Confidence 3799999999999999999999999999999874432111 11111 112345666666543 345689999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHH
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPL 164 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~ 164 (323)
|+....+.+..++...+++|+.++.+++++|++.++ ++||+||+++ |+... ..+++|+..... .+..|.++|+.
T Consensus 73 Aa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~v-y~~~~---~~~~~e~~~~~~-~~~~p~~~Y~~ 146 (312)
T d2b69a1 73 ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEV-YGDPE---VHPQSEDYWGHV-NPIGPRACYDE 146 (312)
T ss_dssp CSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGG-GBSCS---SSSBCTTCCCBC-CSSSTTHHHHH
T ss_pred cccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChhe-ecCCC---CCCCCccccCCC-CCCCCccHHHH
Confidence 998766555667788999999999999999999885 8999999855 44433 445666543221 12233477999
Q ss_pred HHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC-chhHHHHHHHHcCCCCC-cc--CcCCCcccHHHHHHHHHHhh
Q 020608 165 SKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL-NASMLMLLRLLQGCTDT-YE--NFFMGSVHFKDVALAHILVY 240 (323)
Q Consensus 165 sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~-~~~~~~~~~~~~g~~~~-~~--~~~~~~i~v~D~a~~~~~~~ 240 (323)
+|+++|.+++.+++++|++++++||++||||+..... .....++.++..|++.. .+ .+.++|+|++|+|++++.++
T Consensus 147 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~ 226 (312)
T d2b69a1 147 GKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALM 226 (312)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876543 34556778888888765 34 45568999999999999998
Q ss_pred cCCCCCccEEE-EcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHHHHHHH
Q 020608 241 ENPSACGRHLC-VEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDSVESLK 317 (323)
Q Consensus 241 ~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~~ 317 (323)
+.. ..+.||+ ++..+++.++++.+++.++......+..........+..|++|+ +.|||+| ++++++|+++++|++
T Consensus 227 ~~~-~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~ 305 (312)
T d2b69a1 227 NSN-VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFR 305 (312)
T ss_dssp TSS-CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred hhc-cCCceEecCCcccchhhHHHHHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence 765 4567887 57889999999999999965322222233333445678899999 8899999 999999999999998
Q ss_pred Hc
Q 020608 318 AK 319 (323)
Q Consensus 318 ~~ 319 (323)
++
T Consensus 306 ~~ 307 (312)
T d2b69a1 306 KE 307 (312)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.6e-46 Score=329.50 Aligned_cols=306 Identities=16% Similarity=0.089 Sum_probs=243.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC-cHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-DERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
++|+|||||||||||++|+++|+++|++|++++|... ..........+.. ...+++++.+|+.|...........+.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~ 94 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY 94 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccccc
Confidence 5689999999999999999999999999999987443 2222222222211 124789999999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|+|+++......+.+++...+++|+.|+.+++++|++.++++|||+||.++ |+... ..+++|+++..|. +
T Consensus 95 v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~v-yg~~~---~~~~~E~~~~~p~------~ 164 (341)
T d1sb8a_ 95 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSST-YGDHP---GLPKVEDTIGKPL------S 164 (341)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGG-GTTCC---CSSBCTTCCCCCC------S
T ss_pred cccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEccccee-eCCCC---CCCccCCCCCCCC------C
Confidence 999998876655667778899999999999999999999999999999955 54443 6679999988775 7
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCC-cc--CcCCCcccHHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDT-YE--NFFMGSVHFKDVAL 234 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~-~~--~~~~~~i~v~D~a~ 234 (323)
.|+.+|.++|.+++.+++.++++++++||+++|||+..... ......+..+..|++.. .+ .+.++|+|++|+|.
T Consensus 165 ~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~ 244 (341)
T d1sb8a_ 165 PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQ 244 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccch
Confidence 89999999999999999888999999999999999765432 23345667788888765 44 45678999999999
Q ss_pred HHHHhhcCCC--CCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCC-----CCCCCCCccccccchhH-hhhCCcc-cC
Q 020608 235 AHILVYENPS--ACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLP-----KDTQPGLLRTKDGAKKL-MDLGLQF-IP 304 (323)
Q Consensus 235 ~~~~~~~~~~--~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~lG~~~-~~ 304 (323)
++..++.... .++.||++ ++..|+.|+++.+.+.++...++... ............|++|+ +.|||+| ++
T Consensus 245 a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~p~~s 324 (341)
T d1sb8a_ 245 ANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYD 324 (341)
T ss_dssp HHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCCCC
T ss_pred hhhhhhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCCcCCC
Confidence 9999887643 24458875 67899999999999888543222111 11122334567899999 7799999 99
Q ss_pred HHHHHHHHHHHHHHc
Q 020608 305 MDQIIKDSVESLKAK 319 (323)
Q Consensus 305 ~~~~l~~~~~~~~~~ 319 (323)
++++|+++++||+..
T Consensus 325 l~~gi~~ti~wy~~~ 339 (341)
T d1sb8a_ 325 VSAGVALAMPWYIMF 339 (341)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999873
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=7.5e-47 Score=332.20 Aligned_cols=306 Identities=17% Similarity=0.175 Sum_probs=235.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc-HHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD-ERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+||+|||||||||||++|+++|+++|++|.+++++... .........+ ...+++++.+|++|.+.+..++.+++.|+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~--~~~~i~~~~~Di~d~~~~~~~~~~~~~v~ 78 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI--LGDRVELVVGDIADAELVDKLAAKADAIV 78 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG--CSSSEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh--hcCCeEEEEccCCCHHHHHHHHhhhhhhh
Confidence 58999999999999999999999999876666553211 1111111111 13589999999999999999999999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCC--------CCCCccccCCCCCChhh
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPK--------WPADKVKDEDCWTDEEY 154 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~--------~~~~~~~~e~~~~~~~~ 154 (323)
|+|+......+..++...+++|+.|+.+++++++..+ .++|++||.++++..+. ......++|+++..|.
T Consensus 79 ~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~-~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~- 156 (346)
T d1oc2a_ 79 HYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD-IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPS- 156 (346)
T ss_dssp ECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT-CEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCC-
T ss_pred hhhhcccccchhhCcccceeeehHhHHhhhhhhcccc-ccccccccceEecccCccccccccccCcccccccCCCCCCC-
Confidence 9998876544556678899999999999999999888 48899999855432110 1113455566555554
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-c--cCcCCCcccHHH
Q 020608 155 CRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-Y--ENFFMGSVHFKD 231 (323)
Q Consensus 155 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~v~D 231 (323)
+.||.+|.++|.+++.++++++++++++||+++|||..... ......+.....|.+.. . +.+.++|+|++|
T Consensus 157 -----s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~-~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D 230 (346)
T d1oc2a_ 157 -----SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-KFIPRQITNILAGIKPKLYGEGKNVRDWIHTND 230 (346)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-SHHHHHHHHHHHTCCCEEETTSCCEEECEEHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc-chhHHHHHHHHcCCceeEeCCCCccccccchhh
Confidence 78999999999999999988999999999999999976543 33445556666776654 3 445677999999
Q ss_pred HHHHHHHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCccccccchhH-hhhCCcc-c-CHH
Q 020608 232 VALAHILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEYDIP-RLPKDTQPGLLRTKDGAKKL-MDLGLQF-I-PMD 306 (323)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~-~~~ 306 (323)
+|++++.+++++..++.||+ +++..++.++++.+.+.++..... ............+.+|++|+ +.|||+| . +|+
T Consensus 231 ~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P~~t~l~ 310 (346)
T d1oc2a_ 231 HSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFS 310 (346)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCHH
T ss_pred HHHHHHHHHhhcccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCCcCCCHH
Confidence 99999999998888888876 578899999999999999753211 11222233445677899999 8899999 5 699
Q ss_pred HHHHHHHHHHHHc
Q 020608 307 QIIKDSVESLKAK 319 (323)
Q Consensus 307 ~~l~~~~~~~~~~ 319 (323)
++|+++++|+++|
T Consensus 311 e~i~~ti~w~~~n 323 (346)
T d1oc2a_ 311 EGLEETIQWYTDN 323 (346)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-46 Score=327.96 Aligned_cols=303 Identities=17% Similarity=0.122 Sum_probs=224.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc-HHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD-ERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
|||||||||||||++|+++|+++|++|++++|.... .......+... ..+++++++|++|.+.+.++++ ++|+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 579999999999999999999999999999874322 11112222222 2478999999999999999988 799999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+|+...++.+..++...+++|+.|+.+++++|++.+++++|++||.+++.... ..+..|+.+. ..+.++|
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~----~~~~~e~~~~-----~~p~~~Y 149 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQP----KIPYVESFPT-----GTPQSPY 149 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCC----SSSBCTTSCC-----CCCSSHH
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccc----cccccccccc-----CCCcchH
Confidence 999986655555567789999999999999999999999999999985544333 3333443322 1233779
Q ss_pred HHHHHHHHHHHHHHHHh-CCccEEEEcCCCccCCCCCCCC---------chhHHHHHHHHcCC-CCC-c--------cCc
Q 020608 163 PLSKTLAEKAAWEFAKE-KGLDVVVVNPGTVMGPVIPPTL---------NASMLMLLRLLQGC-TDT-Y--------ENF 222 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~-~~~~~~~~Rp~~v~G~~~~~~~---------~~~~~~~~~~~~g~-~~~-~--------~~~ 222 (323)
+.+|..+|.++..+..+ .+++++++||+++|||...... .....++.....+. +.. + +.+
T Consensus 150 ~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~ 229 (338)
T d1udca_ 150 GKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTG 229 (338)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSC
T ss_pred HHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCc
Confidence 99999999999876655 4899999999999998653211 12223333333322 221 1 344
Q ss_pred CCCcccHHHHHHHHHHhhcCCC---CCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hh
Q 020608 223 FMGSVHFKDVALAHILVYENPS---ACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MD 297 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 297 (323)
.++|+|++|++.++..++.... ....||++ ++++|+.|+++.+.+.++........+..........+|++|+ +.
T Consensus 230 ~rd~i~v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 309 (338)
T d1udca_ 230 VRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRE 309 (338)
T ss_dssp EECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHH
T ss_pred eeeEEEEeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCCCCCCCEeeECHHHHHHH
Confidence 5679999999998887665322 23458885 6789999999999999864321222222333445678899999 77
Q ss_pred hCCcc-cCHHHHHHHHHHHHHHc
Q 020608 298 LGLQF-IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 298 lG~~~-~~~~~~l~~~~~~~~~~ 319 (323)
|||+| ++++++|+++++|++++
T Consensus 310 lgwkp~~~l~egi~~ti~w~~~~ 332 (338)
T d1udca_ 310 LNWRVTRTLDEMAQDTWHWQSRH 332 (338)
T ss_dssp HCCCCCCCHHHHHHHHHHHHHHC
T ss_pred HCCCcCCCHHHHHHHHHHHHHhc
Confidence 99999 99999999999999998
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.8e-46 Score=329.86 Aligned_cols=304 Identities=13% Similarity=0.075 Sum_probs=228.0
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|+ ++|||||||||||||++|+++|+++||+|++++|....... ......++..+|+++.+.+.++++++|+
T Consensus 12 ~~-~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~--------~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 82 (363)
T d2c5aa1 12 PS-ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT--------EDMFCDEFHLVDLRVMENCLKVTEGVDH 82 (363)
T ss_dssp TT-SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC--------GGGTCSEEEECCTTSHHHHHHHHTTCSE
T ss_pred CC-CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh--------hhcccCcEEEeechhHHHHHHHhhcCCe
Confidence 44 78899999999999999999999999999999876533111 0113567889999999999999999999
Q ss_pred EEEcccCCccCC-CCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCC-hhhhccC
Q 020608 81 VFHLASPCIVDK-VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTD-EEYCRQN 158 (323)
Q Consensus 81 Vih~a~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~ 158 (323)
|||+|+...... ....+...+..|+.++.++++++++.++++||++||...+.... ..+.+|+.... ...+..|
T Consensus 83 Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~----~~~~~~~~~~~~e~~~~~p 158 (363)
T d2c5aa1 83 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFK----QLETTNVSLKESDAWPAEP 158 (363)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGG----SSSSSSCEECGGGGSSBCC
T ss_pred EeecccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccc----cccccccccccccCCcCCC
Confidence 999998754322 35677788999999999999999999999999999995544332 22233322111 1112234
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc---hhH-HHHHHHHcCCCCC-c--cCcCCCcccHHH
Q 020608 159 EIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN---ASM-LMLLRLLQGCTDT-Y--ENFFMGSVHFKD 231 (323)
Q Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~---~~~-~~~~~~~~g~~~~-~--~~~~~~~i~v~D 231 (323)
.+.|+.+|.++|.+++.+.+++|++++++||+++|||....... ... ..........+.. + |.+.++|+|++|
T Consensus 159 ~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D 238 (363)
T d2c5aa1 159 QDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 238 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhH
Confidence 47899999999999999998899999999999999997543221 111 1222223333322 3 345678999999
Q ss_pred HHHHHHHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHH
Q 020608 232 VALAHILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQI 308 (323)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~ 308 (323)
++.++..+++.. .++.||+ +++.+++.|+++.+.+.++... +..............+|++|+ +.|||+| ++++++
T Consensus 239 ~~~~~~~~~~~~-~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~-~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~sleeg 316 (363)
T d2c5aa1 239 CVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEKKL-PIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEG 316 (363)
T ss_dssp HHHHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTCCC-CEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHH
T ss_pred HHHHHHHHHhCC-CCCeEEEecCCcccHHHHHHHHHHHhCCCC-ceEeCCCCCCccccccCHHHHHHHhCCCCCCCHHHH
Confidence 999999998765 5567987 5889999999999999886532 222222223345567899999 7899999 999999
Q ss_pred HHHHHHHHHHc
Q 020608 309 IKDSVESLKAK 319 (323)
Q Consensus 309 l~~~~~~~~~~ 319 (323)
|+++++|++++
T Consensus 317 i~~ti~w~~~~ 327 (363)
T d2c5aa1 317 LRITYFWIKEQ 327 (363)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999765
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=3.1e-45 Score=318.64 Aligned_cols=301 Identities=17% Similarity=0.099 Sum_probs=232.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
|+|||||||||||++|+++|+++||+|++++|..+... ...++.+.. .++++++.+|++|.+.+.+.+. ..++++|
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~-~~~l~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~ 78 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT-RWRLRELGI-EGDIQYEDGDMADACSVQRAVIKAQPQEVYN 78 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC-CHHHHHTTC-GGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCccc-HHHHHHhcc-cCCcEEEEccccChHHhhhhhcccccccccc
Confidence 78999999999999999999999999999999764322 233333322 3478999999999999988777 4689999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
+|+.........++...++.|+.|+.+++++|++.+.+ +|++.||. ++|+... ....+|+++..|. ++|
T Consensus 79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~-~~~~~~~---~~~~~E~~~~~p~------~~Y 148 (321)
T d1rpna_ 79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTS-EMFGLIQ---AERQDENTPFYPR------SPY 148 (321)
T ss_dssp CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEG-GGGCSCS---SSSBCTTSCCCCC------SHH
T ss_pred ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccch-hhcCccc---CCCCCCCCCcccc------Chh
Confidence 99877665666778889999999999999999998855 67777776 6666554 5667888887665 789
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCCCCC--cc--CcCCCcccHHHHHHHH
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGCTDT--YE--NFFMGSVHFKDVALAH 236 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~~--~~--~~~~~~i~v~D~a~~~ 236 (323)
+.+|.++|.++..++++++++++++||+++|||....... .....+.+...+.... .+ .+.++|+|++|+|+++
T Consensus 149 ~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~ 228 (321)
T d1rpna_ 149 GVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAM 228 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHH
Confidence 9999999999999999999999999999999997543321 1223445555554332 34 4556799999999999
Q ss_pred HHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCCC--CCCCC--CCCCCCCccccccchhH-hhhCCcc-cCHHHHH
Q 020608 237 ILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEYD--IPRLP--KDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQII 309 (323)
Q Consensus 237 ~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l 309 (323)
..+++++.. +.||+ +++..++.++++.+.+..+... ..... ..++.....+..|++|+ +.|||+| ++++++|
T Consensus 229 ~~~~~~~~~-~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~e~i 307 (321)
T d1rpna_ 229 WLMLQQDKA-DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELI 307 (321)
T ss_dssp HHHHHSSSC-CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHH
T ss_pred HHHHhcCCc-CCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHHHHH
Confidence 999987754 56776 5788999999999999886421 11111 11122344577899999 7799999 9999999
Q ss_pred HHHHHHHHHc
Q 020608 310 KDSVESLKAK 319 (323)
Q Consensus 310 ~~~~~~~~~~ 319 (323)
++|++|+.++
T Consensus 308 ~~tv~~~l~~ 317 (321)
T d1rpna_ 308 RMMVEADLRR 317 (321)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997653
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-44 Score=317.00 Aligned_cols=307 Identities=17% Similarity=0.165 Sum_probs=226.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc-HHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD-ERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
|.|||||||||||++|+++|+++|++|+++++.... ........... ..+++++.+|++|.+.++.++. ++|+||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 79 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhc--ccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence 679999999999999999999999999999764332 22222222222 2478899999999999999887 789999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+|+..........+..++.+|+.++.+++++|++.++++||++||..+++.....+...+++|+.+..|. ++|
T Consensus 80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~------~~Y 153 (347)
T d1z45a2 80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPT------NPY 153 (347)
T ss_dssp ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCC------SHH
T ss_pred EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCC------Chh
Confidence 99998755445556678899999999999999999999999999999665544333335678888877665 789
Q ss_pred HHHHHHHHHHHHHHHHh--CCccEEEEcCCCccCCCCCCC--------CchhHHHHHHHHc--CCCCC-ccC--------
Q 020608 163 PLSKTLAEKAAWEFAKE--KGLDVVVVNPGTVMGPVIPPT--------LNASMLMLLRLLQ--GCTDT-YEN-------- 221 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~--~~~~~~~~Rp~~v~G~~~~~~--------~~~~~~~~~~~~~--g~~~~-~~~-------- 221 (323)
+.+|.++|.+++.+.+. .+++++++||+++||+..... .......+..... +.++. +++
T Consensus 154 ~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~ 233 (347)
T d1z45a2 154 GHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGT 233 (347)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSS
T ss_pred HhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCc
Confidence 99999999999988754 489999999999999753211 1112222333333 33332 333
Q ss_pred cCCCcccHHHHHHHHHHhhcCC------C-CCccEEE-EcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccch
Q 020608 222 FFMGSVHFKDVALAHILVYENP------S-ACGRHLC-VEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAK 293 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~------~-~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (323)
...+++++.|++.+++.+++.. . ....||+ +++++|+.|+++.+.+.++...................+|++
T Consensus 234 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~s 313 (347)
T d1z45a2 234 PIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPD 313 (347)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCH
T ss_pred eeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCCCCCCCEeeECHH
Confidence 2345899999999988877531 1 2344888 478899999999999998753322222333334456788999
Q ss_pred hH-hhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 294 KL-MDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 294 ~~-~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
|+ ++|||+| ++++++|+++++|+++|.
T Consensus 314 k~~~~lGw~p~~~lee~i~~ti~w~~~np 342 (347)
T d1z45a2 314 RAKRELKWQTELQVEDSCKDLWKWTTENP 342 (347)
T ss_dssp HHHHHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHhCh
Confidence 99 7799999 999999999999999985
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-44 Score=313.22 Aligned_cols=304 Identities=15% Similarity=0.160 Sum_probs=224.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHH-HhcCCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAA-AVTGCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~Vih 83 (323)
|||||||||||||++|+++|+++| ++|+++++..+.... +. ..++++++.+|+++.+++.+ +++++|+|||
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~------~~-~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih 73 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR------FL-NHPHFHFVEGDISIHSEWIEYHVKKCDVVLP 73 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG------GT-TCTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhh------hc-cCCCeEEEECccCChHHHHHHHHhCCCcccc
Confidence 589999999999999999999999 489999876432221 11 13589999999998766544 6778999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChh-hhccCCCch
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE-YCRQNEIWY 162 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~Y 162 (323)
+|+.........++...+++|+.|+.+++++|.+.++ +++++||..+++... .....|..+..+. ....+.+.|
T Consensus 74 ~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~Y 148 (342)
T d2blla1 74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCS----DKYFDEDHSNLIVGPVNKPRWIY 148 (342)
T ss_dssp CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCC----CSSBCTTTCCCBCCCTTCGGGHH
T ss_pred ccccccccccccCCccccccccccccccccccccccc-ccccccccccccccc----ccccccccccccccccCCCcchh
Confidence 9998765555566678899999999999999999985 667888885555443 3333333322211 111233679
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC-------CchhHHHHHHHHcCCCCC-cc--CcCCCcccHHHH
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT-------LNASMLMLLRLLQGCTDT-YE--NFFMGSVHFKDV 232 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~~~~-~~--~~~~~~i~v~D~ 232 (323)
+.+|.++|.++..++++++++++++||+.+|||..... ......++.++..|++.. .+ .+.++|+|++|+
T Consensus 149 ~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~ 228 (342)
T d2blla1 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDG 228 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHH
T ss_pred hhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccccc
Confidence 99999999999999999999999999999999864332 123446677888888765 33 456679999999
Q ss_pred HHHHHHhhcCCC--C-CccEEEE-cC-ccCHHHHHHHHHHHCCCCC----CCCCCC-----------CCCCCCccccccc
Q 020608 233 ALAHILVYENPS--A-CGRHLCV-EA-ISHYGDFVAKVAELYPEYD----IPRLPK-----------DTQPGLLRTKDGA 292 (323)
Q Consensus 233 a~~~~~~~~~~~--~-~~~~~~~-~~-~~~~~e~~~~i~~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~ 292 (323)
|+++..+++++. . +..||++ ++ .+|+.|+++.+.+.++... +|.... ..........+|+
T Consensus 229 ~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 308 (342)
T d2blla1 229 IEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSI 308 (342)
T ss_dssp HHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCC
T ss_pred cceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccccccccccccccCH
Confidence 999999998743 2 3459984 54 4799999999998875321 111111 0111223456799
Q ss_pred hhH-hhhCCcc-cCHHHHHHHHHHHHHHcCC
Q 020608 293 KKL-MDLGLQF-IPMDQIIKDSVESLKAKGF 321 (323)
Q Consensus 293 ~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~~ 321 (323)
+|+ ++|||+| ++++++|+++++||+++.=
T Consensus 309 ~k~~~~lgw~P~~sleegl~~ti~~y~~~~~ 339 (342)
T d2blla1 309 RNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339 (342)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCcCCCHHHHHHHHHHHHHhCcC
Confidence 999 7899999 9999999999999988753
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-43 Score=311.01 Aligned_cols=304 Identities=18% Similarity=0.133 Sum_probs=221.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC-------cHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-------DERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
|||||||||||||++|+++|+++|++|++++|... ............ ..++.++.+|++|.+.+++++.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~ 80 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLFKKY 80 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhc--CCCcEEEEeecccccccccccccc
Confidence 89999999999999999999999999999974211 112222222222 3578999999999999998876
Q ss_pred CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhc
Q 020608 77 GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCR 156 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 156 (323)
.+++++|+|+......+..++.+.+++|+.++.++++++++.++++|+++||...++.... .....++....
T Consensus 81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~---~~~~~~~~~~~----- 152 (346)
T d1ek6a_ 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQY---LPLDEAHPTGG----- 152 (346)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSS---SSBCTTSCCCC-----
T ss_pred ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeecccc---ccccccccccc-----
Confidence 4568999999876655556678899999999999999999999999999999955544332 11222222222
Q ss_pred cCCCchHHHHHHHHHHHHHHHHh-CCccEEEEcCCCccCCCCCCC--------CchhHHH-HHHHH-cCCCCC-------
Q 020608 157 QNEIWYPLSKTLAEKAAWEFAKE-KGLDVVVVNPGTVMGPVIPPT--------LNASMLM-LLRLL-QGCTDT------- 218 (323)
Q Consensus 157 ~~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~Rp~~v~G~~~~~~--------~~~~~~~-~~~~~-~g~~~~------- 218 (323)
+.++|+.+|..+|..+..+++. .+++.+++||+++|||..... ....... +..+. ++.+..
T Consensus 153 -~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~ 231 (346)
T d1ek6a_ 153 -CTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYD 231 (346)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSS
T ss_pred -cCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCccc
Confidence 2267999999999999988765 499999999999999854311 1111222 22222 222211
Q ss_pred --ccCcCCCcccHHHHHHHHHHhhcCCC---CCccEEEE-cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccc
Q 020608 219 --YENFFMGSVHFKDVALAHILVYENPS---ACGRHLCV-EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGA 292 (323)
Q Consensus 219 --~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (323)
.+.+.++|+|++|+|.++..++.... ....||++ ++.+++.|+++.+.+.++........+..+.+......|+
T Consensus 232 ~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~~~~d~ 311 (346)
T d1ek6a_ 232 TEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANP 311 (346)
T ss_dssp SSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCC
T ss_pred CCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCEeeECH
Confidence 23445679999999999988765422 23458875 6789999999999999975321112222333445678899
Q ss_pred hhH-hhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 293 KKL-MDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 293 ~~~-~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
+|+ +.|||+| ++++|+|+++++|+++|.
T Consensus 312 ~k~~~~lgw~p~~slee~I~~~i~w~~~n~ 341 (346)
T d1ek6a_ 312 SLAQEELGWTAALGLDRMCEDLWRWQKQNP 341 (346)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCcCCCHHHHHHHHHHHHHhCH
Confidence 999 7799999 999999999999999885
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-44 Score=312.96 Aligned_cols=299 Identities=18% Similarity=0.120 Sum_probs=222.1
Q ss_pred ceE-EEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhc-----cCCCCCeEEEEccCCCHhHHHHHhc--C
Q 020608 6 EVV-CVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL-----EGADTRLRLFQIDLLDYDAIAAAVT--G 77 (323)
Q Consensus 6 ~~v-lItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~~~~~~~~~~~--~ 77 (323)
||| ||||||||||++|+++|+++||+|++++|.++.... ...+.+ .....+++++.+|++|.+.+.+++. +
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 79 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNT-GRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 79 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC-TTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccch-hhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence 678 999999999999999999999999999996542110 111111 0112478999999999999999887 5
Q ss_pred CCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc---CEEEEecccccccCCCCCCCCccccCCCCCChhh
Q 020608 78 CTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV---KRVVVTSSISSITPSPKWPADKVKDEDCWTDEEY 154 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~ 154 (323)
+++|+|+|+...+.....++...+++|+.||.++++++++.++ ++|||+||. ++|+... ..+++|+++..|.
T Consensus 80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~-~vyg~~~---~~~~~E~~~~~P~- 154 (347)
T d1t2aa_ 80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTS-ELYGKVQ---EIPQKETTPFYPR- 154 (347)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEG-GGTCSCS---SSSBCTTSCCCCC-
T ss_pred cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecch-heecCCC---CCCCCCCCCCCCC-
Confidence 7899999987655445566677889999999999999998764 489999998 5555443 6689999988765
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhH---HHHHHHHcCCCCC-c--cCcCCCccc
Q 020608 155 CRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASM---LMLLRLLQGCTDT-Y--ENFFMGSVH 228 (323)
Q Consensus 155 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~---~~~~~~~~g~~~~-~--~~~~~~~i~ 228 (323)
++|+.||+++|.+++.++++++++++++||+++|||.......... .++.....+.+.. . +.+.++|+|
T Consensus 155 -----~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~ 229 (347)
T d1t2aa_ 155 -----SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGH 229 (347)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEE
T ss_pred -----CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeE
Confidence 7899999999999999998899999999999999997554332111 2233333344333 3 344677999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCCCCCCCC---------C------------CCCCCCc
Q 020608 229 FKDVALAHILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEYDIPRLP---------K------------DTQPGLL 286 (323)
Q Consensus 229 v~D~a~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~---------~------------~~~~~~~ 286 (323)
++|+|+++..++++... +.|++ .....++.+..+.+...++........ . .++....
T Consensus 230 v~D~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~ 308 (347)
T d1t2aa_ 230 AKDYVEAMWLMLQNDEP-EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVD 308 (347)
T ss_dssp HHHHHHHHHHHHHSSSC-CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCC
T ss_pred ecHHHHHHHHHhhcCCC-ccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcC
Confidence 99999999999987654 45665 567789999999888877542100000 0 0111223
Q ss_pred cccccchhH-hhhCCcc-cCHHHHHHHHHHHH
Q 020608 287 RTKDGAKKL-MDLGLQF-IPMDQIIKDSVESL 316 (323)
Q Consensus 287 ~~~~~~~~~-~~lG~~~-~~~~~~l~~~~~~~ 316 (323)
.+.+|++|+ ++|||+| ++|+|+|++|++|.
T Consensus 309 ~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~ 340 (347)
T d1t2aa_ 309 FLQGDCTKAKQKLNWKPRVAFDELVREMVHAD 340 (347)
T ss_dssp BCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHH
T ss_pred EeeECHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 456799999 7799999 99999999998653
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.2e-44 Score=312.62 Aligned_cols=302 Identities=16% Similarity=0.083 Sum_probs=227.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-----CCCCCeEEEEccCCCHhHHHHHhc--CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-----GADTRLRLFQIDLLDYDAIAAAVT--GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 78 (323)
|++||||||||||++|+++|+++||+|++++|..+.... .....+. .....++++.+|+++.+.+...++ ++
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~ 80 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNT-QRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 80 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC-TTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccch-hhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence 789999999999999999999999999999996532110 1111111 112467899999999999998876 68
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-----CcCEEEEecccccccCCCCCCCCccccCCCCCChh
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-----GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE 153 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~ 153 (323)
|+|||+|+........+++...++.|+.++.++++++++. ...++++.||. .+++.. ..+++|+++..|.
T Consensus 81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~-~~~~~~----~~~~~E~~~~~p~ 155 (339)
T d1n7ha_ 81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSS-EMFGST----PPPQSETTPFHPR 155 (339)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEG-GGGTTS----CSSBCTTSCCCCC
T ss_pred chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccc-eecccC----CCCCCCCCCCCCc
Confidence 9999999986554455677889999999999999998653 23467777776 455443 5678999887765
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchh--HHHHHHHHcCCCC-C-c--cCcCCCcc
Q 020608 154 YCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNAS--MLMLLRLLQGCTD-T-Y--ENFFMGSV 227 (323)
Q Consensus 154 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~--~~~~~~~~~g~~~-~-~--~~~~~~~i 227 (323)
+.|+.+|.++|.++..+++.++++++++||++||||......... ...+.....+... . . +.+.++|+
T Consensus 156 ------~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~ 229 (339)
T d1n7ha_ 156 ------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWG 229 (339)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECE
T ss_pred ------chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccce
Confidence 789999999999999999999999999999999999765433211 1222333334332 2 3 34566799
Q ss_pred cHHHHHHHHHHhhcCCCCCccEEEEcCccCHHHHHHHHHHHCCCCCCC--C--CCCCCCCCCccccccchhH-hhhCCcc
Q 020608 228 HFKDVALAHILVYENPSACGRHLCVEAISHYGDFVAKVAELYPEYDIP--R--LPKDTQPGLLRTKDGAKKL-MDLGLQF 302 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~-~~lG~~~ 302 (323)
|++|+|+++..+++++...+.++..+...++.++++.+.+.++..... . .....+.....+..|++|+ +.|||+|
T Consensus 230 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~P 309 (339)
T d1n7ha_ 230 FAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKP 309 (339)
T ss_dssp EHHHHHHHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCC
T ss_pred eeehHHHHHHHHHhcCCCCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCCc
Confidence 999999999999998876655666788899999999999998643111 0 0111223334567899999 7799999
Q ss_pred -cCHHHHHHHHHHHHHHc
Q 020608 303 -IPMDQIIKDSVESLKAK 319 (323)
Q Consensus 303 -~~~~~~l~~~~~~~~~~ 319 (323)
++++++|++|++|+.+.
T Consensus 310 ~~~le~gi~~ti~~~~~~ 327 (339)
T d1n7ha_ 310 QVGFEKLVKMMVDEDLEL 327 (339)
T ss_dssp CSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 99999999999998754
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.2e-43 Score=316.95 Aligned_cols=313 Identities=20% Similarity=0.192 Sum_probs=223.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecC---------------C--CcHHHHHHHhhccCCCCCeEEEEccCCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN---------------L--SDERETAHLKALEGADTRLRLFQIDLLD 67 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~---------------~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 67 (323)
+|||||||||||||++|+++|+++||+|++++.- + ...........+. +.+++++.+|++|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~Dl~d 78 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT--GKSIELYVGDICD 78 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH--CCCCEEEESCTTS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhc--CCCcEEEEccCCC
Confidence 6899999999999999999999999999998511 0 0011111111111 3478999999999
Q ss_pred HhHHHHHhc--CCCEEEEcccCCccCCCC---CchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCCC-
Q 020608 68 YDAIAAAVT--GCTGVFHLASPCIVDKVE---DPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWPA- 140 (323)
Q Consensus 68 ~~~~~~~~~--~~d~Vih~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~- 140 (323)
.+.++++++ ++|+|||+|+....+.+. ..+...+++|+.||.+++++|++.+++ ++++.||. ++++....+.
T Consensus 79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~-~~~~~~~~~~~ 157 (393)
T d1i24a_ 79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTM-GEYGTPNIDIE 157 (393)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCG-GGGCCCSSCBC
T ss_pred HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccc-ccccccccccc
Confidence 999999988 579999999976544322 334567899999999999999998766 56666665 6665432111
Q ss_pred --CccccCCCCCC-hhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCC----------------C
Q 020608 141 --DKVKDEDCWTD-EEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPT----------------L 201 (323)
Q Consensus 141 --~~~~~e~~~~~-~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~----------------~ 201 (323)
.....|+.... ...+..+.++|+.+|+++|.++..++++++++++++||+++|||+.... .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 237 (393)
T d1i24a_ 158 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 237 (393)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred cccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccc
Confidence 01112211100 0012234477999999999999999999999999999999999975421 1
Q ss_pred chhHHHHHHHHcCCCCC-ccC--cCCCcccHHHHHHHHHHhhcCCCCCccEE---EEcCccCHHHHHHHHHHHCCCCC--
Q 020608 202 NASMLMLLRLLQGCTDT-YEN--FFMGSVHFKDVALAHILVYENPSACGRHL---CVEAISHYGDFVAKVAELYPEYD-- 273 (323)
Q Consensus 202 ~~~~~~~~~~~~g~~~~-~~~--~~~~~i~v~D~a~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~i~~~~~~~~-- 273 (323)
.....++.+...|++.. +++ +.++|+|++|+|+++..++++....+.++ .+++.+++.|+++.+.+..+...
T Consensus 238 ~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~ 317 (393)
T d1i24a_ 238 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLD 317 (393)
T ss_dssp CHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCC
T ss_pred cchhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhCCC
Confidence 12345666777887765 344 45679999999999999999887777654 34577899999999988764321
Q ss_pred CCCC---CCCCCCCCccccccchhHhhhCCcc-cCHHHHHHHHHHHHHHcC
Q 020608 274 IPRL---PKDTQPGLLRTKDGAKKLMDLGLQF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 274 ~~~~---~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~l~~~~~~~~~~~ 320 (323)
++.. .+........+..|++|+++|||+| ++++++++++++|++++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~k 368 (393)
T d1i24a_ 318 VKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFK 368 (393)
T ss_dssp CCEEEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTG
T ss_pred cceeeccCCCCCCCccEecCCHHHHHHcCCccccCHHHHHHHHHHHHHHHH
Confidence 1111 1112233445678899997799999 999999999999988763
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.3e-44 Score=309.52 Aligned_cols=289 Identities=15% Similarity=0.097 Sum_probs=216.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
.|||||||||||||++|+++|+++|+.|+++.+.. ..|+.+.+.+.++++ .+|.|+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~----------------------~~~~~~~~~~~~~~~~~~~d~v~ 59 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASERIDQVY 59 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch----------------------hccccCHHHHHHHHhhcCCCEEE
Confidence 57999999999999999999999999988764321 378999999988876 589999
Q ss_pred EcccCCccC-CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 83 HLASPCIVD-KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 83 h~a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
|+|+..... ....+....+++|+.+|.+++++|++.++++|||+||.++|++.. ..+++|+.+....+ ..+.++
T Consensus 60 ~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~----~~~~~E~~~~~~~~-~~~~~~ 134 (315)
T d1e6ua_ 60 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLA----KQPMAESELLQGTL-EPTNEP 134 (315)
T ss_dssp ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTC----CSSBCGGGTTSSCC-CGGGHH
T ss_pred EcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCC----CCCccCCccccCCC-CCCCCH
Confidence 999765321 123445667899999999999999999999999999996554433 45677765543321 112256
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc---hhH-----HHHHHHHcCCCCC-cc--CcCCCcccHH
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN---ASM-----LMLLRLLQGCTDT-YE--NFFMGSVHFK 230 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~---~~~-----~~~~~~~~g~~~~-~~--~~~~~~i~v~ 230 (323)
|+.+|+++|++++.+.+++|++++++||++||||+...... ... ........+.+.. .+ ...++|+|++
T Consensus 135 Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~ 214 (315)
T d1e6ua_ 135 YAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVD 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEee
Confidence 99999999999999998999999999999999997653321 111 1123333444433 33 3456799999
Q ss_pred HHHHHHHHhhcCCC---------CCccEEE-EcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhHhhhCC
Q 020608 231 DVALAHILVYENPS---------ACGRHLC-VEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKLMDLGL 300 (323)
Q Consensus 231 D~a~~~~~~~~~~~---------~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ 300 (323)
|++.++..++.+.. ..+.++. ++...++.++++.+.+.++......+....+.....+.+|++|+++|||
T Consensus 215 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~sk~k~Lg~ 294 (315)
T d1e6ua_ 215 DMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGW 294 (315)
T ss_dssp HHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHHTTC
T ss_pred hhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHHHHHHcCC
Confidence 99999999886532 2234665 5778899999999999886543222222233344456789999988999
Q ss_pred cc-cCHHHHHHHHHHHHHHcC
Q 020608 301 QF-IPMDQIIKDSVESLKAKG 320 (323)
Q Consensus 301 ~~-~~~~~~l~~~~~~~~~~~ 320 (323)
+| ++++++|+++++||++|.
T Consensus 295 ~p~~~l~e~i~~ti~w~~~N~ 315 (315)
T d1e6ua_ 295 YHEISLEAGLASTYQWFLENQ 315 (315)
T ss_dssp CCCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHcC
Confidence 99 999999999999999874
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=5.7e-43 Score=306.77 Aligned_cols=309 Identities=27% Similarity=0.313 Sum_probs=227.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
++|+|||||||||||++|+++|+++|++|+++.|+.++...................+.+|+.|.+.+.+++.++|+|+|
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~ 89 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH 89 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence 57999999999999999999999999999999997644333322222222233445688999999999999999999999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcCEEEEecccccccCCCCCCCCccccCCCCCCh----------
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDE---------- 152 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~---------- 152 (323)
+|+.... ..++...+++|+.||.+++++|.+. ++++|||+||+++++............|+.+...
T Consensus 90 ~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e 166 (342)
T d1y1pa1 90 IASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPE 166 (342)
T ss_dssp CCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCT
T ss_pred hcccccc---cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccccccc
Confidence 9987543 3456778899999999999999886 5899999999866554332222233344332111
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCC--CchhHHHHHHHHcCCCCC--ccCcCCCc
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPT--LNASMLMLLRLLQGCTDT--YENFFMGS 226 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~--~~~~~~~~~~~~~g~~~~--~~~~~~~~ 226 (323)
..+..+.++|+.+|..+|.+++.+++++ +++++++||+.+|||...+. ......++..+..|.... .+.+.++|
T Consensus 167 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 246 (342)
T d1y1pa1 167 SDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYY 246 (342)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEE
T ss_pred cCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccCCccceee
Confidence 1111222679999999999999998775 57889999999999964322 234456677777877654 34555669
Q ss_pred ccHHHHHHHHHHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCcc--ccccchhHhhhCCcc-
Q 020608 227 VHFKDVALAHILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLR--TKDGAKKLMDLGLQF- 302 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lG~~~- 302 (323)
+|++|+|++++.+++++...|.|++ +++.+++.|+++.|.+.+|...++...+........ ...+.++++.|||.+
T Consensus 247 v~v~Dva~~~i~~l~~~~~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~~~~~~~~~~~~s~~~~k~lg~~~~ 326 (342)
T d1y1pa1 247 VSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGW 326 (342)
T ss_dssp EEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCCCCEECCHHHHHHHHHTTCCSC
T ss_pred eeHHHHHHHHHHhhcCccccceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCccCcccccccchHHHHHHHHcCCCCC
Confidence 9999999999999998888887665 678899999999999999876665544332222111 222344458899999
Q ss_pred cCHHHHHHHHHHH
Q 020608 303 IPMDQIIKDSVES 315 (323)
Q Consensus 303 ~~~~~~l~~~~~~ 315 (323)
++++++|+++++.
T Consensus 327 ~~lee~i~d~I~s 339 (342)
T d1y1pa1 327 RSIEESIKDLVGS 339 (342)
T ss_dssp CCHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999864
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=5.1e-43 Score=311.79 Aligned_cols=309 Identities=17% Similarity=0.098 Sum_probs=224.5
Q ss_pred CceEEEeccccHHHHHHHHHHHH-CCCEEEEEecCC---------CcHHH-HHHHhhc-----cCCCCCeEEEEccCCCH
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLE-RRYTVHATVKNL---------SDERE-TAHLKAL-----EGADTRLRLFQIDLLDY 68 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~---------~~~~~-~~~~~~~-----~~~~~~~~~~~~Dl~~~ 68 (323)
.|||||||||||||++|+++|++ .|++|+++++-. ..... ....... ........++.+|++|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 46999999999999999999996 689999987411 11111 1111111 11234678999999999
Q ss_pred hHHHHHhc---CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCC---CCCc
Q 020608 69 DAIAAAVT---GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKW---PADK 142 (323)
Q Consensus 69 ~~~~~~~~---~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~---~~~~ 142 (323)
+.+.++++ ++|+|||+|+........+.+...+++|+.++.++++++++.++++++++||.+.+...... ....
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 161 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE 161 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccccc
Confidence 99998886 67999999998765545556677889999999999999999999999999998555433321 1123
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC--------chhHHHHHHHHc-
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL--------NASMLMLLRLLQ- 213 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~--------~~~~~~~~~~~~- 213 (323)
++.|+++..|. ++|+.+|..+|.++..+.+.+|++++++||+++|||...... ...+.++.++..
T Consensus 162 ~~~e~~~~~p~------~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~ 235 (383)
T d1gy8a_ 162 PIDINAKKSPE------SPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSD 235 (383)
T ss_dssp CBCTTSCCBCS------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHH
T ss_pred ccccccCCCCC------CHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhh
Confidence 45666555554 889999999999999999889999999999999999865332 112222222221
Q ss_pred ---------------CCCCC---------ccCcCCCcccHHHHHHHHHHhhcCCC---------CCccEEE-EcCccCHH
Q 020608 214 ---------------GCTDT---------YENFFMGSVHFKDVALAHILVYENPS---------ACGRHLC-VEAISHYG 259 (323)
Q Consensus 214 ---------------g~~~~---------~~~~~~~~i~v~D~a~~~~~~~~~~~---------~~~~~~~-~~~~~~~~ 259 (323)
+.+.. .|.+.++|+|++|+|++++.+++... ..+.||+ +++++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~ 315 (383)
T d1gy8a_ 236 IAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVR 315 (383)
T ss_dssp HSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHH
T ss_pred ccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHH
Confidence 11111 13345679999999999999886311 2235888 57889999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-hhhCCcc-cCHHHHHHHH-HHHHHHc
Q 020608 260 DFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL-MDLGLQF-IPMDQIIKDS-VESLKAK 319 (323)
Q Consensus 260 e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lG~~~-~~~~~~l~~~-~~~~~~~ 319 (323)
|+++.+.+.++..........+..+...+..|++|+ +.|||+| ++++++|+++ +.|++.+
T Consensus 316 el~~~i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~ 378 (383)
T d1gy8a_ 316 EVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH 378 (383)
T ss_dssp HHHHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCceEECCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhC
Confidence 999999999864321112222223445678899999 7799999 9999999887 6899887
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=5.8e-42 Score=302.03 Aligned_cols=303 Identities=18% Similarity=0.093 Sum_probs=225.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 81 (323)
++|||||||||||||++|+++|+++|++|++++|+.+.......... ...+++++.+|++|++.+.++++ .+|+|
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~---~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v 83 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR---VADGMQSEIGDIRDQNKLLESIREFQPEIV 83 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT---TTTTSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhh---cccCCeEEEeeccChHhhhhhhhhchhhhh
Confidence 57999999999999999999999999999999998754332221111 13479999999999999998877 67999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
+|+|+......+...+...+++|+.++.++++++++.+.. .+++.||. .++..... ..+.+|+.+..|. +
T Consensus 84 ~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~-~~~~~~~~--~~~~~~~~~~~p~------~ 154 (356)
T d1rkxa_ 84 FHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSD-KCYDNKEW--IWGYRENEAMGGY------D 154 (356)
T ss_dssp EECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCG-GGBCCCCS--SSCBCTTSCBCCS------S
T ss_pred hhhhccccccccccCCccccccccccchhhhhhhhcccccccccccccc-cccccccc--ccccccccccCCC------C
Confidence 9999986554456677889999999999999999887644 55555554 55544332 4566676665554 7
Q ss_pred chHHHHHHHHHHHHHHHHh---------CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC--ccCcCCCcccH
Q 020608 161 WYPLSKTLAEKAAWEFAKE---------KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT--YENFFMGSVHF 229 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~---------~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~i~v 229 (323)
+|+.+|..+|..+..++.+ +++.++++||+++|||++.........++..+..+.+.. .+.+.++++|+
T Consensus 155 ~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (356)
T d1rkxa_ 155 PYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHV 234 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEET
T ss_pred ccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCceEEeecccccccccc
Confidence 7999999999988877653 467899999999999987554444455566666666544 45556779999
Q ss_pred HHHHHHHHHhhcCCCCCcc-----EEE---EcCccCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCccccccchhH-hhhC
Q 020608 230 KDVALAHILVYENPSACGR-----HLC---VEAISHYGDFVAKVAELYPEYD-IPRLPKDTQPGLLRTKDGAKKL-MDLG 299 (323)
Q Consensus 230 ~D~a~~~~~~~~~~~~~~~-----~~~---~~~~~~~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~lG 299 (323)
+|+|.++..++.+....+. .+. ....+++.++++.+.+.++... +.......+.....+.+|++|+ ++||
T Consensus 235 ~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LG 314 (356)
T d1rkxa_ 235 LEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLG 314 (356)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHC
T ss_pred ccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHHHC
Confidence 9999999998876443222 222 2456899999999999986432 1111112222344567899999 7899
Q ss_pred Ccc-cCHHHHHHHHHHHHHH
Q 020608 300 LQF-IPMDQIIKDSVESLKA 318 (323)
Q Consensus 300 ~~~-~~~~~~l~~~~~~~~~ 318 (323)
|+| ++++++|+++++||++
T Consensus 315 w~P~~~l~egi~~ti~wyk~ 334 (356)
T d1rkxa_ 315 WHPRWNLNTTLEYIVGWHKN 334 (356)
T ss_dssp CCCCCCHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHH
Confidence 999 9999999999999986
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=2.6e-41 Score=295.48 Aligned_cols=304 Identities=15% Similarity=0.076 Sum_probs=223.1
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcC--CCEEEEc
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTG--CTGVFHL 84 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~Vih~ 84 (323)
||||||||||||++|+++|+++|++|+++++-.... .......+.. ..+++++.+|++|.+.+.+++++ +|+|||+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~-~~~~~~~~~~-~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~ 79 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKG-ATDNLHWLSS-LGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 79 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTT-HHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccc-chhHHHHhhc-cCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence 799999999999999999999999999987533222 2222332222 35789999999999999999874 6999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCC-------------ccccCCCCCC
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPAD-------------KVKDEDCWTD 151 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~-------------~~~~e~~~~~ 151 (323)
|+.........++...+++|+.||.++++++.+.+++++++.||++++++....... ....+..+.
