Citrus Sinensis ID: 020628

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQDMHPLSAHS
ccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHcccccccEEEEEEcccEEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHcccEEEcEEEEEEEccccEEEEEEccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccc
cHHHHHHHHHHHHHHHHHHcccccccccccEHccccccHHHHccccccccHHcccccccHEHEHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccEEEEEEEEEccHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHHHcccEEEEEEEEEEEccccEEEEEEEccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccHHcccHHHHHHHHHHHHHHHHHcccccc
macfrsakhpfriFFYNRLsaatnskygystcaskgtpvyqarQIKDLFsfkylnpkssFALISRnfsdqapaaTEQVNLIKQLREqtsapmkdVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVaenvsqpvsglfpvgpeyleglklnldhpkiggetTVQNAITEVAAIMGENVKLRRGFllsasspgvvstylhtspqsglgrIAGLLSLevedgsssfdplKRVGSELAMHIVAQKPLFLTKELVSADALENEREILksqdmhplsahs
macfrsakhpfRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLReqtsapmkdVKLALVDCDWDIEAALKELRKrgkvlaskkssrtaTEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEReilksqdmhplsahs
MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYlalalakqalvaENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQDMHPLSAHS
******AKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNF***********NLI***********KDVKLALVDCDWDIEAALKELR******************LLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEV**********KRVGSELAMHIVAQKPLFLTKELVS***********************
*********PFRIFFYNR*************CASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILK****H******
MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK**************TEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKS**********
MACFRSAKHPFRIFFYNRLSAA*******ST**SKGTPVYQARQIKDLFSFK*LNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQDMHP*****
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ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQDMHPLSAHS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query323 2.2.26 [Sep-21-2011]
B9SEZ6379 Elongation factor Ts, mit N/A no 0.907 0.773 0.671 1e-117
Q5XF75395 Elongation factor Ts, mit yes no 0.959 0.784 0.638 1e-110
Q6ZJS7366 Elongation factor Ts, mit yes no 0.907 0.800 0.576 9e-96
B8BAI9385 Elongation factor Ts, mit N/A no 0.773 0.649 0.650 5e-94
B4FHF0379 Elongation factor Ts, mit N/A no 0.761 0.649 0.656 1e-92
Q11IJ7307 Elongation factor Ts OS=M yes no 0.659 0.693 0.385 1e-34
Q9XCM5307 Elongation factor Ts OS=B yes no 0.659 0.693 0.371 3e-34
B3PYP3308 Elongation factor Ts OS=R yes no 0.662 0.694 0.370 1e-33
Q6G5C8307 Elongation factor Ts OS=B yes no 0.659 0.693 0.376 1e-33
Q1MH53308 Elongation factor Ts OS=R yes no 0.662 0.694 0.370 1e-33
>sp|B9SEZ6|EFTS_RICCO Elongation factor Ts, mitochondrial OS=Ricinus communis GN=EFTS PE=3 SV=1 Back     alignment and function desciption
 Score =  420 bits (1079), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/314 (67%), Positives = 248/314 (78%), Gaps = 21/314 (6%)

Query: 1   MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSF 60
           MA +R+A+ P ++  ++RL    N +  YS+ A K                     +S+F
Sbjct: 1   MALYRTARRPLQMMLFSRLG---NPEQNYSSWARKDAS------------------QSAF 39

Query: 61  ALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVL 120
            +  R FS  APAA EQ++LIKQLRE+TSAP+KDVK +LVDC+WDIEAA K+LRKRGKVL
Sbjct: 40  GMFVRLFSAHAPAAAEQMSLIKQLRERTSAPIKDVKASLVDCNWDIEAAQKDLRKRGKVL 99

Query: 121 ASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQ 180
           ASKKS R ATEGLLALAQNE KAA+IELNCETDFV+RN+IFQ LAL+LAKQAL+ EN +Q
Sbjct: 100 ASKKSGRAATEGLLALAQNEGKAALIELNCETDFVARNDIFQCLALSLAKQALLTENTAQ 159