T Consensus 80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (338)
T d1orra_ 80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL- 158 (338)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC-
T ss_pred cccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcc-
Confidence 998765445556788999999999999999999998888888887677765431110 111111222
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHH-----cCCCCC-cc--C
Q 020608 152 EEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLL-----QGCTDT-YE--N 221 (323)
Q Consensus 152 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~-----~g~~~~-~~--~ 221 (323)
.+.+.|+.+|...|.++..+.+.++....++|++++|++....... ....++..+. .+++.. .+ .
T Consensus 159 -----~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 233 (338)
T d1orra_ 159 -----DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGK 233 (338)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSC
T ss_pred -----ccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCc
Confidence 2336799999999999999998899999999999999876543221 1222333322 244443 33 3
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEEEE---cCccCHHHHHHHHHHHCCCCCCCCCCCCCCCCCccccccchhH-
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHLCV---EAISHYGDFVAKVAELYPEYDIPRLPKDTQPGLLRTKDGAKKL- 295 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~---~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (323)
..++|+|++|+|++++.++++.. .+..|++. +..+++.|++..+.+.++........+........+..|++|+
T Consensus 234 ~~r~~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 313 (338)
T d1orra_ 234 QVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKIT 313 (338)
T ss_dssp CEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHHH
T ss_pred eeEeeecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCCCCCcCeeeECHHHHH
Confidence 45679999999999999997643 23457763 4578999999999998864321112222223445577899999
Q ss_pred hhhCCcc-cCHHHHHHHHHHHHHH
Q 020608 296 MDLGLQF-IPMDQIIKDSVESLKA 318 (323)
Q Consensus 296 ~~lG~~~-~~~~~~l~~~~~~~~~ 318 (323)
++|||+| ++++++|+++++|++.
T Consensus 314 ~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 314 NAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp HHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHCCCcCCCHHHHHHHHHHHHHc
Confidence 7899999 9999999999999986
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=1.1e-37 Score=265.43 Aligned_cols=269 Identities=16% Similarity=0.079 Sum_probs=211.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
|||||||||||||++|+++|.++||+|++++|+ .+|++|.+.++++++ ++|+|||
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~-----------------------~~D~~d~~~~~~~l~~~~~d~vih 58 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNVLAVNKFFNEKKPNVVIN 58 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeech-----------------------hccCCCHHHHHHHHHHcCCCEEEe
Confidence 679999999999999999999999999999874 268999999999887 6799999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+|+..........+......|+..+.++.+.++..+ ..++++||..+++... ..+..|+++..+. +.|+
T Consensus 59 ~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~~ss~~v~~~~~----~~~~~e~~~~~~~------~~~~ 127 (281)
T d1vl0a_ 59 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG-AEIVQISTDYVFDGEA----KEPITEFDEVNPQ------SAYG 127 (281)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT-CEEEEEEEGGGSCSCC----SSCBCTTSCCCCC------SHHH
T ss_pred eccccccccccccchhhccccccccccccccccccc-ccccccccceeeeccc----cccccccccccch------hhhh
Confidence 999876555556667788899999999999887775 5788888875544433 5677888776664 6799
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhcC
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
.+|...|.++. +.+.+++++||+++|||+.+ ....++..+..+.+.. .+++.++++|++|+++++..++++
T Consensus 128 ~~k~~~e~~~~----~~~~~~~i~R~~~vyG~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~ 199 (281)
T d1vl0a_ 128 KTKLEGENFVK----ALNPKYYIVRTAWLYGDGNN----FVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDE 199 (281)
T ss_dssp HHHHHHHHHHH----HHCSSEEEEEECSEESSSSC----HHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHH----HhCCCccccceeEEeCCCcc----cccchhhhhccCCceeecCCceeccchhhhhhhhhhhhhhh
Confidence 99999998874 45789999999999999743 3445566666666544 677788899999999999999987
Q ss_pred CCCCccEEE-EcCccCHHHHHHHHHHHCCCC----CCCCCC-CCCCCCCccccccchhH-hhhCCcccCHHHHHHHHHHH
Q 020608 243 PSACGRHLC-VEAISHYGDFVAKVAELYPEY----DIPRLP-KDTQPGLLRTKDGAKKL-MDLGLQFIPMDQIIKDSVES 315 (323)
Q Consensus 243 ~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~-~~lG~~~~~~~~~l~~~~~~ 315 (323)
... |.||+ +++.+|+.|+++.+++.++.. +++... +.....+....+|++|+ +.+||+|.+++++|++++++
T Consensus 200 ~~~-g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~~~~~~l~~~l~~ 278 (281)
T d1vl0a_ 200 KNY-GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITREWKESLKEYIDL 278 (281)
T ss_dssp TCC-EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHHHH
T ss_pred ccc-CceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 654 67876 578899999999999998642 111111 11111123346899999 77999998999999999999
Q ss_pred HH
Q 020608 316 LK 317 (323)
Q Consensus 316 ~~ 317 (323)
++
T Consensus 279 l~ 280 (281)
T d1vl0a_ 279 LQ 280 (281)
T ss_dssp HT
T ss_pred hc
Confidence 85
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-35 Score=255.09 Aligned_cols=285 Identities=16% Similarity=0.109 Sum_probs=189.1
Q ss_pred EEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHH-HH-----hcCCCE
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIA-AA-----VTGCTG 80 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~-~~-----~~~~d~ 80 (323)
|||||||||||++|+++|+++|+ +|+++++-... ......... ...|..+.+++. .. +..+++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG-TKFVNLVDL---------NIADYMDKEDFLIQIMAGEEFGDVEA 71 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSG-GGGHHHHTS---------CCSEEEEHHHHHHHHHTTCCCSSCCE
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCc-chhhccccc---------chhhhccchHHHHHHhhhhcccchhh
Confidence 89999999999999999999995 78888644322 222222211 123333333222 22 236799
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|+|+|+.... ...+.....+.|+.++.+++++++..+++ +++.||..++++.. .....|+.+..+ .+
T Consensus 72 i~~~aa~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~v~~ss~~~~~~~~----~~~~~~~~~~~~------~~ 138 (307)
T d1eq2a_ 72 IFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRT----SDFIESREYEKP------LN 138 (307)
T ss_dssp EEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCC-EEEEEEGGGGTTCC----SCBCSSGGGCCC------SS
T ss_pred hhhhcccccc--ccccccccccccccccccccccccccccc-cccccccccccccc----cccccccccccc------cc
Confidence 9999986544 33455667888899999999999998875 66666664665543 333444433333 37
Q ss_pred chHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCC---chhHHHHHHHHcCCCCC--cc--CcCCCcccHHHHH
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTL---NASMLMLLRLLQGCTDT--YE--NFFMGSVHFKDVA 233 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~--~~--~~~~~~i~v~D~a 233 (323)
.|+.+|..+|.+++.++.+++++++++||+++|||...... .....+...+..++... .+ ...++|+|++|++
T Consensus 139 ~Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~ 218 (307)
T d1eq2a_ 139 VYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA 218 (307)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHH
T ss_pred ccccccchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHH
Confidence 79999999999999999999999999999999999764321 22334455666665443 23 3456799999999
Q ss_pred HHHHHhhcCCCCCccEEE-EcCccCHHHHHHHHHHHCCCCCCCCCC--CC-CCCCCccccccchhH-hhhCCcc-cCHHH
Q 020608 234 LAHILVYENPSACGRHLC-VEAISHYGDFVAKVAELYPEYDIPRLP--KD-TQPGLLRTKDGAKKL-MDLGLQF-IPMDQ 307 (323)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-~~lG~~~-~~~~~ 307 (323)
+++..++++.. .+.||+ +++.++++|+++++.+..+...+.... .. ..........|++|+ +.+||+| +++++
T Consensus 219 ~~~~~~~~~~~-~~~~~~~~~~~~si~~i~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~e 297 (307)
T d1eq2a_ 219 DVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 297 (307)
T ss_dssp HHHHHHHHHCC-CEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHHTTCCCCCCCHHH
T ss_pred HHHHHHhhhcc-ccccccccccchhHHHHHHHHHHhcCCCCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCHHH
Confidence 99999998654 457887 588999999999998876543322111 11 111122345699999 7789999 99999
Q ss_pred HHHHHHHHH
Q 020608 308 IIKDSVESL 316 (323)
Q Consensus 308 ~l~~~~~~~ 316 (323)
+|+++++|+
T Consensus 298 gi~~~i~w~ 306 (307)
T d1eq2a_ 298 GVTEYMAWL 306 (307)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 999999995
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-34 Score=246.68 Aligned_cols=276 Identities=16% Similarity=0.073 Sum_probs=200.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFH 83 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih 83 (323)
|||||||||||||++|+++|.++|+.|. +.++... +.+|++|.+.++++++ ++|+|||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~~-------------------~~~Dl~~~~~~~~~i~~~~~D~Vih 60 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKE-------------------FCGDFSNPKGVAETVRKLRPDVIVN 60 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCSS-------------------SCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCcc-------------------ccCcCCCHHHHHHHHHHcCCCEEEE
Confidence 5799999999999999999998887554 4443211 3589999999999887 5699999
Q ss_pred cccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchH
Q 020608 84 LASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYP 163 (323)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~ 163 (323)
+||...+..+...+...+++|+.++.++++++++.+ .+++++||...++... ..+++|+.+..|. +.|+
T Consensus 61 ~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~~ss~~~~~~~~----~~~~~E~~~~~p~------~~y~ 129 (298)
T d1n2sa_ 61 AAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG-AWVVHYSTDYVFPGTG----DIPWQETDATSPL------NVYG 129 (298)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT-CEEEEEEEGGGSCCCT----TCCBCTTSCCCCS------SHHH
T ss_pred ecccccccccccCccccccccccccccchhhhhccc-cccccccccccccCCC----CCCCccccccCCC------chHh
Confidence 999876666677888899999999999999999887 4788888885555443 6678998887665 7799
Q ss_pred HHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHhhc-
Q 020608 164 LSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILVYE- 241 (323)
Q Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~~~- 241 (323)
.+|..+|..+... .....++|++..+++... .....+...+..+.+.. .+....+++|++|+++++..++.
T Consensus 130 ~~k~~~e~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~ 202 (298)
T d1n2sa_ 130 KTKLAGEKALQDN----CPKHLIFRTSWVYAGKGN---NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRV 202 (298)
T ss_dssp HHHHHHHHHHHHH----CSSEEEEEECSEECSSSC---CHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHhh----hcccccccccceeeccCC---ccchhhhhhhcccceeecccceeecccccchHHHHHHHHHhh
Confidence 9999999887643 345566766666544322 12222333344444433 45556679999999999887764
Q ss_pred ---CCCCCccEEEE-cCccCHHHHHHHHHHHCCCC----CCCCC---CCC----CCCCCccccccchhH-hhhCCcccCH
Q 020608 242 ---NPSACGRHLCV-EAISHYGDFVAKVAELYPEY----DIPRL---PKD----TQPGLLRTKDGAKKL-MDLGLQFIPM 305 (323)
Q Consensus 242 ---~~~~~~~~~~~-~~~~~~~e~~~~i~~~~~~~----~~~~~---~~~----~~~~~~~~~~~~~~~-~~lG~~~~~~ 305 (323)
.+...+.||++ ++.+++.++++.+.+..+.. .++.. ... ....+....+|++|+ +.+||+|+++
T Consensus 203 ~~~~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~~~ 282 (298)
T d1n2sa_ 203 ALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQW 282 (298)
T ss_dssp HHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCCBH
T ss_pred hhccccccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCCcH
Confidence 44456779975 67899999999887765211 11100 000 011123447899999 7799999999
Q ss_pred HHHHHHHHHHHHHc
Q 020608 306 DQIIKDSVESLKAK 319 (323)
Q Consensus 306 ~~~l~~~~~~~~~~ 319 (323)
+++|+++++++...
T Consensus 283 ~~gl~~~i~~~~~~ 296 (298)
T d1n2sa_ 283 ELGVKRMLTEMFTT 296 (298)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-30 Score=215.55 Aligned_cols=210 Identities=19% Similarity=0.107 Sum_probs=158.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|++|+|||||||||||++|+++|+++|. +|++++|++.+.... ....+....+|+++.+++.++++++|+
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~--------~~~~i~~~~~D~~~~~~~~~~~~~~d~ 83 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE--------AYKNVNQEVVDFEKLDDYASAFQGHDV 83 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG--------GGGGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc--------ccceeeeeeeccccccccccccccccc
Confidence 4678999999999999999999999984 899999976432210 123677888999999999999999999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCC
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEI 160 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 160 (323)
|||+++.... ..+.....++|+.++.+++++|++.++++||++||.+++ ... .+
T Consensus 84 vi~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~-~~~----------------------~~ 137 (232)
T d2bkaa1 84 GFCCLGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGAD-KSS----------------------NF 137 (232)
T ss_dssp EEECCCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCC-TTC----------------------SS
T ss_pred cccccccccc---ccchhhhhhhcccccceeeecccccCccccccCCccccc-cCc----------------------cc
Confidence 9999986422 234566788999999999999999999999999998432 221 14
Q ss_pred chHHHHHHHHHHHHHHHHhCCc-cEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHh
Q 020608 161 WYPLSKTLAEKAAWEFAKEKGL-DVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILV 239 (323)
Q Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~-~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~ 239 (323)
.|+.+|..+|..+. +.++ .++|+||+.+||+.... .....+........+. +......||++|+|++++.+
T Consensus 138 ~Y~~~K~~~E~~l~----~~~~~~~~IlRP~~i~G~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~I~~~dvA~a~i~~ 209 (232)
T d2bkaa1 138 LYLQVKGEVEAKVE----ELKFDRYSVFRPGVLLCDRQES--RPGEWLVRKFFGSLPD--SWASGHSVPVVTVVRAMLNN 209 (232)
T ss_dssp HHHHHHHHHHHHHH----TTCCSEEEEEECCEEECTTGGG--SHHHHHHHHHHCSCCT--TGGGGTEEEHHHHHHHHHHH
T ss_pred hhHHHHHHhhhccc----cccccceEEecCceeecCCCcC--cHHHHHHHHHhhccCC--cccCCCeEEHHHHHHHHHHH
Confidence 59999999998874 4566 48999999999986542 2222233333333221 22223479999999999999
Q ss_pred hcCCCCCccEEEEcC
Q 020608 240 YENPSACGRHLCVEA 254 (323)
Q Consensus 240 ~~~~~~~~~~~~~~~ 254 (323)
+.++...+.+++++.
T Consensus 210 ~~~~~~~~~~i~~~~ 224 (232)
T d2bkaa1 210 VVRPRDKQMELLENK 224 (232)
T ss_dssp HTSCCCSSEEEEEHH
T ss_pred HhcCccCCeEEEcHH
Confidence 988877777777643
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-29 Score=205.05 Aligned_cols=201 Identities=17% Similarity=0.122 Sum_probs=151.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
|.||||+||||||+||++++++|+++||+|+++.|++++.. . ....+++++.+|++|.+++.++++++|+||
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~------~--~~~~~~~~~~gD~~d~~~l~~al~~~d~vi 72 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP------S--EGPRPAHVVVGDVLQAADVDKTVAGQDAVI 72 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC------S--SSCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc------c--ccccccccccccccchhhHHHHhcCCCEEE
Confidence 45799999999999999999999999999999999764311 1 113578999999999999999999999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|++|.... ....+++..++.++++++++.++++||++||.+.++.....+. ....|
T Consensus 73 ~~~g~~~~-------~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~~~-----------------~~~~~ 128 (205)
T d1hdoa_ 73 VLLGTRND-------LSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPP-----------------RLQAV 128 (205)
T ss_dssp ECCCCTTC-------CSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCG-----------------GGHHH
T ss_pred EEeccCCc-------hhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCccccc-----------------ccccc
Confidence 99986321 1233567889999999999999999999999855543321100 01348
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
...|..+|++++ +.+++++++||+.+++........ ....+.....+|+++|+|++++.++++
T Consensus 129 ~~~~~~~e~~l~----~~~~~~tiirp~~~~~~~~~~~~~-------------~~~~~~~~~~~i~~~DvA~~~~~~l~~ 191 (205)
T d1hdoa_ 129 TDDHIRMHKVLR----ESGLKYVAVMPPHIGDQPLTGAYT-------------VTLDGRGPSRVISKHDLGHFMLRCLTT 191 (205)
T ss_dssp HHHHHHHHHHHH----HTCSEEEEECCSEEECCCCCSCCE-------------EESSSCSSCSEEEHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHH----hcCCceEEEecceecCCCCcccEE-------------EeeCCCCCCCcCCHHHHHHHHHHHhCC
Confidence 888988888764 579999999999998753321110 001233445689999999999999998
Q ss_pred CCCCcc-EEEE
Q 020608 243 PSACGR-HLCV 252 (323)
Q Consensus 243 ~~~~~~-~~~~ 252 (323)
++..|+ +..+
T Consensus 192 ~~~~g~~~~~s 202 (205)
T d1hdoa_ 192 DEYDGHSTYPS 202 (205)
T ss_dssp STTTTCEEEEE
T ss_pred CCCCCEEEecC
Confidence 875555 4444
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.95 E-value=6.3e-29 Score=213.77 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=162.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHH--HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDER--ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+.+||||||||||||++|+++|+++||+|+++.|+..... .......+. ..+++++.+|++|.+.+.+++.+++++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~v~~v~~d~~d~~~~~~~~~~~~~~ 79 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDALKQVDVV 79 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhc--cCCcEEEEeecccchhhhhhccCcchh
Confidence 4578999999999999999999999999999999765332 222332222 347899999999999999999999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
+|+++.... ..|..++.++++++++.+..++++.||.+...... ..+. .+...
T Consensus 80 ~~~~~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~----------~~~~------~~~~~ 132 (312)
T d1qyda_ 80 ISALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIM----------EHAL------QPGSI 132 (312)
T ss_dssp EECCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSC----------CCCC------SSTTH
T ss_pred hhhhhhccc-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCc----------cccc------chhhh
Confidence 999975322 23455677888899888877888888863322111 1111 11133
Q ss_pred hHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC-CC--ccCcCCCcccHHHHHHHHHH
Q 020608 162 YPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT-DT--YENFFMGSVHFKDVALAHIL 238 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~-~~--~~~~~~~~i~v~D~a~~~~~ 238 (323)
|..+|..++.. ....+++++++||+.+||+.......... .....+.. .. .++..++|+|++|+|++++.
T Consensus 133 ~~~~~~~~~~~----~~~~~~~~~i~r~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~ 205 (312)
T d1qyda_ 133 TFIDKRKVRRA----IEAASIPYTYVSSNMFAGYFAGSLAQLDG---HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIK 205 (312)
T ss_dssp HHHHHHHHHHH----HHHTTCCBCEEECCEEHHHHTTTSSCTTC---CSSCCSSEECCBTTSCSEEEEECHHHHHHHHHH
T ss_pred hhHHHHHHHHh----hcccccceEEeccceeecCCccchhhHHH---HhhhcccccccccccccccceeeHHHHHHHHHH
Confidence 66666665554 45679999999999999975432211110 00111222 22 34456679999999999999
Q ss_pred hhcCCCCCc-c-EEEE-cCccCHHHHHHHHHHHCCC
Q 020608 239 VYENPSACG-R-HLCV-EAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 239 ~~~~~~~~~-~-~~~~-~~~~~~~e~~~~i~~~~~~ 271 (323)
+++++...+ . |+++ ++.+|++|+++.+.+.++.
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 241 (312)
T d1qyda_ 206 SIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ 241 (312)
T ss_dssp HTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred HhcCccccCceEEEeCCCcCCCHHHHHHHHHHHHCC
Confidence 998876644 3 4554 5678999999999998864
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.95 E-value=1.7e-27 Score=197.63 Aligned_cols=229 Identities=22% Similarity=0.185 Sum_probs=160.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCE--EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYT--VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
.|++|||||||||||++++++|+++|++ |+++.|++++. . .+ ..+++++.+|+++.+++.++++++|+|
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~---~---~~---~~~~~~~~~d~~~~~~~~~~~~~~d~v 72 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK---E---KI---GGEADVFIGDITDADSINPAFQGIDAL 72 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHH---H---HT---TCCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHH---H---hc---cCCcEEEEeeeccccccccccccceee
Confidence 4789999999999999999999999975 56666754221 1 11 236788999999999999999999999
Q ss_pred EEcccCCccCC-------------CCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 82 FHLASPCIVDK-------------VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 82 ih~a~~~~~~~-------------~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
||+|+...... ..........+|+.++.+++..+.....+.+.+.|+.........
T Consensus 73 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~----------- 141 (252)
T d2q46a1 73 VILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP----------- 141 (252)
T ss_dssp EECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG-----------
T ss_pred EEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc-----------
Confidence 99998653211 123345567889999999999998888889999988743322210
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCccc
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVH 228 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 228 (323)
........|...+...+ .+..+.+++++++||+.+|||...... ...+...........+||
T Consensus 142 -----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ilRp~~v~g~~~~~~~---------~~~~~~~~~~~~~~~~i~ 203 (252)
T d2q46a1 142 -----LNKLGNGNILVWKRKAE----QYLADSGTPYTIIRAGGLLDKEGGVRE---------LLVGKDDELLQTDTKTVP 203 (252)
T ss_dssp -----GGGGGGCCHHHHHHHHH----HHHHHSSSCEEEEEECEEECSCTTSSC---------EEEESTTGGGGSSCCEEE
T ss_pred -----cccccccchhhhhhhhh----hhhhcccccceeecceEEECCCcchhh---------hhhccCcccccCCCCeEE
Confidence 00011123555554444 344578999999999999999753211 112222223344456999
Q ss_pred HHHHHHHHHHhhcCCCCCcc-EEEEcC----ccCHHHHHHHHHHHCC
Q 020608 229 FKDVALAHILVYENPSACGR-HLCVEA----ISHYGDFVAKVAELYP 270 (323)
Q Consensus 229 v~D~a~~~~~~~~~~~~~~~-~~~~~~----~~~~~e~~~~i~~~~~ 270 (323)
++|+|++++.++++++..|+ ||++++ ..+++|+.+++.+..+
T Consensus 204 ~~Dva~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~~ 250 (252)
T d2q46a1 204 RADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250 (252)
T ss_dssp HHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHHHHHh
Confidence 99999999999998877664 887532 3567888877766543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.2e-25 Score=185.51 Aligned_cols=216 Identities=18% Similarity=0.135 Sum_probs=158.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|++|||||++.||++++++|+++|++|++.+|+..+ ..+..+.+ +.+++.+|++|+++++++++
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~--l~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~ 73 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP--LREAAEAV-----GAHPVVMDVADPASVERGFAEALA 73 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHTT-----TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999986422 22222222 57789999999999887765
Q ss_pred ---CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|++|||||..... .+.++|...+++|+.++..+.+++. +.+...++++||. ...+.+..
T Consensus 74 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~-~~~~~~~~------- 145 (242)
T d1ulsa_ 74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR-VYLGNLGQ------- 145 (242)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG-GGGCCTTC-------
T ss_pred hcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccc-cccCCCCC-------
Confidence 689999999976432 2456789999999999999998873 3344577777775 43333211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+.+.++.++ |++++.|.||.+..|....... ..........| .+
T Consensus 146 --------------~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~---~~~~~~~~~~p----l~ 204 (242)
T d1ulsa_ 146 --------------ANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPE---KVREKAIAATP----LG 204 (242)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCH---HHHHHHHHTCT----TC
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCCH---HHHHHHHhcCC----CC
Confidence 349999999999999888774 8999999999999886543221 22233333222 11
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCccEEEEcC
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGRHLCVEA 254 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~ 254 (323)
.+..++|+|.++..++.... -.|+.+..+.
T Consensus 205 --R~~~pedia~~v~fL~S~~s~~itG~~i~vDG 236 (242)
T d1ulsa_ 205 --RAGKPLEVAYAALFLLSDESSFITGQVLFVDG 236 (242)
T ss_dssp --SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCHHHHHHHHHHHhchhhCCCCCcEEEECC
Confidence 15579999999999986433 3566444333
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.94 E-value=2.4e-26 Score=190.88 Aligned_cols=219 Identities=15% Similarity=0.117 Sum_probs=162.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||++.||++++++|+++|++|++.+|+.+ ...+..+++...+.++.++.+|++|+++++++++
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~--~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 84 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK--SCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE 84 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH--HHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999998643 2233444455555688999999999999887765
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++||+|+...... ..++|...+++|+.++..+.+++ ++.+.+++|++||.++..+.+..
T Consensus 85 ~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~-------- 156 (251)
T d2c07a1 85 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQ-------- 156 (251)
T ss_dssp CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC--------
T ss_pred cCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCC--------
Confidence 6899999999764432 34678899999999999999876 33455799999999777655432
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+.+.++.+ +|++++.|.||.+.+|...... ......+....| .+
T Consensus 157 -------------~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~---~~~~~~~~~~~p----l~- 215 (251)
T d2c07a1 157 -------------ANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKIS---EQIKKNIISNIP----AG- 215 (251)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CC---HHHHHHHHTTCT----TS-
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccC---HHHHHHHHhcCC----CC-
Confidence 34999999999999998876 4899999999999988654322 222333333222 11
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCccEEEE
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGRHLCV 252 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~ 252 (323)
.+..++|+|.++..++.... -.|+.+..
T Consensus 216 -R~~~pedvA~~v~fL~S~~s~~itG~~i~v 245 (251)
T d2c07a1 216 -RMGTPEEVANLACFLSSDKSGYINGRVFVI 245 (251)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred -CCcCHHHHHHHHHHHhCchhCCCcCcEEEE
Confidence 25689999999999986543 35664433
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.8e-26 Score=191.96 Aligned_cols=224 Identities=12% Similarity=0.086 Sum_probs=165.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|++|||||++.||++++++|+++|++|++.+|+.+. ..+..+++...+.++.++.+|++|+++++++++
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~--~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA--ANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHH--HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999986432 233344444445688999999999998887655
Q ss_pred ---CCCEEEEcccCCccC---CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 ---GCTGVFHLASPCIVD---KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++|||||..... .+.++|...+++|+.++..+.+++. +.+..++|++||.++..+.+..
T Consensus 85 ~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~~~-------- 156 (255)
T d1fmca_ 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINM-------- 156 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTC--------
T ss_pred HcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhcccccc--------
Confidence 689999999976432 2456788999999999999998763 3445689999998666554321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+.+.++.+ +|++++.|.||.+.+|....... ......+.+.-| .+
T Consensus 157 -------------~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~--~e~~~~~~~~~p----l~- 216 (255)
T d1fmca_ 157 -------------TSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVIT--PEIEQKMLQHTP----IR- 216 (255)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCC--HHHHHHHHHTCS----SC-
T ss_pred -------------ccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCC--HHHHHHHHhcCC----CC-
Confidence 34999999999999988876 48999999999998874322211 122333333222 11
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCccE-EEEcCc
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGRH-LCVEAI 255 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~~-~~~~~~ 255 (323)
.+..++|+|.++..++.... -.|+. .+.|+.
T Consensus 217 -R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 217 -RLGQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -CCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 25679999999999986433 35554 454443
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.94 E-value=1.6e-27 Score=204.06 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=159.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.|||||||||||||++|+++|+++|++|++++|+++..........+.. ...+++++.+|+.+.+.+.+.+++++.|+
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi 81 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI 81 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeee
Confidence 46899999999999999999999999999999998765333222222111 13468899999999999999999999999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
|+++.. +..++.++++++...+++++++.||........ ....+. ..+
T Consensus 82 ~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~~~-----------~~~~~~------~~~ 129 (307)
T d1qyca_ 82 STVGSL---------------QIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNV-----------HAVEPA------KSV 129 (307)
T ss_dssp ECCCGG---------------GSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSC-----------CCCTTH------HHH
T ss_pred eccccc---------------ccchhhHHHHHHHHhccccceeeeccccccccc-----------cccccc------ccc
Confidence 998652 123455677888888888899988863222111 111110 224
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC---ccCcCCCcccHHHHHHHHHHh
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT---YENFFMGSVHFKDVALAHILV 239 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~i~v~D~a~~~~~~ 239 (323)
...+...+..+ .+.+++++++||+.+||+....... ......++.... .+++.++|+|++|+|++++.+
T Consensus 130 ~~~~~~~~~~~----~~~~~~~~i~r~~~v~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~ 201 (307)
T d1qyca_ 130 FEVKAKVRRAI----EAEGIPYTYVSSNCFAGYFLRSLAQ----AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKA 201 (307)
T ss_dssp HHHHHHHHHHH----HHHTCCBEEEECCEEHHHHTTTTTC----TTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTT
T ss_pred ccccccccchh----hccCCCceecccceecCCCccchhh----hhhhhhhcccceeeecccccccCCcHHHHHHHHHHH
Confidence 45555555444 4668999999999999986432111 111122222222 355567799999999999999
Q ss_pred hcCCCCCc-c-EEEE-cCccCHHHHHHHHHHHCCC
Q 020608 240 YENPSACG-R-HLCV-EAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 240 ~~~~~~~~-~-~~~~-~~~~~~~e~~~~i~~~~~~ 271 (323)
++++...+ . |+++ ++.+|+.|+++.+.+.+|.
T Consensus 202 l~~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~ 236 (307)
T d1qyca_ 202 VDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDK 236 (307)
T ss_dssp SSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTS
T ss_pred hcChhhcCceeEEeCCCCccCHHHHHHHHHHHHCC
Confidence 99876544 3 5654 6789999999999999975
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=4.5e-27 Score=191.14 Aligned_cols=194 Identities=18% Similarity=0.186 Sum_probs=135.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh-cCCCEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV-TGCTGV 81 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~d~V 81 (323)
.|||||||||||||++|+++|+++|+ +|+++.|++... .+.+ ..+..|..++...+ ..+|+|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~------------~~~~---~~~~~d~~~~~~~~~~~~d~v 66 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------------HPRL---DNPVGPLAELLPQLDGSIDTA 66 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------------CTTE---ECCBSCHHHHGGGCCSCCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh------------cccc---cccccchhhhhhccccchhee
Confidence 38999999999999999999999997 677777754221 1123 34444544443333 368999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIW 161 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 161 (323)
||++|.... .......+.+.|+.++.+++++|++.++++++++||.+++. .. .+.
T Consensus 67 i~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~-~~----------------------~~~ 121 (212)
T d2a35a1 67 FCCLGTTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-KS----------------------SIF 121 (212)
T ss_dssp EECCCCCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-TC----------------------SSH
T ss_pred eeeeeeecc--ccccccccccchhhhhhhccccccccccccccccccccccc-cc----------------------ccc
Confidence 999986432 12334678899999999999999999999999999984432 21 145
Q ss_pred hHHHHHHHHHHHHHHHHhCCc-cEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCC-ccCcCCCcccHHHHHHHHHHh
Q 020608 162 YPLSKTLAEKAAWEFAKEKGL-DVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDT-YENFFMGSVHFKDVALAHILV 239 (323)
Q Consensus 162 Y~~sK~~~e~~~~~~~~~~~~-~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~v~D~a~~~~~~ 239 (323)
|+.+|..+|..+. +.++ +++++||+.||||...... .. .. ..+.. ...+.+.+||++|+|++++.+
T Consensus 122 y~~~K~~~E~~l~----~~~~~~~~I~Rp~~v~G~~~~~~~---~~----~~-~~~~~~~~~~~~~~i~v~DvA~ai~~~ 189 (212)
T d2a35a1 122 YNRVKGELEQALQ----EQGWPQLTIARPSLLFGPREEFRL---AE----IL-AAPIARILPGKYHGIEACDLARALWRL 189 (212)
T ss_dssp HHHHHHHHHHHHT----TSCCSEEEEEECCSEESTTSCEEG---GG----GT-TCCCC----CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhcc----ccccccceeeCCcceeCCcccccH---HH----HH-HHHHhhccCCCCcEEEHHHHHHHHHHH
Confidence 9999999998774 4566 5999999999999754211 00 11 11111 122334479999999999999
Q ss_pred hcCCCCCccEEE
Q 020608 240 YENPSACGRHLC 251 (323)
Q Consensus 240 ~~~~~~~~~~~~ 251 (323)
++++.. |.+++
T Consensus 190 ~~~~~~-g~~~~ 200 (212)
T d2a35a1 190 ALEEGK-GVRFV 200 (212)
T ss_dssp HTCCCS-EEEEE
T ss_pred HcCCCC-CCEEE
Confidence 987755 44443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.94 E-value=3e-26 Score=191.56 Aligned_cols=231 Identities=15% Similarity=0.082 Sum_probs=157.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-GADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
|++|++|||||++.||++++++|+++|++|++.+|+..+ ...+..+.+. ..+.++.++.+|++|+++++++++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~-~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAA-EIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHH-HHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHH-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999987422 1112222221 124578899999999999888765
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++|||||...... +.++|...+++|+.++..+++++ ++.+-+++|++||.++..+.+..
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~-------- 152 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANK-------- 152 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC--------
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccCCc--------
Confidence 6899999999764322 55678899999999999988886 34455699999999776655431
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHH--HHHHHHcCCCCC---
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASML--MLLRLLQGCTDT--- 218 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~--~~~~~~~g~~~~--- 218 (323)
..|+.+|...+.+.+.++.+ +|++++.|.||.+-+|........... ....-.......
T Consensus 153 -------------~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T d1x1ta1 153 -------------SAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEK 219 (260)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHH
T ss_pred -------------chhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhc
Confidence 34999999999999998877 489999999999988754321110000 000000000000
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcCccC
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPS--ACGRHLCVEAISH 257 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~~~~ 257 (323)
.|.+ .+..++|+|.++..++.... ..|+.+..+..+|
T Consensus 220 ~Pl~--R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG~t 258 (260)
T d1x1ta1 220 QPSL--QFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWT 258 (260)
T ss_dssp CTTC--CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCC--CCcCHHHHHHHHHHHhChhhCCCcCCEEEECcchh
Confidence 1111 26789999999999996433 3566444333333
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.94 E-value=1.5e-25 Score=186.99 Aligned_cols=222 Identities=18% Similarity=0.129 Sum_probs=163.3
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++++|++|||||++.||++++++|+++|++|++.+|+.+ ...+..+++...+.++.++.+|++|+++++++++
T Consensus 4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~--~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK--ELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999998643 2233444454445678899999999988877653
Q ss_pred ----CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ----GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
.+|++||+||...... +.+++...+++|+.++..+.+++ ++.+-+++|++||..+..+.+..
T Consensus 82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~------ 155 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYE------ 155 (259)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTC------
T ss_pred HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccccccc------
Confidence 4799999999764322 45678899999999999998886 34455799999999665544321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC--CchhHHHHHHHHcCCCCCc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT--LNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~--~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|...+.+.+.++.+. |++++.|.||.+..|..... .......+.++....|
T Consensus 156 ---------------~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~p--- 217 (259)
T d2ae2a_ 156 ---------------AVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA--- 217 (259)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST---
T ss_pred ---------------cchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCC---
Confidence 349999999999999998774 89999999999987642111 1111122333333322
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
.+ .+..++|+|.+++.++.... ..|+.+.
T Consensus 218 -l~--R~g~pedvA~~v~fL~S~~s~~itG~~i~ 248 (259)
T d2ae2a_ 218 -LR--RMGEPKELAAMVAFLCFPAASYVTGQIIY 248 (259)
T ss_dssp -TC--SCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred -CC--CCcCHHHHHHHHHHHhCchhCCCcCcEEE
Confidence 11 25679999999999987433 3566443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=8.4e-26 Score=186.44 Aligned_cols=216 Identities=19% Similarity=0.141 Sum_probs=158.9
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---C
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---G 77 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~ 77 (323)
|++++|++|||||++.||++++++|+++|++|++.+|+.++ ..+..+++ .++.++.+|++|.++++++++ +
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~--l~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD--LVSLAKEC----PGIEPVCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 88999999999999999999999999999999999987422 22222232 368889999999999999887 5
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh-----CCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA-----LGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
+|++|||||...... +.+.+...+++|+.++..+.+++.. .+.+++|++||.++..+.+..
T Consensus 75 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~---------- 144 (242)
T d1cyda_ 75 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNL---------- 144 (242)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTB----------
T ss_pred CeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCcc----------
Confidence 799999999764322 5667889999999999999987632 234699999998665544321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMG 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 225 (323)
..|+.+|.+.+.+.+.++.+ +|++++.|.||.+.+|....... .......+.... |. ..
T Consensus 145 -----------~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~~----pl--~R 206 (242)
T d1cyda_ 145 -----------ITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA-DPEFARKLKERH----PL--RK 206 (242)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTC-CHHHHHHHHHHS----TT--SS
T ss_pred -----------ccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcC-CHHHHHHHHhcC----CC--CC
Confidence 34999999999999998877 48999999999998764211000 011222222211 11 12
Q ss_pred cccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 226 SVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 226 ~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
+..++|+|.++..++.... ..|+.+
T Consensus 207 ~~~peeva~~v~fL~S~~s~~itG~~i 233 (242)
T d1cyda_ 207 FAEVEDVVNSILFLLSDRSASTSGGGI 233 (242)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSSEE
T ss_pred CcCHHHHHHHHHHHhCchhcCcCCceE
Confidence 5689999999999986533 355544
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=9.8e-26 Score=186.36 Aligned_cols=216 Identities=18% Similarity=0.127 Sum_probs=159.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---CC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---GC 78 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 78 (323)
.+++|++|||||++.||++++++|+++|++|++.+|+.++ ..+..+++ .++..+.+|++|.++++++++ ++
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~--l~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD--LDSLVREC----PGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH--HHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 4589999999999999999999999999999999987422 22222232 367889999999999999887 57
Q ss_pred CEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh-----hCCcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 79 TGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK-----ALGVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 79 d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
|++||+|+...... +.++|...+++|+.++..+.+++. +.+.+++|++||.++..+.+..
T Consensus 78 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~----------- 146 (244)
T d1pr9a_ 78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNH----------- 146 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTB-----------
T ss_pred eEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccch-----------
Confidence 99999999764332 557788999999999999888763 2345699999999765544321
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
..|+.+|.+.+.+.+.++.+ +|++++.|.||.+..|....... ............| .+ .+
T Consensus 147 ----------~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~-~~~~~~~~~~~~p----l~--R~ 209 (244)
T d1pr9a_ 147 ----------SVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-DPHKAKTMLNRIP----LG--KF 209 (244)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSC-SHHHHHHHHTTCT----TC--SC
T ss_pred ----------hhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhcc-ChHHHHHHHhcCC----CC--CC
Confidence 34999999999999998876 48999999999998874322111 1122233333221 11 25
Q ss_pred ccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 227 VHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
..++|+|.++..++.... ..|+.+.
T Consensus 210 ~~peevA~~v~fL~S~~a~~itG~~i~ 236 (244)
T d1pr9a_ 210 AEVEHVVNAILFLLSDRSGMTTGSTLP 236 (244)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred cCHHHHHHHHHHHhCchhCCcCCcEEE
Confidence 689999999999986533 3555443
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=3e-26 Score=188.44 Aligned_cols=206 Identities=20% Similarity=0.127 Sum_probs=152.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||++.||++++++|+++|++|++.+|+.... .++..+.+|++|+++++++++
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------------~~~~~~~~Dv~~~~~v~~~~~~~~~~ 70 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP-------------KGLFGVEVDVTDSDAVDRAFTAVEEH 70 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-------------TTSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh-------------cCceEEEEecCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999976432 356789999999999887765
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++|||||...... +.+.|...+++|+.++..+.+++ ++.+.+++|++||.++..+.+..
T Consensus 71 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~-------- 142 (237)
T d1uzma1 71 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQ-------- 142 (237)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CC--------
T ss_pred cCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCccc--------
Confidence 6899999999764322 45678899999999999888765 44556799999999776554321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+.+.++.+ +|++++.|.||.+..+...... ........+.. |.+
T Consensus 143 -------------~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~---~~~~~~~~~~~----pl~- 201 (237)
T d1uzma1 143 -------------ANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALD---ERIQQGALQFI----PAK- 201 (237)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSC---HHHHHHHGGGC----TTC-
T ss_pred -------------HHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhccC---HHHHHHHHhcC----CCC-
Confidence 34999999999999988876 4899999999999876432111 11112222211 111
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+..++|+|.++..++.... -.|+.+
T Consensus 202 -R~~~pedvA~~v~fL~S~~s~~itG~~i 229 (237)
T d1uzma1 202 -RVGTPAEVAGVVSFLASEDASYISGAVI 229 (237)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred -CCcCHHHHHHHHHHHhCchhcCCcCCeE
Confidence 25689999999999986433 356544
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.94 E-value=4.4e-25 Score=183.82 Aligned_cols=221 Identities=14% Similarity=0.074 Sum_probs=160.2
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|++|||||+++||+++++.|+++|++|++.+|+.+. ..+..+++ +.++.++.+|++|+++++++++
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~--l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~ 75 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEA--ARATAAEI---GPAACAIALDVTDQASIDRCVAELLD 75 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHH--HHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999986422 22333333 4578899999999999888765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----h-CCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----A-LGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~-~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|++||+||...... +.+.|...+++|+.++..+++++. + ....++|++||.++..+.+..
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~------ 149 (256)
T d1k2wa_ 76 RWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALV------ 149 (256)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTC------
T ss_pred HhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccccc------
Confidence 6899999999764322 456788999999999999998752 2 234699999999776654421
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch--------hHHHHHHHHc
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA--------SMLMLLRLLQ 213 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~--------~~~~~~~~~~ 213 (323)
..|+.+|.+.+.+.+.++.+. |++++.|.||.+-+|........ .......+..
T Consensus 150 ---------------~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
T d1k2wa_ 150 ---------------GVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGA 214 (256)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred ---------------cchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHh
Confidence 349999999999999888764 89999999999988753210000 0000111111
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccE-EEEc
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRH-LCVE 253 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~-~~~~ 253 (323)
.- |. ..+..++|+|.+++.++.... -.|+. .+.+
T Consensus 215 ~~----Pl--gR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDG 251 (256)
T d1k2wa_ 215 AV----PF--GRMGRAEDLTGMAIFLATPEADYIVAQTYNVDG 251 (256)
T ss_dssp HS----TT--SSCBCHHHHHHHHHHTTSGGGTTCCSCEEEEST
T ss_pred cC----CC--CCCcCHHHHHHHHHHHhCchhCCccCceEEECc
Confidence 11 11 125689999999999986433 34553 4443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.94 E-value=4e-25 Score=182.98 Aligned_cols=217 Identities=14% Similarity=0.091 Sum_probs=154.3
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.|++|++|||||++.||+++++.|+++|++|++.+|++.+ ......+. .+.++.++.+|++|+++++++++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~-~~~~~~~~---~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP-EAEAAIRN---LGRRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH-HHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH-HHHHHHHH---cCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999997643 22222222 34578999999999999887764
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++|||||...... +.+.|...+++|+.++..+.+++ ++.+-+++|++||.++..+.+..
T Consensus 78 ~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~-------- 149 (247)
T d2ew8a1 78 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAY-------- 149 (247)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSC--------
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCccc--------
Confidence 6899999999864322 55788999999999999999987 33455799999999766554321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+.+.++.+. |++++.|.||.+.+|........ ...... .... .+.+
T Consensus 150 -------------~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~--~~~~~~-~~~~--~~l~- 210 (247)
T d2ew8a1 150 -------------THYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALS--AMFDVL-PNML--QAIP- 210 (247)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------CTT--SSSC-
T ss_pred -------------ccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccc--hhHHHH-HHHh--ccCC-
Confidence 349999999999999888764 89999999999988764321110 001111 1110 1111
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+..++|+|.+++.++.... ..|+.+
T Consensus 211 -r~~~pedvA~~v~fL~S~~s~~itG~~i 238 (247)
T d2ew8a1 211 -RLQVPLDLTGAAAFLASDDASFITGQTL 238 (247)
T ss_dssp -SCCCTHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred -CCCCHHHHHHHHHHHhCchhcCCcCCeE
Confidence 25678999999999986433 345544
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=5.6e-25 Score=181.35 Aligned_cols=211 Identities=18% Similarity=0.126 Sum_probs=158.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||++++++|+++|++|++.+|++++ ..+..+++. .+..++.+|++|+++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~--~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEE--GKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHhh---CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999997432 223333332 368889999999999887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
.+|++|||||...... +.+.|.+.+++|+.++..+.+++ ++.+-+++|++||..+..+.+..
T Consensus 79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~--------- 149 (244)
T d1nffa_ 79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVAC--------- 149 (244)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTB---------
T ss_pred CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccccc---------
Confidence 6899999999764322 45678899999999999999876 33344699999999776554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFM 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (323)
..|+.+|...+.+.+.++.++ |++++.|.||.+.+|...... ......+. .
T Consensus 150 ------------~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~------------~~~~~~pl--~ 203 (244)
T d1nffa_ 150 ------------HGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVP------------EDIFQTAL--G 203 (244)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSC------------TTCSCCSS--S
T ss_pred ------------cchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhh------------HHHHhccc--c
Confidence 349999999999999988774 899999999999887532110 00000111 1
Q ss_pred CcccHHHHHHHHHHhhcCCC--CCccE-EEEc
Q 020608 225 GSVHFKDVALAHILVYENPS--ACGRH-LCVE 253 (323)
Q Consensus 225 ~~i~v~D~a~~~~~~~~~~~--~~~~~-~~~~ 253 (323)
.+..++|+|.++..++.... ..|+. .+.+
T Consensus 204 R~~~p~diA~~v~fL~s~~s~~itG~~i~vDG 235 (244)
T d1nffa_ 204 RAAEPVEVSNLVVYLASDESSYSTGAEFVVDG 235 (244)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCHHHHHHHHHHHhChhhCCCcCCEEEECC
Confidence 26789999999999986432 35654 4443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=7.2e-26 Score=186.95 Aligned_cols=214 Identities=16% Similarity=0.138 Sum_probs=159.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|+++||||++.||+++++.|+++|++|++.+|+.+..+ +..+++ +.+..++.+|++|+++++++++
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~--~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQ--AISDYL---GANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH--HHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH--HHHHHh---CCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 368999999999999999999999999999999998743222 222333 2367889999999998887765
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++||+|+...... ..+.|...+++|+.++..+++++ ++.+-+++|++||.++..+.+..