Query: 181 PVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPG 240
             SG+ PVGPE LE L +NL+HPKI GETTVQNAITEVAA+MGENVKLRRGF++S S PG
Sbjct: 160 QASGIHPVGPECLEDLMINLEHPKISGETTVQNAITEVAAMMGENVKLRRGFVMSTSLPG 219

Query: 241 VVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVS 300
           V+STYLHTSPQ GLGRIAGLLSLE+EDG+S  D L  VGSELAMH+VA KPLFLTKELVS
Sbjct: 220 VLSTYLHTSPQPGLGRIAGLLSLEIEDGNSQLDVLHHVGSELAMHVVAAKPLFLTKELVS 279

Query: 301 ADALENEREILKSQ 314
           +DALE+EREILKSQ
Sbjct: 280 SDALESEREILKSQ 293
Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.
Ricinus communis (taxid: 3988)
>sp|Q5XF75|EFTS_ARATH Elongation factor Ts, mitochondrial OS=Arabidopsis thaliana GN=EFTS PE=2 SV=1 Back     alignment and function description
>sp|Q6ZJS7|EFTS_ORYSJ Elongation factor Ts, mitochondrial OS=Oryza sativa subsp. japonica GN=EFTS PE=2 SV=1 Back     alignment and function description
>sp|B8BAI9|EFTS_ORYSI Elongation factor Ts, mitochondrial OS=Oryza sativa subsp. indica GN=EFTS PE=3 SV=2 Back     alignment and function description
>sp|B4FHF0|EFTS_MAIZE Elongation factor Ts, mitochondrial OS=Zea mays GN=EFTS PE=2 SV=1 Back     alignment and function description
>sp|Q11IJ7|EFTS_MESSB Elongation factor Ts OS=Mesorhizobium sp. (strain BNC1) GN=tsf PE=3 SV=1 Back     alignment and function description
>sp|Q9XCM5|EFTS_BARQU Elongation factor Ts OS=Bartonella quintana (strain Toulouse) GN=tsf PE=3 SV=2 Back     alignment and function description
>sp|B3PYP3|EFTS_RHIE6 Elongation factor Ts OS=Rhizobium etli (strain CIAT 652) GN=tsf PE=3 SV=1 Back     alignment and function description
>sp|Q6G5C8|EFTS_BARHE Elongation factor Ts OS=Bartonella henselae (strain ATCC 49882 / Houston 1) GN=tsf PE=3 SV=1 Back     alignment and function description
>sp|Q1MH53|EFTS_RHIL3 Elongation factor Ts OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tsf PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
255567168379 elongation factor ts, putative [Ricinus 0.907 0.773 0.671 1e-115
297809333394 hypothetical protein ARALYDRAFT_489950 [ 0.959 0.786 0.640 1e-110
449528901315 PREDICTED: elongation factor Ts, mitocho 0.969 0.993 0.648 1e-108
42566427395 putative translation elongation factor T 0.959 0.784 0.638 1e-108
449445955401 PREDICTED: elongation factor Ts, mitocho 0.969 0.780 0.642 1e-107
224129270323 predicted protein [Populus trichocarpa] 0.733 0.733 0.784 1e-102
225445569378 PREDICTED: elongation factor Ts, mitocho 0.904 0.772 0.627 1e-102
3600047398 similar to elongation factor EF-Ts [Arab 0.944 0.766 0.606 1e-101
4850291415 putative translation elongation factor t 0.944 0.734 0.576 2e-97
350539363391 ethylene-responsive elongation factor EF 0.944 0.780 0.640 6e-96
>gi|255567168|ref|XP_002524565.1| elongation factor ts, putative [Ricinus communis] gi|313118247|sp|B9SEZ6.1|EFTS_RICCO RecName: Full=Elongation factor Ts, mitochondrial; Short=EF-Ts; Short=EF-TsMt; Flags: Precursor gi|223536118|gb|EEF37773.1| elongation factor ts, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/314 (67%), Positives = 248/314 (78%), Gaps = 21/314 (6%)