T Consensus 76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~-------- 147 (243)
T d1q7ba_ 76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQ-------- 147 (243)
T ss_dssp TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC--------
T ss_pred cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCC--------
Confidence 6899999998764432 45678899999999999999987 33445799999999777655421
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+.+.++.+ +|++++.|.||.+-.|....... .....+....| .+
T Consensus 148 -------------~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~---~~~~~~~~~~p----l~- 206 (243)
T d1q7ba_ 148 -------------ANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSD---DQRAGILAQVP----AG- 206 (243)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCH---HHHHHHHTTCT----TS-
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhhh---hHHHHHHhcCC----CC-
Confidence 34999999999999998877 48999999999998764322111 11222222221 11
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
.+..++|+|.++.+++.... ..|+.+
T Consensus 207 -R~~~pedvA~~v~fL~S~~s~~itGq~i 234 (243)
T d1q7ba_ 207 -RLGGAQEIANAVAFLASDEAAYITGETL 234 (243)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred -CCCCHHHHHHHHHHHhCchhcCCcCCeE
Confidence 25689999999999996433 355544
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.94 E-value=5.7e-25 Score=183.14 Aligned_cols=226 Identities=17% Similarity=0.137 Sum_probs=162.2
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||++.||++++++|+++|++|++.+|++.+ ..+..+++...+..+.++.+|+++.++++++++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~--l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKE--LDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999997532 233344455555678899999999998877654
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
.+|+++|+|+...... +.++|...+++|+.++..+.+++. +.+.+++|++||..+..+.+..
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~~~------- 153 (258)
T d1ae1a_ 81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSV------- 153 (258)
T ss_dssp TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTC-------
T ss_pred hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccccc-------
Confidence 3799999999764322 456789999999999999988763 3355799999999775554321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch---hHHHHHHHHcCCCCCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA---SMLMLLRLLQGCTDTY 219 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~---~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+.+.++.++ |+++.+|.||.+.+|........ ....+..+....|
T Consensus 154 --------------~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p--- 216 (258)
T d1ae1a_ 154 --------------SLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP--- 216 (258)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST---
T ss_pred --------------hhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCC---
Confidence 349999999999999998774 89999999999998864322111 1122333332221
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcCcc
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGRHLCVEAIS 256 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~~~ 256 (323)
.+ .+..++|+|.++..++.... -.|+.+..+..+
T Consensus 217 -lg--R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~ 252 (258)
T d1ae1a_ 217 -MG--RAGKPQEVSALIAFLCFPAASYITGQIIWADGGF 252 (258)
T ss_dssp -TC--SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -CC--CCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCCe
Confidence 11 16789999999999996433 356655444433
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.93 E-value=3.2e-25 Score=184.90 Aligned_cols=220 Identities=16% Similarity=0.110 Sum_probs=160.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||++++++|+++|++|++.+|+..+ ......+.+...+.++.++.+|++|+++++++++
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~-~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKED-EANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH-HHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHH-HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999997532 2223333444445678899999999999887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCC-cCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALG-VKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++|||||...... +.++|...+++|+.++..+.+++ ++.+ ...+|++||.++..+.+..
T Consensus 84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~-------- 155 (261)
T d1geea_ 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLF-------- 155 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTC--------
T ss_pred CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCccc--------
Confidence 6899999999764322 55678899999999999998886 3344 3469999998665544321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+.+.++.++ |+++++|.||.+..|...... ........+.+.. |.+
T Consensus 156 -------------~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~-~~~~~~~~~~~~~----pl~- 216 (261)
T d1geea_ 156 -------------VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKF-ADPEQRADVESMI----PMG- 216 (261)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHH-HSHHHHHHHHTTC----TTS-
T ss_pred -------------cccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhc-CCHHHHHHHHhcC----CCC-
Confidence 349999999999999888774 899999999999887532100 0111122222221 111
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
.+..++|+|+++..++.... ..|+.+.
T Consensus 217 -R~~~pediA~~v~fL~S~~s~~itG~~i~ 245 (261)
T d1geea_ 217 -YIGEPEEIAAVAAWLASSEASYVTGITLF 245 (261)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred -CCCCHHHHHHHHHHHhCchhcCCcCCeEE
Confidence 15689999999999986433 3566443
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=3.6e-25 Score=183.18 Aligned_cols=213 Identities=16% Similarity=0.089 Sum_probs=155.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||++++++|+++|++|++.+|+.+..+ ..+.+ +..++.+|++|.++++++++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~---~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE---VAEAI-----GGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH---HHHHH-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHHc-----CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999864332 22222 45678999999998887665
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|++|||||...... +.++|...+++|+.++.++.+++ ++.+-+++|++||.++..+.+..
T Consensus 75 G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~~~--------- 145 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQEN--------- 145 (248)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTB---------
T ss_pred CCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccccccccc---------
Confidence 6899999999764322 45678899999999999999987 34455799999999776655421
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC---CchhHHHHHHHHcCCCCCccC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT---LNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|...+.+.+.++.++ |++++.|.||.+-+|..... ..........+.... |.
T Consensus 146 ------------~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~----pl 209 (248)
T d2d1ya1 146 ------------AAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLH----AL 209 (248)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTS----TT
T ss_pred ------------chhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcC----CC
Confidence 349999999999999888774 89999999999987632100 000000111111111 11
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
..+..++|+|.++..++.... ..|+.+
T Consensus 210 --~R~~~pedia~~v~fL~S~~s~~itG~~i 238 (248)
T d2d1ya1 210 --RRLGKPEEVAEAVLFLASEKASFITGAIL 238 (248)
T ss_dssp --SSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred --CCCcCHHHHHHHHHHHhCchhcCCCCcEE
Confidence 125689999999999986433 356644
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.93 E-value=2.4e-25 Score=185.41 Aligned_cols=221 Identities=15% Similarity=0.115 Sum_probs=158.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||+++++.|+++|++|++.+|+.+..+...........+.++.++.+|++|+++++++++
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999753322221111112234578899999999999887765
Q ss_pred -CCCEEEEcccCCcc-C----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIV-D----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++|||||.... . .+.+.|...+++|+.++..+.+++ ++.+-+++|++||.++..+.+..
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~-------- 153 (258)
T d1iy8a_ 82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQ-------- 153 (258)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSB--------
T ss_pred CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCCCc--------
Confidence 68999999996422 1 245678899999999999999886 33345799999999776654421
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC-----CchhHHHHHHHHcCCCCC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT-----LNASMLMLLRLLQGCTDT 218 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~-----~~~~~~~~~~~~~g~~~~ 218 (323)
..|+.+|...+.+.+.++.+. |++++.|.||.+.+|..... ..........+....
T Consensus 154 -------------~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--- 217 (258)
T d1iy8a_ 154 -------------SGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN--- 217 (258)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC---
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcC---
Confidence 349999999999999888764 89999999999987642100 000111222222221
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
|.+ .+..++|+|.+++.++.... ..|+.+
T Consensus 218 -pl~--R~~~p~dvA~~v~fL~S~~s~~itG~~i 248 (258)
T d1iy8a_ 218 -PSK--RYGEAPEIAAVVAFLLSDDASYVNATVV 248 (258)
T ss_dssp -TTC--SCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred -CCC--CCcCHHHHHHHHHHHhCchhcCCcCceE
Confidence 111 25689999999999986432 355544
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93 E-value=1.9e-25 Score=186.23 Aligned_cols=219 Identities=15% Similarity=0.119 Sum_probs=145.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+|++|++|||||++.||++++++|+++|++|++.+|+.. ...+..+++.....++.++.+|+++.++++++++
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~--~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY--ELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998743 2233344444445678999999999988776553
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
.+|++|||||...... +.+++...+++|+.++..+++++ ++.+.+++|++||..+..+.+..
T Consensus 83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~------- 155 (259)
T d1xq1a_ 83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVG------- 155 (259)
T ss_dssp HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------C-------
T ss_pred hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccccccccc-------
Confidence 4899999999764322 45678899999999999999886 33455799999999666544321
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|.+.+.+.+.++.+. |+++++|.||.+.+|....... ......+... .|.+
T Consensus 156 --------------~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~--~~~~~~~~~~----~pl~ 215 (259)
T d1xq1a_ 156 --------------SIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYD--DEFKKVVISR----KPLG 215 (259)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------------------
T ss_pred --------------ccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhch--HHHHHHHHhC----CCCC
Confidence 349999999999999888774 8999999999998876432111 0111111111 1111
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
.+..++|+|.++..++.... ..|+.+.
T Consensus 216 --R~~~pedvA~~v~fL~S~~s~~iTG~~i~ 244 (259)
T d1xq1a_ 216 --RFGEPEEVSSLVAFLCMPAASYITGQTIC 244 (259)
T ss_dssp ----CCGGGGHHHHHHHTSGGGTTCCSCEEE
T ss_pred --CCcCHHHHHHHHHHHhCchhcCCcCcEEE
Confidence 15578999999999986432 3555443
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.93 E-value=8.5e-25 Score=181.68 Aligned_cols=219 Identities=15% Similarity=0.089 Sum_probs=159.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC-CHhHHHHHhc---
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL-DYDAIAAAVT--- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~--- 76 (323)
|++++|+||||||+++||.+++++|+++|++|+++.|+.++......+... ....++.++.+|++ +.++++++++
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAI-NPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHH-CTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhh-CCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999887665443333222 22457889999998 5555665543
Q ss_pred ----CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhh----C---CcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ----GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKA----L---GVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~---~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|++|||||.. ..+.+++.+++|+.|+.++..++.. . ..+++|++||..+..+.+..
T Consensus 80 ~~~g~iDilvnnAG~~----~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~~------- 148 (254)
T d1sbya1 80 DQLKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQV------- 148 (254)
T ss_dssp HHHSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTS-------
T ss_pred HHcCCCCEEEeCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCCC-------
Confidence 789999999974 5678999999999999999998732 1 23689999999777665432
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch--hHHHHHHHHcCCCCCcc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA--SMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~--~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+...+.+.++.++ |++++.|.||.|.+|..+..... ....+.....+
T Consensus 149 --------------~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------ 208 (254)
T d1sbya1 149 --------------PVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS------ 208 (254)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT------
T ss_pred --------------HHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhcccc------
Confidence 349999999999988888764 89999999999988732110000 00011111111
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCCCCccEEEEcC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPSACGRHLCVEA 254 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~ 254 (323)
.....++++|++++.+++....+..+.+.+.
T Consensus 209 ---~~~~~~e~va~~~~~~~~~~~tG~vi~vdgG 239 (254)
T d1sbya1 209 ---HPTQTSEQCGQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp ---SCCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred ---CCCCCHHHHHHHHHHhhhCCCCCCEEEECCC
Confidence 1234689999999998876654434666554
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.93 E-value=2.9e-24 Score=180.18 Aligned_cols=222 Identities=18% Similarity=0.163 Sum_probs=160.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||++++++|+++|++|++.+|+.+. ..+..+++.. ...+.++.+|++|+++++++++
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~--~~~~~~~l~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDH--GQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHhcC-CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999999986432 2233334433 3467889999999999888765
Q ss_pred -CCCEEEEcccCCccC------CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 -GCTGVFHLASPCIVD------KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
++|++||+||..... .+.+.+...+++|+.++..+.+++ ++.+..++|++||.++..+....
T Consensus 81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~~------- 153 (268)
T d2bgka1 81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGV------- 153 (268)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTS-------
T ss_pred CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccccccc-------
Confidence 689999999965322 133568889999999999999886 33455699999998665543211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
...|+.+|.+.+.+.+.++.+ +|++++.|.||.+.+|...................... +.
T Consensus 154 -------------~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~--~~- 217 (268)
T d2bgka1 154 -------------SHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN--LK- 217 (268)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS--SC-
T ss_pred -------------ccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccc--cC-
Confidence 024999999999999988877 48999999999999987543322222222222111111 11
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
..+..++|+|.+++.++.... -.|+.+.
T Consensus 218 -gr~~~pedvA~~v~fL~S~~s~~itGq~i~ 247 (268)
T d2bgka1 218 -GTLLRAEDVADAVAYLAGDESKYVSGLNLV 247 (268)
T ss_dssp -SCCCCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred -CCCcCHHHHHHHHHHHhChhhCCccCceEE
Confidence 125689999999999996433 3566443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.93 E-value=1.1e-24 Score=180.60 Aligned_cols=215 Identities=17% Similarity=0.081 Sum_probs=157.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||++.||++++++|+++|++|++.+|+.+ ...+..+++ +.++.++.+|++|+++++++++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~--~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE--EGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHh---CCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998642 222333333 3478899999999999887765
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++|||||...... ..+.+...+++|+.++..+.+++. +.+.+++|++||.++..+.+..
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~~~-------- 148 (254)
T d1hdca_ 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALT-------- 148 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC--------
T ss_pred cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccccch--------
Confidence 6899999999764322 456788999999999999999873 3445799999999776655421
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC-CCccCc
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT-DTYENF 222 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~-~~~~~~ 222 (323)
..|+.+|.+.+.+.+.++.++ |+++++|.||.+..|.. ........ ......
T Consensus 149 -------------~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~-----------~~~~~~~~~~~~~~~ 204 (254)
T d1hdca_ 149 -------------SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT-----------AETGIRQGEGNYPNT 204 (254)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-----------HHHTCCCSTTSCTTS
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCccc-----------hhcCHHHHHHHHhCC
Confidence 349999999999999988764 89999999999976531 11111110 001111
Q ss_pred CCC-c-ccHHHHHHHHHHhhcCCC--CCcc-EEEEc
Q 020608 223 FMG-S-VHFKDVALAHILVYENPS--ACGR-HLCVE 253 (323)
Q Consensus 223 ~~~-~-i~v~D~a~~~~~~~~~~~--~~~~-~~~~~ 253 (323)
.+. + ..++|+|.+++.++.... -.|+ +.+.+
T Consensus 205 pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDG 240 (254)
T d1hdca_ 205 PMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDG 240 (254)
T ss_dssp TTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCC
Confidence 111 2 358999999999986433 3555 44543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.93 E-value=1e-24 Score=182.03 Aligned_cols=212 Identities=17% Similarity=0.124 Sum_probs=158.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||+++++.|+++|++|++.+|+.+. ..+..+.+...+.++.++.+|++|+++++++++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~--l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREA--LEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999986432 223344455556688999999999998887765
Q ss_pred -CCCEEEEcccCCcc-C----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIV-D----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++||+||.... . .+.+.|...+++|+.++..+.+++. +.+-+++|++||.++..+.+..
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~-------- 152 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNM-------- 152 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTB--------
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCcch--------
Confidence 68999999996522 1 2556788999999999999999863 3345699999999777655431
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCC-------------CCCchhHHHHHH
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIP-------------PTLNASMLMLLR 210 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~-------------~~~~~~~~~~~~ 210 (323)
..|+.+|.+.+.+.+.++.+. |++++.|.||.|-.|... ............
T Consensus 153 -------------~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T d1zema1 153 -------------AAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQ 219 (260)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHH
Confidence 349999999999999988774 899999999999886421 001111112222
Q ss_pred HHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 211 LLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 211 ~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+....| . ..+..++|+|.++..++...
T Consensus 220 ~~~~~P----l--~R~g~pedvA~~v~fL~S~~ 246 (260)
T d1zema1 220 MIGSVP----M--RRYGDINEIPGVVAFLLGDD 246 (260)
T ss_dssp HHHTST----T--SSCBCGGGSHHHHHHHHSGG
T ss_pred HHhcCC----C--CCCcCHHHHHHHHHHHhCch
Confidence 222221 1 12567899999999999743
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.93 E-value=1.4e-24 Score=180.06 Aligned_cols=220 Identities=19% Similarity=0.183 Sum_probs=158.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||+++++.|+++|++|++.+|+.+.. .+..+.+.. ..++.++.+|++|+++++++++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVG--EKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999864322 222333332 4578999999999998887765
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCc-CEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGV-KRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++||||+...... +.++|...+++|+.++..+.+++ ++.+. .++|++||.++..+.+..
T Consensus 81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~-------- 152 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSL-------- 152 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTC--------
T ss_pred CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCc--------
Confidence 6899999999764322 45667889999999999999986 33443 489999999666544321
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh-----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|...+.+.+.++.+ +|++++.|.||.+.+|........ ...... ....|.
T Consensus 153 -------------~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~--~~~~~~----~~~~pl 213 (251)
T d1zk4a1 153 -------------GAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGA--EEAMSQ----RTKTPM 213 (251)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTH--HHHHTS----TTTCTT
T ss_pred -------------hhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCH--HHHHHH----HhCCCC
Confidence 34999999999988887654 489999999999987743221111 111111 111122
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcC
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHLCVEA 254 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~ 254 (323)
+ .+..++|+|.++..++.... ..|+.+..+.
T Consensus 214 ~--R~~~pedvA~~v~fL~S~~s~~itG~~i~vDG 246 (251)
T d1zk4a1 214 G--HIGEPNDIAYICVYLASNESKFATGSEFVVDG 246 (251)
T ss_dssp S--SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred C--CCcCHHHHHHHHHHHhCchhCCCcCcEEEECc
Confidence 2 26689999999999986433 3565443333
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=5.9e-25 Score=182.32 Aligned_cols=222 Identities=19% Similarity=0.173 Sum_probs=160.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-GADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
++++|++|||||+++||++++++|+++|++|++.+|+.++.. +..+++. ..+.++.++.+|++|+++++++++
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~--~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS--EAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999753322 2222221 224578899999999998887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEeccccccc-CCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSIT-PSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~-~~~~~~~~~~~ 144 (323)
++|++|||||...... +.+.|...+++|+.++..+.+++ ++.+-+++|++||..+.. +...
T Consensus 80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~------- 152 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPN------- 152 (251)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSS-------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccCcc-------
Confidence 6899999999754322 55678899999999999999986 334556999999974432 2221
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+.+.++.+. |++++.|.||.+-+|...... ........+.+..|.
T Consensus 153 --------------~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~-~~~~~~~~~~~~~pl---- 213 (251)
T d1vl8a_ 153 --------------ISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVF-SDPEKLDYMLKRIPL---- 213 (251)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHH-TCHHHHHHHHHTCTT----
T ss_pred --------------ccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhcc-CCHHHHHHHHhcCCC----
Confidence 1349999999999999988764 899999999999887643110 011223333332221
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEEEEc
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHLCVE 253 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~ 253 (323)
+ .+..++|+|++++.++.... ..|+.+..+
T Consensus 214 ~--R~~~pedvA~~v~fL~S~~a~~itG~~i~vD 245 (251)
T d1vl8a_ 214 G--RTGVPEDLKGVAVFLASEEAKYVTGQIIFVD 245 (251)
T ss_dssp S--SCBCGGGGHHHHHHHHSGGGTTCCSCEEEES
T ss_pred C--CCCCHHHHHHHHHHHhCchhCCCcCcEEEeC
Confidence 1 14578999999999986433 356644333
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.93 E-value=2.2e-24 Score=179.86 Aligned_cols=217 Identities=18% Similarity=0.100 Sum_probs=159.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------C
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------G 77 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 77 (323)
+|.+|||||++.||++++++|+++|++|++.+|+.+. ..+..+++...+.++.++.+|++|+++++++++ +
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~--l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEG--LRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 5788999999999999999999999999999997432 223344444445688999999999999887765 6
Q ss_pred CCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh------CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 78 CTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA------LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~------~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
+|++|||||...... +.+.|...+++|+.++..+++++.. .+..++|++||..+..+.+..
T Consensus 80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~--------- 150 (257)
T d2rhca1 80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHA--------- 150 (257)
T ss_dssp CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTC---------
T ss_pred CCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccc---------
Confidence 899999999764322 5567889999999999999998743 244699999999776655432
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC--------CchhHHHHHHHHcCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT--------LNASMLMLLRLLQGCT 216 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~--------~~~~~~~~~~~~~g~~ 216 (323)
..|+.+|...+.+.+.++.+. |++++.|.||.+-+|..... ..........+....
T Consensus 151 ------------~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~- 217 (257)
T d2rhca1 151 ------------APYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARV- 217 (257)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS-
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcC-
Confidence 349999999999999998884 79999999999987642100 000111222222221
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
|.+ .+..++|+|.+++.++.... -.|+.+
T Consensus 218 ---Plg--R~~~pedia~~v~fL~S~~s~~itG~~i 248 (257)
T d2rhca1 218 ---PIG--RYVQPSEVAEMVAYLIGPGAAAVTAQAL 248 (257)
T ss_dssp ---TTS--SCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred ---CCC--CCcCHHHHHHHHHHHhCchhcCCcCceE
Confidence 111 25689999999999996432 355544
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.2e-24 Score=180.05 Aligned_cols=214 Identities=18% Similarity=0.140 Sum_probs=155.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||+++++.|+++|++|++.+|+.+.. .+..++ ..+..++.+|++|.++++++++
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~--~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGG--RALEQE----LPGAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHH----CTTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHh----cCCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999864221 122222 2468899999999999888765
Q ss_pred -CCCEEEEcccCCccC-----CCCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCccccC
Q 020608 77 -GCTGVFHLASPCIVD-----KVEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKVKDE 146 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e 146 (323)
++|++||+||..... .+.+.|...+++|+.++.++++++. +.+ +++|++||.++..+.+..
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~Ii~isS~~~~~~~~~~-------- 148 (250)
T d1ydea1 78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQAQA-------- 148 (250)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHCCTTC--------
T ss_pred CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-CCCcccccccccccccCc--------
Confidence 689999999965321 1445688999999999999999873 333 699999999776655421
Q ss_pred CCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCC---CCchhHHHHHHHHcCCCCCcc
Q 020608 147 DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPP---TLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~---~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|...+.+.+.++.+. |++++.|.||.|..|.... ........+.......|
T Consensus 149 -------------~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p---- 211 (250)
T d1ydea1 149 -------------VPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQP---- 211 (250)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTST----
T ss_pred -------------chhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCC----
Confidence 349999999999999988774 8999999999998763210 00111122223222221
Q ss_pred CcCCCcccHHHHHHHHHHhhcC-CCCCccEE
Q 020608 221 NFFMGSVHFKDVALAHILVYEN-PSACGRHL 250 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~-~~~~~~~~ 250 (323)
- ..+..++|+|.+++.++.. ..-.|+.+
T Consensus 212 l--~R~g~p~eva~~v~fL~Sda~~itG~~i 240 (250)
T d1ydea1 212 L--GRMGQPAEVGAAAVFLASEANFCTGIEL 240 (250)
T ss_dssp T--SSCBCHHHHHHHHHHHHHHCTTCCSCEE
T ss_pred C--CCCCCHHHHHHHHHHHhCccCCCcCCeE
Confidence 1 1256899999999998853 22245533
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.92 E-value=4.4e-25 Score=182.30 Aligned_cols=218 Identities=17% Similarity=0.099 Sum_probs=157.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 78 (323)
+.||||||++.||++++++|+++|++|++..++. .....+..+++...+.++.++.+|++|+++++++++ ++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~-~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARS-AKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999998876543 222222333333335578899999999999887765 68
Q ss_pred CEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 79 TGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 79 d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
|++||||+..... .+.+.|+..+++|+.++..+.+++ ++.+-+++|++||.++..+.+..
T Consensus 81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~------------ 148 (244)
T d1edoa_ 81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQ------------ 148 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC------------
T ss_pred CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCCCC------------
Confidence 9999999976432 255678899999999999999887 33455799999999777665432
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSV 227 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i 227 (323)
..|+.+|.+.+.+.+.++.++ |+++++|.||.+-+|...... ......+....| .+ .+.
T Consensus 149 ---------~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~---~~~~~~~~~~~p----l~--R~~ 210 (244)
T d1edoa_ 149 ---------ANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLG---EDMEKKILGTIP----LG--RTG 210 (244)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC---HHHHHHHHTSCT----TC--SCB
T ss_pred ---------HHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHhh---HHHHHHHHhcCC----CC--CCc
Confidence 349999999999999988774 899999999999877432211 122223222221 11 256
Q ss_pred cHHHHHHHHHHhhcCCC---CCccEEEEcC
Q 020608 228 HFKDVALAHILVYENPS---ACGRHLCVEA 254 (323)
Q Consensus 228 ~v~D~a~~~~~~~~~~~---~~~~~~~~~~ 254 (323)
.++|+|.++..++..+. -.|+.+..++
T Consensus 211 ~p~dvA~~v~fLa~S~~a~~itG~~i~vdG 240 (244)
T d1edoa_ 211 QPENVAGLVEFLALSPAASYITGQAFTIDG 240 (244)
T ss_dssp CHHHHHHHHHHHHHCSGGGGCCSCEEEEST
T ss_pred CHHHHHHHHHHHHCCchhcCCcCCeEEeCC
Confidence 89999999999863322 2455443333
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.92 E-value=3.5e-24 Score=178.32 Aligned_cols=216 Identities=20% Similarity=0.165 Sum_probs=154.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 78 (323)
|.+|||||++.||++++++|+++|++|++.+|+.++. .+..+++...+.++.++.+|++|+++++++++ ++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l--~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATA--KAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 79 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 4569999999999999999999999999999975332 23333444445678999999999999887765 68
Q ss_pred CEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCC-cCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 79 TGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALG-VKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 79 d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
|++|||||...... +.+.|...+++|+.++.++++++. +.+ ..++|++||.++..+.+..
T Consensus 80 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~----------- 148 (255)
T d1gega_ 80 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPEL----------- 148 (255)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTB-----------
T ss_pred cEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCccc-----------
Confidence 99999999764322 456788999999999999998863 223 4589999998666554321
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch--------hHHHHHHHHcCCCCC
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA--------SMLMLLRLLQGCTDT 218 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~--------~~~~~~~~~~g~~~~ 218 (323)
..|+.+|...+.+.+.++.+. |++++.|.||.+-+|........ .......+.+..
T Consensus 149 ----------~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 215 (255)
T d1gega_ 149 ----------AVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI--- 215 (255)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTC---
T ss_pred ----------ccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcC---
Confidence 349999999999999988764 89999999999977642100000 000011111111
Q ss_pred ccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 219 YENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 219 ~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
|.+ .+..++|+|.++..++.... ..|+.+
T Consensus 216 -pl~--R~~~peevA~~v~fL~S~~a~~itG~~i 246 (255)
T d1gega_ 216 -TLG--RLSEPEDVAACVSYLASPDSDYMTGQSL 246 (255)
T ss_dssp -TTC--SCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred -CCC--CCcCHHHHHHHHHHHhCchhCCccCcEE
Confidence 111 26689999999999996433 345544
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.1e-24 Score=179.50 Aligned_cols=201 Identities=14% Similarity=0.071 Sum_probs=154.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
+++.+|+++||||++.||++++++|+++|++|++.+|+.++.. +..+++...+.++.++.+|++|.++++++++
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~--~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE--ETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999753322 3333344446689999999999999887765
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCcccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKD 145 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~ 145 (323)
.+|++|||||...... ..+.+.+++++|+.++.++++++ ++.+.+++|++||.++..+.+..
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~~------- 153 (244)
T d1yb1a_ 81 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFL------- 153 (244)
T ss_dssp HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHH-------
T ss_pred HcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCCc-------
Confidence 6899999999864433 33457789999999999999886 45566799999999665543211
Q ss_pred CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh------CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 146 EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE------KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 146 e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~------~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.||.+.+.+.+.++.+ .|++++.+.||.|-.+...... .. .
T Consensus 154 --------------~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~-------~~--~------ 204 (244)
T d1yb1a_ 154 --------------LAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS-------TS--L------ 204 (244)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTH-------HH--H------
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcC-------cc--c------
Confidence 34999999999998888765 3799999999999887543210 01 0
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
...+.++|+|+.++..+...
T Consensus 205 ----~~~~~pe~va~~i~~~~~~~ 224 (244)
T d1yb1a_ 205 ----GPTLEPEEVVNRLMHGILTE 224 (244)
T ss_dssp ----CCCCCHHHHHHHHHHHHHTT
T ss_pred ----cCCCCHHHHHHHHHHHHhcC
Confidence 12346899999999887754
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.8e-24 Score=176.87 Aligned_cols=213 Identities=17% Similarity=0.101 Sum_probs=153.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
.+|++|||||++.||+++++.|+++|++|++.+|+.++.. +...++.. .+.++.++.+|++|.++++++++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGV--QCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999753322 22233322 23478899999999999887765
Q ss_pred --CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhh----C--C-cCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKA----L--G-VKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~--~-~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|++||+|+.. ...++.+.+++|+.++.++..++.. . + ..++|++||.++..+.+..
T Consensus 80 ~G~iDilVnnAg~~----~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~--------- 146 (254)
T d2gdza1 80 FGRLDILVNNAGVN----NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQ--------- 146 (254)
T ss_dssp HSCCCEEEECCCCC----CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTC---------
T ss_pred cCCcCeeccccccc----ccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCCc---------
Confidence 689999999984 4567889999999999888887632 2 1 2589999999776655432
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHH--HHH---hCCccEEEEcCCCccCCCCCCCCc---------hhHHHHHHHHc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWE--FAK---EKGLDVVVVNPGTVMGPVIPPTLN---------ASMLMLLRLLQ 213 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~--~~~---~~~~~~~~~Rp~~v~G~~~~~~~~---------~~~~~~~~~~~ 213 (323)
..|+.+|.+.+.+.+. ++. .+|++++.|.||.+-+|....... ....+......
T Consensus 147 ------------~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 214 (254)
T d2gdza1 147 ------------PVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKY 214 (254)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHH
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCC
Confidence 3499999999988774 333 358999999999998764211000 00011111111
Q ss_pred CCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCccE-EEEc
Q 020608 214 GCTDTYENFFMGSVHFKDVALAHILVYENPSACGRH-LCVE 253 (323)
Q Consensus 214 g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~-~~~~ 253 (323)
+ .+..++|+|++++.++.+....|+. .+.+
T Consensus 215 ~----------r~~~pedvA~~v~fL~s~~~itG~~i~VdG 245 (254)
T d2gdza1 215 Y----------GILDPPLIANGLITLIEDDALNGAIMKITT 245 (254)
T ss_dssp H----------CCBCHHHHHHHHHHHHHCTTCSSCEEEEET
T ss_pred C----------CCcCHHHHHHHHHHHHcCCCCCCCEEEECC
Confidence 1 1457899999999999876666664 4543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.92 E-value=6.3e-24 Score=174.88 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=152.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCE-------EEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYT-------VHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-- 76 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (323)
+.||||||++.||++++++|+++|++ |++.+|+..+ ..+...++...+.++.++.+|++|.++++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~--l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~ 79 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAAD--LEKISLECRAEGALTDTITADISDMADVRRLTTHI 79 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHH--HHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35899999999999999999999987 7888886432 223334445556678899999999998887765
Q ss_pred -----CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 -----GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 -----~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|++|||||...... +.+++...+++|+.++..+.+++. +.+-+++|++||.++..+.+..
T Consensus 80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~----- 154 (240)
T d2bd0a1 80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHS----- 154 (240)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC-----
T ss_pred HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCCCC-----
Confidence 6899999999764322 456788999999999999998873 3445799999999776655421
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
..|+.+|.+.+.+.+.++.+ +|++++.+.||.+.+|........
T Consensus 155 ----------------~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~~~----------------- 201 (240)
T d2bd0a1 155 ----------------SIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDE----------------- 201 (240)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCST-----------------
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcCHh-----------------
Confidence 34999999999999888776 489999999999988754321100
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
....+..++|+|++++.++..+.
T Consensus 202 -~~~~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 202 -MQALMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp -TGGGSBCHHHHHHHHHHHHTSCT
T ss_pred -hHhcCCCHHHHHHHHHHHHcCCc
Confidence 01124578999999999998654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.2e-24 Score=176.80 Aligned_cols=213 Identities=18% Similarity=0.170 Sum_probs=151.7
Q ss_pred CC-CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCCCeEEEEccCCCHhHHHHHhc-
Q 020608 1 MS-KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 1 m~-~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
|. +++|++|||||++.||.++++.|+++|++|++..|+..+.+ +..+++.. ...++.++.+|++++++++++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~--~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~ 82 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE--ELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSA 82 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHH
Confidence 44 67899999999999999999999999999999998743322 22333332 23478889999999998887655
Q ss_pred ------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCC--cCEEEEecccccccCCCCCCC
Q 020608 77 ------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALG--VKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~~v~~SS~~~~~~~~~~~~ 140 (323)
++|++||||+...... +.+.+...+++|+.++..+.+++ ++.+ -+++|++||.++....+...
T Consensus 83 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~~~- 161 (257)
T d1xg5a_ 83 IRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSV- 161 (257)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGG-
T ss_pred HHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCCcc-
Confidence 6899999999764322 45678899999999999988876 2333 46999999986654332100
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh-----CCccEEEEcCCCccCCCCCCCC-chhHHHHHHHHcC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-----KGLDVVVVNPGTVMGPVIPPTL-NASMLMLLRLLQG 214 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~Rp~~v~G~~~~~~~-~~~~~~~~~~~~g 214 (323)
...|+.+|...+.+.+.++.+ +++++++|.||.+-.+...... ..........
T Consensus 162 ------------------~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~--- 220 (257)
T d1xg5a_ 162 ------------------THFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY--- 220 (257)
T ss_dssp ------------------GHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH---
T ss_pred ------------------cHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC---
Confidence 034999999999999888754 4899999999988665311000 0001111111
Q ss_pred CCCCccCcCCCcccHHHHHHHHHHhhcCCC
Q 020608 215 CTDTYENFFMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 215 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
+ ...++.++|+|++++.++..+.
T Consensus 221 -----~--~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 221 -----E--QMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp -----C-----CBCHHHHHHHHHHHHHSCT
T ss_pred -----C--CCCCcCHHHHHHHHHHHhCChh
Confidence 1 1226789999999999987654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.91 E-value=9.1e-24 Score=177.56 Aligned_cols=226 Identities=12% Similarity=0.116 Sum_probs=156.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC---CCCCeEEEEccCCCHhHHHHHhc---
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG---ADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
+++|++|||||++.||++++++|+++|++|++.+|+.++.+ +..+++.. ...++.++.+|++|+++++++++
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~--~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLE--ETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999743322 22222322 23468999999999998887765
Q ss_pred ----CCCEEEEcccCCccCC------CCCchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCCCc
Q 020608 77 ----GCTGVFHLASPCIVDK------VEDPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|++|||||...... +.+.|...+++|+.++..+.+++. +.+.++++++||.+...+....
T Consensus 80 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~~~---- 155 (274)
T d1xhla_ 80 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGY---- 155 (274)
T ss_dssp HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTTS----
T ss_pred HHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccCCCC----
Confidence 6899999999643221 234578899999999999998873 3445688888887554443321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC--chhHHHHHHHHcCCCC
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL--NASMLMLLRLLQGCTD 217 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~--~~~~~~~~~~~~g~~~ 217 (323)
..|+.+|.+.+.+.+.++.+. |++++.|.||.+..|...... ................
T Consensus 156 -----------------~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (274)
T d1xhla_ 156 -----------------PYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKE 218 (274)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT
T ss_pred -----------------ceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHc
Confidence 349999999999998888774 899999999999887422111 1111112222221111
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcC---CCCCccEE-EEc
Q 020608 218 TYENFFMGSVHFKDVALAHILVYEN---PSACGRHL-CVE 253 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~---~~~~~~~~-~~~ 253 (323)
..|.++ +..++|+|.+++.++.. ..-.|+.+ +.|
T Consensus 219 ~iPlgR--~g~pediA~~v~fL~S~d~s~~itG~~i~vDG 256 (274)
T d1xhla_ 219 CIPVGH--CGKPEEIANIIVFLADRNLSSYIIGQSIVADG 256 (274)
T ss_dssp TCTTSS--CBCHHHHHHHHHHHHCHHHHTTCCSCEEEEST
T ss_pred CCCCCC--CcCHHHHHHHHHHHcCCccccCccCcEEEeCc
Confidence 122222 55899999999999863 22456644 443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.91 E-value=1.1e-23 Score=176.99 Aligned_cols=225 Identities=14% Similarity=0.153 Sum_probs=152.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC---CCCCeEEEEccCCCHhHHHHHhc---
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG---ADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
+++|++|||||++.||++++++|+++|++|++.+|+.++.+ +..+.+.. ...++.++.+|++|+++++++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~--~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLE--ETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999753322 22222222 23468999999999999887765
Q ss_pred ----CCCEEEEcccCCccCC--------CCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecc-cccccCCCCCCC
Q 020608 77 ----GCTGVFHLASPCIVDK--------VEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSS-ISSITPSPKWPA 140 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS-~~~~~~~~~~~~ 140 (323)
++|++|||||...... ..+.|...+++|+.++..+.+++... +...+|+++| .+...+.+..
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~~~~-- 158 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDF-- 158 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCCSS--
T ss_pred HHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCCCCc--
Confidence 6899999999764322 11247888999999999999987332 1235555555 4334433321
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCc--hhHHHHHHHHcCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLN--ASMLMLLRLLQGC 215 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~--~~~~~~~~~~~g~ 215 (323)
..|+.+|.+.+.+.+.++.+ +|++++.|.||.|-+|....... .............
T Consensus 159 -------------------~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~ 219 (272)
T d1xkqa_ 159 -------------------LYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASH 219 (272)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHC
T ss_pred -------------------chhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHH
Confidence 34999999999999888866 48999999999998874321111 0111111111111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCC---CCCccEEEE
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENP---SACGRHLCV 252 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~~~~~~~ 252 (323)
....|.++ +..++|+|.++..++... .-.|+.+..
T Consensus 220 ~~~~PlgR--~g~pediA~~v~fL~S~~as~~iTG~~i~v 257 (272)
T d1xkqa_ 220 KECIPIGA--AGKPEHIANIILFLADRNLSFYILGQSIVA 257 (272)
T ss_dssp TTTCTTSS--CBCHHHHHHHHHHHHCHHHHTTCCSCEEEE
T ss_pred hcCCCCCC--CcCHHHHHHHHHHHhCcchhCCccCeEEEe
Confidence 11122222 568999999999998632 245665433
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.91 E-value=2.4e-24 Score=188.26 Aligned_cols=226 Identities=17% Similarity=0.127 Sum_probs=159.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh-HHHHHhcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD-AIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~d~Vi 82 (323)
+.|+|+|||||||||++|+++|+++||+|+++.|++++..... +.. ..+++++.+|++|.. .+..++.++|.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~-~~~----~~~v~~~~gD~~d~~~~~~~a~~~~~~~~ 76 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEE-LQA----IPNVTLFQGPLLNNVPLMDTLFEGAHLAF 76 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHH-HHT----STTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhh-hcc----cCCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence 5689999999999999999999999999999999886654322 222 247899999998854 5778889999988
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCch
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWY 162 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 162 (323)
+.... ....++..+.+++++|.+.+++++++.||.......... ....|
T Consensus 77 ~~~~~------------~~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~~~~-------------------~~~~~ 125 (350)
T d1xgka_ 77 INTTS------------QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPW-------------------PAVPM 125 (350)
T ss_dssp ECCCS------------TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSC-------------------CCCTT
T ss_pred eeccc------------ccchhhhhhhHHHHHHHHhCCCceEEEeeccccccCCcc-------------------cchhh
Confidence 77643 123467788999999999998888888887433322211 11347
Q ss_pred HHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCC----CCccCcCCCcccH-HHHHHHHH
Q 020608 163 PLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCT----DTYENFFMGSVHF-KDVALAHI 237 (323)
Q Consensus 163 ~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~i~v-~D~a~~~~ 237 (323)
..+|...+.... +.+++++++||+.+++........... ......+.. ...++....++++ +|+++++.
T Consensus 126 ~~~k~~~~~~~~----~~~~~~~~vr~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~ 199 (350)
T d1xgka_ 126 WAPKFTVENYVR----QLGLPSTFVYAGIYNNNFTSLPYPLFQ--MELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALL 199 (350)
T ss_dssp THHHHHHHHHHH----TSSSCEEEEEECEEGGGCBSSSCSSCB--EEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHH
T ss_pred hhhHHHHHHHHH----hhccCceeeeeceeecccccccccccc--ccccccccceeeecccCCCcceEEEeHHHHHHHHH
Confidence 888888877653 568999999999988753221111000 000111111 1134455567775 79999999
Q ss_pred HhhcCCC--CCc-cEEEEcCccCHHHHHHHHHHHCCC
Q 020608 238 LVYENPS--ACG-RHLCVEAISHYGDFVAKVAELYPE 271 (323)
Q Consensus 238 ~~~~~~~--~~~-~~~~~~~~~~~~e~~~~i~~~~~~ 271 (323)
.++.... ..| .|+++++.+|+.|+++.+.+.+|.
T Consensus 200 ~~l~~~~~~~~G~~~~~~g~~~T~~eia~~l~~~~G~ 236 (350)
T d1xgka_ 200 QIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNR 236 (350)
T ss_dssp HHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTS
T ss_pred HHHhCChhhcCCeEEEEeCCcCCHHHHHHHHHHHHCC
Confidence 9886432 234 478888889999999999999874
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.91 E-value=4.6e-24 Score=177.09 Aligned_cols=221 Identities=15% Similarity=0.112 Sum_probs=155.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||+++++.|+++|++|++.+|+.+. ..+..+++ +.+..++.+|++|.++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAA--GQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHH--HHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999886422 22233333 3468889999999998887665
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh---CCcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA---LGVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|++|||||...... +.++|...+++|+.++..+++++.. .+-.++|++||.++..+.+..
T Consensus 79 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~~~~---------- 148 (253)
T d1hxha_ 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQY---------- 148 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCTTB----------
T ss_pred CCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCcccc----------
Confidence 6899999999764322 4567889999999999998888632 223799999999776554321
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh-----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+.+.++.+ ++++++.|.||.+.+|........ ..............+-
T Consensus 149 -----------~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~--~~~~~~~~~~~~~~~~-- 213 (253)
T d1hxha_ 149 -----------AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPK--GVSKEMVLHDPKLNRA-- 213 (253)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCT--TCCHHHHBCBTTTBTT--
T ss_pred -----------ccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcc--hhhHHHHHhCcccccc--
Confidence 34999999999988887755 359999999999987632100000 0001111111111111
Q ss_pred CCcccHHHHHHHHHHhhcCCC--CCccE-EEEc
Q 020608 224 MGSVHFKDVALAHILVYENPS--ACGRH-LCVE 253 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~~~--~~~~~-~~~~ 253 (323)
-.+..++|+|.+++.++.... -.|+. .+.+
T Consensus 214 gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDG 246 (253)
T d1hxha_ 214 GRAYMPERIAQLVLFLASDESSVMSGSELHADN 246 (253)
T ss_dssp CCEECHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CCCCCHHHHHHHHHHHhChhhCCCcCcEEEECc
Confidence 126689999999999986433 35554 4433
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=5e-24 Score=178.38 Aligned_cols=221 Identities=15% Similarity=0.152 Sum_probs=149.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc---CCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE---GADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
+++|++|||||++.||++++++|+++|++|++.+|+.+..+ +..+++. ....++.++.+|++|.++++++++
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~--~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLE--ETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 80 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999753322 2222222 223468999999999999887765
Q ss_pred ----CCCEEEEcccCCccC--------CCCCchhhhhhHHHHHHHHHHHHHhhC---CcCEEEEecccc-cccCCCCCCC
Q 020608 77 ----GCTGVFHLASPCIVD--------KVEDPQNQLLNPAVKGTVNVLTAAKAL---GVKRVVVTSSIS-SITPSPKWPA 140 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~SS~~-~~~~~~~~~~ 140 (323)
++|++|||||..... .+.+.|+..+++|+.++..+.+++... +..++|+++|.. ...+.+..
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~~~~-- 158 (264)
T d1spxa_ 81 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDF-- 158 (264)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCTTS--
T ss_pred HHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccccCCCc--
Confidence 689999999964221 133568889999999999999887431 124666666653 33333221
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCC------chhHHHHHHH
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTL------NASMLMLLRL 211 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~------~~~~~~~~~~ 211 (323)
..|+.+|.+.+.+.+.++.+. |++++.|.||.|-.|...... .........+
T Consensus 159 -------------------~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 219 (264)
T d1spxa_ 159 -------------------PYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATM 219 (264)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHH
T ss_pred -------------------hhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHH
Confidence 339999999999999888774 899999999999887543211 0001111111
Q ss_pred HcCCCCCccCcCCCcccHHHHHHHHHHhhcCC---CCCccEEEE
Q 020608 212 LQGCTDTYENFFMGSVHFKDVALAHILVYENP---SACGRHLCV 252 (323)
Q Consensus 212 ~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~~~~~~~ 252 (323)
...- |.+ .+..++|+|+++..++..+ .-.|+.+..
T Consensus 220 ~~~~----Pl~--R~g~pedvA~~v~fL~S~~~s~~itG~~i~v 257 (264)
T d1spxa_ 220 KECV----PAG--VMGQPQDIAEVIAFLADRKTSSYIIGHQLVV 257 (264)
T ss_dssp HHHC----TTS--SCBCHHHHHHHHHHHHCHHHHTTCCSCEEEE
T ss_pred HhcC----CCC--CCcCHHHHHHHHHHHhCCcccCCccCceEEe
Confidence 1111 111 2567999999999998633 235664433
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.91 E-value=1.3e-23 Score=175.35 Aligned_cols=229 Identities=17% Similarity=0.172 Sum_probs=159.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhc-cCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL-EGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|++++|++|||||++.||++++++|+++|++|++.+|+..+.... .+++ ...+.++.++.+|++|+++++++++
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~--~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEV--TEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHH--HHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999987654332 1222 1124578899999999999887765
Q ss_pred ----CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHh-----hCCcCEEEEecccccccCCCCCCCCcc
Q 020608 77 ----GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAK-----ALGVKRVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
++|++||||+..... .+.+++...+++|+.++..+.+++. +...+.++.+||..........