Query: 1   MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSF 60
           MA +R+A+ P ++  ++RL    N +  YS+ A K                     +S+F
Sbjct: 1   MALYRTARRPLQMMLFSRLG---NPEQNYSSWARKDAS------------------QSAF 39

Query: 61  ALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVL 120
            +  R FS  APAA EQ++LIKQLRE+TSAP+KDVK +LVDC+WDIEAA K+LRKRGKVL
Sbjct: 40  GMFVRLFSAHAPAAAEQMSLIKQLRERTSAPIKDVKASLVDCNWDIEAAQKDLRKRGKVL 99

Query: 121 ASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQ 180
           ASKKS R ATEGLLALAQNE KAA+IELNCETDFV+RN+IFQ LAL+LAKQAL+ EN +Q
Sbjct: 100 ASKKSGRAATEGLLALAQNEGKAALIELNCETDFVARNDIFQCLALSLAKQALLTENTAQ 159

Query: 181 PVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPG 240
             SG+ PVGPE LE L +NL+HPKI GETTVQNAITEVAA+MGENVKLRRGF++S S PG
Sbjct: 160 QASGIHPVGPECLEDLMINLEHPKISGETTVQNAITEVAAMMGENVKLRRGFVMSTSLPG 219

Query: 241 VVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVS 300
           V+STYLHTSPQ GLGRIAGLLSLE+EDG+S  D L  VGSELAMH+VA KPLFLTKELVS
Sbjct: 220 VLSTYLHTSPQPGLGRIAGLLSLEIEDGNSQLDVLHHVGSELAMHVVAAKPLFLTKELVS 279

Query: 301 ADALENEREILKSQ 314
           +DALE+EREILKSQ
Sbjct: 280 SDALESEREILKSQ 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297809333|ref|XP_002872550.1| hypothetical protein ARALYDRAFT_489950 [Arabidopsis lyrata subsp. lyrata] gi|297318387|gb|EFH48809.1| hypothetical protein ARALYDRAFT_489950 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449528901|ref|XP_004171440.1| PREDICTED: elongation factor Ts, mitochondrial-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|42566427|ref|NP_192850.2| putative translation elongation factor Ts [Arabidopsis thaliana] gi|75287865|sp|Q5XF75.1|EFTS_ARATH RecName: Full=Elongation factor Ts, mitochondrial; Short=EF-Ts; Short=EF-TsMt; Flags: Precursor gi|52627103|gb|AAU84678.1| At4g11120 [Arabidopsis thaliana] gi|55167888|gb|AAV43776.1| At4g11120 [Arabidopsis thaliana] gi|332657575|gb|AEE82975.1| putative translation elongation factor Ts [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449445955|ref|XP_004140737.1| PREDICTED: elongation factor Ts, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224129270|ref|XP_002320543.1| predicted protein [Populus trichocarpa] gi|222861316|gb|EEE98858.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225445569|ref|XP_002282316.1| PREDICTED: elongation factor Ts, mitochondrial [Vitis vinifera] gi|297738982|emb|CBI28227.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|3600047|gb|AAC35534.1| similar to elongation factor EF-Ts [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4850291|emb|CAB43047.1| putative translation elongation factor ts [Arabidopsis thaliana] gi|7267811|emb|CAB81213.1| putative translation elongation factor ts [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|350539363|ref|NP_001234645.1| ethylene-responsive elongation factor EF-Ts precursor [Solanum lycopersicum] gi|5669636|gb|AAD46403.1|AF096247_1 ethylene-responsive elongation factor EF-Ts precursor [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
TAIR|locus:2136158395 AT4G11120 [Arabidopsis thalian 0.959 0.784 0.612 4.8e-94
TIGR_CMR|ECH_0515288 ECH_0515 "translation elongati 0.263 0.295 0.458 2.2e-28
DICTYBASE|DDB_G0286399355 tsfm "elongation factor Ts" [D 0.739 0.673 0.278 9.7e-25
TIGR_CMR|SPO_1975291 SPO_1975 "translation elongati 0.256 0.285 0.493 1.5e-23
TIGR_CMR|BA_3964295 BA_3964 "translation elongatio 0.272 0.298 0.455 2.4e-22
UNIPROTKB|Q9KPV3280 tsf "Elongation factor Ts" [Vi 0.253 0.292 0.439 3.4e-20
TIGR_CMR|VC_2259280 VC_2259 "elongation factor Ts" 0.253 0.292 0.439 3.4e-20
TIGR_CMR|CPS_1554282 CPS_1554 "translation elongati 0.253 0.290 0.414 1.6e-18
UNIPROTKB|P0A6P1283 tsf [Escherichia coli K-12 (ta 0.260 0.296 0.392 2.6e-17
TIGR_CMR|CHY_1786217 CHY_1786 "translation elongati 0.256 0.382 0.423 5.8e-17
TAIR|locus:2136158 AT4G11120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 193/315 (61%), Positives = 238/315 (75%)