T Consensus 83 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~----- 157 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----- 157 (260)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE-----
T ss_pred HHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccc-----
Confidence 679999999975432 2456788999999999999888763 2344577777776333222100
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
+ ...+ ....|+.+|.+.+.+.+.++.+ +|+++++|.||.+-.|...... ...........|
T Consensus 158 ~-~~~~--------~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~---~~~~~~~~~~~p---- 221 (260)
T d1h5qa_ 158 L-NGSL--------TQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMD---KKIRDHQASNIP---- 221 (260)
T ss_dssp T-TEEC--------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC---HHHHHHHHHTCT----
T ss_pred c-ccCc--------cccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccC---HHHHHHHHhcCC----
Confidence 0 0001 1134999999999999988876 4899999999999887543221 122333333222
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCccEE-EEcC
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGRHL-CVEA 254 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~-~~~~ 254 (323)
-+ .+..++|+|.++..++.... -.|+.+ +.++
T Consensus 222 l~--R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 256 (260)
T d1h5qa_ 222 LN--RFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 256 (260)
T ss_dssp TS--SCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred CC--CCcCHHHHHHHHHHHhcchhCCCcCceEEECCC
Confidence 11 15578999999999986433 356644 4443
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.91 E-value=8.3e-24 Score=177.98 Aligned_cols=225 Identities=17% Similarity=0.097 Sum_probs=156.6
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|.+++|++|||||++.||++++++|+++|++|++.+|+.++. .+..+++ +.++..+.+|+++.++++++++
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l--~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERL--AELETDH---GDNVLGIVGDVRSLEDQKQAASRCVA 75 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHHc---CCCeeEEecccccHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999874222 1222222 3478899999999998887654
Q ss_pred ---CCCEEEEcccCCccCC-----CC----CchhhhhhHHHHHHHHHHHHHh----hCCcCEEEEecccccccCCCCCCC
Q 020608 77 ---GCTGVFHLASPCIVDK-----VE----DPQNQLLNPAVKGTVNVLTAAK----ALGVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~-----~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
++|++||+||...... .. +.|...+++|+.++..+++++. +.+ .++|++||..+..+.+..
T Consensus 76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~~~~~~-- 152 (276)
T d1bdba_ 76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFYPNGGG-- 152 (276)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSTTSSC--
T ss_pred HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhccCCCCC--
Confidence 6899999999653221 11 2378899999999999988873 333 689999988666544321
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC--CccEEEEcCCCccCCCCCCCCchhH------HHHHHHH
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK--GLDVVVVNPGTVMGPVIPPTLNASM------LMLLRLL 212 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~Rp~~v~G~~~~~~~~~~~------~~~~~~~ 212 (323)
..|+.+|.+.+.+.+.++.+. +++++.|.||.|-.+.......... .......
T Consensus 153 -------------------~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 213 (276)
T d1bdba_ 153 -------------------PLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADML 213 (276)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHH
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHH
Confidence 349999999999998888774 5999999999998875332110000 0011111
Q ss_pred cCCCCCccCcCCCcccHHHHHHHHHHhhcC---CCCCccEEEEcCccC
Q 020608 213 QGCTDTYENFFMGSVHFKDVALAHILVYEN---PSACGRHLCVEAISH 257 (323)
Q Consensus 213 ~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~---~~~~~~~~~~~~~~~ 257 (323)
... .|.++ +..++|+|.+++.++.. ....|+.+..+..++
T Consensus 214 ~~~---~PlgR--~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~~ 256 (276)
T d1bdba_ 214 KSV---LPIGR--MPEVEEYTGAYVFFATRGDAAPATGALLNYDGGLG 256 (276)
T ss_dssp TTT---CTTSS--CCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSGG
T ss_pred Hhc---CCCCC--CcCHHHHHHHHHHHcCCcccCCeeCcEEEECcChh
Confidence 111 11111 55789999999988752 224566443333333
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=2.2e-23 Score=173.90 Aligned_cols=221 Identities=18% Similarity=0.128 Sum_probs=152.9
Q ss_pred CCCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 2 SKEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
+|++|++|||||+| .||++++++|+++|++|++..|+.......+. .........++.+|++|.++++++++
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~---~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEK---LAEALGGALLFRADVTQDEELDALFAGVK 81 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH---HHHHTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH---hhhccCcccccccccCCHHHHHHHHHHHH
Confidence 47899999999998 89999999999999999988886432222222 22223467789999999998887765
Q ss_pred ----CCCEEEEcccCCcc--------CCCCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCc
Q 020608 77 ----GCTGVFHLASPCIV--------DKVEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
++|++||+|+.... ....+++...+++|+.++..+++++... .-+++|++||..+..+.+..
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~~~~---- 157 (256)
T d1ulua_ 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKY---- 157 (256)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTTC----
T ss_pred HhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCCCCc----
Confidence 68999999986421 1233456778999999999999987543 12589999999766554321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+.+.++.+. |++++.|.||.+..+....... .........+.-|
T Consensus 158 -----------------~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~-~~~~~~~~~~~~p--- 216 (256)
T d1ulua_ 158 -----------------NVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPG-FTKMYDRVAQTAP--- 216 (256)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------CHHHHHHHHHHST---
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhh-hHHHHHHHHhcCC---
Confidence 349999999999999988774 8999999999998876443211 1122233322221
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEc
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGRHLCVE 253 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~ 253 (323)
-+ .+..++|+|.++..++.... -.|+.+..+
T Consensus 217 -l~--R~~~pedvA~~v~fL~S~~s~~itG~~i~VD 249 (256)
T d1ulua_ 217 -LR--RNITQEEVGNLGLFLLSPLASGITGEVVYVD 249 (256)
T ss_dssp -TS--SCCCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred -CC--CCcCHHHHHHHHHHHhCchhCCccCCeEEEC
Confidence 11 15679999999999997543 356644433
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.2e-23 Score=176.78 Aligned_cols=229 Identities=15% Similarity=0.134 Sum_probs=158.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHH-HHHh-hcc-CCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERET-AHLK-ALE-GADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~-~~~-~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
+++|++|||||++.||++++++|+++|++|++.+|+.++.... +.+. .+. ..+.++.++.+|++|+++++++++
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 89 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 89 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999975432221 1111 111 224578999999999999887765
Q ss_pred ----CCCEEEEcccCCccC----CCCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ----GCTGVFHLASPCIVD----KVEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|++||||+..... .+.+.+...+++|+.++..+.+++.. .+..++|++||. .....+.
T Consensus 90 ~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~-~~~~~~~------- 161 (297)
T d1yxma1 90 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP-TKAGFPL------- 161 (297)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC-CTTCCTT-------
T ss_pred HHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccc-ccccccc-------
Confidence 689999999875332 24567889999999999999988732 334578888765 3222221
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+.+.++.+. |++++.|.||.|..|.......... ...........|.
T Consensus 162 --------------~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~---~~~~~~~~~~~pl 224 (297)
T d1yxma1 162 --------------AVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWG---QSFFEGSFQKIPA 224 (297)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGG---GGGGTTGGGGSTT
T ss_pred --------------cccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccC---HHHHHHHHhcCCC
Confidence 1349999999999999998775 8999999999998875422211110 0111111001121
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcCccCH
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHLCVEAISHY 258 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~~~~~ 258 (323)
+ .+..++|+|.+++.++.... -.|+.+..+...|+
T Consensus 225 g--R~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~sl 261 (297)
T d1yxma1 225 K--RIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 261 (297)
T ss_dssp S--SCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred C--CCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcChhh
Confidence 1 25678999999999996433 35664444433443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.91 E-value=4.8e-23 Score=171.89 Aligned_cols=224 Identities=18% Similarity=0.109 Sum_probs=157.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
|.+|+||||||++.||.+++++|+++|++|++..|+.. ....+..+.+...+.++.++.+|++|.++++++++
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~-~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS-KAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCCh-HHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999998776542 22223344444445688999999999998887665
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEeccccccc-CCCCCCCCccccCCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSIT-PSPKWPADKVKDEDC 148 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~-~~~~~~~~~~~~e~~ 148 (323)
.+|++||+||...... +.+.++..+++|+.+..++++++... .-+++++++|.++.. +.+..
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~~~~---------- 152 (259)
T d1ja9a_ 83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPNH---------- 152 (259)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCCSC----------
T ss_pred CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCCCCc----------
Confidence 6899999999764322 45677899999999999999997442 124676676653432 22211
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCC----------CCCCchhHHHHHHHHcCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVI----------PPTLNASMLMLLRLLQGC 215 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~----------~~~~~~~~~~~~~~~~g~ 215 (323)
..|+.+|.+.+.+++.++.++ |++++.|.||.+-.|.. .........+...+....
T Consensus 153 -----------~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (259)
T d1ja9a_ 153 -----------ALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMN 221 (259)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTS
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCC
Confidence 349999999999999988763 89999999999976521 011111112222322322
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccE-EEEcC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS--ACGRH-LCVEA 254 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~-~~~~~ 254 (323)
|. ..+..++|+|++++.++.... -.|+. .+.++
T Consensus 222 pl------~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG 257 (259)
T d1ja9a_ 222 PL------KRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 257 (259)
T ss_dssp TT------SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CC------CCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCC
Confidence 21 126689999999999997644 34553 34443
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=2.1e-23 Score=171.34 Aligned_cols=209 Identities=16% Similarity=0.105 Sum_probs=150.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC-HhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD-YDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~d~V 81 (323)
|++|++|||||++.||++++++|+++|++|++.+|+. + .+++. ..+++.+|+++ .+.+.+.+.++|++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~---~---~l~~~-----~~~~~~~Dv~~~~~~~~~~~g~iD~l 70 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE---E---LLKRS-----GHRYVVCDLRKDLDLLFEKVKEVDIL 70 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---H---HHHHT-----CSEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH---H---HHHhc-----CCcEEEcchHHHHHHHHHHhCCCcEE
Confidence 6899999999999999999999999999999999863 1 22221 45678899986 34555666689999
Q ss_pred EEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCCCChh
Q 020608 82 FHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEE 153 (323)
Q Consensus 82 ih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~ 153 (323)
|||||...... +.+++...+++|+.++..+++++ ++.+..++|++||.....+....
T Consensus 71 VnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~~~--------------- 135 (234)
T d1o5ia_ 71 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENL--------------- 135 (234)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTB---------------
T ss_pred EecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccccccccccc---------------
Confidence 99999653322 45678889999999999888886 33455699999998555443321
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHH
Q 020608 154 YCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFK 230 (323)
Q Consensus 154 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~ 230 (323)
..|+.+|.+.+.+.+.++.+. |++++.|.||.+..|....... ......+.+.. |.+ .+..++
T Consensus 136 ------~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~--~~~~~~~~~~~----pl~--R~~~pe 201 (234)
T d1o5ia_ 136 ------YTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLS--EEKKKQVESQI----PMR--RMAKPE 201 (234)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSC--HHHHHHHHTTS----TTS--SCBCHH
T ss_pred ------ccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcC--HHHHHHHHhcC----CCC--CCcCHH
Confidence 349999999999988888764 8999999999998875321111 11122222221 111 256899
Q ss_pred HHHHHHHHhhcCCC--CCccEEE
Q 020608 231 DVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 231 D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
|+|.++..++.... ..|+.+.
T Consensus 202 diA~~v~fL~S~~s~~itG~~i~ 224 (234)
T d1o5ia_ 202 EIASVVAFLCSEKASYLTGQTIV 224 (234)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEE
T ss_pred HHHHHHHHHhChhhcCCcCcEEE
Confidence 99999999986433 3566443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.90 E-value=2.4e-23 Score=171.60 Aligned_cols=215 Identities=20% Similarity=0.167 Sum_probs=155.5
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
+++|++|||||++.||++++++|+++|++|++..|+.++ ..+..+++ +.++.++++|++++++++++++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~--~~~~~~~~---~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL--LAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHc---CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999987422 22333333 4578899999999999887665
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDCW 149 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~ 149 (323)
++|++||+|+...... +.+.|...+++|+.++..+.+++... +-+.++++||. +....+.
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~-a~~~~~~------------ 144 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV-AGLGAFG------------ 144 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC-TTCCHHH------------
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc-ccccccC------------
Confidence 6899999998754322 45678899999999999999997443 23456666655 2221110
Q ss_pred CChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCc
Q 020608 150 TDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGS 226 (323)
Q Consensus 150 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 226 (323)
...|+.+|.+.+.+.+.++.++ |+++++|.||.+-++..... .........+..| .+ .+
T Consensus 145 ---------~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~---~~~~~~~~~~~~p----~~--r~ 206 (241)
T d2a4ka1 145 ---------LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL---PPWAWEQEVGASP----LG--RA 206 (241)
T ss_dssp ---------HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS---CHHHHHHHHHTST----TC--SC
T ss_pred ---------ccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhh---hHhHHHHHHhCCC----CC--CC
Confidence 0349999999999999998885 79999999999988754321 1223333333222 11 25
Q ss_pred ccHHHHHHHHHHhhcCCC--CCccEEEEc
Q 020608 227 VHFKDVALAHILVYENPS--ACGRHLCVE 253 (323)
Q Consensus 227 i~v~D~a~~~~~~~~~~~--~~~~~~~~~ 253 (323)
..++|+|+++..++.... ..|+.+..+
T Consensus 207 ~~p~dva~~v~fL~S~~s~~itG~~i~vD 235 (241)
T d2a4ka1 207 GRPEEVAQAALFLLSEESAYITGQALYVD 235 (241)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred cCHHHHHHHHHHHhcchhCCCcCceEEeC
Confidence 589999999999997433 356644433
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.5e-22 Score=170.87 Aligned_cols=226 Identities=23% Similarity=0.213 Sum_probs=153.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEe---cCCCcHH-HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATV---KNLSDER-ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~---r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
.|.||||||+++||+++++.|+++|.+|+.+. |+..... ..+..+.+...+.++..+.+|++|.++++++++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 36689999999999999999999998755554 4332222 223334444456689999999999999998875
Q ss_pred -CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 -GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 -~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
.+|+++|+|+...... +.+.+...+++|+.|+.++++++ ++.+-+++|++||.++..+.+..
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~~~--------- 152 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFN--------- 152 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTC---------
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCCCc---------
Confidence 4799999999764432 45678899999999999999886 34455799999999777665432
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHH--------HHHHHcCCC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLM--------LLRLLQGCT 216 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~--------~~~~~~g~~ 216 (323)
..|+.||.+.+.+.+.++.+ +|+++++|.||.|-.+............ ..+..+...
T Consensus 153 ------------~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (285)
T d1jtva_ 153 ------------DVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLA 220 (285)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHH
Confidence 34999999999999988877 4899999999999887543221111110 000000000
Q ss_pred CCccCcCCCcccHHHHHHHHHHhhcCCCCCccEEE
Q 020608 217 DTYENFFMGSVHFKDVALAHILVYENPSACGRHLC 251 (323)
Q Consensus 217 ~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~ 251 (323)
.........+..++|+|++++.+++.+...-.|..
T Consensus 221 ~~~~~~~~~~~~PeeVA~~v~~~~~~~~p~~ry~~ 255 (285)
T d1jtva_ 221 HSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFT 255 (285)
T ss_dssp HHHHHHHHHCBCHHHHHHHHHHHHHCSSCCSEEES
T ss_pred HHhhhhcccCCCHHHHHHHHHHHHhCCCCCeEEec
Confidence 00000001145789999999999987654333443
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.4e-22 Score=167.33 Aligned_cols=220 Identities=17% Similarity=0.143 Sum_probs=156.7
Q ss_pred CC-CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc---
Q 020608 1 MS-KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--- 76 (323)
Q Consensus 1 m~-~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 76 (323)
|. +++|++|||||++.||+++++.|+++|++|++.+|+++ .++++.+ ..++....+|+.+.+..+...+
T Consensus 1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~------~l~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 73 (245)
T d2ag5a1 1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES------KLQELEK-YPGIQTRVLDVTKKKQIDQFANEVE 73 (245)
T ss_dssp CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH------HHGGGGG-STTEEEEECCTTCHHHHHHHHHHCS
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH------HHHHHHh-ccCCceeeeeccccccccccccccc
Confidence 66 78999999999999999999999999999999998642 1222222 2467888999988877666544
Q ss_pred CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh----CCcCEEEEecccccc-cCCCCCCCCccccCC
Q 020608 77 GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA----LGVKRVVVTSSISSI-TPSPKWPADKVKDED 147 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~-~~~~~~~~~~~~~e~ 147 (323)
++|++||+||...... +.+.|...+++|+.++..+.+++.. .+..++|++||..+. .+...
T Consensus 74 ~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~---------- 143 (245)
T d2ag5a1 74 RLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVN---------- 143 (245)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTT----------
T ss_pred cceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCCccc----------
Confidence 7899999999764432 5567899999999999999988742 344699999987442 22211
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCC---CchhHHHHHHHHcCCCCCccC
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPT---LNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~~~~~~ 221 (323)
...|+.+|.+.+.+++.++.+. |++++.|.||.+-+|..... ..........+....| -
T Consensus 144 -----------~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p----l 208 (245)
T d2ag5a1 144 -----------RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK----T 208 (245)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT----T
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCC----C
Confidence 1449999999999999998774 89999999999988742210 0001112222222221 1
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcC
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHLCVEA 254 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~ 254 (323)
..+..++|+|+++..++.... -.|+.+..+.
T Consensus 209 --~R~~~pedva~~v~fL~s~~s~~iTG~~i~VDG 241 (245)
T d2ag5a1 209 --GRFATAEEIAMLCVYLASDESAYVTGNPVIIDG 241 (245)
T ss_dssp --SSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred --CCCcCHHHHHHHHHHHhChhhCCCcCceEEeCC
Confidence 126689999999999997543 3566444333
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=1e-22 Score=172.99 Aligned_cols=199 Identities=17% Similarity=0.067 Sum_probs=146.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc-------HHHHHHHhhccCCCCCeEEEEccCCCHhHHHH
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD-------ERETAHLKALEGADTRLRLFQIDLLDYDAIAA 73 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (323)
|.+++|++|||||+++||++++++|+++|++|++.+|+.+. ....+..+.+.. ......+|++|.++.++
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~ 79 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR---RGGKAVANYDSVEAGEK 79 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH---TTCEEEEECCCGGGHHH
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhh---cccccccccchHHHHHH
Confidence 77899999999999999999999999999999998876431 111122222222 23445678888777665
Q ss_pred Hhc-------CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCC
Q 020608 74 AVT-------GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKW 138 (323)
Q Consensus 74 ~~~-------~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~ 138 (323)
+++ ++|++|||||...... +.+.|...+++|+.++..+++++ ++.+-++||++||.++.++....
T Consensus 80 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~~~ 159 (302)
T d1gz6a_ 80 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQ 159 (302)
T ss_dssp HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCCCc
Confidence 543 6899999999764322 45678899999999999999986 34455799999999887766532
Q ss_pred CCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCC
Q 020608 139 PADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGC 215 (323)
Q Consensus 139 ~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 215 (323)
..|+.+|...+.+.+.++.+. |++++.|.||.+-.+..... . .-+.+
T Consensus 160 ---------------------~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~-~---~~~~~----- 209 (302)
T d1gz6a_ 160 ---------------------ANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVM-P---EDLVE----- 209 (302)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGS-C---HHHHH-----
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcC-c---HhhHh-----
Confidence 349999999999999998774 89999999997744321110 0 11111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcC
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~ 242 (323)
++.++|+|.++++++..
T Consensus 210 ----------~~~PedvA~~v~fL~S~ 226 (302)
T d1gz6a_ 210 ----------ALKPEYVAPLVLWLCHE 226 (302)
T ss_dssp ----------HSCGGGTHHHHHHHTST
T ss_pred ----------cCCHHHHHHHHHHHcCC
Confidence 23579999999999863
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.89 E-value=7.3e-22 Score=165.91 Aligned_cols=223 Identities=17% Similarity=0.095 Sum_probs=156.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+|++|++|||||++.||++++++|+++|++|++.+|+..+ ...+..+.+...+.++.++.+|++|+++++++++
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~-~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE-SAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH-HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchH-HHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998886432 2223333444445688999999999998887765
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
++|++||+++...... ..+.+...+++|+.++..+++++... .-+++++++|..+......
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~~~----------- 162 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVP----------- 162 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCS-----------
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccccccc-----------
Confidence 6799999999764432 45667889999999999999998542 2357888877643322110
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCC---------CCCchhHHHH-HHHHcCC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIP---------PTLNASMLML-LRLLQGC 215 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~---------~~~~~~~~~~-~~~~~g~ 215 (323)
....|+.+|.+.+.+++.++.+ +|++++.|.||.+-+|... .......... .......
T Consensus 163 ---------~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (272)
T d1g0oa_ 163 ---------KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWS 233 (272)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSC
T ss_pred ---------chhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccC
Confidence 1134999999999999988876 4899999999999775310 0000011111 1111111
Q ss_pred CCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 216 TDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 216 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
| -+ .+..++|+|.++..++.... ..|+.+.
T Consensus 234 P----lg--R~~~peevA~~v~fL~s~~s~~itG~~i~ 265 (272)
T d1g0oa_ 234 P----LR--RVGLPIDIARVVCFLASNDGGWVTGKVIG 265 (272)
T ss_dssp T----TC--SCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred C----CC--CCcCHHHHHHHHHHHhCchhcCccCceEe
Confidence 1 11 26789999999999997543 3566443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.89 E-value=8.2e-22 Score=167.68 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=152.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-GADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
++++|++|||||+|+||++++++|+++|++|++.+|+..+.. +..+++. ..+....++.+|+++.++++++++
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~--~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLK--ATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH--HHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH--HHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence 467899999999999999999999999999999999753322 2222221 124578889999999998877654
Q ss_pred ---CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHh-----hCCcCEEEEecccccccCCCCCCCCccc
Q 020608 77 ---GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAK-----ALGVKRVVVTSSISSITPSPKWPADKVK 144 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~~~~~ 144 (323)
++|++||+|+...... ....+...+.+|..+...+...+. ..+...++.+||.++..+.+..
T Consensus 100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~~------ 173 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFV------ 173 (294)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTC------
T ss_pred hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhccccc------
Confidence 6899999999764322 334566778888888777766542 2334578888887555544321
Q ss_pred cCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccC
Q 020608 145 DEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYEN 221 (323)
Q Consensus 145 ~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (323)
..|+.+|.+.+.+++.++.++ |+++++|.||.+.+|...................-|.
T Consensus 174 ---------------~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl---- 234 (294)
T d1w6ua_ 174 ---------------VPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPC---- 234 (294)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTT----
T ss_pred ---------------chHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCC----
Confidence 349999999999999988774 8999999999999886433222121223333332221
Q ss_pred cCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 222 FFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 222 ~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
+ .+..++|+|.++..++.... -.|+.+
T Consensus 235 ~--R~~~pediA~~v~fL~sd~s~~itG~~i 263 (294)
T d1w6ua_ 235 G--RLGTVEELANLAAFLCSDYASWINGAVI 263 (294)
T ss_dssp S--SCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred C--CCCCHHHHHHHHHHHhCchhcCCCCcEE
Confidence 1 25579999999999997533 356644
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=3.6e-22 Score=166.66 Aligned_cols=212 Identities=16% Similarity=0.087 Sum_probs=150.0
Q ss_pred CCCceEEEeccccHHHHHHHHHHHH---CCCEEEEEecCCCcHHHHHHHhhcc--CCCCCeEEEEccCCCHhHHHHHhc-
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLE---RRYTVHATVKNLSDERETAHLKALE--GADTRLRLFQIDLLDYDAIAAAVT- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~- 76 (323)
|++|.++||||+++||.+++++|++ +|++|++.+|+.+..+ +..+++. ..+.++.++.+|++|+++++++++
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~--~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLR--QLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHH--HHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHH--HHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 6789999999999999999999986 6999999999753322 2222222 224478899999999999887753
Q ss_pred ----------CCCEEEEcccCCccC-------CCCCchhhhhhHHHHHHHHHHHHHhhC----C--cCEEEEeccccccc
Q 020608 77 ----------GCTGVFHLASPCIVD-------KVEDPQNQLLNPAVKGTVNVLTAAKAL----G--VKRVVVTSSISSIT 133 (323)
Q Consensus 77 ----------~~d~Vih~a~~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~SS~~~~~ 133 (323)
.+|+++|+||..... .+.+.+...+++|+.++..+.+++... + .+++|++||.++..
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 357999999864211 123467889999999999999998432 2 35899999997766
Q ss_pred CCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-CccEEEEcCCCccCCCCCCCC--chhHHHHHH
Q 020608 134 PSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-GLDVVVVNPGTVMGPVIPPTL--NASMLMLLR 210 (323)
Q Consensus 134 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~Rp~~v~G~~~~~~~--~~~~~~~~~ 210 (323)
+.+.. ..|+.+|...+.+.+.++.+. |++++.|.||.|.++...... .........
T Consensus 162 ~~~~~---------------------~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~ 220 (259)
T d1oaaa_ 162 PYKGW---------------------GLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSK 220 (259)
T ss_dssp CCTTC---------------------HHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHH
T ss_pred CCccc---------------------hHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHH
Confidence 55432 349999999999999988774 999999999999886421000 000011111
Q ss_pred HHcCCCCCccCcCCCcccHHHHHHHHHHhhcCC
Q 020608 211 LLQGCTDTYENFFMGSVHFKDVALAHILVYENP 243 (323)
Q Consensus 211 ~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 243 (323)
+.... +. ..+..++|+|++++.+++..
T Consensus 221 ~~~~~----~~--~r~~~p~evA~~i~~ll~~~ 247 (259)
T d1oaaa_ 221 LQKLK----SD--GALVDCGTSAQKLLGLLQKD 247 (259)
T ss_dssp HHHHH----HT--TCSBCHHHHHHHHHHHHHHC
T ss_pred HHhcC----CC--CCCCCHHHHHHHHHHHhhhc
Confidence 11100 11 11467999999999988643
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.88 E-value=8.4e-22 Score=164.56 Aligned_cols=206 Identities=18% Similarity=0.177 Sum_probs=152.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHH-HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDER-ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------ 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (323)
.+++|||||+|+||.+++++|+++|+ +|+++.|+..+.+ ..+...++...+.++.++.+|++|.++++++++
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~ 88 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV 88 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence 56999999999999999999999998 5888888643322 223334444445689999999999999998876
Q ss_pred CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccCCCCCCCCccccCCCCCCh
Q 020608 77 GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDE 152 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~ 152 (323)
.+|.|||+++...... ..+.+...+++|+.++.++.++++..+.+++|++||.++..+....
T Consensus 89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~~~~-------------- 154 (259)
T d2fr1a1 89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPGL-------------- 154 (259)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTTC--------------
T ss_pred cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCCccc--------------
Confidence 3689999999764332 3345677899999999999999888777899999999888776543
Q ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhCCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHH
Q 020608 153 EYCRQNEIWYPLSKTLAEKAAWEFAKEKGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDV 232 (323)
Q Consensus 153 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~ 232 (323)
..|+.+|...+.++..++ ..|++++.|.||.+.+++..... ...++ .......+.++++
T Consensus 155 -------~~YaAaka~l~~la~~~~-~~Gi~v~~I~pg~~~~~g~~~~~-----~~~~~--------~~~G~~~~~~~~~ 213 (259)
T d2fr1a1 155 -------GGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGMAEGP-----VADRF--------RRHGVIEMPPETA 213 (259)
T ss_dssp -------TTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC-----------------C--------TTTTEECBCHHHH
T ss_pred -------HHHHHHHHhHHHHHHHHH-hCCCCEEECCCCcccCCccccch-----HHHHH--------HhcCCCCCCHHHH
Confidence 339999999999988776 46999999999999877542110 01110 0111235679999
Q ss_pred HHHHHHhhcCCCC
Q 020608 233 ALAHILVYENPSA 245 (323)
Q Consensus 233 a~~~~~~~~~~~~ 245 (323)
++++..++.+...
T Consensus 214 ~~~l~~~l~~~~~ 226 (259)
T d2fr1a1 214 CRALQNALDRAEV 226 (259)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCc
Confidence 9999999987654
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.88 E-value=3.7e-22 Score=165.67 Aligned_cols=211 Identities=11% Similarity=0.019 Sum_probs=149.2
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-------CCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-------GCT 79 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 79 (323)
++|||||+++||++++++|+++|++|++.+|+....+..+.... .+..+|+++.++++++++ ++|
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~--------~~~~~dv~~~~~~~~~~~~~~~~~G~iD 73 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAE--------TYPQLKPMSEQEPAELIEAVTSAYGQVD 73 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHH--------HCTTSEECCCCSHHHHHHHHHHHHSCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhC--------cEEEeccCCHHHHHHHHHHHHHHcCCCC
Confidence 78999999999999999999999999999887655443332211 123578877766665543 789
Q ss_pred EEEEcccCCcc-C----CCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccCCCCC
Q 020608 80 GVFHLASPCIV-D----KVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDEDCWT 150 (323)
Q Consensus 80 ~Vih~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~ 150 (323)
++|||||.... . .+.+++...+++|+.++..+++++ ++.+-+++|++||.++..+.+..
T Consensus 74 iLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~~~------------ 141 (252)
T d1zmta1 74 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKEL------------ 141 (252)
T ss_dssp EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTC------------
T ss_pred EEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccccc------------
Confidence 99999986422 1 144568889999999999998886 34445799999999765554321
Q ss_pred ChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCch-----hHHHHHHHHcCCCCCccCc
Q 020608 151 DEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNA-----SMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 151 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.+|...+.+.+.++.+. |++++.|.||.+.++........ .......+.+.. |-+
T Consensus 142 ---------~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~----pl~ 208 (252)
T d1zmta1 142 ---------STYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT----ALQ 208 (252)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHS----SSS
T ss_pred ---------cccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcC----CCC
Confidence 349999999999999988774 89999999999988764432111 011222222221 111
Q ss_pred CCCcccHHHHHHHHHHhhcCCC--CCccEEEE
Q 020608 223 FMGSVHFKDVALAHILVYENPS--ACGRHLCV 252 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~ 252 (323)
.+..++|+|.++..++.... ..|+.+..
T Consensus 209 --R~g~pedvA~~v~fL~S~~s~~iTG~~i~v 238 (252)
T d1zmta1 209 --RLGTQKELGELVAFLASGSCDYLTGQVFWL 238 (252)
T ss_dssp --SCBCHHHHHHHHHHHHTTSCGGGTTCEEEE
T ss_pred --CCcCHHHHHHHHHHHhCchhcCCcCCeEEE
Confidence 25689999999999997544 25564433
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=5.6e-21 Score=158.42 Aligned_cols=213 Identities=17% Similarity=0.131 Sum_probs=151.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++++|++|||||++.||.+++++|+++|++|++.+|+.+..+. ..+++ .........|+.+.+.+++...
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~--~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEA--QAKKL---GNNCVFAPADVTSEKDVQTALALAKGK 76 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHH--HHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH--HHHHh---CCCcccccccccccccccccccccccc
Confidence 5799999999999999999999999999999999998755443 23333 2367888999998877665433
Q ss_pred --CCCEEEEcccCCccCC----------CCCchhhhhhHHHHHHHHHHHHHhh----------CCcCEEEEecccccccC
Q 020608 77 --GCTGVFHLASPCIVDK----------VEDPQNQLLNPAVKGTVNVLTAAKA----------LGVKRVVVTSSISSITP 134 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~----------~~~~~~v~~SS~~~~~~ 134 (323)
..|.++++++...... ..+.+...+++|+.++.++.+++.. .+.+++|++||.++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~ 156 (248)
T d2o23a1 77 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG 156 (248)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC
T ss_pred cccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccC
Confidence 5688888876542211 2346778999999999999998733 13358999999977765
Q ss_pred CCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHH
Q 020608 135 SPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRL 211 (323)
Q Consensus 135 ~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~ 211 (323)
.+.. ..|+.+|.+.+.+.+.++.++ |++++.|.||.+..+...... .......
T Consensus 157 ~~~~---------------------~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~---~~~~~~~ 212 (248)
T d2o23a1 157 QVGQ---------------------AAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLP---EKVCNFL 212 (248)
T ss_dssp CTTC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------CHH
T ss_pred CCCc---------------------hHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCC---HHHHHHH
Confidence 5432 349999999999999998774 899999999999887543211 1111112
Q ss_pred HcCCCCCccCcCCCcccHHHHHHHHHHhhcCCCCCcc
Q 020608 212 LQGCTDTYENFFMGSVHFKDVALAHILVYENPSACGR 248 (323)
Q Consensus 212 ~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 248 (323)
....|. . ..+..++|+|+++..+++.+...|+
T Consensus 213 ~~~~pl---~--~R~g~peevA~~v~fL~s~~~itGq 244 (248)
T d2o23a1 213 ASQVPF---P--SRLGDPAEYAHLVQAIIENPFLNGE 244 (248)
T ss_dssp HHTCSS---S--CSCBCHHHHHHHHHHHHHCTTCCSC
T ss_pred HhcCCC---C--CCCcCHHHHHHHHHHHHhCCCCCce
Confidence 121111 0 1256899999999999875444444
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.86 E-value=1.4e-20 Score=155.81 Aligned_cols=172 Identities=20% Similarity=0.207 Sum_probs=129.9
Q ss_pred CceEEEeccccHHHHHHHHHHHH---CCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLE---RRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
||+||||||+++||.+++++|++ +|++|++.+|+.++.+..+.+. ....++.++.+|++|+++++++++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 78 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLA---KNHSNIHILEIDLRNFDAYDKLVADIEGV 78 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHH---HHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH---hcCCcEEEEEEEeccHHHHHHHHhhhHHH
Confidence 79999999999999999999974 6999999999886654433222 224589999999999988776543
Q ss_pred ----CCCEEEEcccCCccCC-----CCCchhhhhhHHHHHHHHHHHHHhh---------------CCcCEEEEecccccc
Q 020608 77 ----GCTGVFHLASPCIVDK-----VEDPQNQLLNPAVKGTVNVLTAAKA---------------LGVKRVVVTSSISSI 132 (323)
Q Consensus 77 ----~~d~Vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~---------------~~~~~~v~~SS~~~~ 132 (323)
++|++|||||...... ..+.+...+++|+.++..+++++.. .+.+++|++||..+.
T Consensus 79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~ 158 (248)
T d1snya_ 79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS 158 (248)
T ss_dssp HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 5899999999754322 3344778999999999999888621 134699999998544
Q ss_pred cCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCC
Q 020608 133 TPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVI 197 (323)
Q Consensus 133 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~ 197 (323)
......+ ....|+.||.+...+.+.++.+. |++++.+.||.|-.+..
T Consensus 159 ~~~~~~~------------------~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~ 208 (248)
T d1snya_ 159 IQGNTDG------------------GMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMG 208 (248)
T ss_dssp STTCCSC------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTT
T ss_pred cCCCCCC------------------ChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcc
Confidence 3221100 01349999999999988887663 89999999999988754
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.1e-20 Score=158.98 Aligned_cols=210 Identities=20% Similarity=0.132 Sum_probs=143.9
Q ss_pred CCceE-EEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 4 EAEVV-CVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 4 ~~~~v-lItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
++|+| |||||+++||.+++++|+++ |++|++.+|+.++. .+..+++...+.++.++.+|++|.++++++++
T Consensus 1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~--~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRG--QAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHH--HHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHH--HHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHh
Confidence 36666 99999999999999999986 89999999975432 23444454445688999999999998887654
Q ss_pred --CCCEEEEcccCCccCCC----CCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCC-------
Q 020608 77 --GCTGVFHLASPCIVDKV----EDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPAD------- 141 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~------- 141 (323)
++|++|||||....... .+.+...+++|+.|+..+++.+... .-+++|++||.++..+.....+.
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~ 158 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS 158 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcc
Confidence 68999999998643322 2346678999999999999998542 12599999998665432210000
Q ss_pred cccc---------------CCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh-------CCccEEEEcCCCccCCCCCC
Q 020608 142 KVKD---------------EDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-------KGLDVVVVNPGTVMGPVIPP 199 (323)
Q Consensus 142 ~~~~---------------e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-------~~~~~~~~Rp~~v~G~~~~~ 199 (323)
.... ...... ....+...|+.||.....+.+.++.+ .++.++.+.||.|..+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~ 236 (275)
T d1wmaa1 159 ETITEEELVGLMNKFVEDTKKGVHQ--KEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP 236 (275)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTT--TTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT
T ss_pred cccchhhhccccccchhcccccccc--cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccC
Confidence 0000 000000 00011245999999988777665544 38999999999998765321
Q ss_pred CCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhc
Q 020608 200 TLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYE 241 (323)
Q Consensus 200 ~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~ 241 (323)
. ....++|.|+..+.++.
T Consensus 237 ~------------------------~~~~pee~A~~~~~~a~ 254 (275)
T d1wmaa1 237 K------------------------ATKSPEEGAETPVYLAL 254 (275)
T ss_dssp T------------------------CSBCHHHHTHHHHHHHS
T ss_pred c------------------------ccCCHHHHHHHHHHHHc
Confidence 1 02258999998888764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=8.7e-20 Score=152.09 Aligned_cols=224 Identities=14% Similarity=0.082 Sum_probs=153.7
Q ss_pred CCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++|+||||||+| .||+++++.|+++|++|++..|+.......+... ........+..|+.+..+..+.++
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFA---AQLGSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHH---HHTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH---hhcCCcceeecccchHHHHHHHHHHhhh
Confidence 6899999999999 8999999999999999999999754333222222 222356778899999877666553
Q ss_pred ---CCCEEEEcccCCccCC---------CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCc
Q 020608 77 ---GCTGVFHLASPCIVDK---------VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADK 142 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~---------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~ 142 (323)
.+|++||+|+...... ..+.+...+.+|+.+...+..++... +-+.+|++||.++..+.+..
T Consensus 80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~~~---- 155 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNY---- 155 (258)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTT----
T ss_pred cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCCCc----
Confidence 4699999998753322 12234556778888888888887543 23478999998665544321
Q ss_pred cccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCc
Q 020608 143 VKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTY 219 (323)
Q Consensus 143 ~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 219 (323)
..|+.+|.+.+.+++.++.+. |+++++|+||.|.++...... .............|
T Consensus 156 -----------------~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~-~~~~~~~~~~~~~p--- 214 (258)
T d1qsga_ 156 -----------------NVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIK-DFRKMLAHCEAVTP--- 214 (258)
T ss_dssp -----------------THHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGST-THHHHHHHHHHHST---
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccc-hhhhHHHHHHhCCC---
Confidence 349999999999999988774 799999999999988644221 11222222222111
Q ss_pred cCcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcCccC
Q 020608 220 ENFFMGSVHFKDVALAHILVYENPS--ACGRHLCVEAISH 257 (323)
Q Consensus 220 ~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~~~~ 257 (323)
.+ .+..++|+|.++..++.+.. -.|+....+...+
T Consensus 215 -l~--R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 215 -IR--RTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFS 251 (258)
T ss_dssp -TS--SCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred -CC--CCcCHHHHHHHHHHHhCchhcCccCceEEECcCHH
Confidence 11 25689999999999996533 3566444333333
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.84 E-value=6.8e-20 Score=151.88 Aligned_cols=205 Identities=17% Similarity=0.160 Sum_probs=139.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|+.|+||||||+++||.+++++|+++|+ .|++..|+.++. +.+.+. ...+++++.+|++|.++++++++
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~---~~l~~~--~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 75 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA---TELKSI--KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC---HHHHTC--CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH---HHHHHh--hCCceEEEEEecCCHHHHHHHHHHHHH
Confidence 4569999999999999999999999995 688888875332 223222 24579999999999988776643
Q ss_pred -----CCCEEEEcccCCcc-CC----CCCchhhhhhHHHHHHHHHHHHHhh----C-----------CcCEEEEeccccc
Q 020608 77 -----GCTGVFHLASPCIV-DK----VEDPQNQLLNPAVKGTVNVLTAAKA----L-----------GVKRVVVTSSISS 131 (323)
Q Consensus 77 -----~~d~Vih~a~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-----------~~~~~v~~SS~~~ 131 (323)
++|++|||||.... .. ..+.+.+.+++|+.|+.++.+++.. . ...+++.+||...
T Consensus 76 ~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~ 155 (250)
T d1yo6a1 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred HhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccc
Confidence 38999999997532 11 2345778999999999999888631 1 1247888888744
Q ss_pred ccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCCCCCchhHHHH
Q 020608 132 ITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIPPTLNASMLML 208 (323)
Q Consensus 132 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~~~~~~~~~~~ 208 (323)
........ .+.. +...|+.||.+...+.+.++.+. |++++.+.||.|-.+.....
T Consensus 156 ~~~~~~~~--------~~~~------~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~~-------- 213 (250)
T d1yo6a1 156 SITDNTSG--------SAQF------PVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKN-------- 213 (250)
T ss_dssp CSTTCCST--------TSSS------CBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC----------------
T ss_pred cccCCccc--------ccch------hHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCCC--------
Confidence 33222110 0000 11349999999999999988774 89999999999977642110
Q ss_pred HHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEE
Q 020608 209 LRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHL 250 (323)
Q Consensus 209 ~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~ 250 (323)
..+.+++.+..++..+.+.. ..|.|.
T Consensus 214 ----------------~~~~~e~~a~~~~~~~~~~~~~~sG~f~ 241 (250)
T d1yo6a1 214 ----------------AALTVEQSTAELISSFNKLDNSHNGRFF 241 (250)
T ss_dssp ---------------------HHHHHHHHHHHTTCCGGGTTCEE
T ss_pred ----------------CCCCHHHHHHHHHHHHhcCCCCCCeEEE
Confidence 02357889988888887543 346654
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=3.9e-20 Score=151.91 Aligned_cols=191 Identities=14% Similarity=0.104 Sum_probs=137.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-------hc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-------VT 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-------~~ 76 (323)
++|+||||||+|.||+++++.|+++|++|++++|+..... .....+..|..+.+..+.+ +.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKLLG 68 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------------cccceeecccCcHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999999999999988653211 1234455666555444332 22
Q ss_pred --CCCEEEEcccCCccC-C----CCCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVD-K----VEDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
++|++||+||..... . ..+.++..+++|+.++.++.+++... +-+++|++||.++..+.+..
T Consensus 69 ~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~~--------- 139 (236)
T d1dhra_ 69 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGM--------- 139 (236)
T ss_dssp TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTB---------
T ss_pred CCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCccCC---------
Confidence 489999999853221 1 23456778999999999999987542 23699999999766554321
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHhC-----CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-----GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.||.+.+.+.+.++.+. |++++.+.||.+..|.. ....... .
T Consensus 140 ------------~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~-----------~~~~~~~------~ 190 (236)
T d1dhra_ 140 ------------IGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMN-----------RKSMPEA------D 190 (236)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHH-----------HHHSTTS------C
T ss_pred ------------cccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcc-----------hhhCccc------h
Confidence 349999999999999998663 79999999999987531 1111110 1
Q ss_pred CCCcccHHHHHHHHHHhhcCCC
Q 020608 223 FMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
.-.++.++|+|+.+..++....
T Consensus 191 ~~~~~~pe~va~~~~~l~s~~~ 212 (236)
T d1dhra_ 191 FSSWTPLEFLVETFHDWITGNK 212 (236)
T ss_dssp GGGSEEHHHHHHHHHHHHTTTT
T ss_pred hhcCCCHHHHHHHHHHHhCCCc
Confidence 1126789999999999987543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=7.7e-20 Score=153.12 Aligned_cols=202 Identities=16% Similarity=0.068 Sum_probs=145.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhc-cCCCCCeEEEEccCCCHhHHHHHhc-----
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKAL-EGADTRLRLFQIDLLDYDAIAAAVT----- 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (323)
+++|++||||||++||.+++++|+++|++|++++|+.++.+.. ..++ .........+.+|+.+.+......+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV--VSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--HHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH--HHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999975332221 1221 1223467888999998877665443
Q ss_pred --CCCEEEEcccCCccCC----CCCchhhhhhHHHHHHHHHHHHHhh---CCcCEEEEecccccccCCCCCCCCccccCC
Q 020608 77 --GCTGVFHLASPCIVDK----VEDPQNQLLNPAVKGTVNVLTAAKA---LGVKRVVVTSSISSITPSPKWPADKVKDED 147 (323)
Q Consensus 77 --~~d~Vih~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~ 147 (323)
.+|+++++|+...... +.+.+...+++|+.++..+.+++.. .+-+++|++||.++..+.+..
T Consensus 90 ~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~p~~--------- 160 (269)
T d1xu9a_ 90 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMV--------- 160 (269)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTTC---------
T ss_pred hCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCCCCc---------
Confidence 6799999998764322 3345678899999999998888732 123699999999776655432
Q ss_pred CCCChhhhccCCCchHHHHHHHHHHHHHHHHh-----CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCc
Q 020608 148 CWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE-----KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENF 222 (323)
Q Consensus 148 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (323)
..|+.||.+.+.+.+.++.+ .+++++.+.||.|-++. ......+. .
T Consensus 161 ------------~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~-----------~~~~~~~~------~ 211 (269)
T d1xu9a_ 161 ------------AAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET-----------AMKAVSGI------V 211 (269)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH-----------HHHHSCGG------G
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcH-----------HHHhccCC------c
Confidence 34999999999998888765 36899999999997642 11211111 1
Q ss_pred CCCcccHHHHHHHHHHhhcCCC
Q 020608 223 FMGSVHFKDVALAHILVYENPS 244 (323)
Q Consensus 223 ~~~~i~v~D~a~~~~~~~~~~~ 244 (323)
......++++|+.++..+....
T Consensus 212 ~~~~~~~e~~a~~i~~~~~~~~ 233 (269)
T d1xu9a_ 212 HMQAAPKEECALEIIKGGALRQ 233 (269)
T ss_dssp GGGCBCHHHHHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHhhcCC
Confidence 1124568999999988776443
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.82 E-value=6.7e-20 Score=150.48 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=134.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-------h--
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-------V-- 75 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-------~-- 75 (323)
..|||||||+|.||++++++|+++|++|++++|++.... .....+.+|..+.+..... +
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSLQG 69 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc------------cccceeccccCchhHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999764211 1334456777665443322 2
Q ss_pred cCCCEEEEcccCCccCC--C---CCchhhhhhHHHHHHHHHHHHHhhC--CcCEEEEecccccccCCCCCCCCccccCCC
Q 020608 76 TGCTGVFHLASPCIVDK--V---EDPQNQLLNPAVKGTVNVLTAAKAL--GVKRVVVTSSISSITPSPKWPADKVKDEDC 148 (323)
Q Consensus 76 ~~~d~Vih~a~~~~~~~--~---~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~ 148 (323)
.++|++|||||...... . .+.++..+++|+.++..+.+++... .-+++|++||.++..+.+..
T Consensus 70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~~~---------- 139 (235)
T d1ooea_ 70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSM---------- 139 (235)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTB----------
T ss_pred CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCcccc----------
Confidence 25899999999643211 1 2346678999999999999887543 23599999999777655432
Q ss_pred CCChhhhccCCCchHHHHHHHHHHHHHHHHhC-----CccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcC
Q 020608 149 WTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK-----GLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFF 223 (323)
Q Consensus 149 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (323)
..|+.+|.+.+.+.+.++.+. +++++.+.||.+..|. ........ ..
T Consensus 140 -----------~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~-----------~~~~~~~~------~~ 191 (235)
T d1ooea_ 140 -----------IGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM-----------NRKWMPNA------DH 191 (235)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH-----------HHHHSTTC------CG
T ss_pred -----------cchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcc-----------hhhhCcCC------cc
Confidence 349999999999999998763 6788899999986542 12221111 11
Q ss_pred CCcccHHHHHHHHHHhhcC
Q 020608 224 MGSVHFKDVALAHILVYEN 242 (323)
Q Consensus 224 ~~~i~v~D~a~~~~~~~~~ 242 (323)
..++.++|+++.++.++..