Query:     1 MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSF 60
             MA  R+ + P  +F+Y+ +S+  +S   YST ASK   +    Q K      Y +    F
Sbjct:     1 MAFARAVRRPIGVFYYS-VSSRFSSGNEYSTVASKFETL---SQYKSSVPSGYTSLVRGF 56

Query:    61 ALISRNFSDQAP-AATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKV 119
                 R+FS +AP A ++Q++LIKQLRE+TSAP+KDVK +LV+C+WD+EAA K+LRKRGKV
Sbjct:    57 GNFIRSFSSEAPPAVSDQMSLIKQLRERTSAPIKDVKASLVECNWDLEAAQKDLRKRGKV 116

Query:   120 LASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVS 179
             LASKKSSRTA EG+LA+AQNE K AVIELNCETDFV+RNEIFQY            E+ S
Sbjct:   117 LASKKSSRTAAEGMLAVAQNEGKVAVIELNCETDFVARNEIFQYLALAMAKHALLVESSS 176

Query:   180 QPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSP 239
             Q VSG+FP GPE  E  KLNLDHPK+ GETTV NA+TEVAAIMGENVK RRGFL+S SS 
Sbjct:   177 QQVSGVFPFGPELFEEFKLNLDHPKVNGETTVSNAVTEVAAIMGENVKFRRGFLMSKSSA 236

Query:   240 GVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELV 299
             GV+S YLHTSPQ GLGRIAG++SLEVE  ++  + ++RVGSELAMH+VA KPLFL+K+LV
Sbjct:   237 GVLSAYLHTSPQPGLGRIAGIVSLEVEGENTQLEAIQRVGSELAMHVVAAKPLFLSKDLV 296

Query:   300 SADALENEREILKSQ 314
             S++A+ NEREILKSQ
Sbjct:   297 SSEAMANEREILKSQ 311
GO:0003746 "translation elongation factor activity" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006414 "translational elongation" evidence=IEA;ISS
TIGR_CMR|ECH_0515 ECH_0515 "translation elongation factor Ts" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286399 tsfm "elongation factor Ts" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1975 SPO_1975 "translation elongation factor Ts" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3964 BA_3964 "translation elongation factor Ts" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPV3 tsf "Elongation factor Ts" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2259 VC_2259 "elongation factor Ts" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1554 CPS_1554 "translation elongation factor Ts" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6P1 tsf [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1786 CHY_1786 "translation elongation factor Ts" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XF75EFTS_ARATHNo assigned EC number0.63800.95970.7848yesno
Q6ZJS7EFTS_ORYSJNo assigned EC number0.57640.90710.8005yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
PRK09377290 PRK09377, tsf, elongation factor Ts; Provisional 2e-63
COG0264296 COG0264, Tsf, Translation elongation factor Ts [Tr 2e-55
TIGR00116291 TIGR00116, tsf, translation elongation factor Ts 9e-38
PRK12332198 PRK12332, tsf, elongation factor Ts; Reviewed 1e-30
CHL00098200 CHL00098, tsf, elongation factor Ts 7e-26
pfam00889134 pfam00889, EF_TS, Elongation factor TS 6e-13
PRK12332198 PRK12332, tsf, elongation factor Ts; Reviewed 2e-09
pfam00889134 pfam00889, EF_TS, Elongation factor TS 6e-08
pfam0062737 pfam00627, UBA, UBA/TS-N domain 0.001
>gnl|CDD|236491 PRK09377, tsf, elongation factor Ts; Provisional Back     alignment and domain information 
 Score =  202 bits (516), Expect = 2e-63
 Identities = 97/235 (41%), Positives = 134/235 (57%), Gaps = 32/235 (13%)