T Consensus 192 ~~~~~~~~va~~~~~~l~~ 210 (235)
T d1ooea_ 192 SSWTPLSFISEHLLKWTTE 210 (235)
T ss_dssp GGCBCHHHHHHHHHHHHHC
T ss_pred ccCCCHHHHHHHHHHHhcC
Confidence 2267899999998765543
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=8.3e-19 Score=144.57 Aligned_cols=204 Identities=21% Similarity=0.150 Sum_probs=145.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc------CC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT------GC 78 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~ 78 (323)
.|++|||||++.||++++++|+++|++|++.+|+.+. .+.....+|+++......+.. ..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 66 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG--------------EDLIYVEGDVTREEDVRRAVARAQEEAPL 66 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS--------------SSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc--------------ccceEeeccccchhhhHHHHHhhhccccc
Confidence 3899999999999999999999999999999987532 256778999998876665543 33
Q ss_pred CEEEEcccCCccC--------CCCCchhhhhhHHHHHHHHHHHHHhh----------CCcCEEEEecccccccCCCCCCC
Q 020608 79 TGVFHLASPCIVD--------KVEDPQNQLLNPAVKGTVNVLTAAKA----------LGVKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 79 d~Vih~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~----------~~~~~~v~~SS~~~~~~~~~~~~ 140 (323)
+.++++++..... ...+.+...+++|+.+...++..+.. .+..++|++||..+..+.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~-- 144 (241)
T d1uaya_ 67 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQ-- 144 (241)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTC--
T ss_pred cchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCCc--
Confidence 5556655543211 12235667889999999888877522 234599999999777665432
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD 217 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 217 (323)
..|+.+|.+.+.+.+.++.+ +|++++.|.||.+..+....... ..........+.
T Consensus 145 -------------------~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~---~~~~~~~~~~~~ 202 (241)
T d1uaya_ 145 -------------------AAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPE---KAKASLAAQVPF 202 (241)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCH---HHHHHHHTTCCS
T ss_pred -------------------hhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhh---hHHHHHHhcCCC
Confidence 34999999999999998876 48999999999998875432221 122233332221
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCCCCccEEE
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPSACGRHLC 251 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~ 251 (323)
. ..+..++|+|.++..++....-.|+.+.
T Consensus 203 ~-----~R~g~pedvA~~v~fL~s~~~iTG~~i~ 231 (241)
T d1uaya_ 203 P-----PRLGRPEEYAALVLHILENPMLNGEVVR 231 (241)
T ss_dssp S-----CSCCCHHHHHHHHHHHHHCTTCCSCEEE
T ss_pred C-----CCCcCHHHHHHHHHHHHhCCCCCCCEEE
Confidence 1 1245799999999999986555666543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.79 E-value=4.8e-18 Score=142.64 Aligned_cols=223 Identities=14% Similarity=0.094 Sum_probs=140.2
Q ss_pred CCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++|++|||||+| .||.+++++|+++|++|++.+|+........... .......++.+|+++.++.+++++
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIA---QELNSPYVYELDVSKEEHFKSLYNSVKK 79 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHH---HHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---hhCCceeEeeecccchhhHHHHHHHHHH
Confidence 6899999999887 8999999999999999999999854333332222 223456778999999988777654
Q ss_pred ---CCCEEEEcccCCccCCC-----CCchhhhh---hHHHHHHHHHHHHHhhC-CcC-EEEEecccccccCCCCCCCCcc
Q 020608 77 ---GCTGVFHLASPCIVDKV-----EDPQNQLL---NPAVKGTVNVLTAAKAL-GVK-RVVVTSSISSITPSPKWPADKV 143 (323)
Q Consensus 77 ---~~d~Vih~a~~~~~~~~-----~~~~~~~~---~~n~~~~~~l~~~~~~~-~~~-~~v~~SS~~~~~~~~~~~~~~~ 143 (323)
.+|++||+++....... ...+.... .++..+.........+. +.. .++.+|+.+...+...
T Consensus 80 ~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~------ 153 (274)
T d2pd4a1 80 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAH------ 153 (274)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTT------
T ss_pred HcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccccccc------
Confidence 67999999997533221 11122222 22222333444443332 222 4555555533322211
Q ss_pred ccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCCCcc
Q 020608 144 KDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTDTYE 220 (323)
Q Consensus 144 ~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 220 (323)
...|+.+|...+.+++.++.+ +|+++++|.||.+..+........ ...........+
T Consensus 154 ---------------~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~-~~~~~~~~~~~p---- 213 (274)
T d2pd4a1 154 ---------------YNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADF-RMILKWNEINAP---- 213 (274)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTH-HHHHHHHHHHST----
T ss_pred ---------------chhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCch-HHHHHHHhhhhh----
Confidence 144999999999998888766 489999999999998764322211 111111111111
Q ss_pred CcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcCcc
Q 020608 221 NFFMGSVHFKDVALAHILVYENPS--ACGRHLCVEAIS 256 (323)
Q Consensus 221 ~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~~~ 256 (323)
...+..++|+|.++..++.... ..|+.+..+...
T Consensus 214 --~~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~ 249 (274)
T d2pd4a1 214 --LRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 249 (274)
T ss_dssp --TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --ccCCcCHHHHHHHHHHHhChhhCCCcCceEEECCCh
Confidence 1225689999999999997543 356655444433
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.79 E-value=2.9e-18 Score=144.77 Aligned_cols=217 Identities=15% Similarity=0.072 Sum_probs=139.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CC-----------------CCeEEEEccCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-AD-----------------TRLRLFQIDLL 66 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~Dl~ 66 (323)
+..+|||||++.||++++++|+++|++|++..|+..+ ...+..+.+.. .. .....+.+|++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~ 80 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAA-EANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT 80 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH-HHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHH-HHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCC
Confidence 4678999999999999999999999999988876422 21122222211 01 12344567788
Q ss_pred CHhHHHHHhc-------CCCEEEEcccCCccCCC----CCc--------------hhhhhhHHHHHHHHHHHHHhh----
Q 020608 67 DYDAIAAAVT-------GCTGVFHLASPCIVDKV----EDP--------------QNQLLNPAVKGTVNVLTAAKA---- 117 (323)
Q Consensus 67 ~~~~~~~~~~-------~~d~Vih~a~~~~~~~~----~~~--------------~~~~~~~n~~~~~~l~~~~~~---- 117 (323)
+.++++++++ ++|++|||||....... .+. +...+.+|+.++..+.+++.+
T Consensus 81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 8888887654 78999999997643221 111 223678899999888887532
Q ss_pred ------CCcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEc
Q 020608 118 ------LGVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVN 188 (323)
Q Consensus 118 ------~~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~R 188 (323)
.+..++++++|.....+.... ..|+.+|...+.+.+.++.++ |++++.|.
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~~~~~~~---------------------~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~ 219 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTNQPLLGY---------------------TIYTMAKGALEGLTRSAALELAPLQIRVNGVG 219 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTTSCCTTC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hHHHhcCCCCcccccccccccCCccce---------------------eeeccccccchhhhHHHHHHhCCccccccccc
Confidence 123478888887544443321 349999999999999988764 89999999
Q ss_pred CCCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEc
Q 020608 189 PGTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLCVE 253 (323)
Q Consensus 189 p~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~ 253 (323)
||.+-.... .............+.. ..+..++|+|.+++.++.... ..|+.+..+
T Consensus 220 PG~t~~~~~-----~~~~~~~~~~~~~pl~-----~R~~~peeiA~~v~fL~S~~s~~itG~~i~VD 276 (284)
T d1e7wa_ 220 PGLSVLVDD-----MPPAVWEGHRSKVPLY-----QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVD 276 (284)
T ss_dssp ESSBCCGGG-----SCHHHHHHHHTTCTTT-----TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred ccccccccc-----CCHHHHHHHHhcCCCC-----CCCCCHHHHHHHHHHHhCchhcCccCCeEEEC
Confidence 997432221 1122333433333211 124579999999999986533 356644433
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.76 E-value=2.7e-17 Score=139.69 Aligned_cols=227 Identities=9% Similarity=-0.029 Sum_probs=141.0
Q ss_pred CCCCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-------C--CC---CeEEEEccCC
Q 020608 1 MSKEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-------A--DT---RLRLFQIDLL 66 (323)
Q Consensus 1 m~~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-------~--~~---~~~~~~~Dl~ 66 (323)
|+|++|++|||||+| .||++++++|+++|++|++..|++.............. . .. +...+..++.
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence 568999999999887 89999999999999999999886432222222111100 0 00 1112222221
Q ss_pred ------------------CHhHHH-------HHhcCCCEEEEcccCCcc------CCCCCchhhhhhHHHHHHHHHHHHH
Q 020608 67 ------------------DYDAIA-------AAVTGCTGVFHLASPCIV------DKVEDPQNQLLNPAVKGTVNVLTAA 115 (323)
Q Consensus 67 ------------------~~~~~~-------~~~~~~d~Vih~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~ 115 (323)
+....+ +.+.++|++||+||.... +.+.+.+...+++|+.+...+++++
T Consensus 84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~ 163 (297)
T d1d7oa_ 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHH
Confidence 111112 223478999999986421 1244567889999999999999997
Q ss_pred hhCC--cCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcC
Q 020608 116 KALG--VKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNP 189 (323)
Q Consensus 116 ~~~~--~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp 189 (323)
.... -++.+.+++.+....... ....|..+|...+.+.+.++.+ +|++++.|.|
T Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~~--------------------~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~P 223 (297)
T d1d7oa_ 164 LPIMNPGGASISLTYIASERIIPG--------------------YGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISA 223 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSCCTT--------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHHhhcCCcceeeeehhhcccccc--------------------cccceecccccccccccccchhccccceEEeccccc
Confidence 5542 235666666533322211 1144999999888776665443 5899999999
Q ss_pred CCccCCCCCCCCchhHHHHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcC
Q 020608 190 GTVMGPVIPPTLNASMLMLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLCVEA 254 (323)
Q Consensus 190 ~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~ 254 (323)
|.+.++...... ..........+.-| -+ .+..++|+|.+++.++.... ..|+.+..+.
T Consensus 224 G~i~T~~~~~~~-~~~~~~~~~~~~~P----lg--R~~~peevA~~v~fL~S~~a~~itGq~i~vDG 283 (297)
T d1d7oa_ 224 GPLGSRAAKAIG-FIDTMIEYSYNNAP----IQ--KTLTADEVGNAAAFLVSPLASAITGATIYVDN 283 (297)
T ss_dssp CCCBCCCSSCCS-HHHHHHHHHHHHSS----SC--CCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ccccchhhhhcc-CCHHHHHHHHhCCC----CC--CCCCHHHHHHHHHHHhCchhcCCcCceEEECc
Confidence 999998754322 22223333333221 11 25679999999999996432 3566554433
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.74 E-value=1.9e-16 Score=132.17 Aligned_cols=214 Identities=16% Similarity=0.141 Sum_probs=134.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-CCCCCeEEEEccCCCH----hHHHHH------
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-GADTRLRLFQIDLLDY----DAIAAA------ 74 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~----~~~~~~------ 74 (323)
.++|||||++.||++++++|+++|++|++.+|+.++.. .+..+++. ...........|+.+. +.+.++
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAA-QRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR 80 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH-HHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHH-HHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999754321 12222222 1234566666666542 333333
Q ss_pred -hcCCCEEEEcccCCccCCCC---------------CchhhhhhHHHHHHHHHHHHHhhC---------CcCEEEEeccc
Q 020608 75 -VTGCTGVFHLASPCIVDKVE---------------DPQNQLLNPAVKGTVNVLTAAKAL---------GVKRVVVTSSI 129 (323)
Q Consensus 75 -~~~~d~Vih~a~~~~~~~~~---------------~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~v~~SS~ 129 (323)
+.++|++||+||........ ..+...+..|+.+........... ....++.+||.
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (266)
T d1mxha_ 81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence 33789999999975432110 112334455555555555554221 22467777776
Q ss_pred ccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHH
Q 020608 130 SSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASML 206 (323)
Q Consensus 130 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~ 206 (323)
......+.. ..|+.||...+.+.+.++.+ +|++++.|.||.+..|.... ..
T Consensus 161 ~~~~~~~~~---------------------~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~-----~~ 214 (266)
T d1mxha_ 161 MTDLPLPGF---------------------CVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP-----QE 214 (266)
T ss_dssp GGGSCCTTC---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC-----HH
T ss_pred cccccCcch---------------------hhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC-----HH
Confidence 544433321 34999999999999998876 48999999999998775432 12
Q ss_pred HHHHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 207 MLLRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 207 ~~~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
....+.+..+ .+ +.+..++|+|.+++.++.... ..|+.+.
T Consensus 215 ~~~~~~~~~p--l~---r~~~~peeva~~v~fL~s~~s~~itG~~i~ 256 (266)
T d1mxha_ 215 TQEEYRRKVP--LG---QSEASAAQIADAIAFLVSKDAGYITGTTLK 256 (266)
T ss_dssp HHHHHHTTCT--TT---SCCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred HHHHHHhcCC--CC---CCCCCHHHHHHHHHHHhCchhCCccCCeEE
Confidence 3333333322 11 113579999999999997543 3566443
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.74 E-value=5.4e-17 Score=135.72 Aligned_cols=219 Identities=13% Similarity=0.073 Sum_probs=138.4
Q ss_pred CCCceEEEecccc--HHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc----
Q 020608 3 KEAEVVCVTGGSG--CIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT---- 76 (323)
Q Consensus 3 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 76 (323)
|++|++|||||+| +||.+++++|+++|++|++..|+.. ...+...+ ..+.+...+.+|+++.++.+++++
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~--~~~~~~~~--~~~~~~~~~~~dv~~~~~~~~~~~~v~~ 79 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL--RLIQRITD--RLPAKAPLLELDVQNEEHLASLAGRVTE 79 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH--HHHHHHHT--TSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH--HHHHHHHH--HcCCceeeEeeecccccccccccchhhh
Confidence 6899999999654 6999999999999999999988742 22222222 123467788999999877665533
Q ss_pred ------CCCEEEEcccCCccCC---------CCCchhhhhhHHHHHHHHHHHHHhhCC-cCEEEEecccccccCCCCCCC
Q 020608 77 ------GCTGVFHLASPCIVDK---------VEDPQNQLLNPAVKGTVNVLTAAKALG-VKRVVVTSSISSITPSPKWPA 140 (323)
Q Consensus 77 ------~~d~Vih~a~~~~~~~---------~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~ 140 (323)
.+|+++|+|+...... ....+...+.+|+.........+.... ....++++|.+.....+.
T Consensus 80 ~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~p~--- 156 (268)
T d2h7ma1 80 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPA--- 156 (268)
T ss_dssp HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCTT---
T ss_pred ccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccCcc---
Confidence 4699999999653211 123344556677777776776665442 234455554433333221
Q ss_pred CccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHhC---CccEEEEcCCCccCCCCC-----CCCchh---H-HHH
Q 020608 141 DKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKEK---GLDVVVVNPGTVMGPVIP-----PTLNAS---M-LML 208 (323)
Q Consensus 141 ~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~Rp~~v~G~~~~-----~~~~~~---~-~~~ 208 (323)
...|+.+|.+.+.+++.++.+. |++++.|.||.+-++... ...... . ...
T Consensus 157 ------------------~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 218 (268)
T d2h7ma1 157 ------------------YNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLE 218 (268)
T ss_dssp ------------------THHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred ------------------cchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHH
Confidence 1349999999999999888764 899999999999765311 001000 0 111
Q ss_pred HHHHcCCCCCccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEE
Q 020608 209 LRLLQGCTDTYENFFMGSVHFKDVALAHILVYENPS--ACGRHLC 251 (323)
Q Consensus 209 ~~~~~g~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 251 (323)
.......|. .+.+..++|+|+++..++.... ..|+.+.
T Consensus 219 ~~~~~~~pl-----~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~ 258 (268)
T d2h7ma1 219 EGWDQRAPI-----GWNMKDATPVAKTVCALLSDWLPATTGDIIY 258 (268)
T ss_dssp HHHHHHCTT-----CCCTTCCHHHHHHHHHHHSSSCTTCCSEEEE
T ss_pred HHHHhcCCC-----CCCCCCHHHHHHHHHHHhCchhcCccCCEEE
Confidence 111111111 1124568999999999996433 3556443
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.69 E-value=8.5e-16 Score=131.91 Aligned_cols=170 Identities=9% Similarity=0.060 Sum_probs=116.0
Q ss_pred CceEEEec--cccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHh--hc-----cCC---CCCeEEEEc---------
Q 020608 5 AEVVCVTG--GSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLK--AL-----EGA---DTRLRLFQI--------- 63 (323)
Q Consensus 5 ~~~vlItG--atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~--~~-----~~~---~~~~~~~~~--------- 63 (323)
+|.+|||| ++..||+++++.|+++|.+|++..++........... .. ... ........+
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence 57899999 5679999999999999999999887643222111111 00 000 011223333
Q ss_pred -----------cCCCHhHHHHH-------hcCCCEEEEcccCCcc------CCCCCchhhhhhHHHHHHHHHHHHHhhC-
Q 020608 64 -----------DLLDYDAIAAA-------VTGCTGVFHLASPCIV------DKVEDPQNQLLNPAVKGTVNVLTAAKAL- 118 (323)
Q Consensus 64 -----------Dl~~~~~~~~~-------~~~~d~Vih~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~- 118 (323)
|+.+.+.++++ +.++|++||+||.... ..+.++|...+++|+.+...+++++...
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m 161 (329)
T d1uh5a_ 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence 44444444433 3478999999986532 1134568889999999999999998654
Q ss_pred -CcCEEEEecccccccCCCCCCCCccccCCCCCChhhhccCCCchHHHHHHHHHHHHHHHHh----CCccEEEEcCCCcc
Q 020608 119 -GVKRVVVTSSISSITPSPKWPADKVKDEDCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE----KGLDVVVVNPGTVM 193 (323)
Q Consensus 119 -~~~~~v~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~Rp~~v~ 193 (323)
.-+++|.+||.++..+.+.+ ...|+.+|...+.+++.++.+ +|++++.|.||.|-
T Consensus 162 ~~~GsIv~iss~~~~~~~p~y--------------------~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~ 221 (329)
T d1uh5a_ 162 KPQSSIISLTYHASQKVVPGY--------------------GGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLK 221 (329)
T ss_dssp EEEEEEEEEECGGGTSCCTTC--------------------TTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_pred ccccccccceeehhccccccc--------------------chhhhhhhccccccchhhHHHHhcccCcEEEEEecCccc
Confidence 23589999988655443221 134999999999988887754 48999999999987
Q ss_pred C
Q 020608 194 G 194 (323)
Q Consensus 194 G 194 (323)
.
T Consensus 222 T 222 (329)
T d1uh5a_ 222 S 222 (329)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.67 E-value=1.6e-15 Score=125.75 Aligned_cols=218 Identities=14% Similarity=0.096 Sum_probs=128.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHh--------c
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAV--------T 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--------~ 76 (323)
||.||||||++.||++++++|+++|++|++++|+..+ ...|+.+.+...... .
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~-------------------~~~d~~~~~~~~~~~~~~~~~~~~ 61 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-------------------VIADLSTAEGRKQAIADVLAKCSK 61 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS-------------------EECCTTSHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH-------------------HHHHhcCHHHHHHHHHHHHHHhCC
Confidence 6899999999999999999999999999999986421 256777765544332 2
Q ss_pred CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHH----hhCCcCEEEEecccccccCCCCCCCCccccC------
Q 020608 77 GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAA----KALGVKRVVVTSSISSITPSPKWPADKVKDE------ 146 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~e------ 146 (323)
.+|+++|+|+... ..+.+.....+|..+...+.+.. .+........+++...........+......
T Consensus 62 ~id~lv~~Ag~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 138 (257)
T d1fjha_ 62 GMDGLVLCAGLGP---QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAK 138 (257)
T ss_dssp CCSEEEECCCCCT---TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHH
T ss_pred CCcEEEEcCCCCC---cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEE
Confidence 5799999998642 24455667778888877777664 3334456666666533322110000000000
Q ss_pred ------CCCCChhhhccCCCchHHHHHHHHHHHHHHHHh---CCccEEEEcCCCccCCCCCCCCchhHHHHHHHHcCCCC
Q 020608 147 ------DCWTDEEYCRQNEIWYPLSKTLAEKAAWEFAKE---KGLDVVVVNPGTVMGPVIPPTLNASMLMLLRLLQGCTD 217 (323)
Q Consensus 147 ------~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~Rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 217 (323)
.....+ ....|+.+|.+.+.+.+.++.+ +|++++.|.||.+-+|........ ........+..
T Consensus 139 i~s~~~~~~~~~-----~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~-~~~~~~~~~~~-- 210 (257)
T d1fjha_ 139 ARAIVEHAGEQG-----GNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQD-PRYGESIAKFV-- 210 (257)
T ss_dssp HHHHHHTCCTTH-----HHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC----------------------CC--
T ss_pred EeeehhccCCCc-----chHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCC-HHHHHHHHhcC--
Confidence 000000 0124999999999999988766 489999999999988764321110 01111111111
Q ss_pred CccCcCCCcccHHHHHHHHHHhhcCCC--CCccEEEEcCc
Q 020608 218 TYENFFMGSVHFKDVALAHILVYENPS--ACGRHLCVEAI 255 (323)
Q Consensus 218 ~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~~ 255 (323)
.|.+ .+..++|+|.++..++.... -.|+.+..++.
T Consensus 211 -~Plg--R~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 211 -PPMG--RRAEPSEMASVIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp -CSTT--SCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred -CCCC--CCcCHHHHHHHHHHHhCchhCCccCceEEeCCC
Confidence 1222 25688999999999986443 35665544433
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.50 E-value=7.2e-15 Score=115.94 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=74.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++++|+|+||||+|+||+.+++.|+++|++|++++|+.++.... .+++.. ..+..+..+|+++.+++++++.++|+|
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~--~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~iDil 96 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAA--ADSVNK-RFKVNVTAAETADDASRAEAVKGAHFV 96 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH--HHHHHH-HHTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHH--HHHHHh-ccchhhhhhhcccHHHHHHHhcCcCee
Confidence 57899999999999999999999999999999999986433222 222211 124556889999999999999999999
Q ss_pred EEcccCCccCCCCCchhhhhhHHH
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAV 105 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~ 105 (323)
||+|+........+.+...+++|+
T Consensus 97 in~Ag~g~~~~~~e~~~~~~~~nv 120 (191)
T d1luaa1 97 FTAGAIGLELLPQAAWQNESSIEI 120 (191)
T ss_dssp EECCCTTCCCBCHHHHHTCTTCCE
T ss_pred eecCccccccCCHHHHHhhhccee
Confidence 999986432223333444444443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.63 E-value=4.4e-07 Score=65.86 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=56.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 84 (323)
|+|+|.|+ |.+|+.+++.|.+.|++|+++.++++. .+.+... .+...+.||.+|++.++++ ++++|.++-+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~---~~~~~~~----~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDI---CKKASAE----IDALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHH----CSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhh---hhhhhhh----hhhhhccCcccchhhhhhcChhhhhhhccc
Confidence 68999997 999999999999999999999886422 2222211 1567899999999999887 5688988876
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 73 t 73 (132)
T d1lssa_ 73 T 73 (132)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.53 E-value=3.4e-07 Score=67.24 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=76.6
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
||.|+||+|.+|+.++..|+.+|. ++++++.++. ..+.+ .+..... +.....-+ ...+..+.++++|+||.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~---~~~a~-Dl~~~~~-~~~~~~~~-~~~~~~~~~~~aDivVit 75 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT---PGVAA-DLSHIET-RATVKGYL-GPEQLPDCLKGCDVVVIP 75 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH---HHHHH-HHTTSSS-SCEEEEEE-SGGGHHHHHTTCSEEEEC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecccc---chhhH-HHhhhhh-hcCCCeEE-cCCChHHHhCCCCEEEEC
Confidence 899999999999999999998884 7888876542 22222 2221111 11111112 234566778999999999
Q ss_pred ccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 85 ASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
||...- ...+-.+.++.|+.-.+.+++.+.+++.+.++.+-|
T Consensus 76 ag~~~~--~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 76 AGVPRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp CSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CCcCCC--CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 986432 223456688999999999999999887554444443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.49 E-value=1.7e-06 Score=63.39 Aligned_cols=115 Identities=13% Similarity=0.060 Sum_probs=75.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHH---Hhh-ccCCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAH---LKA-LEGADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
|||.|+||+|.+|+.++..|+.+| .++.+++++++....... +.. ........+....--.+.+ .++++|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~----~l~~aD 76 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR----IIDESD 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG----GGTTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH----Hhccce
Confidence 589999999999999999999998 489988876432211111 111 1111223333222111222 467899
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEe
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 126 (323)
+||-+||.... ...+-.+.++.|..-.+.+.+...+++-+.++.+
T Consensus 77 vVVitAG~~~~--~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 77 VVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp EEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EEEEecccccC--CCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 99999986422 2234556889999999999999988875555544
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.42 E-value=1.1e-06 Score=64.52 Aligned_cols=114 Identities=10% Similarity=0.114 Sum_probs=72.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHH--hhccCCCCCeEEEEccCCCHhHHHHHhcCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHL--KALEGADTRLRLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (323)
+.|||.|+|+ |++|+.++..|+.+| .+|++++++...... +.+ ..............+|. + .++++|
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g-~a~Dl~~a~~~~~~~~~~~~d~---~----~~~~ad 74 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKG-DALDLEDAQAFTAPKKIYSGEY---S----DCKDAD 74 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH-HHHHHHGGGGGSCCCEEEECCG---G----GGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHH-HHHHHhccccccCCceEeeccH---H----Hhcccc
Confidence 4569999995 999999999999987 589999876422211 111 11111122344556664 2 257899
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
+|+.+|+....+ ...-.+.+..|+.-.+.+.+...+++.+.++.+-|
T Consensus 75 ivvitag~~~~~--g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 75 LVVITAGAPQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp EEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEEecccccCC--CCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 999999864332 23345677889999999999999888665555444
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.37 E-value=9.4e-07 Score=67.58 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=56.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
.|+|+|.|| |++|+++++.|.++|++|++++|+..... . +............+..+.......+...|.++.+
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~---~---l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 74 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAK---K---LSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL 74 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHH---H---HHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHH---H---HHhcccccccccccccchhhhHhhhhccceeEee
Confidence 589999987 99999999999999999999999753222 2 2222234555667777777888888888888866
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 75 ~ 75 (182)
T d1e5qa1 75 I 75 (182)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.30 E-value=7.4e-06 Score=59.60 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=73.6
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHhhcc---CCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLKALE---GADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
||.|+||+|.+|+.++..|+.++. ++.+++..............+. ..........+|. ++ ++++|+|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~~----~~~aDiV 74 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---ED----TAGSDVV 74 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---GG----GTTCSEE
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---HH----hhhcCEE
Confidence 799999999999999999999985 7888765321111111111221 1233445455553 22 5689999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEE
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVV 125 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 125 (323)
+-+||...- ...+-.+.++.|..-.+.+.+...+++.+.++.
T Consensus 75 vitaG~~~~--~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~i 116 (142)
T d1o6za1 75 VITAGIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISL 116 (142)
T ss_dssp EECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEE
T ss_pred EEecccccc--cCCchhhHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 999986432 223456788999999999999998887554433
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.26 E-value=1.2e-05 Score=59.59 Aligned_cols=120 Identities=21% Similarity=0.111 Sum_probs=77.4
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHh--hc-cCCCCCeEEEEccCCCHhHHHHHhcC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLK--AL-EGADTRLRLFQIDLLDYDAIAAAVTG 77 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~--~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (323)
..+.+||.|+|+ |.+|+.++..|+..+. ++++++.+++.... ...+ +. ............ .+.++.+++
T Consensus 4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g-~a~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~ 76 (154)
T d1pzga1 4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEG-KALDLSHVTSVVDTNVSVRAE-----YSYEAALTG 76 (154)
T ss_dssp CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHH-HHHHHHHHHHHTTCCCCEEEE-----CSHHHHHTT
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchh-HHHHHhhhccccCCeeEEecc-----CchhhhhcC
Confidence 346679999997 9999999998888884 88888877643222 1111 11 000111111111 124566789
Q ss_pred CCEEEEcccCCccCCC---CCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 78 CTGVFHLASPCIVDKV---EDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 78 ~d~Vih~a~~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
+|+|+-+|+....+.. ...-.+.+..|..-...+++.+.+++.+-++.+-|
T Consensus 77 adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 77 ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999999987543321 12345678889999999999998887665555444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.23 E-value=9.4e-06 Score=59.67 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=74.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHH--hhc-cCCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHL--KAL-EGADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~--~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
.++||.|+|+ |++|+.++..|+.+|. ++.+++++++.... +.+ .+. ...........+|. +.++++
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g-~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~da 75 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIG-DAMDFNHGKVFAPKPVDIWHGDY-------DDCRDA 75 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH-HHHHHHHHTTSSSSCCEEEECCG-------GGTTTC
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccc-hhccHhhCccccCCCeEEEECCH-------HHhccc
Confidence 4578999996 9999999999999875 89988876432111 111 111 11122344445553 236789
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEec
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTS 127 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 127 (323)
|+||.+|+.... ....-.+.+..|..-.+.+.+...+++.+ .++.+|
T Consensus 76 Dvvvitag~~~~--~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 76 DLVVICAGANQK--PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp SEEEECCSCCCC--TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred eeEEEecccccc--cCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 999999986433 22334567788999999999998887644 444443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=1.5e-05 Score=58.27 Aligned_cols=114 Identities=17% Similarity=0.004 Sum_probs=73.0
Q ss_pred ceEEEeccccHHHHHHHHHHHH-CC--CEEEEEecCCCcHHHHHHHhhccCCCCCe-EEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLE-RR--YTVHATVKNLSDERETAHLKALEGADTRL-RLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~-~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|||.|+|++|.+|+.++..|.. .+ .++..++..+ .. .-+. ..+.+..... ......-.+ ++ .+++.|+|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~-~g~a-~Dl~h~~~~~~~~~~~~~~~---~~-~~~~aDvv 73 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VT-PGVA-VDLSHIPTAVKIKGFSGEDA---TP-ALEGADVV 73 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-TH-HHHH-HHHHTSCSSCEEEEECSSCC---HH-HHTTCSEE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cc-hhHH-HHHHCCccccCCcEEEcCCC---cc-ccCCCCEE
Confidence 6899999999999999998864 34 6888887643 22 1122 2222211111 111222223 22 46789999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
|.+||...- ...+-.+.++.|..-.+.+.+...+++.+ .++.+|.
T Consensus 74 vitaG~~~k--~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 74 LISAGVRRK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp EECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EECCCccCC--CCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 999997432 22344568899999999999999888644 4555554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=2.1e-05 Score=56.71 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=55.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 84 (323)
|+++|.|+ |-+|+++++.|.+.|++|+++..++ +..+ ++.. .....+.+|.++++.++++ ++++|.||-+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~---~~~~---~~~~--~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINE---EKVN---AYAS--YATHAVIANATEENELLSLGIRNFEYVIVA 71 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCH---HHHH---HTTT--TCSEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcH---HHHH---HHHH--hCCcceeeecccchhhhccCCccccEEEEE
Confidence 67889986 9999999999999999999998754 2222 2222 2557788999999999887 6788988766
Q ss_pred cc
Q 020608 85 AS 86 (323)
Q Consensus 85 a~ 86 (323)
.+
T Consensus 72 ~~ 73 (134)
T d2hmva1 72 IG 73 (134)
T ss_dssp CC
T ss_pred cC
Confidence 53
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.13 E-value=1.5e-05 Score=59.03 Aligned_cols=121 Identities=17% Similarity=0.064 Sum_probs=72.5
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCC----E-EEE-EecCCCcHHHHHHH-hhccCC-CCCeEEEEccCCCHhHHH
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRY----T-VHA-TVKNLSDERETAHL-KALEGA-DTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~----~-V~~-~~r~~~~~~~~~~~-~~~~~~-~~~~~~~~~Dl~~~~~~~ 72 (323)
|+ +.+||.|+||+|++|++++..|++.+. + +.. +..........+.. ..+... ......+...- ...
T Consensus 1 m~-~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 75 (154)
T d1y7ta1 1 MK-APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATD----DPK 75 (154)
T ss_dssp CC-CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEES----CHH
T ss_pred CC-CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCC----chh
Confidence 44 567999999999999999999998652 1 111 11111122221111 112211 12233333321 234
Q ss_pred HHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc--CEEEEecc
Q 020608 73 AAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV--KRVVVTSS 128 (323)
Q Consensus 73 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~v~~SS 128 (323)
+.++++|+||-+||...- ...+-.+.+..|+.-.+.+.....++.. ..++.+|.
T Consensus 76 ~~~~~advViitaG~~~~--pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 76 VAFKDADYALLVGAAPRK--AGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp HHTTTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred hhcccccEEEeecCcCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 567899999999987432 2334566888999999999999887532 24555553
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=1.4e-05 Score=61.12 Aligned_cols=84 Identities=11% Similarity=0.024 Sum_probs=64.4
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHH-hhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHL-KALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
+++++|+|.|+ |+.|++++..|++.|. +++++.|+++..+....+ +.+.. .........|+.+.+.+...+..+|+
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~di 93 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE-NTDCVVTVTDLADQQAFAEALASADI 93 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHH-HSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHh-hcCcceEeeecccccchhhhhcccce
Confidence 46899999996 8999999999999986 788999987665543332 22221 11344567889999999988999999
Q ss_pred EEEcccCC
Q 020608 81 VFHLASPC 88 (323)
Q Consensus 81 Vih~a~~~ 88 (323)
|||+....
T Consensus 94 iIN~Tp~G 101 (182)
T d1vi2a1 94 LTNGTKVG 101 (182)
T ss_dssp EEECSSTT
T ss_pred eccccCCc
Confidence 99998654
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=98.05 E-value=6e-05 Score=56.76 Aligned_cols=115 Identities=15% Similarity=0.026 Sum_probs=71.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC---C----EEEEEecCCCcHHHHHHHhhccCC-CCCeE-EEEccCCCHhHHHHHhc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR---Y----TVHATVKNLSDERETAHLKALEGA-DTRLR-LFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g---~----~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~-~~~~Dl~~~~~~~~~~~ 76 (323)
-||.||||+|.||++++-.|++.+ . .+..++..............+.+. .+... .+.++ +..+.++
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~-----~~~~~~~ 99 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGI-----DPYEVFE 99 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEES-----CHHHHTT
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccc-----cchhhcc
Confidence 479999999999999999999753 1 344444332111111111122221 12222 22222 2456688
Q ss_pred CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc--CEEEEec
Q 020608 77 GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV--KRVVVTS 127 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~v~~S 127 (323)
++|+||-+||... .......+.++.|..-...+.++..++.. -+++.+|
T Consensus 100 ~aDvVvi~ag~~r--kpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 100 DVDWALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp TCSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CCceEEEeeccCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 9999999998742 23445567889999999999999988632 2566665
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.03 E-value=3.2e-05 Score=56.45 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=71.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHh---hccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLK---ALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|||.|+|+ |.+|+.++-.|+.+| .++++++++...... +.++ .............+|. + .++++|+
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g-~~~Dl~~a~~~~~~~~~~~~~d~---~----~l~~adi 72 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKA-DQIDFQDAMANLEAHGNIVINDW---A----ALADADV 72 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH-HHHHHHHHGGGSSSCCEEEESCG---G----GGTTCSE
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhh-HHHhhhccccccCCccceeccCH---H----HhccccE
Confidence 78999995 999999999999887 388888775432111 1111 1112222334444443 2 2578999
Q ss_pred EEEcccCCccCCC--CCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 81 VFHLASPCIVDKV--EDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 81 Vih~a~~~~~~~~--~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
||-+||....... ..+-.+.++.|..-...+.+..++++.+.++.+-|
T Consensus 73 VVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999986432111 11224567789999999999998887554444433
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.00 E-value=4.9e-05 Score=55.23 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=69.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHH-HHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERE-TAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+||.|+|+ |.+|+.++-.|+.++. ++.+++++.+.... ..-+.+............+| .+ .++++|+|+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~~----~~~~adivv 73 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---YS----DVKDCDVIV 73 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---GG----GGTTCSEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---HH----HhCCCceEE
Confidence 58899997 9999999999999975 89999887643221 11111111112233333333 22 367899999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEe
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 126 (323)
-+||.... ........+..|+.-...+++...+++.+.++.+
T Consensus 74 itag~~~~--~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~iv 115 (142)
T d1y6ja1 74 VTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 115 (142)
T ss_dssp ECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred EecccccC--cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEE
Confidence 99986432 2334566888999999999999988875544443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.00 E-value=1.3e-05 Score=59.39 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=37.1
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (323)
|+..|++|.|+||.|.+|+.+++.|.+.||+|.+.+|+...
T Consensus 5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~ 45 (152)
T d2pv7a2 5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA 45 (152)
T ss_dssp SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc
Confidence 56678999999999999999999999999999999987643
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.00 E-value=2.4e-06 Score=66.31 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=32.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
|||.|+||+|.+|++|++.|+++||+|++.+|+++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 57899999999999999999999999999999754
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.99 E-value=4.5e-05 Score=55.35 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=73.4
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHhhc--cCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLKAL--EGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|||.|+|+ |.+|+.++..|+.++ .++.++++++.... .+.++-. ...........+|. + .++++|+|
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~-g~~~Dl~~~~~~~~~~~~~~~~~---~----~~~~adiv 71 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAE-GDALDLIHGTPFTRRANIYAGDY---A----DLKGSDVV 71 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHH-HHHHHHHHHGGGSCCCEEEECCG---G----GGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeccccccc-chhccccccccccccccccCCcH---H----HhcCCCEE
Confidence 68999996 999999999999887 48998887642221 1222211 11122344444443 2 26789999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
+-+|+....+ ...-.+.+..|..-.+.+.+...+++.+.++.+-|
T Consensus 72 vitag~~~~~--g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 72 IVAAGVPQKP--GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp EECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEecccccCC--CcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 9999874332 23345677889999999999988887555555433
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.98 E-value=0.0001 Score=54.41 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=74.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHh--hcc-CCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLK--ALE-GADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~--~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
+.+||.|+|+ |.+|+.++-.|+.+|. ++++++++++... .+.++ +.. ..........+|. + .++++
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~-g~alDl~h~~~~~~~~~~~~~~d~---~----~~~~a 89 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLK-GEMMDLQHGSLFLQTPKIVADKDY---S----VTANS 89 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH-HHHHHHHHTGGGCCCSEEEECSSG---G----GGTTC
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhH-HHHHHHhccccccCCCeEEeccch---h----hcccc
Confidence 4579999996 9999999999999986 8998887642221 12211 111 1122222233443 2 26689
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEecc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSS 128 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 128 (323)
|+|+.+||....+ ..+-.+.++.|+.-.+.+....++.+.+ -++++|-
T Consensus 90 diVVitAg~~~~~--g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 90 KIVVVTAGVRQQE--GESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp SEEEECCSCCCCT--TCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred cEEEEecCCcccc--CcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9999999975332 2344568889999999999998887755 4444443
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.92 E-value=0.00012 Score=53.16 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=71.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHH--hhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHL--KALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
.||.|+|+ |.+|+.++..|+.+|. +++++++++.... .+.+ .+.............+ +.+ .++++|+|
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~-g~a~Dl~~a~~~~~~~~i~~~~--~~~----~~~daDvV 73 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVE-AEVLDMQHGSSFYPTVSIDGSD--DPE----ICRDADMV 73 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHH-HHHHHHHHTGGGSTTCEEEEES--CGG----GGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccch-hHHHHHHhccccCCCceeecCC--CHH----HhhCCcEE
Confidence 58999996 9999999999999985 8998887642221 1111 1111111222332222 222 25678999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEe
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 126 (323)
|-+||.... ....-.+.++.|..-...+.....+++.+.++.+
T Consensus 74 VitaG~~~~--~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~iv 116 (143)
T d1llda1 74 VITAGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYML 116 (143)
T ss_dssp EECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEecccccC--CCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEE
Confidence 999987432 2234456888999999999999888875444433
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.92 E-value=0.0001 Score=53.55 Aligned_cols=111 Identities=13% Similarity=0.000 Sum_probs=72.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCCCcHHHHHHHh--hc-cCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNLSDERETAHLK--AL-EGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~--~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
|||.|+|+ |.+|+.++..|+..| .++.++++++...... .++ .. ........+... .+.+ .++++|+
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~-~~d~~~~~~~~~~~~~i~~~--~~~~----~~~dadv 72 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGK-ALDMYESGPVGLFDTKVTGS--NDYA----DTANSDI 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHH-HHHHHTTHHHHTCCCEEEEE--SCGG----GGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhh-hhhhhcccchhcccceEEec--CCHH----HhcCCeE
Confidence 58999996 999999999999987 4899998876543322 221 11 111123333322 2222 3678999
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEe
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 126 (323)
|+-+||.... ....-...++.|..-...+.+...+++.+-++.+
T Consensus 73 vvitag~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aiviv 116 (142)
T d1guza1 73 VIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116 (142)
T ss_dssp EEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred EEEEEecCCC--CCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 9999986432 2223456788899999999999888775544443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.84 E-value=0.00014 Score=52.74 Aligned_cols=112 Identities=10% Similarity=-0.004 Sum_probs=72.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHh--h-ccCCCCCeEEE-EccCCCHhHHHHHhcCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLK--A-LEGADTRLRLF-QIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~--~-~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d 79 (323)
|||.|+|+ |.+|+.++..|+.+|. ++.+++++++... .+.++ + ........... ..|. + .++++|
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~-g~alDl~~~~~~~~~~~~i~~~~d~---~----~~~~ad 71 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAV-GEAMDLAHAAAGIDKYPKIVGGADY---S----LLKGSE 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHH-HHHHHHHHHHHTTTCCCEEEEESCG---G----GGTTCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhh-HHHHHHhhhccccCCCCccccCCCH---H----Hhcccc
Confidence 68999996 9999999999998873 7998887642221 11111 1 11111122222 2343 2 467899
Q ss_pred EEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 80 GVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 80 ~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
+||-.|+.... ....-.+.+..|..-...+.+...+++.+.++.+-|
T Consensus 72 iVvitag~~~~--~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 72 IIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp EEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred EEEEeccccCC--CCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 99999986433 233456788889999999999998887555544444
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.83 E-value=1.2e-05 Score=59.83 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+++++|||.|+ |-+|..+++.|...|. ++++..|+..+.. ....++ +.+ ..+.+++.+.+.++|+|
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~--~l~~~~-----~~~-----~~~~~~~~~~l~~~Div 88 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAV--ELARDL-----GGE-----AVRFDELVDHLARSDVV 88 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHH--HHHHHH-----TCE-----ECCGGGHHHHHHTCSEE
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHH--HHHHhh-----hcc-----cccchhHHHHhccCCEE
Confidence 57899999997 9999999999999997 6888888643322 222222 112 23445677888999999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|.+.+.
T Consensus 89 i~atss 94 (159)
T d1gpja2 89 VSATAA 94 (159)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 999864
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.82 E-value=7.8e-05 Score=55.08 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=71.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCCCcHHHHHHHh--hcc-CCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNLSDERETAHLK--ALE-GADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~--~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
+..||.|+|+ |.+|+.++..|+..|. ++++++++.+... .+.++ +.. ..+........|. + .++++
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~-g~alDl~~~~~~~~~~~~~~~~d~---~----~~~~a 88 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLR-GEALDLQHGSLFLSTPKIVFGKDY---N----VSANS 88 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHH-HHHHHHHHTTTTCSCCEEEEESSG---G----GGTTE
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhh-ccHHHHhCcchhcCCCeEEeccch---h----hhccc
Confidence 4468999996 9999999999999885 8998877642211 11111 111 1122223333443 2 25678
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEec
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTS 127 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 127 (323)
|+||-+||....+. ..-.+.++.|+.-.+.+.....+.+.+ .++.+|
T Consensus 89 divvitag~~~~~~--~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 89 KLVIITAGARMVSG--QTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp EEEEECCSCCCCTT--TCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred cEEEEecccccCCC--CCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 99999998754332 333457888999999998888777644 444444
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.81 E-value=1.4e-05 Score=61.00 Aligned_cols=80 Identities=18% Similarity=0.050 Sum_probs=50.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
.|||.|+|+ |-+|..++..|.++|++|.+++|++...+............+.............++.+.++++|+||-+
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 389999997 9999999999999999999999864322221111111111111222222222223467788899999987
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 80 v 80 (184)
T d1bg6a2 80 V 80 (184)
T ss_dssp S
T ss_pred E
Confidence 5
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=6.9e-05 Score=54.55 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=43.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC----CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR----YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
||+|.|.||||++|+.+++.|+++. .+++.+.++........ ..... ....++.+.+ .++++|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~------~~~~~--~~~~~~~~~~----~~~~~Di 68 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS------FGGTT--GTLQDAFDLE----ALKALDI 68 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG------GGTCC--CBCEETTCHH----HHHTCSE
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc------ccCCc--eeeecccchh----hhhcCcE
Confidence 5799999999999999999888763 36776665543211100 00001 1122233322 3568999
Q ss_pred EEEccc
Q 020608 81 VFHLAS 86 (323)
Q Consensus 81 Vih~a~ 86 (323)
+|-+++
T Consensus 69 vF~a~~ 74 (146)
T d1t4ba1 69 IVTCQG 74 (146)
T ss_dssp EEECSC
T ss_pred EEEecC
Confidence 999885
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.79 E-value=4.1e-05 Score=58.37 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=53.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 81 (323)
++.+|||+||+|.+|+.+++-....|.+|++++|++ ++.+.++++ +....+..-|-...+.+.+... ++|+|
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~---~~~~~~~~~---Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v 102 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD---EKIAYLKQI---GFDAAFNYKTVNSLEEALKKASPDGYDCY 102 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH---HHHHHHHHT---TCSEEEETTSCSCHHHHHHHHCTTCEEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCH---HHHHHHHhh---hhhhhcccccccHHHHHHHHhhcCCCcee
Confidence 468999999999999999999999999999998863 333444443 2222233333333344433333 68999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|++.|.
T Consensus 103 ~D~vG~ 108 (182)
T d1v3va2 103 FDNVGG 108 (182)
T ss_dssp EESSCH
T ss_pred EEecCc
Confidence 999863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.77 E-value=3e-05 Score=58.49 Aligned_cols=74 Identities=20% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+.+|||+||+|.+|...++.+...|.+|+++++++++. +.++++. .+.. .|..+........+++|+||.
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~---~~~~~lG---a~~~---i~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL---ALPLALG---AEEA---ATYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS---HHHHHTT---CSEE---EEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEEeccccchhhhhhhhccccccccccccccccc---ccccccc---ccee---eehhhhhhhhhcccccccccc
Confidence 567899999999999999999999999999998865332 3333331 1111 243343333334568999999
Q ss_pred ccc
Q 020608 84 LAS 86 (323)
Q Consensus 84 ~a~ 86 (323)
+.|
T Consensus 98 ~~G 100 (171)
T d1iz0a2 98 VRG 100 (171)
T ss_dssp CSC
T ss_pred ccc
Confidence 875
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.76 E-value=2.5e-05 Score=57.81 Aligned_cols=117 Identities=18% Similarity=-0.006 Sum_probs=69.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-------EEEEEecCCCcHHHHHHHh-hccC-CCCCeEEEEccCCCHhHHHHH
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-------TVHATVKNLSDERETAHLK-ALEG-ADTRLRLFQIDLLDYDAIAAA 74 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~~~~~~~~~ 74 (323)
+.+||.|+||+|.+|++++-.|++.+. ++..++.+. .....+.+. .+.. .......+..-- +..+.
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~ 76 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP-MMGVLDGVLMELQDCALPLLKDVIATD----KEEIA 76 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG-GHHHHHHHHHHHHHTCCTTEEEEEEES----CHHHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCcc-chhhhhhhhhhhcccccccccccccCc----ccccc
Confidence 568999999999999999999986531 344443332 222222221 1111 111222222211 23456
Q ss_pred hcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhC-CcC-EEEEec
Q 020608 75 VTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKAL-GVK-RVVVTS 127 (323)
Q Consensus 75 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~S 127 (323)
++++|+||-+||....+. ..-.+.++.|..-.+.+.....++ +-. .++.+|
T Consensus 77 ~~~~dvVVitag~~~~~g--~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 77 FKDLDVAILVGSMPRRDG--MERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp TTTCSEEEECCSCCCCTT--CCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cCCceEEEEecccCCCCC--CchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 789999999998753322 233457788999999999987664 322 445555
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.75 E-value=0.0004 Score=48.11 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=64.0
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
.+++++|+|.|+ |-+|..-++.|++.|.+|++++....+.. ....+ ..++++...+..+.+ +.+++.|
T Consensus 9 ~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~~~-~~~~~-----~~~i~~~~~~~~~~d-----l~~~~lv 76 (113)
T d1pjqa1 9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIPQF-TVWAN-----EGMLTLVEGPFDETL-----LDSCWLA 76 (113)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCHHH-HHHHT-----TTSCEEEESSCCGGG-----GTTCSEE
T ss_pred EeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCChHH-HHHHh-----cCCceeeccCCCHHH-----hCCCcEE
Confidence 468999999996 99999999999999999999876553222 12221 235677776665433 5677888
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
+.+.+. . .-...+...|++.+ .+|++..
T Consensus 77 ~~at~d--------~---------~~n~~i~~~a~~~~--ilVNv~D 104 (113)
T d1pjqa1 77 IAATDD--------D---------TVNQRVSDAAESRR--IFCNVVD 104 (113)
T ss_dssp EECCSC--------H---------HHHHHHHHHHHHTT--CEEEETT
T ss_pred eecCCC--------H---------HHHHHHHHHHHHcC--CEEEeCC
Confidence 766432 1 11235667787775 4666544
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=4.9e-05 Score=59.73 Aligned_cols=76 Identities=14% Similarity=0.065 Sum_probs=54.8
Q ss_pred CCCCceEEEecc----------------ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccC
Q 020608 2 SKEAEVVCVTGG----------------SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL 65 (323)
Q Consensus 2 ~~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 65 (323)
++++|+||||+| ||-+|.+|++++..+|++|+++.-..+.. .+..+..+. +
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~-----------~p~~~~~~~--~ 69 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP-----------TPPFVKRVD--V 69 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC-----------CCTTEEEEE--C
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC-----------cccccccce--e
Confidence 478999999986 79999999999999999999986543211 122444433 3
Q ss_pred CCHhHH----HHHhcCCCEEEEcccCCcc
Q 020608 66 LDYDAI----AAAVTGCTGVFHLASPCIV 90 (323)
Q Consensus 66 ~~~~~~----~~~~~~~d~Vih~a~~~~~ 90 (323)
...+++ .+.+...|++|++|+...+
T Consensus 70 ~t~~~m~~~~~~~~~~~D~~i~aAAvsDf 98 (223)
T d1u7za_ 70 MTALEMEAAVNASVQQQNIFIGCAAVADY 98 (223)
T ss_dssp CSHHHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred hhhHHHHHHHHhhhccceeEeeeechhhh
Confidence 343333 3445688999999998765
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.74 E-value=7.5e-06 Score=62.92 Aligned_cols=81 Identities=14% Similarity=0.074 Sum_probs=51.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
|.|+||.|.|| |-.|++++..|+++|++|.+..|+++..........-....+++. +.-++.-..+++++++++|+||
T Consensus 5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~-l~~~i~~t~~l~~a~~~ad~ii 82 (189)
T d1n1ea2 5 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQ-LASNITFTSDVEKAYNGAEIIL 82 (189)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCB-CCTTEEEESCHHHHHTTCSCEE
T ss_pred ceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccc-cccccccchhhhhccCCCCEEE
Confidence 46788999995 999999999999999999999886432222111111001111221 1122222235778889999998
Q ss_pred Ecc
Q 020608 83 HLA 85 (323)
Q Consensus 83 h~a 85 (323)
-+.
T Consensus 83 iav 85 (189)
T d1n1ea2 83 FVI 85 (189)
T ss_dssp ECS
T ss_pred EcC
Confidence 765
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=2.4e-05 Score=50.08 Aligned_cols=39 Identities=36% Similarity=0.403 Sum_probs=34.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcH
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE 42 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 42 (323)
++++|||+||+|.+|+..++.+...|++|+++.+++++.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~ 69 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH 69 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHH
Confidence 457899999999999999998888999999998876443
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=0.00012 Score=50.45 Aligned_cols=67 Identities=21% Similarity=0.129 Sum_probs=53.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 82 (323)
..||.|.|| |.+|+-++.+..+.|++|++++.+++.+.. + .--+++.+|+.|.+.+.++.. ++|+|-
T Consensus 11 ~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~-----~-----va~~~i~~~~~d~~~l~~~~~~~~~DviT 79 (111)
T d1kjqa2 11 ATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM-----H-----VAHRSHVINMLDGDALRRVVELEKPHYIV 79 (111)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG-----G-----GSSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchh-----h-----cCCeEEECCCCCHHHHHHHHHhhCCceEE
Confidence 468999995 999999999999999999999887654332 1 123678899999999988774 578883
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=7e-05 Score=56.53 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH---hc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA---VT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~--~~ 78 (323)
++.+|||+||+|.+|...++.+...|.+|+++++++ ++.+.++++. .. + ..|.++.+..+++ .. ++
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~---~~~~~~~~~G---a~-~--vi~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE---EGQKIVLQNG---AH-E--VFNHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH---HHHHHHHHTT---CS-E--EEETTSTTHHHHHHHHHCTTCE
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccc---cccccccccC---cc-c--ccccccccHHHHhhhhhccCCc
Confidence 467999999999999999999999999999998753 3334444432 11 1 2355554443333 22 58
Q ss_pred CEEEEccc
Q 020608 79 TGVFHLAS 86 (323)
Q Consensus 79 d~Vih~a~ 86 (323)
|+|+.+.+
T Consensus 99 d~v~d~~g 106 (174)
T d1yb5a2 99 DIIIEMLA 106 (174)
T ss_dssp EEEEESCH
T ss_pred eEEeeccc
Confidence 99999875
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.65 E-value=0.00023 Score=51.55 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=68.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhcc---CCCCCeEEE-EccCCCHhHHHHHhcCCCE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALE---GADTRLRLF-QIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~ 80 (323)
+||.|+|+ |.+|+.++..|+.++. ++++++.+++.... +.++-.. .......+. ..|. + .+.+.|+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~-~~~Dl~~~~~~~~~~~~i~~~~d~---~----~~~~adv 72 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQG-KALDLYEASPIEGFDVRVTGTNNY---A----DTANSDV 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHH-HHHHHHTTHHHHTCCCCEEEESCG---G----GGTTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchh-HHHHhhccccccCCCCEEEecCcH---H----HhcCCCE
Confidence 68999996 9999999999998874 88888876643222 2222110 001122221 2333 2 2567899
Q ss_pred EEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 81 VFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 81 Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
||-+||...-+ .....+.++.|..-...++....+++.+.++.+-|
T Consensus 73 vvitag~~~~~--~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 73 IVVTSGAPRKP--GMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp EEECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred EEEeeeccCCc--CcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 99999864322 22334577889999999999998887555554433
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=0.00023 Score=52.36 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=57.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 84 (323)
.+|+|.|. |-+|..+++.|.+.|++|+++..+++.. ....+... ..++.++.||.+|++.++++ +++++.||-+
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~--~~~~~~~~--~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDD--IKQLEQRL--GDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHH--HHHHHHHH--CTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhH--HHHHHHhh--cCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 47899996 9999999999999999999998765321 12222221 23789999999999998775 5578988877
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 79 ~ 79 (153)
T d1id1a_ 79 S 79 (153)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.62 E-value=0.00039 Score=50.69 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=72.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHh--hcc-CCCCCeEEEEccCCCHhHHHHHhcCCCE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLK--ALE-GADTRLRLFQIDLLDYDAIAAAVTGCTG 80 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~--~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (323)
.+||.|+|+ |.+|+.++..|+..+. ++.++++++..... +.++ +.. ...........+ +. +.++++|+
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g-~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~adv 74 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHG-KALDTSHTNVMAYSNCKVSGSN--TY----DDLAGADV 74 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHH-HHHHHHTHHHHHTCCCCEEEEC--CG----GGGTTCSE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCccee-eecchhhhccccCCCcEEEecc--cc----cccCCCcE
Confidence 468999995 9999999988888774 88888887643222 2111 110 001122222221 22 23568899
Q ss_pred EEEcccCCccCCCC---CchhhhhhHHHHHHHHHHHHHhhCCcCEEEEec
Q 020608 81 VFHLASPCIVDKVE---DPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTS 127 (323)
Q Consensus 81 Vih~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 127 (323)
|+-+|+....+... ..-...+..|..-.+.+.+..++++.+.++.+-
T Consensus 75 vvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivv 124 (150)
T d1t2da1 75 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVV 124 (150)
T ss_dssp EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred EEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99999975443211 234567889999999999999888755544443
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.58 E-value=9.3e-05 Score=53.85 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=27.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC---EEEEEec
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY---TVHATVK 37 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~r 37 (323)
+.++|.|.||||++|+.|++.|.+++| ++..+..
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s 37 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS 37 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence 357999999999999999999987654 6766643
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.53 E-value=0.00011 Score=55.85 Aligned_cols=74 Identities=19% Similarity=0.111 Sum_probs=50.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhH---HHHHh--cCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDA---IAAAV--TGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~--~~~ 78 (323)
++.+|||+||+|.+|..+++.+...|.+|+++++++ +..+.+++. +.... .|..+.+- +.+.. +++
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~---~~~~~l~~~---Ga~~v---i~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD---AKREMLSRL---GVEYV---GDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH---HHHHHHHTT---CCSEE---EETTCSTHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccc---ccccccccc---ccccc---ccCCccCHHHHHHHHhCCCCE
Confidence 467999999999999999999988999999998753 233444443 22221 23344333 33333 368
Q ss_pred CEEEEccc
Q 020608 79 TGVFHLAS 86 (323)
Q Consensus 79 d~Vih~a~ 86 (323)
|+||.+.+
T Consensus 96 d~v~d~~g 103 (183)
T d1pqwa_ 96 DVVLNSLA 103 (183)
T ss_dssp EEEEECCC
T ss_pred EEEEeccc
Confidence 99999986
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.52 E-value=8.5e-05 Score=55.51 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=29.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
|||.|.|. |.+|+.+++.|.+.|++|++.+|++
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCc
Confidence 57999985 9999999999999999999998864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.52 E-value=0.0011 Score=49.47 Aligned_cols=76 Identities=18% Similarity=0.083 Sum_probs=49.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccC--CCHhHHHHHh-----c
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL--LDYDAIAAAV-----T 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~-----~ 76 (323)
.+.+|+|+| +|.||...+..+...|.+|+++++++ .+.+.++++. .+..+ ..|- .+.++..+.+ .
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~---~r~~~a~~~g---a~~~~-~~~~~~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSP---RRLEVAKNCG---ADVTL-VVDPAKEEESSIIERIRSAIGD 97 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHTT---CSEEE-ECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHH---HHHHHHHHcC---CcEEE-eccccccccchhhhhhhccccc
Confidence 467899997 69999999999989999999998854 3334444432 12222 2222 2333333333 2
Q ss_pred CCCEEEEcccC
Q 020608 77 GCTGVFHLASP 87 (323)
Q Consensus 77 ~~d~Vih~a~~ 87 (323)
++|+||.+++.
T Consensus 98 g~D~vid~~g~ 108 (170)
T d1e3ja2 98 LPNVTIDCSGN 108 (170)
T ss_dssp CCSEEEECSCC
T ss_pred CCceeeecCCC
Confidence 68999999874
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.52 E-value=6.4e-05 Score=57.12 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=51.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC-CCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG-ADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
|+|.|.|+ |-.|++++..|+++|++|.+..|..+. +..+....-.. ..........++.-.++++++++++|.||.+
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~-~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~a 78 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDT-EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLG 78 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGH-HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccH-HHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcc
Confidence 68999996 999999999999999999999885432 22222222111 0111111122333456788889999999886
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 79 v 79 (180)
T d1txga2 79 V 79 (180)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00013 Score=55.25 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=51.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH---hc--CC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA---VT--GC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~--~~ 78 (323)
.+.+|||+||+|.+|..+++-+...|.+|+++++++ ++.+.++++.. . + ..|.++.+..+++ -. ++
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~---~k~~~~~~lGa---~-~--vi~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA---QKAQSALKAGA---W-Q--VINYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH---HHHHHHHHHTC---S-E--EEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccch---HHHHHHHhcCC---e-E--EEECCCCCHHHHHHHHhCCCCe
Confidence 467999999999999999999999999999998864 33344444421 1 1 2355554433333 22 57
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+|+.+.+.
T Consensus 99 d~v~d~~g~ 107 (179)
T d1qora2 99 RVVYDSVGR 107 (179)
T ss_dssp EEEEECSCG
T ss_pred EEEEeCccH
Confidence 999999864
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.47 E-value=0.00015 Score=56.02 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=29.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
|||.|.| .|++|..++..|++.|++|++++.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 6799997 6999999999999999999999764
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.42 E-value=0.00014 Score=54.81 Aligned_cols=74 Identities=23% Similarity=0.269 Sum_probs=47.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH-hHHHHHh--cCCCEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY-DAIAAAV--TGCTGV 81 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~--~~~d~V 81 (323)
+.+|||+||+|.+|+..++-+...|.+|+++.+++.+.+.. .++. .+.. + |-.+. ++..... +++|+|
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~---~~lG---a~~v-i--~~~~~~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL---RVLG---AKEV-L--AREDVMAERIRPLDKQRWAAA 102 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH---HHTT---CSEE-E--ECC---------CCSCCEEEE
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH---Hhcc---ccee-e--ecchhHHHHHHHhhccCcCEE
Confidence 56899999999999999999999999999999876554433 3331 1221 1 22221 1111122 268999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|.+.+-
T Consensus 103 id~vgg 108 (176)
T d1xa0a2 103 VDPVGG 108 (176)
T ss_dssp EECSTT
T ss_pred EEcCCc
Confidence 999874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.39 E-value=0.0002 Score=53.54 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=50.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+.+|+|.|+ |.+|...+..+...|.+|+++++++.+.+. .+++. .+ +++. ...+.+..+...+++|+++.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~---a~~lG---a~-~~i~-~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKRED---AMKMG---AD-HYIA-TLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHH---HHHHT---CS-EEEE-GGGTSCHHHHSCSCEEEEEE
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHH---hhccC---Cc-EEee-ccchHHHHHhhhcccceEEE
Confidence 4679999986 999999988887889999999987654443 33331 11 2221 11233444555667899999
Q ss_pred cccC
Q 020608 84 LASP 87 (323)
Q Consensus 84 ~a~~ 87 (323)
+.+.
T Consensus 98 ~~~~ 101 (168)
T d1piwa2 98 CASS 101 (168)
T ss_dssp CCSC
T ss_pred EecC
Confidence 8764
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=97.35 E-value=5e-05 Score=56.88 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=34.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHH
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERE 44 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 44 (323)
+.+|||+||+|.+|+..++-....|.+|+++.++.++.+.
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~ 63 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADY 63 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHH
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHH
Confidence 4579999999999999998888889999999998655444
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.33 E-value=0.00011 Score=54.65 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=46.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
|++|.+.| .|-+|+.+++.|+++||+|.+.+|++.. .+.+.... .. .. ....++++.+|+|+-+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~---~~~~~~~~-----~~--~~-----~~~~e~~~~~diii~~ 64 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSA---VDGLVAAG-----AS--AA-----RSARDAVQGADVVISM 64 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHH---HHHHHHTT-----CE--EC-----SSHHHHHTSCSEEEEC
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhh---hhhhhhhh-----cc--cc-----chhhhhccccCeeeec
Confidence 57899998 6999999999999999999999886432 22222211 01 11 2345677888988877
Q ss_pred cc
Q 020608 85 AS 86 (323)
Q Consensus 85 a~ 86 (323)
-.
T Consensus 65 v~ 66 (162)
T d3cuma2 65 LP 66 (162)
T ss_dssp CS
T ss_pred cc
Confidence 63
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=0.00018 Score=53.57 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=31.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
|||+|+|+ |.||+.++..|++.|++|.++.|++.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 68999997 99999999999999999999999764
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.00099 Score=49.72 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=49.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
.++|+|+|.|+ |+.+++++..|.+.|.+|+++.|+.++.+. ..+.+... ..+.. .++.+.+ ..++|+||
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~--l~~~~~~~-~~~~~--~~~~~~~-----~~~~dliI 84 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEE--LAKLFAHT-GSIQA--LSMDELE-----GHEFDLII 84 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHH--HHHHTGGG-SSEEE--CCSGGGT-----TCCCSEEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHH--HHHHHhhc-ccccc--ccccccc-----ccccceee
Confidence 46899999996 999999999999999999999887533322 22222211 12232 2222211 24689999
Q ss_pred EcccCCc
Q 020608 83 HLASPCI 89 (323)
Q Consensus 83 h~a~~~~ 89 (323)
|+.....
T Consensus 85 N~Tp~G~ 91 (170)
T d1nyta1 85 NATSSGI 91 (170)
T ss_dssp ECCSCGG
T ss_pred cccccCc
Confidence 9986543
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.20 E-value=0.0009 Score=48.39 Aligned_cols=94 Identities=18% Similarity=0.104 Sum_probs=53.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC----CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR----YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
|||.|.||||++|+.|++.|++.. .++..+..+...... ... ..+.. ...+..+. ..++++|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~------~~~-~~~~~-~~~~~~~~----~~~~~~Dvv 68 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPA------PNF-GKDAG-MLHDAFDI----ESLKQLDAV 68 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBC------CCS-SSCCC-BCEETTCH----HHHTTCSEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccc------ccc-CCcce-eeecccch----hhhccccEE
Confidence 579999999999999999988643 356655433221110 000 00100 11112222 336789999
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcC-EEEEeccc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVK-RVVVTSSI 129 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~ 129 (323)
|-+... .-+..+...+.+.+.+ .+|=.||.
T Consensus 69 F~alp~------------------~~s~~~~~~l~~~g~~~~VIDlSsd 99 (147)
T d1mb4a1 69 ITCQGG------------------SYTEKVYPALRQAGWKGYWIDAAST 99 (147)
T ss_dssp EECSCH------------------HHHHHHHHHHHHTTCCSEEEESSST
T ss_pred EEecCc------------------hHHHHHhHHHHHcCCceEEEeCCcc
Confidence 988743 1134566666666654 45555654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.00075 Score=50.28 Aligned_cols=74 Identities=19% Similarity=0.139 Sum_probs=53.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFH 83 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 83 (323)
.+.+|+|.|+ |.||...++.+...|.++++++++..+. +..+++. .. ...|..+.+......+++|++|.
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~---~~a~~lG-----ad-~~i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKR---EAAKALG-----AD-EVVNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGH---HHHHHHT-----CS-EEEETTCHHHHHTTTTCEEEEEE
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHH---HHHhccC-----Cc-EEEECchhhHHHHhcCCCceeee
Confidence 4678999986 8899999998888999999888765432 3333332 11 12456666666666678999999
Q ss_pred cccC
Q 020608 84 LASP 87 (323)
Q Consensus 84 ~a~~ 87 (323)
+.+.
T Consensus 100 ~~g~ 103 (168)
T d1uufa2 100 TVAA 103 (168)
T ss_dssp CCSS
T ss_pred eeec
Confidence 9874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.0071 Score=44.78 Aligned_cols=76 Identities=18% Similarity=0.083 Sum_probs=50.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----C
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-----G 77 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~ 77 (323)
.+.+|+|.|+ |.+|...+..+...|. +|+++++++ .+.+..+++. .. +.+..+-.+.....+.++ +
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~---~rl~~a~~~G---a~-~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSA---TRLSKAKEIG---AD-LVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH---HHHHHHHHTT---CS-EEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCH---HHHHHHHHhC---Cc-ccccccccccccccccccccCCCC
Confidence 4568999986 9999999999999998 798887753 3334444441 11 233344345444444332 6
Q ss_pred CCEEEEcccC
Q 020608 78 CTGVFHLASP 87 (323)
Q Consensus 78 ~d~Vih~a~~ 87 (323)
+|+||.+.|.
T Consensus 98 ~Dvvid~~G~ 107 (171)
T d1pl8a2 98 PEVTIECTGA 107 (171)
T ss_dssp CSEEEECSCC
T ss_pred ceEEEeccCC
Confidence 8999999874
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00015 Score=54.73 Aligned_cols=37 Identities=38% Similarity=0.412 Sum_probs=33.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcH
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDE 42 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 42 (323)
.+|||+||+|.+|+..++-....|.+|++++|++.+.
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~ 69 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH 69 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH
T ss_pred CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHH
Confidence 4899999999999999999999999999999876443
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.13 E-value=0.00021 Score=53.62 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=27.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC-CEEEEEec
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVK 37 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r 37 (323)
|+||.|.||||++|..|++.|.+.. .++..+.-
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s 34 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSS 34 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeec
Confidence 6899999999999999999998864 47766653
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.11 E-value=0.0012 Score=49.18 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=50.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
.++|+|+|.|+ |..++.++..|.+.+.+|+++.|+.++.+.. .+.+.. ...+.....|-.+ +..+|.||
T Consensus 16 ~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l--~~~~~~-~~~~~~~~~~~~~-------~~~~diiI 84 (171)
T d1p77a1 16 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKEL--AERFQP-YGNIQAVSMDSIP-------LQTYDLVI 84 (171)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHH--HHHHGG-GSCEEEEEGGGCC-------CSCCSEEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHH--HHHHhh-ccccchhhhcccc-------ccccceee
Confidence 46789999995 8899999999998888999999975433322 222211 1234444444221 45789999
Q ss_pred EcccCC
Q 020608 83 HLASPC 88 (323)
Q Consensus 83 h~a~~~ 88 (323)
++....
T Consensus 85 N~tp~g 90 (171)
T d1p77a1 85 NATSAG 90 (171)
T ss_dssp ECCCC-
T ss_pred eccccc
Confidence 998754
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=97.11 E-value=0.00058 Score=48.45 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=51.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH-hcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA-VTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 84 (323)
|+|+|.|. |-+|+.++++| ++++|+++..++..... ... .++.++.||.++++.++++ +++++.++-+
T Consensus 1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~~~---~~~-----~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~ 69 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVRKK---VLR-----SGANFVHGDPTRVSDLEKANVRGARAVIVN 69 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHHHH---HHH-----TTCEEEESCTTSHHHHHHTTCTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHHHH---HHh-----cCccccccccCCHHHHHHhhhhcCcEEEEe
Confidence 67899985 88999999999 46778888776543322 111 2688999999999988875 4578888865
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 70 ~ 70 (129)
T d2fy8a1 70 L 70 (129)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00091 Score=44.39 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=51.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
+.++|+|+|.|. |-.|..+++.|.+.|++|++.+.+...... +.+. ....+..+.. +. ..+.++|.|
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~----~~~~---~~~~~~~~~~-~~----~~~~~~d~v 68 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGL----DKLP---EAVERHTGSL-ND----EWLMAADLI 68 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTG----GGSC---TTSCEEESBC-CH----HHHHHCSEE
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhH----HHHh---hccceeeccc-ch----hhhccCCEE
Confidence 367899999997 889999999999999999999876543221 1111 2344445543 22 234567999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|-.-|.
T Consensus 69 i~SPGi 74 (93)
T d2jfga1 69 VASPGI 74 (93)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 998876
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.98 E-value=0.00026 Score=52.52 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=44.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|||-|.| .|.+|+.+++.|+++|++|++.+|+++.. +.+... .... . +..+++.+++|+||-|-
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~---~~~~~~-----~~~~--~-----~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAI---ADVIAA-----GAET--A-----STAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHH---HHHHHT-----TCEE--C-----SSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchh---HHHHHh-----hhhh--c-----ccHHHHHhCCCeEEEEc
Confidence 5799998 69999999999999999999998864322 222221 1111 1 12455667789998875
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.96 E-value=0.0032 Score=44.29 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=27.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHAT 35 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~ 35 (323)
|||.|.|++|-+|+.+++.+.++|+++++.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~ 30 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK 30 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence 579999999999999999999999988764
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.96 E-value=0.0015 Score=47.71 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=44.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|||-|+| .|.+|+.+++.|++.|++|++..|.++.... ...... ++ .. ...++++++|+||-+.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~-~~~~~~-----~~---~~------~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTI-ERARTV-----GV---TE------TSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHH-HHHHHH-----TC---EE------CCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHH-Hhhhcc-----cc---cc------cHHHHHhhcCeEEEEe
Confidence 5789997 6999999999999999999988876644332 221111 11 11 1345677899999775
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.94 E-value=0.0044 Score=46.28 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=50.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
+++|-++| .|-+|+.+++.|++.||+|++.+|++++.+....... . ... .......+++.+.+..+|.++-+
T Consensus 2 ~~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-~--~~~----~~~a~~~~~~~~~~~~~~~ii~~ 73 (176)
T d2pgda2 2 QADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA-K--GTK----VLGAHSLEEMVSKLKKPRRIILL 73 (176)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTT-T--TSS----CEECSSHHHHHHHBCSSCEEEEC
T ss_pred CCcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcc-c--ccc----ccchhhhhhhhhhhcccceEEEe
Confidence 46899999 5999999999999999999999997644332211100 0 000 01134566777888888998877
Q ss_pred c
Q 020608 85 A 85 (323)
Q Consensus 85 a 85 (323)
.
T Consensus 74 ~ 74 (176)
T d2pgda2 74 V 74 (176)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.0022 Score=48.32 Aligned_cols=76 Identities=9% Similarity=0.076 Sum_probs=48.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHH-H---HHhc--
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAI-A---AAVT-- 76 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~-~---~~~~-- 76 (323)
.+.+|||+|+ |.||...+..+...|. +|+++++++ .+.+.++++. .. ..+...=.+..+. + +...
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~---~~~~~a~~lG---a~-~vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSP---NRLKLAEEIG---AD-LTLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCH---HHHHHHHHTT---CS-EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccc---cccccccccc---ce-EEEeccccchHHHHHHHHHhhCCC
Confidence 4679999996 8999999999999997 799998854 3334444441 12 2222221232222 2 2222
Q ss_pred CCCEEEEcccC
Q 020608 77 GCTGVFHLASP 87 (323)
Q Consensus 77 ~~d~Vih~a~~ 87 (323)
++|+||.+.|.
T Consensus 100 g~Dvvid~vG~ 110 (182)
T d1vj0a2 100 GADFILEATGD 110 (182)
T ss_dssp CEEEEEECSSC
T ss_pred CceEEeecCCc
Confidence 58999999874
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.86 E-value=0.00066 Score=51.53 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=31.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
.++|.|.|+ |.+|+.++..++..|++|+++++++.
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 478999997 99999999999999999999988653
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.81 E-value=0.0014 Score=49.31 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=48.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+++|+|.|.| .|-||+.+++.|..-|.+|++.+|.+.. ++..-.++++++++.+|+|+
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~---------------------~~~~~~~~l~ell~~sDiv~ 97 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKE---------------------GPWRFTNSLEEALREARAAV 97 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCC---------------------SSSCCBSCSHHHHTTCSEEE
T ss_pred ccCceEEEec-cccccccceeeeeccccccccccccccc---------------------cceeeeechhhhhhccchhh
Confidence 5789999999 5999999999999999999999876422 11111234678899999998
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+...
T Consensus 98 ~~~pl 102 (181)
T d1qp8a1 98 CALPL 102 (181)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 77654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.80 E-value=0.0011 Score=46.45 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=31.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
..++++|.|| |++|..++..|.++|.+|+++.|.+
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~ 63 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQP 63 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccceEEEEeecc
Confidence 3579999996 9999999999999999999998865
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00087 Score=49.48 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=57.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+||.|.|++|-+|+.+++.+.+. +.++++..-++.......-..++......-..+.. +++.+++.+|+||
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~------~~~~~~~~~DViI 76 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQS------SLDAVKDDFDVFI 76 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEES------CSTTTTTSCSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeec------cHHHHhcccceEE
Confidence 4579999999999999999999886 66766554322111100000000000000011122 2344567889999
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
.+.-+ .++...++.|.+.++ .+|.=+|
T Consensus 77 DFs~p------------------~~~~~~~~~a~~~~~-~~ViGTT 103 (162)
T d1diha1 77 DFTRP------------------EGTLNHLAFCRQHGK-GMVIGTT 103 (162)
T ss_dssp ECSCH------------------HHHHHHHHHHHHTTC-EEEECCC
T ss_pred EeccH------------------HHHHHHHHHHHhccc-eeEEecC
Confidence 88632 245567888888874 5555443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.80 E-value=0.00097 Score=50.62 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=44.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh---HHHHHh-cCCCEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD---AIAAAV-TGCTGV 81 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~-~~~d~V 81 (323)
.+|||+||+|.+|+..++-....|.++++...+. +.......+.+.. + ...|.++.+ .+.++. +++|+|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-~e~~~~l~~~~ga---d---~vi~~~~~~~~~~~~~~~~~GvDvv 104 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-QEKCLFLTSELGF---D---AAVNYKTGNVAEQLREACPGGVDVY 104 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-HHHHHHHHHHSCC---S---EEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccch-HHHHhhhhhcccc---e---EEeeccchhHHHHHHHHhccCceEE
Confidence 6799999999999999999988998655443332 2222223333321 2 223444322 233322 268999
Q ss_pred EEccc
Q 020608 82 FHLAS 86 (323)
Q Consensus 82 ih~a~ 86 (323)
|.+.|
T Consensus 105 ~D~vG 109 (187)
T d1vj1a2 105 FDNVG 109 (187)
T ss_dssp EESSC
T ss_pred EecCC
Confidence 99986
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.79 E-value=0.0018 Score=48.12 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLS 40 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~ 40 (323)
++++|+|.|+ |+.|++++..|.+.|. +|.++.|+.+
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ 52 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVK 52 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHH
Confidence 5789999996 9999999999999996 7999988753
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.79 E-value=0.006 Score=42.92 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=59.4
Q ss_pred CCCceEEEeccc---cHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 3 KEAEVVCVTGGS---GCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 3 ~~~~~vlItGat---G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
+..++|.|.|+| +-.|..+.+.|.+.| ++|+.+...... +. +.. ..-++.+ +-..+
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~---------i~----G~~-~y~sl~d------lp~~v 65 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE---------VQ----GVK-AYKSVKD------IPDEI 65 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE---------ET----TEE-CBSSTTS------CSSCC
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc---------cC----CeE-eecchhh------cCCCC
Confidence 356899999999 999999999987766 689888432210 00 111 2233433 22467
Q ss_pred CEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 79 TGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 79 d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
|.++-+... ..+..+++.|.+.|++.++.+|+.
T Consensus 66 Dlvvi~vp~------------------~~~~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 66 DLAIIVVPK------------------RFVKDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp SEEEECSCH------------------HHHHHHHHHHHHHTCCEEEECCCS
T ss_pred ceEEEecCh------------------HHhHHHHHHHHHcCCCEEEEeccc
Confidence 888766531 234567888888889999998876
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.00078 Score=51.39 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=33.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
|+.++|.|.|+ |.+|+.++..++..|++|++.+++++
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence 46689999997 99999999999999999999988754
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.76 E-value=0.00064 Score=49.79 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=44.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEcc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
|||.+.| +|-+|+++++.|++.|++|++..|+.++.. +..++. ++. .. .+.+++++++|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~--~l~~~~-----g~~-----~~--~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSK--EIAEQL-----ALP-----YA--MSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHH--HHHHHH-----TCC-----BC--SSHHHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHH--hhcccc-----cee-----ee--chhhhhhhccceeeeec
Confidence 5789998 699999999999999999999988642222 211222 111 11 13456677899888664
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.75 E-value=0.0013 Score=46.17 Aligned_cols=35 Identities=23% Similarity=0.127 Sum_probs=31.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+.++|+|.|| |++|..++..|.+.|.+|+++.|.+
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence 4679999996 9999999999999999999998764
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.72 E-value=0.00088 Score=50.65 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=27.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCC-CEEEEEe
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERR-YTVHATV 36 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (323)
+..||.|.||||++|..|++.|.+.. .++..+.
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 45689999999999999999999875 4766654
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.71 E-value=0.00081 Score=50.69 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=27.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHC-CCEEEEEe
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLER-RYTVHATV 36 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~ 36 (323)
|+||.|.|||||+|..|++.|.+. ..++..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 689999999999999999999987 45776553
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.70 E-value=0.0017 Score=45.04 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=31.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.++++|.|| |++|..++..|.+.|.+|+++.|..
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~ 55 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAG 55 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECC-CccceeeeeeecccccEEEEEEecc
Confidence 479999996 9999999999999999999998765
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.68 E-value=0.0014 Score=50.06 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=47.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+++|.|.| .|-||+.+++.|..-|.+|++.++....... . +....+++.++++.+|+|+
T Consensus 41 l~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~----------------~~~~~~~l~~~l~~sDii~ 101 (197)
T d1j4aa1 41 VRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELE--K----------------KGYYVDSLDDLYKQADVIS 101 (197)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--H----------------TTCBCSCHHHHHHHCSEEE
T ss_pred ccCCeEEEec-ccccchhHHHhHhhhcccccccCcccccccc--c----------------ceeeecccccccccccccc
Confidence 4679999999 6999999999999999999998765432111 0 0111234667778888887
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+...
T Consensus 102 ~~~pl 106 (197)
T d1j4aa1 102 LHVPD 106 (197)
T ss_dssp ECSCC
T ss_pred ccCCc
Confidence 76644
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.68 E-value=0.0032 Score=46.67 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=48.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH-hHHHHHh--cCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY-DAIAAAV--TGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~--~~~d 79 (323)
.+.+|+|+|++|.+|...+..+...|. +|++..+++ .+.+.++++. .. +.+..+-.|. +.+.+.. .++|
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~---~~~~~~~~~G---a~-~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE---EAVEAAKRAG---AD-YVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH---HHHHHHHHHT---CS-EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccch---hhHHHHHHcC---Cc-eeeccCCcCHHHHHHHHhhcccch
Confidence 356899999999999999999988885 888887653 3334444432 12 2233332222 2222222 2589
Q ss_pred EEEEcccC
Q 020608 80 GVFHLASP 87 (323)
Q Consensus 80 ~Vih~a~~ 87 (323)
+||.+++.
T Consensus 100 ~vid~~g~ 107 (170)
T d1jvba2 100 AVIDLNNS 107 (170)
T ss_dssp EEEESCCC
T ss_pred hhhccccc
Confidence 99999874
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.65 E-value=0.0081 Score=44.79 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=30.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
|||-|+| .|-+|..+++.|++.||+|++.+|+++
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~ 35 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYS 35 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 6799998 799999999999999999999988653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.64 E-value=0.0049 Score=45.13 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=55.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
..+|+|.|+ |-.|..-++.....|.+|.+++++.... +.++.... ..++ .-..+.+.+++.++++|+||.+
T Consensus 32 pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l---~~l~~~~~--~~~~---~~~~~~~~l~~~~~~aDivI~a 102 (168)
T d1pjca1 32 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERL---SYLETLFG--SRVE---LLYSNSAEIETAVAEADLLIGA 102 (168)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHG--GGSE---EEECCHHHHHHHHHTCSEEEEC
T ss_pred CcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHH---HHHHHhhc--ccce---eehhhhhhHHHhhccCcEEEEe
Confidence 468999996 9999999999999999999999864332 33322211 1222 3345677889999999999999
Q ss_pred ccC
Q 020608 85 ASP 87 (323)
Q Consensus 85 a~~ 87 (323)
+-.
T Consensus 103 ali 105 (168)
T d1pjca1 103 VLV 105 (168)
T ss_dssp CCC
T ss_pred eec
Confidence 865
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.63 E-value=0.0021 Score=44.74 Aligned_cols=35 Identities=23% Similarity=0.074 Sum_probs=31.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
..++++|.|| |+||..++..|.+.|.+|+++.|..
T Consensus 21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence 3578999996 9999999999999999999998765
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.0021 Score=44.91 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=31.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.++++|.|| |+||..++..|.+.|.+|+++.|.+
T Consensus 23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence 579999996 9999999999999999999998754
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.52 E-value=0.0019 Score=51.15 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=32.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+.|||+|+|| |..|...+.+|+++|++|.++.|..
T Consensus 4 ~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 4 HSQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 35578999996 9999999999999999999998854
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.52 E-value=0.0016 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY 30 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~ 30 (323)
=||.|.||||++|..|++.|.+..+
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC
Confidence 4799999999999999999987754
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.50 E-value=0.0016 Score=45.14 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=31.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.++|+|.|| |++|..++..|.+.|.+|+++.|..
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence 578999996 9999999999999999999998864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.50 E-value=0.0013 Score=48.92 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=29.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~ 39 (323)
||+|+|.| .|.||..+++.|.+.|+ +|++.+|++
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 57899998 59999999999999996 678777653
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.0038 Score=45.59 Aligned_cols=68 Identities=13% Similarity=-0.006 Sum_probs=48.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|+++|.| .|.||+.+++.|...|.+|++..+.| ....+... .+++.. .+++++...|+||
T Consensus 22 l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp--~~al~A~~------dG~~v~--------~~~~a~~~adivv 84 (163)
T d1li4a1 22 IAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDP--INALQAAM------EGYEVT--------TMDEACQEGNIFV 84 (163)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH--HHHHHHHH------TTCEEC--------CHHHHTTTCSEEE
T ss_pred ecCCEEEEec-cccccHHHHHHHHhCCCeeEeeeccc--chhHHhhc------CceEee--------ehhhhhhhccEEE
Confidence 5789999999 89999999999999999999997653 22222221 122221 2566677788888
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
-+.+.
T Consensus 85 taTGn 89 (163)
T d1li4a1 85 TTTGC 89 (163)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 88764
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.002 Score=44.58 Aligned_cols=34 Identities=26% Similarity=0.164 Sum_probs=31.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.++|+|.|| |++|..++..|.+.|.+|+++.|.+
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence 478999996 9999999999999999999998865
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.46 E-value=0.0018 Score=45.30 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=30.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
++++|.|| |++|..++..|.+.|.+|+++.|.+
T Consensus 33 ~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence 68999996 9999999999999999999998765
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.0024 Score=44.82 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=31.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.|+++|.|| |+||..++..|.+.|.+|+++.|+.
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence 479999996 9999999999999999999998864
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.38 E-value=0.032 Score=36.72 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=47.5
Q ss_pred CCceEEEeccccHHH-HHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 4 EAEVVCVTGGSGCIG-SWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGatG~iG-~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.|+|.+.|- |.+| ++||+.|.++|++|.+-++..+.. .+.+... ++.+..++-. + .++++|.||
T Consensus 7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~--~~~L~~~-----Gi~v~~g~~~--~----~i~~~d~vV 72 (96)
T d1p3da1 7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVV--TQRLAQA-----GAKIYIGHAE--E----HIEGASVVV 72 (96)
T ss_dssp TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHH--HHHHHHT-----TCEEEESCCG--G----GGTTCSEEE
T ss_pred hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChh--hhHHHHC-----CCeEEECCcc--c----cCCCCCEEE
Confidence 5688999885 5555 778999999999999998864322 2333322 5555555432 2 235789999
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
...+.
T Consensus 73 ~S~AI 77 (96)
T d1p3da1 73 VSSAI 77 (96)
T ss_dssp ECTTS
T ss_pred ECCCc
Confidence 88876
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.34 E-value=0.0074 Score=44.43 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=45.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH---hHHHHHhcCCCE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY---DAIAAAVTGCTG 80 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~d~ 80 (323)
.+.+|+|.|+ |.+|...+..+...|.+|+++++++ .+.+..+++. .. +++ |..+. +.+.+...+.+.
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~---~~~~~a~~~G---a~-~~i--~~~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDD---AKLELARKLG---AS-LTV--NARQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHHTT---CS-EEE--ETTTSCHHHHHHHHHSSEEE
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchh---hHHHhhhccC---cc-ccc--cccchhHHHHHHHhhcCCcc
Confidence 4678999886 9999999998888999999998753 3333444431 12 222 33332 334444446666
Q ss_pred EEEccc
Q 020608 81 VFHLAS 86 (323)
Q Consensus 81 Vih~a~ 86 (323)
+|-+++
T Consensus 97 ~i~~~~ 102 (166)
T d1llua2 97 VLVTAV 102 (166)
T ss_dssp EEECCS
T ss_pred cccccc
Confidence 666554
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.32 E-value=0.002 Score=49.03 Aligned_cols=68 Identities=18% Similarity=0.102 Sum_probs=47.6
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+++|.|.| .|-||+.+++.|..-|.+|++.++......... .++...++++++++.+|+|+
T Consensus 47 L~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~----------------~~~~~~~~l~~ll~~sD~i~ 109 (193)
T d1mx3a1 47 IRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA----------------LGLQRVSTLQDLLFHSDCVT 109 (193)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH----------------HTCEECSSHHHHHHHCSEEE
T ss_pred eeCceEEEec-cccccccceeeeeccccceeeccCcccccchhh----------------hccccccchhhccccCCEEE
Confidence 5789999999 599999999999989999999987654322111 01111234666777788776
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+...
T Consensus 110 ~~~pl 114 (193)
T d1mx3a1 110 LHCGL 114 (193)
T ss_dssp ECCCC
T ss_pred Eeecc
Confidence 66543
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.32 E-value=0.003 Score=44.08 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=30.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
.++++|.|| |+||..++..|.+.|.+|+++.|+
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence 478999996 999999999999999999999875
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.32 E-value=0.0056 Score=45.63 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=46.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC-HhHHHHHh--cCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD-YDAIAAAV--TGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~--~~~d 79 (323)
.+.+|+|.|+ |.+|...+..+...|. +|+++++++.+. +..+++. ....+...|-.+ .+...+.. .++|
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~---~~a~~~G---a~~~i~~~~~~~~~~~~~~~~~~~G~D 100 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKF---AKAKEVG---ATECVNPQDYKKPIQEVLTEMSNGGVD 100 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH---HHHHHTT---CSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHH---HHHHHhC---CeeEEecCCchhHHHHHHHHHhcCCCC
Confidence 3578999998 6699999999999885 888887765333 3333321 121222223222 22222222 2789
Q ss_pred EEEEcccC
Q 020608 80 GVFHLASP 87 (323)
Q Consensus 80 ~Vih~a~~ 87 (323)
++|.+.+.
T Consensus 101 ~vid~~G~ 108 (176)
T d2jhfa2 101 FSFEVIGR 108 (176)
T ss_dssp EEEECSCC
T ss_pred EEEecCCc
Confidence 99999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.31 E-value=0.007 Score=45.06 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=47.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC---HhHHHHHhc--C
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD---YDAIAAAVT--G 77 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~~~~~~~~--~ 77 (323)
.+.+|+|.|+ |.||...+..+...|. +|+++++++ .+.+..+++.. . ++ .|..+ .+.+.+... +
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~---~r~~~a~~lGa---~-~~--i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP---ICVEAAKFYGA---T-DI--LNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH---HHHHHHHHHTC---S-EE--ECGGGSCHHHHHHHHTTTSC
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhcccccccccccchh---hhHHHHHhhCc---c-cc--ccccchhHHHHHHHHhhccC
Confidence 4678999986 9999999998888896 788887643 33344444421 1 22 23322 233444433 5
Q ss_pred CCEEEEcccC
Q 020608 78 CTGVFHLASP 87 (323)
Q Consensus 78 ~d~Vih~a~~ 87 (323)
+|+||.+++.
T Consensus 97 ~D~vid~~g~ 106 (174)
T d1jqba2 97 VDRVIMAGGG 106 (174)
T ss_dssp EEEEEECSSC
T ss_pred cceEEEccCC
Confidence 8999999975
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.28 E-value=0.0062 Score=45.43 Aligned_cols=82 Identities=10% Similarity=0.105 Sum_probs=47.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccC---CCCCe-EEEEccCCCHhHHHHHhcCCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEG---ADTRL-RLFQIDLLDYDAIAAAVTGCT 79 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~~~Dl~~~~~~~~~~~~~d 79 (323)
|-||.|-| .|-||+.+++.|.++ +.+|+++....+.......+..-.. ..... .+-...+.-...+..++.++|
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vD 79 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSD 79 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCC
Confidence 46899998 799999999999987 4788888755433333222211100 00000 000011111123455566899
Q ss_pred EEEEcccC
Q 020608 80 GVFHLASP 87 (323)
Q Consensus 80 ~Vih~a~~ 87 (323)
+|+-|.|.
T Consensus 80 iViecTG~ 87 (178)
T d1b7go1 80 IVVDTTPN 87 (178)
T ss_dssp EEEECCST
T ss_pred EEEECCCC
Confidence 99999975
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.27 E-value=0.0032 Score=44.71 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
..++|+|.|| |++|..++..|.+.|.+|+++.+.+
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeecc
Confidence 3689999996 9999999999999999999998764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.22 E-value=0.01 Score=44.04 Aligned_cols=82 Identities=15% Similarity=0.017 Sum_probs=52.4
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccC--CCC---CeE-------EEEccC--CCHhH
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEG--ADT---RLR-------LFQIDL--LDYDA 70 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~---~~~-------~~~~Dl--~~~~~ 70 (323)
.-+|+|.|| |-.|.+-++-....|.+|.+++.+....+..+.+-.-.- ... ..+ -...+. .+.+.
T Consensus 29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 358999996 999999999999999999999988765554443311000 000 000 000111 23455
Q ss_pred HHHHhcCCCEEEEcccC
Q 020608 71 IAAAVTGCTGVFHLASP 87 (323)
Q Consensus 71 ~~~~~~~~d~Vih~a~~ 87 (323)
+.+.+.++|.||-++-.
T Consensus 108 l~~~l~~aDlVI~tali 124 (183)
T d1l7da1 108 VLKELVKTDIAITTALI 124 (183)
T ss_dssp HHHHHTTCSEEEECCCC
T ss_pred HHHHHHhhhhheeeeec
Confidence 77778899999999865
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.21 E-value=0.0028 Score=43.76 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=30.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.++++|.|| |++|..++..|.+.|.+|+++.|.+
T Consensus 21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence 478999996 9999999999999999999998764
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.21 E-value=0.0056 Score=45.57 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=46.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH-hHHHHHhc-CCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY-DAIAAAVT-GCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~-~~d~V 81 (323)
.+.+|+|.|+ |.||...+..+...|.+++++... +..+.+.++++.. .+++..+-.|. +.+.++.. ++|+|
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~--~~~k~~~a~~~Ga----~~~i~~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDI--VESRLELAKQLGA----THVINSKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEES--CHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeecc--HHHHHHHHHHcCC----eEEEeCCCcCHHHHHHHHcCCCCcEE
Confidence 4568999997 999999999888888865544332 2334444444421 13333222222 22333322 58999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|.+.+.
T Consensus 101 id~~G~ 106 (174)
T d1f8fa2 101 LESTGS 106 (174)
T ss_dssp EECSCC
T ss_pred EEcCCc
Confidence 999874
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.013 Score=42.12 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=30.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 39 (323)
||+|.|.|+||-||.....-+.+. .++|.++.-+.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~ 37 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK 37 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 689999999999999999988876 47999887554
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0067 Score=44.38 Aligned_cols=58 Identities=16% Similarity=0.028 Sum_probs=45.7
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++++|+|+|.|.+..+|+.|+..|.++|..|+...... . ++.+..+++|+|
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t-----------------------~------~l~~~~~~ADiv 84 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-----------------------K------NLRHHVENADLL 84 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-----------------------S------CHHHHHHHCSEE
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccccc-----------------------c------hhHHHHhhhhHh
Confidence 35789999999999999999999999999998764321 1 234455677999
Q ss_pred EEcccCC
Q 020608 82 FHLASPC 88 (323)
Q Consensus 82 ih~a~~~ 88 (323)
|..+|..
T Consensus 85 I~a~G~p 91 (166)
T d1b0aa1 85 IVAVGKP 91 (166)
T ss_dssp EECSCCT
T ss_pred hhhccCc
Confidence 9998864
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.012 Score=46.40 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=61.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcH-----------------HHHHHHhhccCCCCCeEEEEccC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDE-----------------RETAHLKALEGADTRLRLFQIDL 65 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~Dl 65 (323)
+.++|+|.| .|.+|++++..|+..|. ++++++.+.-.. ......+.+....+.+.+...+.
T Consensus 29 ~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~ 107 (247)
T d1jw9b_ 29 KDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 107 (247)
T ss_dssp HHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence 457999999 59999999999999997 677765222111 11111122222234444333332
Q ss_pred -CCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 66 -LDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 66 -~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
.+.+.....+...|+|+.+... ......+.++|.+.++ .+|+.+..
T Consensus 108 ~~~~~~~~~~~~~~divid~~d~-----------------~~~~~~in~~~~~~~i-p~i~g~~~ 154 (247)
T d1jw9b_ 108 LLDDAELAALIAEHDLVLDCTDN-----------------VAVRNQLNAGCFAAKV-PLVSGAAI 154 (247)
T ss_dssp CCCHHHHHHHHHTSSEEEECCSS-----------------HHHHHHHHHHHHHHTC-CEEEEEEE
T ss_pred hhhhccccccccccceeeeccch-----------------hhhhhhHHHHHHHhCC-Cccccccc
Confidence 2344566677788999877521 1223345556777764 56664443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.17 E-value=0.0031 Score=45.93 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=29.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLS 40 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~ 40 (323)
|||.++|+ |-+|+++++.|++.| ++|++.+|+++
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~ 35 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAE 35 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence 58999985 999999999999887 89999988753
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.15 E-value=0.003 Score=47.80 Aligned_cols=79 Identities=10% Similarity=0.140 Sum_probs=48.7
Q ss_pred CceEEE-eccccHHHHHHHHHHHHCCCEEEEEecCCCcHH-HHHHHhhccCCCCCeEEEE--ccCCCH-hHHHHH----h
Q 020608 5 AEVVCV-TGGSGCIGSWLVSLLLERRYTVHATVKNLSDER-ETAHLKALEGADTRLRLFQ--IDLLDY-DAIAAA----V 75 (323)
Q Consensus 5 ~~~vlI-tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~--~Dl~~~-~~~~~~----~ 75 (323)
+.+++| +||+|.+|...++-....|.+|+++.|+.+..+ ..+.++++. ....+.. .|..+. +.+.+. -
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lG---ad~vi~~~~~~~~~~~~~v~~~~~~~g 105 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG---ATQVITEDQNNSREFGPTIKEWIKQSG 105 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHT---CSEEEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcc---ccEEEeccccchhHHHHHHHHHHhhcc
Confidence 456776 699999999999988888999999998765533 233444442 1222111 122221 112222 2
Q ss_pred cCCCEEEEccc
Q 020608 76 TGCTGVFHLAS 86 (323)
Q Consensus 76 ~~~d~Vih~a~ 86 (323)
.++|+|+++.+
T Consensus 106 ~~vdvv~D~vg 116 (189)
T d1gu7a2 106 GEAKLALNCVG 116 (189)
T ss_dssp CCEEEEEESSC
T ss_pred CCceEEEECCC
Confidence 36899999875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.14 E-value=0.0082 Score=44.65 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=46.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC--HhHHHHHh--cCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD--YDAIAAAV--TGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~--~~~ 78 (323)
.+.+|+|.|+ |.||...+..+...|. +|++.++++.+ .+..+++.. . +.+...-.+ ........ .++
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r---~~~a~~~Ga---~-~~i~~~~~~~~~~~~~~~~~~~G~ 99 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEK---FPKAKALGA---T-DCLNPRELDKPVQDVITELTAGGV 99 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG---HHHHHHTTC---S-EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHH---HHHHHHhCC---C-cccCCccchhhhhhhHhhhhcCCC
Confidence 4578999985 9999999999999997 57777665433 334444311 1 122211111 12222222 379
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||.++|.
T Consensus 100 d~vie~~G~ 108 (174)
T d1e3ia2 100 DYSLDCAGT 108 (174)
T ss_dssp SEEEESSCC
T ss_pred cEEEEeccc
Confidence 999999975
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.13 E-value=0.03 Score=36.27 Aligned_cols=68 Identities=18% Similarity=0.096 Sum_probs=45.8
Q ss_pred ceEEEeccccHHHH-HHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEEEc
Q 020608 6 EVVCVTGGSGCIGS-WLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVFHL 84 (323)
Q Consensus 6 ~~vlItGatG~iG~-~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 84 (323)
|||.++|- |.+|. .|++.|+++|++|.+-++..+ .....++.. ++.+..+. +.+. ++++|.||..
T Consensus 2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~--~~t~~L~~~-----Gi~i~~gh--~~~~----i~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEET--ERTAYLRKL-----GIPIFVPH--SADN----WYDPDLVIKT 67 (89)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHT-----TCCEESSC--CTTS----CCCCSEEEEC
T ss_pred cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCC--hhHHHHHHC-----CCeEEeee--cccc----cCCCCEEEEe
Confidence 68888886 55554 899999999999999987743 223344443 45544432 2221 3578999999
Q ss_pred ccC
Q 020608 85 ASP 87 (323)
Q Consensus 85 a~~ 87 (323)
.+.
T Consensus 68 sAI 70 (89)
T d1j6ua1 68 PAV 70 (89)
T ss_dssp TTC
T ss_pred cCc
Confidence 876
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.07 E-value=0.016 Score=42.90 Aligned_cols=76 Identities=11% Similarity=-0.003 Sum_probs=46.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC--HhHHHHHh--cCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD--YDAIAAAV--TGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~--~~~ 78 (323)
.+.+|+|.|+ |.+|...+..+...|. +|++++++..+ .+..+++.. . ..+...-.| .+...... .++
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~k---l~~a~~lGa---~-~~i~~~~~d~~~~~~~~~~~~~G~ 98 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDK---FPKAIELGA---T-ECLNPKDYDKPIYEVICEKTNGGV 98 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGG---HHHHHHTTC---S-EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHH---HHHHHHcCC---c-EEEcCCCchhHHHHHHHHhcCCCC
Confidence 4578999985 9999999999999996 78888775433 333344311 1 122111112 12222222 268
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||.+++.
T Consensus 99 d~vid~~g~ 107 (174)
T d1p0fa2 99 DYAVECAGR 107 (174)
T ss_dssp SEEEECSCC
T ss_pred cEEEEcCCC
Confidence 999999875
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.014 Score=42.86 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=45.5
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
++++|+|+|.|.+.-+|+.|+..|+++|..|+....... ++.+..++.|+|
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~-----------------------------~l~~~~~~aDiv 86 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA-----------------------------HLDEEVNKGDIL 86 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS-----------------------------SHHHHHTTCSEE
T ss_pred ccccceEEEEecCCccchHHHHHHHhccCceEEEecccc-----------------------------cHHHHHhhccch
Confidence 357999999999999999999999999999987644221 134456678888
Q ss_pred EEcccCC
Q 020608 82 FHLASPC 88 (323)
Q Consensus 82 ih~a~~~ 88 (323)
|..+|..
T Consensus 87 i~a~G~~ 93 (170)
T d1a4ia1 87 VVATGQP 93 (170)
T ss_dssp EECCCCT
T ss_pred hhccccc
Confidence 8888763
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.04 E-value=0.0073 Score=44.86 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=44.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEc-cC-CCHhHHHHHh--cCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQI-DL-LDYDAIAAAV--TGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl-~~~~~~~~~~--~~~ 78 (323)
.+.+|+|.|+ |.+|...+..+...|. .|++.++++ ++.+..+++.. . +.+.. +- .+.....+.. .++
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~---~k~~~ak~lGa---~-~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINK---DKFARAKEFGA---T-ECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG---GGHHHHHHHTC---S-EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccH---HHHHHHHHhCC---c-EEEeCCchhhHHHHHHHHHcCCCC
Confidence 4578999997 6789999999988896 566665543 22344444421 1 11211 11 1222222221 368
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||.+.|.
T Consensus 100 D~vid~~G~ 108 (176)
T d2fzwa2 100 DYSFECIGN 108 (176)
T ss_dssp SEEEECSCC
T ss_pred cEeeecCCC
Confidence 999999874
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.01 E-value=0.00048 Score=51.90 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=31.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCc
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSD 41 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (323)
+++|+|+|.|+ |+.++.++..|.+.| +|.++.|+.++
T Consensus 16 ~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~k 52 (177)
T d1nvta1 16 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEK 52 (177)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhH
Confidence 57899999995 889999999997766 89999887543
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.98 E-value=0.0053 Score=42.96 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=31.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.++++|.|| |+||..++..|.+.|.+|+++.|.+
T Consensus 26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence 578999996 9999999999999999999998754
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.97 E-value=0.0061 Score=42.25 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=31.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+++|+|.|| |++|..++..|.+.|.+|.++.|.+
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE 55 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence 3589999996 9999999999999999999998865
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.97 E-value=0.012 Score=43.81 Aligned_cols=77 Identities=10% Similarity=0.022 Sum_probs=49.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCC-HhHHHHHh--cCCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLD-YDAIAAAV--TGCT 79 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~--~~~d 79 (323)
.+.+|+|+|+ |.+|...+..+...|. +|+++++++.+ .+..+++.. ...+-.-|-.+ .+.+.+.. .++|
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~k---l~~Ak~~GA---~~~in~~~~~~~~~~~~~~~~g~G~d 101 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDK---FEKAMAVGA---TECISPKDSTKPISEVLSEMTGNNVG 101 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG---HHHHHHHTC---SEEECGGGCSSCHHHHHHHHHTSCCC
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHH---HHHHHhcCC---cEEECccccchHHHHHHHHhccccce
Confidence 3568999985 9999999999999995 89999876533 334444321 22221122222 22233333 3799
Q ss_pred EEEEcccC
Q 020608 80 GVFHLASP 87 (323)
Q Consensus 80 ~Vih~a~~ 87 (323)
+||.+.+.
T Consensus 102 ~vi~~~g~ 109 (176)
T d1d1ta2 102 YTFEVIGH 109 (176)
T ss_dssp EEEECSCC
T ss_pred EEEEeCCc
Confidence 99999875
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.97 E-value=0.0034 Score=43.86 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=31.3
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.++++|.|| |+||..++..|.+.|.+|+++.|++
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~ 58 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFAS 58 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcc
Confidence 578999996 9999999999999999999998865
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.93 E-value=0.0055 Score=46.08 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=46.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.++++.|.| .|.||+.+++.|..-|.+|++.++...+...... .+. ..+++++++.+|+|+
T Consensus 42 l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~---------~~~--------~~~l~ell~~sDiv~ 103 (184)
T d1ygya1 42 IFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL---------GIE--------LLSLDDLLARADFIS 103 (184)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHH---------TCE--------ECCHHHHHHHCSEEE
T ss_pred ccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHhhc---------Cce--------eccHHHHHhhCCEEE
Confidence 4678999999 5999999999999889999999876543222111 111 123567778888887
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
-+...
T Consensus 104 ~~~Pl 108 (184)
T d1ygya1 104 VHLPK 108 (184)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 66644
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.83 E-value=0.011 Score=44.54 Aligned_cols=68 Identities=21% Similarity=0.068 Sum_probs=46.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.++++.|.| .|-||+.+++.|..-|.+|.+.+|........... . +....+++++++.+|+|+
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-~--------------~~~~~~l~~~l~~sD~v~ 105 (188)
T d2naca1 42 LEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL-N--------------LTWHATREDMYPVCDVVT 105 (188)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH-T--------------CEECSSHHHHGGGCSEEE
T ss_pred ccccceeecc-ccccchhhhhhhhccCceEEEEeeccccccccccc-c--------------ccccCCHHHHHHhccchh
Confidence 4678999999 69999999999998899999998865443322211 0 111234556677777776
Q ss_pred Eccc
Q 020608 83 HLAS 86 (323)
Q Consensus 83 h~a~ 86 (323)
-+..
T Consensus 106 ~~~p 109 (188)
T d2naca1 106 LNCP 109 (188)
T ss_dssp ECSC
T ss_pred hccc
Confidence 5553
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.0038 Score=45.32 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
+++|+|||+|| |.+|..-++.|++.|.+|+++.-.
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899999997 999999999999999999999643
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.82 E-value=0.011 Score=44.54 Aligned_cols=69 Identities=12% Similarity=0.039 Sum_probs=47.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
++++++.|.| .|-||+.+++.|..-|.+|.+.++............ ....++++++++.+|+|+
T Consensus 45 l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~---------------~~~~~~l~~ll~~sD~v~ 108 (191)
T d1gdha1 45 LDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQ---------------ATFHDSLDSLLSVSQFFS 108 (191)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHT---------------CEECSSHHHHHHHCSEEE
T ss_pred ecccceEEee-cccchHHHHHHHHhhccccccccccccccchhhccc---------------ccccCCHHHHHhhCCeEE
Confidence 4679999999 599999999999989999999887654333221110 011124667778888886
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
-+...
T Consensus 109 l~~pl 113 (191)
T d1gdha1 109 LNAPS 113 (191)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 65543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.82 E-value=0.011 Score=44.98 Aligned_cols=69 Identities=23% Similarity=0.223 Sum_probs=46.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-CCCE
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-GCTG 80 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~ 80 (323)
++++++|.|-| .|-+|+++++.|.+.|.+|++.+.+. ......... +.+.+ +.+ +++. ++|+
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~---~~~~~~~~~-----g~~~~-----~~~---~~~~~~~DI 86 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDT---ERVAHAVAL-----GHTAV-----ALE---DVLSTPCDV 86 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH---HHHHHHHHT-----TCEEC-----CGG---GGGGCCCSE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchH---HHHHHHHhh-----ccccc-----Ccc---cccccccee
Confidence 47889999999 69999999999999999999876532 222222221 22221 222 2344 7899
Q ss_pred EEEcccC
Q 020608 81 VFHLASP 87 (323)
Q Consensus 81 Vih~a~~ 87 (323)
++-||..
T Consensus 87 ~iPcA~~ 93 (201)
T d1c1da1 87 FAPCAMG 93 (201)
T ss_dssp EEECSCS
T ss_pred eeccccc
Confidence 9988854
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.73 E-value=0.09 Score=38.60 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=47.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC-----------CHhHHHH
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL-----------DYDAIAA 73 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----------~~~~~~~ 73 (323)
+||.|-| .|-||+.+++.|.++. .+|+++....+.... ..+... ++..+..+-. ....+..
T Consensus 3 irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~~~-~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (172)
T d2czca2 3 VKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDFEA-YRAKEL-----GIPVYAASEEFIPRFEKEGFEVAGTLND 75 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSHHH-HHHHHT-----TCCEEESSGGGHHHHHHHTCCCSCBHHH
T ss_pred EEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCChHHH-HHhhhc-----CceeecccccceeeecccCccccchhhh
Confidence 7999999 5999999999998764 688887654323222 222221 1222222211 1123445
Q ss_pred HhcCCCEEEEcccC
Q 020608 74 AVTGCTGVFHLASP 87 (323)
Q Consensus 74 ~~~~~d~Vih~a~~ 87 (323)
+++++|+|+-|.|.
T Consensus 76 ~~~~vDvViEcTG~ 89 (172)
T d2czca2 76 LLEKVDIIVDATPG 89 (172)
T ss_dssp HHTTCSEEEECCST
T ss_pred hhccCCEEEECCCC
Confidence 56789999999986
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=95.64 E-value=0.031 Score=40.10 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=31.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 39 (323)
++|+|.|.|+||-||.....-+.+. .++|.++.-+.
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~ 38 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR 38 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence 4799999999999999999999875 58999987654
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0069 Score=38.19 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=31.0
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
||+|.|.|| |.+|+-++.+-.+.|++|.+++-.++
T Consensus 1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 589999995 99999999999999999999976543
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.58 E-value=0.0074 Score=49.58 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=31.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
++|+|+|.|| |+-|...|.+|++.|++|.++-++.
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4799999996 9999999999999999999997654
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.0098 Score=44.83 Aligned_cols=65 Identities=12% Similarity=-0.046 Sum_probs=46.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+++|.|.| .|.||+.+++.|..-|.+|++.++....... .. ...+.++++++.+|+|+
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~------------~~-------~~~~~l~ell~~sDii~ 101 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLG------------NA-------TQVQHLSDLLNMSDVVS 101 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCT------------TC-------EECSCHHHHHHHCSEEE
T ss_pred ccceEEEEee-cccchhhhhhhcccccceEeeccccccchhh------------hh-------hhhhhHHHHHhhcccee
Confidence 4678999998 6999999999999999999999765421110 11 11124677788889887
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
-++..
T Consensus 102 i~~pl 106 (188)
T d1sc6a1 102 LHVPE 106 (188)
T ss_dssp ECCCS
T ss_pred ecccC
Confidence 77654
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.56 E-value=0.022 Score=42.10 Aligned_cols=115 Identities=16% Similarity=0.025 Sum_probs=63.6
Q ss_pred CceEEEeccccHHHHH--HHHHHHHC----CCEEEEEecCCCcHHHHHH-Hhh-ccCCCCCeEEEEccCCCHhHHHHHhc
Q 020608 5 AEVVCVTGGSGCIGSW--LVSLLLER----RYTVHATVKNLSDERETAH-LKA-LEGADTRLRLFQIDLLDYDAIAAAVT 76 (323)
Q Consensus 5 ~~~vlItGatG~iG~~--l~~~L~~~----g~~V~~~~r~~~~~~~~~~-~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (323)
.|||.|.|| |.+|.. ++..|+.. +.+++.+++++...+.... ..+ ........++... .+..++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~-----td~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT-----MNLDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE-----SCHHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe-----CChhhccc
Confidence 479999996 888864 44445543 4599999887543322111 111 1111223332222 23566789
Q ss_pred CCCEEEEcccCCccCCCCCc------------------------hhhhhhHHHHHHHHHHHHHhhCCcCEEEE
Q 020608 77 GCTGVFHLASPCIVDKVEDP------------------------QNQLLNPAVKGTVNVLTAAKALGVKRVVV 125 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~------------------------~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 125 (323)
++|+|+.+++....+...++ -.....-|+.-.+.+++..++++.+.+++
T Consensus 76 dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i 148 (171)
T d1obba1 76 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYL 148 (171)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEE
Confidence 99999999875422110000 00012347788888888888877554433
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.032 Score=40.97 Aligned_cols=81 Identities=17% Similarity=0.031 Sum_probs=52.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccC--CCHhHHHHHhcCCC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDL--LDYDAIAAAVTGCT 79 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~~~~d 79 (323)
++++|+|+|.|-+.-+|+.|+..|+++|..|+........... ....+ .-......|+ ...+.+++....+|
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~lk~~~~~aD 99 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT--RGESL----KLNKHHVEDLGEYSEDLLKKCSLDSD 99 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE--SCCCS----SCCCCEEEEEEECCHHHHHHHHHHCS
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc--cccce----eeeeeccccccccchhHHhhccccCC
Confidence 3678999999999999999999999999999876433100000 00000 0001112222 24566888888899
Q ss_pred EEEEcccCC
Q 020608 80 GVFHLASPC 88 (323)
Q Consensus 80 ~Vih~a~~~ 88 (323)
+||..+|..
T Consensus 100 IvIsavG~p 108 (171)
T d1edza1 100 VVITGVPSE 108 (171)
T ss_dssp EEEECCCCT
T ss_pred EEEEccCCC
Confidence 999998764
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=95.49 E-value=0.0089 Score=45.50 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=46.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|+|.|.| .|-||+.+++.|..-|.+|++.++...... ...+. ..+++++++.+|+|+
T Consensus 43 l~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-----------~~~~~--------~~~l~~l~~~~D~v~ 102 (199)
T d1dxya1 43 LGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGD-----------HPDFD--------YVSLEDLFKQSDVID 102 (199)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSC-----------CTTCE--------ECCHHHHHHHCSEEE
T ss_pred ccceeeeeee-cccccccccccccccceeeeccCCccchhh-----------hcchh--------HHHHHHHHHhcccce
Confidence 4578999999 699999999999999999999987543211 01111 123667778889887
Q ss_pred EcccC
Q 020608 83 HLASP 87 (323)
Q Consensus 83 h~a~~ 87 (323)
.+...
T Consensus 103 ~~~pl 107 (199)
T d1dxya1 103 LHVPG 107 (199)
T ss_dssp ECCCC
T ss_pred eeecc
Confidence 76643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.47 E-value=0.015 Score=42.59 Aligned_cols=74 Identities=22% Similarity=0.111 Sum_probs=46.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCC-C-HhHHHHHhcCCCEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLL-D-YDAIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~-~~~~~~~~~~~d~V 81 (323)
.+.+|+|.|+ |-||...+..+...|.+|+++++++ ++.+..+++ +...+...-. + .+.+.+...+.+.+
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~---~r~~~~k~~-----Ga~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGD---EKLELAKEL-----GADLVVNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCH---HHHHHHHHT-----TCSEEECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCH---HHhhhhhhc-----CcceecccccchhhhhcccccCCCceE
Confidence 4678999875 9999999999989999999987753 333444443 2222222221 2 23355555667777
Q ss_pred EEccc
Q 020608 82 FHLAS 86 (323)
Q Consensus 82 ih~a~ 86 (323)
|-+++
T Consensus 98 v~~~~ 102 (168)
T d1rjwa2 98 VVTAV 102 (168)
T ss_dssp EESSC
T ss_pred EeecC
Confidence 76664
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.43 E-value=0.0068 Score=48.43 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=28.9
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
|+|+|| |.+|..++.+|+++|++|+++.+..
T Consensus 7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 999996 9999999999999999999998754
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.39 E-value=0.0053 Score=45.54 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKN 38 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~ 38 (323)
+..||.|.| +|.+|+..++.|.+. +.+++++...
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~ 36 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSR 36 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEES
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEec
Confidence 456899999 699999999999875 5787766543
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.37 E-value=0.22 Score=36.35 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=46.8
Q ss_pred CceEEEeccccHHHHHHHHHHHHCC-CEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEcc-----------CCCHhHHH
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERR-YTVHATVKNLSDERETAHLKALEGADTRLRLFQID-----------LLDYDAIA 72 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-----------l~~~~~~~ 72 (323)
|++|.|-| .|-||+.+++.|.+++ .+|+++....+.... ..+... ++..+... +.-...+.
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~-~~l~~~-----~~~~~~~~~~~~~~~~~~~~~v~g~~~ 73 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA-RMALKK-----GYDLYVAIPERVKLFEKAGIEVAGTVD 73 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHH-HHHHHT-----TCCEEESSGGGHHHHHHTTCCCCEEHH
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHH-HHHHhc-----CCceEecccccceeecccCcccCCChh
Confidence 68999998 7999999999998875 688877654333322 222211 11111111 11111344
Q ss_pred HHhcCCCEEEEcccC
Q 020608 73 AAVTGCTGVFHLASP 87 (323)
Q Consensus 73 ~~~~~~d~Vih~a~~ 87 (323)
.+++++|+|+-|.|.
T Consensus 74 ~~~~~vDvViEcTG~ 88 (171)
T d1cf2o1 74 DMLDEADIVIDCTPE 88 (171)
T ss_dssp HHHHTCSEEEECCST
T ss_pred HhhcCCCEEEEccCC
Confidence 556789999999986
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.33 E-value=0.0085 Score=45.13 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=31.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 39 (323)
.+|||+|.|| |..|...+..|+++|+ +|+++.|+.
T Consensus 3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 4689999996 9999999999999998 599998765
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.013 Score=43.77 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=32.2
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
..|+|+|.|| |.-|-..+..|+++||+|+++.+.+
T Consensus 42 ~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 42 QKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence 4689999996 9999999999999999999998865
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.19 E-value=0.051 Score=43.44 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=31.3
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEec
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVK 37 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r 37 (323)
++++++|+|-| .|-+|+++++.|.+.|.+|++++.
T Consensus 33 ~L~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 33 GFGDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp SSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence 35789999999 599999999999999999998864
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.10 E-value=0.024 Score=41.14 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=40.7
Q ss_pred CCCCCceEEEeccccHHHHHHH-HHHHHC-CCEEEEEe-cCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHH--h
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLV-SLLLER-RYTVHATV-KNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAA--V 75 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~-~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~--~ 75 (323)
|+ +..||.|.| +|.||+.+. +.|.+. ..+++++. |++..... ...+.. ++.+... ..+++.+. +
T Consensus 1 M~-kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~-~~a~~~-----~i~~~~~---~~d~l~~~~~~ 69 (157)
T d1nvmb1 1 MN-QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL-ARAQRM-----GVTTTYA---GVEGLIKLPEF 69 (157)
T ss_dssp CC-SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH-HHHHHT-----TCCEESS---HHHHHHHSGGG
T ss_pred CC-CCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccch-hhhhhc-----CCccccc---ceeeeeecccc
Confidence 65 557899999 899999755 444433 34777764 55433222 222221 2222222 23344332 3
Q ss_pred cCCCEEEEcc
Q 020608 76 TGCTGVFHLA 85 (323)
Q Consensus 76 ~~~d~Vih~a 85 (323)
.++|+||.+.
T Consensus 70 ~~iDiVf~AT 79 (157)
T d1nvmb1 70 ADIDFVFDAT 79 (157)
T ss_dssp GGEEEEEECS
T ss_pred cccCEEEEcC
Confidence 4789998764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.04 E-value=0.064 Score=39.36 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=45.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGV 81 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~V 81 (323)
+.+|+|.|+ |.+|...+..+...|. .|++.+++ ..+.+..+++. ..+++..+=.+.+...+... ++|+|
T Consensus 33 g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~---~~k~~~~~~~g----a~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 33 GAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVK---EEKLKLAERLG----ADHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESS---HHHHHHHHHTT----CSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEeCC-ChHHHHHHHHHHhhcCcccccccch---hHHHHHHhhcc----cceeecCcccHHHHHHHhhCCCCceEE
Confidence 568999885 9999999998888885 56666554 33334444432 12333333222233333322 58999
Q ss_pred EEcccC
Q 020608 82 FHLASP 87 (323)
Q Consensus 82 ih~a~~ 87 (323)
|.+++.
T Consensus 105 id~~g~ 110 (172)
T d1h2ba2 105 MDFVGS 110 (172)
T ss_dssp EESSCC
T ss_pred EEecCc
Confidence 999975
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.96 E-value=0.06 Score=36.73 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=53.3
Q ss_pred ceEEEeccc---cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 6 EVVCVTGGS---GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 6 ~~vlItGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
|+|.|.|+| +-.|..+.+.|++.||+|+.+..+.. . ...+.-..++.++-..+|.++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~----------------~----i~G~~~y~sl~~lp~~~D~vv 61 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYD----------------E----IEGLKCYRSVRELPKDVDVIV 61 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----------------E----ETTEECBSSGGGSCTTCCEEE
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccc----------------c----ccCccccccchhccccceEEE
Confidence 789999988 77999999999999999988742210 0 011111122333334678877
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEe
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVT 126 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 126 (323)
-+.. -..+..+++.|.+.|++.+++-
T Consensus 62 i~vp------------------~~~~~~~l~~~~~~g~k~v~~~ 87 (116)
T d1y81a1 62 FVVP------------------PKVGLQVAKEAVEAGFKKLWFQ 87 (116)
T ss_dssp ECSC------------------HHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEeC------------------HHHHHHHHHHHHhcCCceEEec
Confidence 6542 1234567777888888776553
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.96 E-value=0.014 Score=43.13 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=30.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~ 39 (323)
.+|||+|.|| |++|..++.+|.+.+. +|+++.+.+
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 3799999996 9999999999999874 788887654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.92 E-value=0.017 Score=45.55 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=31.2
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+||+|+|| |.-|..++..|+++|++|+++.|++
T Consensus 4 ~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 4 TDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 579999996 9999999999999999999998764
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.81 E-value=0.031 Score=38.87 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=58.0
Q ss_pred CceEEEeccccHHHHHHHHHHHH-CCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-CCCEEE
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLE-RRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-GCTGVF 82 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~Vi 82 (323)
..+|+|.|| |.+|+.|++++.. .+++++++....+...- .. -.++..+. .+.++++.+ .++..+
T Consensus 3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G----~~----I~Gi~V~~-----~~~l~~~~~~~i~iai 68 (126)
T d2dt5a2 3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVG----RP----VRGGVIEH-----VDLLPQRVPGRIEIAL 68 (126)
T ss_dssp CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTT----CE----ETTEEEEE-----GGGHHHHSTTTCCEEE
T ss_pred CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcC----CE----ECCEEEec-----HHHHHHHHhhcccEEE
Confidence 358999996 9999999998754 47899988764322110 00 12444442 234555554 455555
Q ss_pred EcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 83 HLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 83 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
-+.. -...+.+++.+.+++++.+..++..
T Consensus 69 ~~i~------------------~~~~~~I~d~l~~~gIk~I~~f~~~ 97 (126)
T d2dt5a2 69 LTVP------------------REAAQKAADLLVAAGIKGILNFAPV 97 (126)
T ss_dssp ECSC------------------HHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred EeCC------------------HHHHHHHHHHHHHcCCCEEeecCce
Confidence 4432 1234567888888899988888776
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=94.76 E-value=0.046 Score=39.49 Aligned_cols=69 Identities=12% Similarity=0.035 Sum_probs=49.2
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
+.+|+++|.| =|.+|+-++++|...|.+|+++-.+| ....+.. ..+++.. .++++++..|+||
T Consensus 21 laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DP--i~alqA~------mdGf~v~--------~~~~a~~~aDi~v 83 (163)
T d1v8ba1 21 ISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDP--ICAIQAV------MEGFNVV--------TLDEIVDKGDFFI 83 (163)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCH--HHHHHHH------TTTCEEC--------CHHHHTTTCSEEE
T ss_pred ecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCc--hhhHHHH------hcCCccC--------chhHccccCcEEE
Confidence 5689999999 69999999999999999999986653 2222221 1233321 2456777888888
Q ss_pred EcccCC
Q 020608 83 HLASPC 88 (323)
Q Consensus 83 h~a~~~ 88 (323)
-+.|..
T Consensus 84 TaTGn~ 89 (163)
T d1v8ba1 84 TCTGNV 89 (163)
T ss_dssp ECCSSS
T ss_pred EcCCCC
Confidence 887753
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.71 E-value=0.055 Score=38.23 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=55.5
Q ss_pred CceEEEeccc---cHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEE
Q 020608 5 AEVVCVTGGS---GCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGV 81 (323)
Q Consensus 5 ~~~vlItGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 81 (323)
.|+|.|.|+| +-.|..+++.|.+.||+|+.+.-... ++. +.. ..-+ +.++-..+|.|
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~---------~i~----G~~-~~~s------l~dlp~~iD~v 78 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE---------EVL----GRK-CYPS------VLDIPDKIEVV 78 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS---------EET----TEE-CBSS------GGGCSSCCSEE
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc---------ccC----CCc-cccc------ccccCccceEE
Confidence 5789999998 78999999999999999988742210 000 111 1122 23333467887
Q ss_pred EEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 82 FHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 82 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
+-+.. -..+..+++.|.+.+++.+++.++
T Consensus 79 ~i~vp------------------~~~~~~~~~e~~~~g~k~v~~~~G 107 (139)
T d2d59a1 79 DLFVK------------------PKLTMEYVEQAIKKGAKVVWFQYN 107 (139)
T ss_dssp EECSC------------------HHHHHHHHHHHHHHTCSEEEECTT
T ss_pred EEEeC------------------HHHHHHHHHHHHHhCCCEEEEecc
Confidence 66642 223556778887888877666443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.69 E-value=0.11 Score=38.99 Aligned_cols=74 Identities=22% Similarity=0.101 Sum_probs=47.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCH---hHHHHHhc--C
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDY---DAIAAAVT--G 77 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~--~ 77 (323)
.+.+|+|.|+ |.+|...+..+...|. +|+++++++ .+.+.++++ +...+. |-.+. +.+.++.. +
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~---~rl~~a~~~-----Ga~~~~-~~~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNP---ARLAHAKAQ-----GFEIAD-LSLDTPLHEQIAALLGEPE 94 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH---HHHHHHHHT-----TCEEEE-TTSSSCHHHHHHHHHSSSC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccc---hhhHhhhhc-----cccEEE-eCCCcCHHHHHHHHhCCCC
Confidence 4679999985 9999888888877776 788777643 333444443 233222 22222 33444433 6
Q ss_pred CCEEEEcccC
Q 020608 78 CTGVFHLASP 87 (323)
Q Consensus 78 ~d~Vih~a~~ 87 (323)
+|++|.+.|.
T Consensus 95 ~D~vid~vG~ 104 (195)
T d1kola2 95 VDCAVDAVGF 104 (195)
T ss_dssp EEEEEECCCT
T ss_pred cEEEEECccc
Confidence 8999999885
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.68 E-value=0.07 Score=37.42 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=47.0
Q ss_pred eEEEeccccHHHHHHHHHHHHC-CCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc-----CCCE
Q 020608 7 VVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT-----GCTG 80 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d~ 80 (323)
||.|.|++|-+|+.+++.+.+. ++++.+..-..+.... .. ....+ +..|++.++...+.++ ++-.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~---~~---~~~~D---vvIDFS~p~~~~~~~~~~~~~~~~~ 71 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSL---LT---DGNTE---VVIDFTHPDVVMGNLEFLIDNGIHA 71 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHH---HH---TTTCS---EEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhh---hc---cccCC---EEEEcccHHHHHHHHHHHHhcCCCE
Confidence 7899999999999999998775 6787665433222211 11 11112 5688888877665543 6677
Q ss_pred EEEcccC
Q 020608 81 VFHLASP 87 (323)
Q Consensus 81 Vih~a~~ 87 (323)
|+=+.|.
T Consensus 72 ViGTTG~ 78 (135)
T d1yl7a1 72 VVGTTGF 78 (135)
T ss_dssp EECCCCC
T ss_pred EEecccc
Confidence 7766655
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=94.67 E-value=0.096 Score=40.77 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=31.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEec
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVK 37 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r 37 (323)
++++++|+|-| .|-+|+++++.|.+.|.+|++++.
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 46789999999 699999999999999999998864
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.64 E-value=0.019 Score=42.59 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=29.6
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+++|+|.|| |++|..++..|.+.|.+|.++.+.+
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence 5689999996 9999999999999998876665544
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.63 E-value=0.017 Score=46.55 Aligned_cols=34 Identities=24% Similarity=0.105 Sum_probs=30.7
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+|||+|+|| |.-|...+.+|++.|++|+++.+++
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 489999996 9999999999999999999997653
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0082 Score=51.37 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=50.5
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHH-----------------HHHHHhhccC--CCCCeEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDER-----------------ETAHLKALEG--ADTRLRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-----------------~~~~~~~~~~--~~~~~~~~~~ 63 (323)
+.+||||.|+ |.+|+++++.|+..|. ++.+++.+.-... .....+.+.. ...++..+..
T Consensus 36 ~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 114 (426)
T d1yovb1 36 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN 114 (426)
T ss_dssp HHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred hcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence 3468999997 7799999999999997 6777753221111 1111112221 2235666777
Q ss_pred cCCCHhHHHHHhcCCCEEEEcc
Q 020608 64 DLLDYDAIAAAVTGCTGVFHLA 85 (323)
Q Consensus 64 Dl~~~~~~~~~~~~~d~Vih~a 85 (323)
++.+.. ..+++++|+||.+.
T Consensus 115 ~i~~~~--~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 115 KIQDFN--DTFYRQFHIIVCGL 134 (426)
T ss_dssp CGGGBC--HHHHTTCSEEEECC
T ss_pred cccchH--HHHHHhcchheecc
Confidence 776543 35788999999775
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=94.58 E-value=0.028 Score=43.50 Aligned_cols=36 Identities=28% Similarity=0.183 Sum_probs=32.1
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
++++++|+|-| .|-+|+++++.|.+.|.+|++.+.+
T Consensus 36 ~l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~ 71 (230)
T d1leha1 36 SLEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVN 71 (230)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeeccc
Confidence 36789999999 5999999999999999999988654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.39 E-value=0.024 Score=46.63 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=31.8
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCC--CEEEEEecCC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERR--YTVHATVKNL 39 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g--~~V~~~~r~~ 39 (323)
|. .||+|+|+|| |.-|...+..|+++| ++|+++-|+.
T Consensus 1 m~-~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 1 LP-TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CC-SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CC-CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 55 6789999996 999999999999876 6999998764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.37 E-value=0.028 Score=40.66 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=28.6
Q ss_pred CceEEEe-ccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVT-GGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlIt-GatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+.++|. .+.||||..+++.|++.|.+|+++.+.+
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~ 74 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 74 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence 3455554 3459999999999999999999998865
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.078 Score=46.46 Aligned_cols=111 Identities=10% Similarity=0.107 Sum_probs=63.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHH-----------------HHhhccCCCCC--eEEEEc
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETA-----------------HLKALEGADTR--LRLFQI 63 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-----------------~~~~~~~~~~~--~~~~~~ 63 (323)
+..+|+|.|+ |.+|+++++.|+..|. ++++++...-...... ..+.+...++. ++.+..
T Consensus 24 ~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~ 102 (529)
T d1yova1 24 ESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE 102 (529)
T ss_dssp HHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESS
T ss_pred hCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 3468999996 7899999999999996 6777754332221111 11222333333 334444
Q ss_pred cCCCH-hHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccC
Q 020608 64 DLLDY-DAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITP 134 (323)
Q Consensus 64 Dl~~~-~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~ 134 (323)
++.+. +.-.+.+.++|+||.+... ......+.+.|++.++ .+|+++|. +.+|
T Consensus 103 ~~~~~~~~~~~~~~~~dvVv~~~~~-----------------~~~~~~l~~~c~~~~i-p~i~~~~~-G~~G 155 (529)
T d1yova1 103 SPENLLDNDPSFFCRFTVVVATQLP-----------------ESTSLRLADVLWNSQI-PLLICRTY-GLVG 155 (529)
T ss_dssp CHHHHHHSCGGGGGGCSEEEEESCC-----------------HHHHHHHHHHHHHHTC-CEEEEEEE-TTEE
T ss_pred CchhhhhhHHHHhcCCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEecc-CCEE
Confidence 33221 1112346678999866421 2233456677887775 68888776 4443
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.00 E-value=0.0081 Score=44.44 Aligned_cols=117 Identities=12% Similarity=0.023 Sum_probs=61.7
Q ss_pred ceEEEecc-ccHHHHHHHHHHHHCC----CEEEEEecCCCcHHHHHHHhhc-----cCCCCCeEEEEccCCCHhHHHHHh
Q 020608 6 EVVCVTGG-SGCIGSWLVSLLLERR----YTVHATVKNLSDERETAHLKAL-----EGADTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 6 ~~vlItGa-tG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
+||.|+|| +.+.+..++.-++... -+++.++.+++. ...+.++.. ........+ ..-+| ..+.+
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~-~~~~~~d~~~~~~~~~~~~~~~~--~~~td---~~~al 75 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGK-EKLEIVGALAKRMVEKAGVPIEI--HLTLD---RRRAL 75 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGH-HHHHHHHHHHHHHHHHTTCCCEE--EEESC---HHHHH
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccH-HHHHHHHHHHHHHHHhcCCCcee--eecCC---chhhc
Confidence 68899996 3455555555555431 388888776532 222322211 111112221 11122 35567
Q ss_pred cCCCEEEEcccCCccCCCCCc----------------h--hhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 76 TGCTGVFHLASPCIVDKVEDP----------------Q--NQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 76 ~~~d~Vih~a~~~~~~~~~~~----------------~--~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
+++|+||.+|+....+....+ + .....-|+.-.+.+++...+++...++.+-|
T Consensus 76 ~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 76 DGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 899999999986422110000 0 0112347777888888888877555555443
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.02 Score=46.39 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=30.5
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
|..|+|+|| |+-|..+|++|++.|++|.++-++.
T Consensus 1 M~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred CccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCC
Confidence 578999996 9999999999999999999997654
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.95 E-value=0.021 Score=45.87 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=29.7
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+|+|.|| |-.|..++..|.+.|++|.++.|.+
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 7999997 8999999999999999999998764
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.95 E-value=0.023 Score=45.55 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=29.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
|+|+|+|| |.-|...+.+|+++|++|+++-++.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 57999997 9999999999999999999997653
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.92 E-value=0.04 Score=42.74 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=31.7
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
..++|+|.|| |..|...+.+|+++|++|+++.++.
T Consensus 48 ~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 48 NKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecc
Confidence 4689999996 9999999999999999999997755
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.85 E-value=0.025 Score=42.68 Aligned_cols=32 Identities=28% Similarity=0.218 Sum_probs=26.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
|||.|.| .||+|..++..| ++|++|++++-++
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILP 32 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCH
Confidence 6799997 799999999766 5799999997653
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.61 E-value=0.038 Score=42.92 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=29.8
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHH-CCCEEEEEe
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLE-RRYTVHATV 36 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~ 36 (323)
++++++|.|-| .|-+|+++++.|.+ .|..|++++
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs 62 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVS 62 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence 46789999998 79999999999975 599999876
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=93.46 E-value=0.04 Score=44.84 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
..|+|+|+|| |.-|...+.+|+++|++|+++.++.
T Consensus 29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3579999996 9999999999999999999997643
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.45 E-value=0.041 Score=41.36 Aligned_cols=33 Identities=24% Similarity=0.032 Sum_probs=28.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 39 (323)
|||+|.|| |++|..++..|.+. +.+|+++.|..
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 68999996 99999999999886 46888887754
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=93.41 E-value=0.068 Score=36.39 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=28.6
Q ss_pred CceEEEeccccHHHHHHHHHHHH---CCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLE---RRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~---~g~~V~~~~r~~ 39 (323)
.++++|.|| |++|-.++..|.+ .|.+|.++.|.+
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence 579999996 9999999987665 488999998864
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=93.26 E-value=0.11 Score=37.85 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=43.1
Q ss_pred CCceEEEeccccHHHHH-HHHHHHHC-----CCEEEEEecCCCcHHHH-HHHhhcc-CCCCCeEEEEccCCCHhHHHHHh
Q 020608 4 EAEVVCVTGGSGCIGSW-LVSLLLER-----RYTVHATVKNLSDERET-AHLKALE-GADTRLRLFQIDLLDYDAIAAAV 75 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~-l~~~L~~~-----g~~V~~~~r~~~~~~~~-~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~ 75 (323)
+..||.|.|| |.+|.. ++..|+.. +-++++++.+++..+.. ..++... ............ +..+++
T Consensus 2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~eal 75 (167)
T d1u8xx1 2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATT-----DPEEAF 75 (167)
T ss_dssp CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEES-----CHHHHH
T ss_pred CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecC-----Chhhcc
Confidence 3468999998 445553 44555543 23898888765332211 1111111 111222322221 356678
Q ss_pred cCCCEEEEcccCC
Q 020608 76 TGCTGVFHLASPC 88 (323)
Q Consensus 76 ~~~d~Vih~a~~~ 88 (323)
+++|+||.+|+..
T Consensus 76 ~~AD~Vvitag~~ 88 (167)
T d1u8xx1 76 TDVDFVMAHIRVG 88 (167)
T ss_dssp SSCSEEEECCCTT
T ss_pred CCCCEEEECCCcC
Confidence 8999999999874
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.14 Score=41.05 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=24.1
Q ss_pred cccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 13 GSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 13 atG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.||-.|.+|+++|+.+|++|+.+.+..
T Consensus 44 SSGk~G~alA~~~~~~Ga~V~li~g~~ 70 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAGYGVLFLYRAR 70 (290)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CchHHHHHHHHHHHHcCCEEEEEecCC
Confidence 379999999999999999999997654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.17 E-value=0.13 Score=37.57 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=44.3
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCCCcHHHHHHHhhccCCCCCeEEEE-ccCCC-HhHHHHHh--cCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNLSDERETAHLKALEGADTRLRLFQ-IDLLD-YDAIAAAV--TGC 78 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~~-~~~~~~~~--~~~ 78 (323)
.+.+|+|.|+ |.+|...+..+...|. +|+++++++.+ .+..+++.. . +.+. .+-.+ .+...... .++
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r---l~~a~~~GA---d-~~in~~~~~~~~~~~~~~~~~~G~ 99 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDK---FEKAKVFGA---T-DFVNPNDHSEPISQVLSKMTNGGV 99 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG---HHHHHHTTC---C-EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHH---HHHHHHcCC---c-EEEcCCCcchhHHHHHHhhccCCc
Confidence 4568999996 6677777777777765 78888765433 333444311 1 2222 11111 22333332 379
Q ss_pred CEEEEcccC
Q 020608 79 TGVFHLASP 87 (323)
Q Consensus 79 d~Vih~a~~ 87 (323)
|+||.+.|.
T Consensus 100 d~vid~~G~ 108 (175)
T d1cdoa2 100 DFSLECVGN 108 (175)
T ss_dssp SEEEECSCC
T ss_pred ceeeeecCC
Confidence 999999875
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.054 Score=38.17 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=28.3
Q ss_pred CceEEEeccccHHHHHHHHHHHH----CCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLE----RRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~----~g~~V~~~~r~~ 39 (323)
.++++|.|| ||+|..++..|.+ .|.+|+.+.+..
T Consensus 37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~ 74 (137)
T d1m6ia2 37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEK 74 (137)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence 478999996 9999999999863 589999987754
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.91 E-value=0.049 Score=43.31 Aligned_cols=31 Identities=19% Similarity=0.063 Sum_probs=28.4
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
|+|.|| |..|..++.+|+++|++|+++.+..
T Consensus 6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 899996 9999999999999999999998753
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=92.77 E-value=0.075 Score=36.19 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=27.7
Q ss_pred CceEEEeccccHHHHHHHHHHHH---CCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLE---RRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~---~g~~V~~~~r~~ 39 (323)
.++++|.|| |++|..++..|.+ +|.+|+++.|..
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 479999997 9999999977665 456899998754
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=92.60 E-value=0.029 Score=41.62 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=26.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCCEEEEEec
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRYTVHATVK 37 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r 37 (323)
..+|+|.|| |++|-.++..|.+.|.++.++.+
T Consensus 3 ~a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~ 34 (183)
T d1d7ya1 3 KAPVVVLGA-GLASVSFVAELRQAGYQGLITVV 34 (183)
T ss_dssp CSSEEEECC-SHHHHHHHHHHHHHTCCSCEEEE
T ss_pred CCCEEEECc-cHHHHHHHHHHHhcCCceEEEEE
Confidence 357999995 99999999999999976555443
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=92.56 E-value=0.056 Score=43.54 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=29.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 39 (323)
.+|+|+|| |.+|..++.+|+++|. +|+++.|+.
T Consensus 2 ~dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 37999996 9999999999999996 699998764
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.43 E-value=0.069 Score=41.20 Aligned_cols=32 Identities=28% Similarity=0.140 Sum_probs=28.9
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
-|+|+| +|.-|...+.+|+++|++|.++-++.
T Consensus 7 DviViG-aG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLG-TGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 489999 59999999999999999999997764
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.34 E-value=0.34 Score=37.40 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHC-CCEEEEEecC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLER-RYTVHATVKN 38 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~ 38 (323)
+++++|+|-|- |-+|+++++.|.+. |..|+++...
T Consensus 30 l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~ 65 (239)
T d1gtma1 30 LKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS 65 (239)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence 67899999995 99999999999865 8999888643
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.32 E-value=0.073 Score=38.54 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=26.7
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
||+|.|| |++|..++..|. ++.+|+++.|.+
T Consensus 2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence 7999996 999999999995 578999997754
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=91.94 E-value=0.65 Score=32.97 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.3
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
||-++| .|.+|+.+++.|++.|+.+ +..|+++
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~~-~~~~~~~ 33 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPTL-VWNRTFE 33 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCEE-EECSSTH
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCEE-EEeCCHH
Confidence 688899 5999999999999989876 4566653
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.88 E-value=0.011 Score=45.93 Aligned_cols=27 Identities=33% Similarity=0.304 Sum_probs=24.0
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEE
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVH 33 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~ 33 (323)
|||+|.|| |.+|...+.+|+++|++|+
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCce
Confidence 68999996 9999999999999997543
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.72 E-value=0.11 Score=42.16 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=30.0
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
+.+||+|+|| |.-|-..+.+|.++|++|+++-++
T Consensus 4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~ 37 (449)
T d2dw4a2 4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEAR 37 (449)
T ss_dssp CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4568999996 999999999999999999998543
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=0.44 Score=32.59 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=48.6
Q ss_pred CCceEEEecc----------ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHH
Q 020608 4 EAEVVCVTGG----------SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAA 73 (323)
Q Consensus 4 ~~~~vlItGa----------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (323)
..|||||.|+ --+-+.+.+++|.+.|++++.+.-++..-.... + -..-+...--..+.+.+
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~------d---~aD~lYfePlt~e~v~~ 76 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDP------E---MADATYIEPIHWEVVRK 76 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCG------G---GSSEEECSCCCHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcCh------h---hcceeeeecCCHHHHHH
Confidence 4589999998 457899999999999999999876664322100 0 01112233334566666
Q ss_pred Hhc--CCCEEEEccc
Q 020608 74 AVT--GCTGVFHLAS 86 (323)
Q Consensus 74 ~~~--~~d~Vih~a~ 86 (323)
.++ ++|.|+-..|
T Consensus 77 Ii~~E~pd~il~~~G 91 (127)
T d1a9xa3 77 IIEKERPDAVLPTMG 91 (127)
T ss_dssp HHHHHCCSEEECSSS
T ss_pred HHHHhCcCCeEEEee
Confidence 665 7898875554
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.27 E-value=0.14 Score=40.23 Aligned_cols=33 Identities=15% Similarity=0.038 Sum_probs=29.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 39 (323)
++|+|+|| |.-|..++..|.+.|. +|.++-|++
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 58999996 9999999999999995 898888765
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=91.23 E-value=0.12 Score=40.50 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=31.6
Q ss_pred CCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEec
Q 020608 2 SKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVK 37 (323)
Q Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r 37 (323)
++++++|.|.| .|-+|+++++.|.+.|.+|++++.
T Consensus 33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 33 TLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp CSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence 46889999999 699999999999999999998854
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.71 E-value=0.58 Score=35.02 Aligned_cols=75 Identities=11% Similarity=0.063 Sum_probs=44.1
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHH-------HHHHhhccCCCCCeEEE-EccCCCHhHHHHHhc-
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERE-------TAHLKALEGADTRLRLF-QIDLLDYDAIAAAVT- 76 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~- 76 (323)
|||++.|. +..|..+++.|.+.|++|.++.-.+++... .+...+ .++.++ ..++.+.+.++.+.+
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~-----~~i~~~~~~~~~~~~~~~~i~~~ 74 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAE-----RGIPVYAPDNVNHPLWVERIAQL 74 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHH-----HTCCEECCSCCCSHHHHHHHHHT
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHH-----cCCcceecccccchhhhhhhhhh
Confidence 56777764 668999999999999999876643322111 011111 133333 356666665544333
Q ss_pred CCCEEEEccc
Q 020608 77 GCTGVFHLAS 86 (323)
Q Consensus 77 ~~d~Vih~a~ 86 (323)
++|.++....
T Consensus 75 ~~Dlii~~g~ 84 (203)
T d2blna2 75 SPDVIFSFYY 84 (203)
T ss_dssp CCSEEEEESC
T ss_pred cccceeeeec
Confidence 6788876654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=90.28 E-value=0.79 Score=33.45 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=45.9
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhcc-----------CCCCCeEEEEccCCCHhHHH
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALE-----------GADTRLRLFQIDLLDYDAIA 72 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Dl~~~~~~~ 72 (323)
.+++||..|+.- | ..+..|+++|++|++++.++......+...... .......++.+|..+.....
T Consensus 20 ~~~rvLd~GCG~--G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 20 PGARVLVPLCGK--S-QDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp TTCEEEETTTCC--S-HHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEecCcC--C-HHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 467999999633 3 356678888999999988653333222211100 01235678888887754322
Q ss_pred HHhcCCCEEEEccc
Q 020608 73 AAVTGCTGVFHLAS 86 (323)
Q Consensus 73 ~~~~~~d~Vih~a~ 86 (323)
....|.|+-...
T Consensus 97 --~~~~D~i~~~~~ 108 (201)
T d1pjza_ 97 --IGHCAAFYDRAA 108 (201)
T ss_dssp --HHSEEEEEEESC
T ss_pred --ccceeEEEEEee
Confidence 234577665443
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.98 E-value=0.15 Score=39.58 Aligned_cols=32 Identities=22% Similarity=0.088 Sum_probs=28.4
Q ss_pred eEEEeccccHHHHHHHHHHHHCCC-EEEEEecCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNL 39 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 39 (323)
+|+|+|| |.-|...+.+|.++|+ +|+++-++.
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 7999996 9999999999999996 799997653
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=89.82 E-value=0.17 Score=40.61 Aligned_cols=33 Identities=27% Similarity=0.214 Sum_probs=29.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
-.|+|+|| |+-|-.++.+|.+.|.+|+++.+.+
T Consensus 8 ~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~ 40 (298)
T d1w4xa1 8 VDVLVVGA-GFSGLYALYRLRELGRSVHVIETAG 40 (298)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 36999996 9999999999999999999998764
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.68 E-value=0.85 Score=34.06 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=26.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEec
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVK 37 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r 37 (323)
|||++.| ++..|..+.+.|.++|++|.++.-
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t 31 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFT 31 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEc
Confidence 5788887 578899999999999999987763
|
| >d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Hypothetical protein YfdW species: Escherichia coli [TaxId: 562]
Probab=89.49 E-value=0.7 Score=38.74 Aligned_cols=114 Identities=9% Similarity=0.012 Sum_probs=65.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC-cHHHHHH--Hh-----hccCCCCCeEEEEccCCCHhH---H
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-DERETAH--LK-----ALEGADTRLRLFQIDLLDYDA---I 71 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~--~~-----~~~~~~~~~~~~~~Dl~~~~~---~ 71 (323)
+.+-|||=.+ +..-|-...+.|+..|.+|+=+-+... +...... .. .....+.+-+.+..|+.+++. +
T Consensus 5 L~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~ 83 (417)
T d1q7ea_ 5 LQGIKVLDFT-GVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVM 83 (417)
T ss_dssp TTTCEEEECC-CTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEcC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCchhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHH
Confidence 5667777555 456677778888889999998864321 1111000 00 001113355788999998765 5
Q ss_pred HHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecccccccC
Q 020608 72 AAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSITP 134 (323)
Q Consensus 72 ~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~ 134 (323)
.++++++|+||++--........=+++.. ++.+ .++||+|-+ +++.
T Consensus 84 ~~Li~~aDv~i~n~~pg~~~rlGl~~~~l---------------~~~n-P~lI~~sis-gfG~ 129 (417)
T d1q7ea_ 84 EKLIREADILVENFHPGAIDHMGFTWEHI---------------QEIN-PRLIFGSIK-GFDE 129 (417)
T ss_dssp HHHHHHCSEEEECCCC-------CCHHHH---------------HHHC-TTCEEEEEE-SSCT
T ss_pred HHHHhcCcccEeccCCCcHhhcCCCHHHH---------------HhhC-CCEEEEeee-cccc
Confidence 57788999999997543322211122222 2223 689999876 5543
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.17 E-value=0.32 Score=34.69 Aligned_cols=34 Identities=18% Similarity=0.026 Sum_probs=28.6
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC-EEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY-TVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 39 (323)
.++|+|+|| |.+|...+..+++.|. .|+++.|..
T Consensus 45 ~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 568999996 9999999999999997 577777653
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=88.76 E-value=0.054 Score=38.84 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=19.8
Q ss_pred EEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 9 CVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 9 lItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
-++| +|-+|+++++.|.+.++.+.+..|++.
T Consensus 3 gfIG-~G~mg~~l~~~L~~~~~~~~v~~R~~~ 33 (153)
T d2i76a2 3 NFVG-TGTLTRFFLECLKDRYEIGYILSRSID 33 (153)
T ss_dssp EEES-CCHHHHHHHHTTC----CCCEECSSHH
T ss_pred EEEe-CcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 3566 699999999988654444456777643
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.60 E-value=2 Score=31.56 Aligned_cols=45 Identities=27% Similarity=0.180 Sum_probs=33.3
Q ss_pred ceEEEeccccHHHHHHHHHHHHCC-----CEEEEEecCCCcHHHHHHHhhc
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERR-----YTVHATVKNLSDERETAHLKAL 51 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~ 51 (323)
+||.|=| -|-||+.+.+.+++++ .+|+.+.....+.+....+.+.
T Consensus 3 ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlky 52 (190)
T d1k3ta1 3 IKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRY 52 (190)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHE
T ss_pred eEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhc
Confidence 7999999 7999999999998864 3677666544456665665544
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=88.52 E-value=0.16 Score=39.62 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=30.5
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
..|+|+|| |--|...+.+|+++|.+|.++.+++.
T Consensus 5 ~DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~ 38 (253)
T d2gqfa1 5 SENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKK 38 (253)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CcEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 45999996 99999999999999999999988754
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=88.48 E-value=1.6 Score=31.36 Aligned_cols=80 Identities=21% Similarity=0.198 Sum_probs=48.7
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCC----CCeE------------EEEccCCCHh
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGAD----TRLR------------LFQIDLLDYD 69 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~------------~~~~Dl~~~~ 69 (323)
+||.|=| -|-||+.+.+.|.+++.+|+++.-. .+.+....+.+..... ..+. +....-.|++
T Consensus 1 ikigING-fGRIGR~~~R~l~~~~i~iv~INd~-~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~ 78 (168)
T d2g82a1 1 MKVGING-FGRIGRQVFRILHSRGVEVALINDL-TDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK 78 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEECS-SCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred CEEEEEC-CcHHHHHHHHHHhcCCCEEEEECCC-cchhhhhheeecccccCccccccccccceeEecceeEEEEecCChH
Confidence 4788888 6999999999999999999888654 3555545554432111 1111 1111122343
Q ss_pred HHHHHhcCCCEEEEcccC
Q 020608 70 AIAAAVTGCTGVFHLASP 87 (323)
Q Consensus 70 ~~~~~~~~~d~Vih~a~~ 87 (323)
++.=.-.++|+|+-|.|.
T Consensus 79 ~i~W~~~gvdiViEcTG~ 96 (168)
T d2g82a1 79 EIPWAEAGVGVVIESTGV 96 (168)
T ss_dssp GCCTGGGTEEEEEECSSS
T ss_pred HCcccccCCceeEecccc
Confidence 332222378999999986
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=88.40 E-value=0.51 Score=39.44 Aligned_cols=110 Identities=7% Similarity=0.022 Sum_probs=65.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC-CcHHHH--HHHhhccCCCCCeEEEEccCCCHhH---HHHHhc
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL-SDERET--AHLKALEGADTRLRLFQIDLLDYDA---IAAAVT 76 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~ 76 (323)
+.+-|||=.+ +..-|-...+.|++.|.+|+=+-+.. .+.... ..... .+.+-+.+..|+.+++. +.++++
T Consensus 9 L~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~---~n~~K~si~ldl~~~~G~~~~~~Lv~ 84 (402)
T d1xk7a1 9 LAGLRVVFSG-IEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQL---SRRNLHALSLNIFKDEGREAFLKLME 84 (402)
T ss_dssp TTTCEEEEEC-CSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHH---HTTTCEEEEECTTSHHHHHHHHHHHT
T ss_pred CCCCEEEEeC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHH---hCCCCeEEEEeCcCHHHHHHHHHHHh
Confidence 4566777665 45568888888999999999776432 111100 00000 12355778899998755 667888
Q ss_pred CCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccccccc
Q 020608 77 GCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSIT 133 (323)
Q Consensus 77 ~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~ 133 (323)
.+|+||++--........-+++ ..++.+ .++||+|-+ +++
T Consensus 85 ~aDv~i~n~rpg~~~~lGl~~~---------------~L~~~n-P~lI~~sis-gfG 124 (402)
T d1xk7a1 85 TTDIFIEASKGPAFARRGITDE---------------VLWQHN-PKLVIAHLS-GFG 124 (402)
T ss_dssp TCSEEEEECSSSHHHHTTCCHH---------------HHHHHC-TTCEEEEEE-SSC
T ss_pred hcCCceeeeccccccccccccc---------------chhhcc-ccccceeee-ccc
Confidence 9999999965432211111222 222333 689998876 555
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=88.39 E-value=0.22 Score=41.03 Aligned_cols=31 Identities=16% Similarity=-0.027 Sum_probs=28.2
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
-|+|+| +|+-|..++.+|++.|++|.++-+.
T Consensus 4 ~VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIG-TGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeC-cCHHHHHHHHHHHHCcCeEEEEecC
Confidence 378999 5999999999999999999999874
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=88.28 E-value=0.25 Score=38.11 Aligned_cols=33 Identities=27% Similarity=0.093 Sum_probs=29.8
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
-|+|+|| |..|...+..|+++|++|+++.+++.
T Consensus 4 DViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5899996 99999999999999999999987653
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.27 E-value=0.25 Score=40.04 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=28.0
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
|+|+|| |.-|...+.+|+++|++|+++-++.
T Consensus 2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 789996 9999999999999999999997643
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=87.89 E-value=0.58 Score=31.61 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=31.3
Q ss_pred CCceEEEeccc----------cHHHHHHHHHHHHCCCEEEEEecCCC
Q 020608 4 EAEVVCVTGGS----------GCIGSWLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 4 ~~~~vlItGat----------G~iG~~l~~~L~~~g~~V~~~~r~~~ 40 (323)
..++|||.|+. -+-+.+.+++|.+.|++++.+.-+|.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 45899999983 37899999999999999999876653
|
| >d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: 2-methylacyl-CoA racemase Mcr species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.59 E-value=0.6 Score=38.27 Aligned_cols=79 Identities=11% Similarity=-0.010 Sum_probs=49.7
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhH---HHHHhcCCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDA---IAAAVTGCT 79 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~~d 79 (323)
+.+-+||=.+ ...-|-...+.|+..|.+|+=+-+...... .. ....+.+-+.+..|+.+++. +.++++++|
T Consensus 4 L~girVld~~-~~~agp~~~~~lad~GA~VikvE~p~~~~~----~~-~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aD 77 (359)
T d1x74a1 4 LSGLRVVELA-GIGPGPHAAMILGDLGADVVRIDRPSSVDG----IS-RDAMLRNRRIVTADLKSDQGLELALKLIAKAD 77 (359)
T ss_dssp TTTCEEEEEC-CSTHHHHHHHHHHHTTCEEEEEECC---------CC-CCGGGCSCEEEECCTTSHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEcC-CchHHHHHHHHHHHhCCEEEEECCCCCCCc----hh-hhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCC
Confidence 4455666555 355577777888888999997754321111 00 00112345778899998765 557788999
Q ss_pred EEEEcccC
Q 020608 80 GVFHLASP 87 (323)
Q Consensus 80 ~Vih~a~~ 87 (323)
+||++-..
T Consensus 78 v~i~n~~p 85 (359)
T d1x74a1 78 VLIEGYRP 85 (359)
T ss_dssp EEEECSCT
T ss_pred EEEecCCC
Confidence 99999754
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.32 E-value=0.16 Score=37.71 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=31.7
Q ss_pred CCCCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 1 MSKEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 1 m~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
|....++|+|.|| |..|...+..|++.|.+|+++.+.
T Consensus 1 m~~~~~~VvIIGg-GpaGl~aA~~~ar~g~~v~vie~~ 37 (192)
T d1vdca1 1 LETHNTRLCIVGS-GPAAHTAAIYAARAELKPLLFEGW 37 (192)
T ss_dssp CEEEEEEEEEECC-SHHHHHHHHHHHHTTCCCEEECCS
T ss_pred CCcccceEEEECC-CHHHHHHHHHHHHcCCcEEEEEee
Confidence 4445689999996 999999999999999999988654
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=87.22 E-value=0.3 Score=39.50 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=23.0
Q ss_pred ceEEEecc-c-cHH--HHHHHHHHHHCCCEEEEEec
Q 020608 6 EVVCVTGG-S-GCI--GSWLVSLLLERRYTVHATVK 37 (323)
Q Consensus 6 ~~vlItGa-t-G~i--G~~l~~~L~~~g~~V~~~~r 37 (323)
|||+|++| | |.+ ..+|+++|.++||+|..+..
T Consensus 1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~ 36 (351)
T d1f0ka_ 1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGT 36 (351)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 57777663 4 333 33688999999999988764
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=87.11 E-value=0.26 Score=32.70 Aligned_cols=36 Identities=22% Similarity=-0.023 Sum_probs=29.9
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.++|+|+|.|+ |--|..++.+|+...-+|+...|+.
T Consensus 30 f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 30 FVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred cCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecC
Confidence 36899999995 8999999999998877776666654
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.78 E-value=4.7 Score=29.90 Aligned_cols=94 Identities=17% Similarity=0.122 Sum_probs=60.1
Q ss_pred CceEEEeccccHHHHHHHHHHHHCCC---EEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccC----------------
Q 020608 5 AEVVCVTGGSGCIGSWLVSLLLERRY---TVHATVKNLSDERETAHLKALEGADTRLRLFQIDL---------------- 65 (323)
Q Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl---------------- 65 (323)
..+|.|.| -|.-|..++.+|.+.|. +.++++- +. +.+.... ....+..+.-
T Consensus 15 ~~ki~ViG-vGGaG~n~v~~l~~~~~~~v~~iainT---D~---~~L~~~~---~~~ki~ig~~~t~g~Gag~~p~~g~~ 84 (209)
T d2vapa1 15 KAKITVVG-CGGAGNNTITRLKMEGIEGAKTVAINT---DA---QQLIRTK---ADKKILIGKKLTRGLGAGGNPKIGEE 84 (209)
T ss_dssp CCCEEEEE-EHHHHHHHHHHHHHHTCTTEEEEEEES---BH---HHHHTSC---CSEEEECCTTTTTTBCCTTCHHHHHH
T ss_pred CCcEEEEE-eCChHHHHHHHHHHcCCCceEEEEEeC---CH---HHHhcCC---cchhcccccccccccccccchHHHHH
Confidence 46899999 49999999999998764 4455433 22 2222221 1223333321
Q ss_pred ---CCHhHHHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCc
Q 020608 66 ---LDYDAIAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGV 120 (323)
Q Consensus 66 ---~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 120 (323)
.+.+.+.+.++++|.||-+||+... +..-++-.+.+.+++.+.
T Consensus 85 aa~e~~~~I~~~l~~~d~vfi~AGlGGG------------TGsgaapvia~~ake~g~ 130 (209)
T d2vapa1 85 AAKESAEEIKAAIQDSDMVFITCGLGGG------------TGTGSAPVVAEISKKIGA 130 (209)
T ss_dssp HHHHTHHHHHHHHTTCSEEEEEEETTSS------------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCCEEEEEEeCCCC------------ccccHHHHHHHHHHHcCC
Confidence 1335677788899999999998533 223455568888898875
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=86.63 E-value=0.99 Score=32.28 Aligned_cols=75 Identities=19% Similarity=0.125 Sum_probs=41.0
Q ss_pred ceEEEeccccHHHHHHHHH-HHHC-----CCEEEEEecCCCcHHHHHHH-hhccCCCCCeEEEEccCCCHhHHHHHhcCC
Q 020608 6 EVVCVTGGSGCIGSWLVSL-LLER-----RYTVHATVKNLSDERETAHL-KALEGADTRLRLFQIDLLDYDAIAAAVTGC 78 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~-L~~~-----g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (323)
|||.|.|| |.+|..++-. |+.. ..++..++.++.+....... ..... ........ + +..+.++++
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~--~~~~~~~t--~---~~~~~l~~a 72 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVK--DRFKVLIS--D---TFEGAVVDA 72 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHT--TSSEEEEC--S---SHHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhc--cCceEEEe--c---CcccccCCC
Confidence 58999998 5466655533 3221 35899998765432211111 11111 12222221 1 234567899
Q ss_pred CEEEEcccCC
Q 020608 79 TGVFHLASPC 88 (323)
Q Consensus 79 d~Vih~a~~~ 88 (323)
|+||.+|+..
T Consensus 73 DvVVita~~~ 82 (162)
T d1up7a1 73 KYVIFQFRPG 82 (162)
T ss_dssp SEEEECCCTT
T ss_pred CEEEEecccC
Confidence 9999999863
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.15 E-value=0.62 Score=29.68 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=26.2
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCCEEEEEe
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRYTVHATV 36 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (323)
|||||.| +|.=-.+|++.|.+..++|++.-
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~~v~~~p 30 (90)
T d1vkza2 1 VRVHILG-SGGREHAIGWAFAKQGYEVHFYP 30 (90)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCeEEEec
Confidence 6999999 58888899999999999998873
|
| >d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Formyl-CoA transferase species: Oxalobacter formigenes [TaxId: 847]
Probab=85.93 E-value=0.91 Score=38.09 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=66.1
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCCC-cHHHHHHHh------h--ccCCCCCeEEEEccCCCHhH---
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLS-DERETAHLK------A--LEGADTRLRLFQIDLLDYDA--- 70 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~------~--~~~~~~~~~~~~~Dl~~~~~--- 70 (323)
|.+-|||=.+ ...-|-...+.|+..|.+|+=+-+... +... .... . ....+.+-+.+..|+.+++.
T Consensus 4 L~GirVld~~-~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R-~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~ 81 (427)
T d2vjma1 4 LDGINVLDFT-HVQAGPACTQMMGFLGANVIKIERRGSGDMTR-GWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKEL 81 (427)
T ss_dssp TTTCEEEECC-CTTHHHHHHHHHHHTTCEEEEEECTTTCSGGG-GSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHH
T ss_pred CCCCEEEEcC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCccc-ccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHH
Confidence 4566666555 355577788888889999998865321 1111 0000 0 01113355788999998765
Q ss_pred HHHHhcCCCEEEEcccCCccCCCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccccccc
Q 020608 71 IAAAVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSISSIT 133 (323)
Q Consensus 71 ~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~ 133 (323)
+.++++.+|+||++-.........=+++. .++.+ +++||+|.+ +++
T Consensus 82 ~~~Lv~~aDv~i~n~~pg~~~rlGL~~~~---------------l~~~N-P~LI~~sis-gfG 127 (427)
T d2vjma1 82 LEQMIKKADVMVENFGPGALDRMGFTWEY---------------IQELN-PRVILASVK-GYA 127 (427)
T ss_dssp HHHHHHHCSEEEECCSTTHHHHTTCCHHH---------------HHHHC-TTCEEEEEE-SSC
T ss_pred HHHHHHhCCeeeECCCcchHHHcCCCchh---------------hhhhC-Cccceeeee-ccc
Confidence 66778899999999654322111112222 22333 689999876 554
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.36 E-value=2 Score=31.05 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=24.6
Q ss_pred ceEEEeccccHHHHHHHHHHHHC-CCEEEEEe
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER-RYTVHATV 36 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~ 36 (323)
.||.|+| +|.+|+..++.|... +.+|+++.
T Consensus 2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~ 32 (184)
T d1ydwa1 2 IRIGVMG-CADIARKVSRAIHLAPNATISGVA 32 (184)
T ss_dssp EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999 589999999999876 56888664
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=85.26 E-value=0.42 Score=38.12 Aligned_cols=32 Identities=22% Similarity=0.069 Sum_probs=28.9
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
-|+|+|| |..|...+.+|+++|.+|+++.+.+
T Consensus 18 DVlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGS-GGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4899995 9999999999999999999997654
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=85.09 E-value=1.3 Score=33.06 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=27.8
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
..|||++.| ++..+..+.+.|.+.|++|.++.-.+
T Consensus 2 ~~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~ 36 (206)
T d1fmta2 2 ESLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQP 36 (206)
T ss_dssp CCCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 346788887 57889999999999999987766443
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=84.78 E-value=0.26 Score=36.31 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=31.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
.+.++|+|+|| |-.|..-+..|++.|.+|+++.|..
T Consensus 3 ~k~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 3 TKHSKLLILGS-GPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEEEEECC-SHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHHcCCceEEEEeec
Confidence 35678999997 9999999999999999999997654
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=84.64 E-value=0.27 Score=38.54 Aligned_cols=35 Identities=26% Similarity=0.184 Sum_probs=29.9
Q ss_pred CceEEEeccccHHHH-----HHHHHHHHCCCEEEEEecCCC
Q 020608 5 AEVVCVTGGSGCIGS-----WLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 5 ~~~vlItGatG~iG~-----~l~~~L~~~g~~V~~~~r~~~ 40 (323)
|++|.|+| =|++|. +|+..|++.|++|.+++-++.
T Consensus 1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q 40 (269)
T d1cp2a_ 1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 68999998 788886 778899999999999988763
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=84.30 E-value=0.54 Score=35.24 Aligned_cols=32 Identities=13% Similarity=-0.049 Sum_probs=28.6
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
-|+|+|| |+.|...+.++++.|.+|.++.+..
T Consensus 4 DvvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~~ 35 (217)
T d1gesa1 4 DYIAIGG-GSGGIASINRAAMYGQKCALIEAKE 35 (217)
T ss_dssp EEEEECC-SHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence 3799997 9999999999999999999997753
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=84.17 E-value=0.45 Score=39.11 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=27.5
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
|+|.| +|+-|..++.+|++.|++|.++-+.
T Consensus 10 vIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 10 ALVIG-SGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 78999 5999999999999999999999764
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=84.14 E-value=0.51 Score=38.21 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=27.9
Q ss_pred eEEEeccccHHHHHHHHHHHH-----CCCEEEEEecCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLE-----RRYTVHATVKNL 39 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~-----~g~~V~~~~r~~ 39 (323)
-|+|.|| |-.|..++..|++ .|++|+++.|.+
T Consensus 9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKRS 45 (360)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence 3899997 9999999999974 699999998765
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.93 E-value=0.36 Score=36.68 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=30.3
Q ss_pred CceEEEeccccHHHH-----HHHHHHHHCCCEEEEEecCCC
Q 020608 5 AEVVCVTGGSGCIGS-----WLVSLLLERRYTVHATVKNLS 40 (323)
Q Consensus 5 ~~~vlItGatG~iG~-----~l~~~L~~~g~~V~~~~r~~~ 40 (323)
||.|.|+++-|++|. +|+..|+++|.+|.+++-++.
T Consensus 1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~ 41 (232)
T d1hyqa_ 1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 41 (232)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 688999999888886 788899999999999876543
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=83.89 E-value=0.49 Score=39.48 Aligned_cols=32 Identities=16% Similarity=0.023 Sum_probs=24.4
Q ss_pred ceEEEecc------ccHHH---HHHHHHHHHCCCEEEEEec
Q 020608 6 EVVCVTGG------SGCIG---SWLVSLLLERRYTVHATVK 37 (323)
Q Consensus 6 ~~vlItGa------tG~iG---~~l~~~L~~~g~~V~~~~r 37 (323)
||||+.+. +|++| ..|+++|++.||+|+++..
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp 41 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 41 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 57777553 45555 6779999999999998863
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.82 E-value=1.9 Score=32.72 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=50.6
Q ss_pred CCceEEEec-cccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 4 EAEVVCVTG-GSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
.+++||=.| |||+.-++|+.. ... -.|++++.++. ..+.+.......+++.++.+|..++.........+|.++
T Consensus 74 pG~~VLDlGcGsG~~~~~la~~-~~~-g~V~aVDiS~~---~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~ 148 (230)
T d1g8sa_ 74 RDSKILYLGASAGTTPSHVADI-ADK-GIVYAIEYAPR---IMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHH-TTT-SEEEEEESCHH---HHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCEEEEeCEEcCHHHHHHHHh-CCC-CEEEEEeCcHH---HHHHHHHHHhhhcccceEEEeeccCcccccccceeEEee
Confidence 367898888 468888888875 333 49999987642 223333333345678889999998876654444556665
Q ss_pred Ecc
Q 020608 83 HLA 85 (323)
Q Consensus 83 h~a 85 (323)
+.-
T Consensus 149 ~~~ 151 (230)
T d1g8sa_ 149 EDV 151 (230)
T ss_dssp ECC
T ss_pred ccc
Confidence 543
|
| >d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD domain: MrsD species: Bacillus sp. hil-y85/54728 [TaxId: 69002]
Probab=83.71 E-value=0.26 Score=36.35 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=24.4
Q ss_pred CCC-CCceEEEeccccHHH----HHHHHHHHHCCCEEEEEe
Q 020608 1 MSK-EAEVVCVTGGSGCIG----SWLVSLLLERRYTVHATV 36 (323)
Q Consensus 1 m~~-~~~~vlItGatG~iG----~~l~~~L~~~g~~V~~~~ 36 (323)
|++ ++|||+ .|.||.|+ ..+++.|.+.|++|.++.
T Consensus 1 ms~l~~KkIl-lgvTGsiaa~k~~~l~~~L~~~g~eV~vv~ 40 (183)
T d1p3y1_ 1 ISILKDKKLL-IGICGSISSVGISSYLLYFKSFFKEIRVVM 40 (183)
T ss_dssp CTTGGGCEEE-EEECSCGGGGGTHHHHHHHTTTSSEEEEEE
T ss_pred CCCcCCCEEE-EEEeCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 664 678865 55566554 367778878899988875
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.30 E-value=0.3 Score=34.95 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=25.4
Q ss_pred CCceEEEeccccHHHHHHHHHHHHCCCEEE
Q 020608 4 EAEVVCVTGGSGCIGSWLVSLLLERRYTVH 33 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~ 33 (323)
.+++|+|.|| |++|..+++.+++.|.++.
T Consensus 28 ~gkrVvVIGg-G~~g~d~a~~~~r~G~~~~ 56 (162)
T d1ps9a2 28 VGNKVAIIGC-GGIGFDTAMYLSQPGESTS 56 (162)
T ss_dssp CCSEEEEECC-HHHHHHHHHHHTCCSSCGG
T ss_pred cCCceEEEcC-chhHHHHHHHHHHcCCccc
Confidence 4689999997 9999999999999997543
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.29 E-value=0.4 Score=36.45 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=29.5
Q ss_pred CceEEEeccccHHHH-----HHHHHHHHCCCEEEEEecCC
Q 020608 5 AEVVCVTGGSGCIGS-----WLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 5 ~~~vlItGatG~iG~-----~l~~~L~~~g~~V~~~~r~~ 39 (323)
+|.|.|+|+-|++|. +|+..|++.|.+|.+++-+.
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~ 41 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 477999999999887 78888999999999997543
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.29 E-value=0.59 Score=35.40 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=28.8
Q ss_pred ceEEEeccccHHHHHHHHHHHHC--CCEEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLER--RYTVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 39 (323)
.||.|+|| |--|...+++|+++ |++|+++.+.+
T Consensus 2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~ 36 (230)
T d1cjca2 2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL 36 (230)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 58999995 99999999999875 78999997765
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=83.04 E-value=0.6 Score=38.11 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=28.0
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKN 38 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (323)
-|+|.| +|.-|.-++.+|++.|++|+++-+.
T Consensus 6 DviIVG-sG~aG~v~A~~La~~G~kVlvLEaG 36 (379)
T d2f5va1 6 DVVIVG-SGPIGCTYARELVGAGYKVAMFDIG 36 (379)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEC-cCHHHHHHHHHHhhCCCeEEEEecC
Confidence 489999 5999999999999999999999664
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=82.99 E-value=0.59 Score=36.70 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=28.8
Q ss_pred eEEEeccccHHHHHHHHHHHHC-CCEEEEEecCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLER-RYTVHATVKNL 39 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~-g~~V~~~~r~~ 39 (323)
-|+|+|| |.-|...+.+|+++ |++|.++.+.+
T Consensus 35 DViVIGa-GpaGL~aA~~LA~~~G~~V~vlE~~~ 67 (278)
T d1rp0a1 35 DVVVVGA-GSAGLSAAYEISKNPNVQVAIIEQSV 67 (278)
T ss_dssp EEEEECC-SHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred CEEEECC-CHHHHHHHHHHHHccCCeEEEEecCC
Confidence 4999997 99999999999875 99999998765
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=82.93 E-value=0.31 Score=36.65 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=25.7
Q ss_pred ceEEEeccccHHHH-----HHHHHHHHCCCEEEEEe
Q 020608 6 EVVCVTGGSGCIGS-----WLVSLLLERRYTVHATV 36 (323)
Q Consensus 6 ~~vlItGatG~iG~-----~l~~~L~~~g~~V~~~~ 36 (323)
|+++|||-..++|. .|+..|+++|++|.+++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 78999994337776 88999999999999873
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=82.73 E-value=0.77 Score=34.60 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=32.3
Q ss_pred CCCceEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 3 KEAEVVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
+++|+|+|.| +|--|..++.+|++.+.+++.+.|++
T Consensus 30 ~~gK~V~VvG-~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 30 FSGQRVGVIG-TGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCCEEEEEC-CCccHHHHHHHHHhhhcccccccccc
Confidence 4789999999 59999999999999999998888865
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.58 E-value=0.95 Score=33.93 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=50.5
Q ss_pred CCceEEEecc-ccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 4 EAEVVCVTGG-SGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 4 ~~~~vlItGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
.+++||=.|+ +|..-++|++.. ..| +|++++.++..... +.+......++.++.+|..++......+..+|+|+
T Consensus 56 pg~~VLDlGcG~G~~~~~la~~v-~~g-~V~gvDis~~~i~~---a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLADIV-DEG-IIYAVEYSAKPFEK---LLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHT-TTS-EEEEECCCHHHHHH---HHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCEEEEeCCcCCHHHHHHHHhc-cCC-eEEEEeCCHHHHHH---HHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 3578888885 566666666544 445 89999776533222 22221123588999999999887776667788888
Q ss_pred Ecc
Q 020608 83 HLA 85 (323)
Q Consensus 83 h~a 85 (323)
|.-
T Consensus 131 ~~~ 133 (209)
T d1nt2a_ 131 QDI 133 (209)
T ss_dssp ECC
T ss_pred ecc
Confidence 754
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=82.06 E-value=3.9 Score=29.60 Aligned_cols=121 Identities=12% Similarity=0.033 Sum_probs=56.2
Q ss_pred EEEeccccHHHHHHHHHHHHCCCEEEEEecCC-CcHHHH-HHHhhccCCCCCeEEEEccCCCHhHHHHHhcCC-CEEEEc
Q 020608 8 VCVTGGSGCIGSWLVSLLLERRYTVHATVKNL-SDERET-AHLKALEGADTRLRLFQIDLLDYDAIAAAVTGC-TGVFHL 84 (323)
Q Consensus 8 vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-d~Vih~ 84 (323)
+|||||++.==|..+++|+..+.+|+-+.-.. .+.+.. .........+.++..++.-..=.+.+......- -+++.|
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT~~~~D~em~~RI~~Hr~rR~~~w~tiE~~~~l~~~l~~~~~~~~~vLlDc 81 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLITADLAPDDAILLEC 81 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTSCTTSCTTCEEEEEC
T ss_pred EEEECCCCccHHHHHHHHHhcCCCcEEEEccCCCCHHHHHHHHHHHhcCcCCCEEecccccHHHHHHhhcCcccchhhhh
Confidence 69999988877899999987665554333222 122221 111122233456776665321111121212222 355666
Q ss_pred ccCCccC-----C-----CCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEeccc
Q 020608 85 ASPCIVD-----K-----VEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSSI 129 (323)
Q Consensus 85 a~~~~~~-----~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 129 (323)
-...... . ...........-..-...+++++++.. ..+|.+|.=
T Consensus 82 lt~~l~N~l~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~-~~~ViVsnE 135 (180)
T d1c9ka_ 82 ITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCP-AKVVLVTNE 135 (180)
T ss_dssp HHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCC-SEEEEECCC
T ss_pred hhHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHHHHHHHHhCC-CcEEEEecc
Confidence 5432100 0 000111111111223455666666655 588998874
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.63 E-value=0.81 Score=34.35 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=26.9
Q ss_pred ceEEEeccccHHHHHHHHHHHHCCC--EEEEEecCC
Q 020608 6 EVVCVTGGSGCIGSWLVSLLLERRY--TVHATVKNL 39 (323)
Q Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~r~~ 39 (323)
..++|.|| |++|-.++..|.+.|+ +|+++.+.+
T Consensus 5 ~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e~ 39 (213)
T d1m6ia1 5 VPFLLIGG-GTAAFAAARSIRARDPGARVLIVSEDP 39 (213)
T ss_dssp EEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred CCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 45788886 9999999999998875 688887643
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=81.61 E-value=5 Score=31.90 Aligned_cols=78 Identities=14% Similarity=0.017 Sum_probs=45.6
Q ss_pred CCceEEEec-cccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCCCCCeEEEEccCCCHh-HHHHHhcCCCEE
Q 020608 4 EAEVVCVTG-GSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGADTRLRLFQIDLLDYD-AIAAAVTGCTGV 81 (323)
Q Consensus 4 ~~~~vlItG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~d~V 81 (323)
++++||=.+ ++|..+.+++ ..+.+|++++.++......+...+.... .+++++.+|..+.. .+...-+.+|.|
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a----~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~V 219 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLA----LGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLV 219 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHH----HHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeeeccCCCCcHHHHHHH----hcCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEE
Confidence 456666443 4666655443 3467999998875443333332222221 36889999986632 233333468999
Q ss_pred EEccc
Q 020608 82 FHLAS 86 (323)
Q Consensus 82 ih~a~ 86 (323)
+....
T Consensus 220 i~DpP 224 (318)
T d1wxxa2 220 VLDPP 224 (318)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 98764
|
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=80.74 E-value=0.79 Score=39.03 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=19.3
Q ss_pred ccHHH---HHHHHHHHHCCCEEEEEe
Q 020608 14 SGCIG---SWLVSLLLERRYTVHATV 36 (323)
Q Consensus 14 tG~iG---~~l~~~L~~~g~~V~~~~ 36 (323)
+|++| .+|+++|+++||+|.++.
T Consensus 16 ~GGl~~vv~~La~~L~~~Gh~V~Vi~ 41 (477)
T d1rzua_ 16 TGGLADVVGALPIALEAHGVRTRTLI 41 (477)
T ss_dssp SSHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47766 678999999999999985
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=80.42 E-value=5 Score=28.64 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=49.1
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCCCcHHHHHHHhhccCC----CCCeE------------EEEccCCCHhH
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNLSDERETAHLKALEGA----DTRLR------------LFQIDLLDYDA 70 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~------------~~~~Dl~~~~~ 70 (323)
||.|-| -|-||+.+.+.+++++.+|+++.-...+.+....+.+.... ...+. +....-.++++
T Consensus 2 kIgING-fGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~ 80 (169)
T d1dssg1 2 KIGING-FGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN 80 (169)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred eEEEEC-CcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence 677888 79999999999999999988876544455555555443211 11111 11111224443
Q ss_pred HHHHhcCCCEEEEcccCC
Q 020608 71 IAAAVTGCTGVFHLASPC 88 (323)
Q Consensus 71 ~~~~~~~~d~Vih~a~~~ 88 (323)
+.=.-.++|+|+-|.|..
T Consensus 81 i~W~~~gvD~ViEcTG~f 98 (169)
T d1dssg1 81 IPWSKAGAEYIVESTGVF 98 (169)
T ss_dssp CCHHHHTCCEEEECSSSC
T ss_pred CCccccCCCEEEecCceE
Confidence 221122789999999873
|
| >d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Lac-repressor (lacR) core (C-terminal domain) species: Escherichia coli [TaxId: 562]
Probab=80.28 E-value=6.1 Score=30.17 Aligned_cols=108 Identities=19% Similarity=0.142 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHCCCEEEEEecCCCcHH-HHHHHhhccCCCCCeEEEEccCCCHhHHHHHhc--CCCEEEEcccCCccC
Q 020608 15 GCIGSWLVSLLLERRYTVHATVKNLSDER-ETAHLKALEGADTRLRLFQIDLLDYDAIAAAVT--GCTGVFHLASPCIVD 91 (323)
Q Consensus 15 G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih~a~~~~~~ 91 (323)
.-+-..+.+++.++|++|.+..-..++.+ ..+.++.+.....+-.++..+..+.+.+...+. ++=+|+.....
T Consensus 16 ~~i~~~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~~~~vdgiIl~~~~~~~~~~~~~~~~~~iPvV~~d~~~---- 91 (271)
T d1jyea_ 16 SQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSD---- 91 (271)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSCT----
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeccccCchhHHHHHHHhcCCCeeeeeccc----
Confidence 34667788888899999877654333333 234444443323333345555554444433333 34445443211
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHHhhCCcCEEEEecc
Q 020608 92 KVEDPQNQLLNPAVKGTVNVLTAAKALGVKRVVVTSS 128 (323)
Q Consensus 92 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 128 (323)
........-.|..+...+++...+.|.+++.++++
T Consensus 92 --~~~~~~V~~D~~~~~~~~~~~L~~~G~~~i~~i~~ 126 (271)
T d1jyea_ 92 --QTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAG 126 (271)
T ss_dssp --TSSSCEEEECHHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred --cccCCccccchhhccccceeeeecccccccccccc
Confidence 11122233457778888888887778889998874
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=80.22 E-value=2.1 Score=30.26 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=37.7
Q ss_pred ceEEEeccccHHHHH-HHHHHHHC-CCEEEEEe-cCCCcHHHHHHHhhccCCCCCeEEEEccCCCHhHHHHHhcCCCEEE
Q 020608 6 EVVCVTGGSGCIGSW-LVSLLLER-RYTVHATV-KNLSDERETAHLKALEGADTRLRLFQIDLLDYDAIAAAVTGCTGVF 82 (323)
Q Consensus 6 ~~vlItGatG~iG~~-l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 82 (323)
++|.|.| +|.+|+. .+..|... +.+++++. +++..... ..+.. + .+..+ .++.+.+++|+|+
T Consensus 2 iri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~--~~~~~-----~-----~~~~~--~~~~l~~~~D~V~ 66 (164)
T d1tlta1 2 LRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALP--ICESW-----R-----IPYAD--SLSSLAASCDAVF 66 (164)
T ss_dssp EEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHH--HHHHH-----T-----CCBCS--SHHHHHTTCSEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhh--hhhcc-----c-----ccccc--cchhhhhhccccc
Confidence 5899999 5999975 46666554 67877665 44433222 11221 1 11221 2444567899998
Q ss_pred Ecc
Q 020608 83 HLA 85 (323)
Q Consensus 83 h~a 85 (323)
-+.
T Consensus 67 I~t 69 (164)
T d1tlta1 67 VHS 69 (164)
T ss_dssp ECS
T ss_pred ccc
Confidence 775
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=80.22 E-value=1.7 Score=31.54 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=22.8
Q ss_pred CCceEEEeccccHHHHHH-HHHHHHCC--CEEEEEe
Q 020608 4 EAEVVCVTGGSGCIGSWL-VSLLLERR--YTVHATV 36 (323)
Q Consensus 4 ~~~~vlItGatG~iG~~l-~~~L~~~g--~~V~~~~ 36 (323)
+..+|.|.| +|.+|+.+ +..|.+.+ .+|+++.
T Consensus 2 kkirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~ 36 (181)
T d1zh8a1 2 RKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVT 36 (181)
T ss_dssp CCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEE
T ss_pred CCcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 456899999 69999864 66676543 4777664
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=80.02 E-value=0.78 Score=36.76 Aligned_cols=32 Identities=19% Similarity=0.051 Sum_probs=28.8
Q ss_pred eEEEeccccHHHHHHHHHHHHCCCEEEEEecCC
Q 020608 7 VVCVTGGSGCIGSWLVSLLLERRYTVHATVKNL 39 (323)
Q Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (323)
-|+|.|+ |.-|...+.+|+++|.+|+++.+.+
T Consensus 25 DVvVIG~-G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGS-GGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp SEEEECS-SHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4899995 9999999999999999999997754
|