Query: 80  LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQN 139
           L+K+LRE+T A M D K AL + D DIE A++ LRK+G   A+KK+ R A EGL+A   +
Sbjct: 8   LVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAAKVD 67

Query: 140 ESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLN 199
            +K  ++E+N ETDFV++NE FQ LA  +A+ AL A              P  +E L   
Sbjct: 68  GNKGVLVEVNSETDFVAKNEDFQALANEVAEAALAA-------------KPADVEALL-- 112

Query: 200 LDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAG 259
               K+ G  TV+ A TE+ A +GEN+ LRR   L     GVV +YLH     G GRI  
Sbjct: 113 --ALKLDGG-TVEEARTELIAKIGENISLRRFARLEKDG-GVVGSYLH-----GGGRIGV 163

Query: 260 LLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQ 314
           L++LE  D        + +  ++AMHI A  P +L++E V A+ +E EREI K Q
Sbjct: 164 LVALEGGD--------EELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQ 210

Length = 290
>gnl|CDD|223342 COG0264, Tsf, Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232832 TIGR00116, tsf, translation elongation factor Ts Back     alignment and domain information
>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed Back     alignment and domain information
>gnl|CDD|214362 CHL00098, tsf, elongation factor Ts Back     alignment and domain information
>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS Back     alignment and domain information
>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed Back     alignment and domain information
>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS Back     alignment and domain information
>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 323
COG0264296 Tsf Translation elongation factor Ts [Translation, 100.0
TIGR00116290 tsf translation elongation factor Ts. This protein 100.0
PRK09377290 tsf elongation factor Ts; Provisional 100.0
KOG1071340 consensus Mitochondrial translation elongation fac 100.0
PRK12332198 tsf elongation factor Ts; Reviewed 100.0
CHL00098200 tsf elongation factor Ts 100.0
PF00889221 EF_TS: Elongation factor TS; InterPro: IPR014039 T 100.0
PF00889221 EF_TS: Elongation factor TS; InterPro: IPR014039 T 99.62
PRK12332198 tsf elongation factor Ts; Reviewed 99.61
TIGR00116290 tsf translation elongation factor Ts. This protein 99.61
CHL00098200 tsf elongation factor Ts 99.6
PRK09377290 tsf elongation factor Ts; Provisional 99.56
COG0264296 Tsf Translation elongation factor Ts [Translation, 99.56
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 98.36
PRK06369115 nac nascent polypeptide-associated complex protein 97.48
TIGR00264116 alpha-NAC-related protein. This hypothetical prote 97.38
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 97.27
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 97.19
KOG1071 340 consensus Mitochondrial translation elongation fac 95.68
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 95.32
PF0394351 TAP_C: TAP C-terminal domain; InterPro: IPR005637 94.41
COG1308122 EGD2 Transcription factor homologous to NACalpha-B 93.85
smart0080463 TAP_C C-terminal domain of vertebrate Tap protein. 93.63
PF0054268 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal 90.37
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 88.23
PRK0677193 hypothetical protein; Provisional 86.53
PF0697260 DUF1296: Protein of unknown function (DUF1296); In 81.3
TIGR00855126 L12 ribosomal protein L7/L12. THis model resembles 80.56
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-64  Score=470.78  Aligned_cols=212  Identities=42%  Similarity=0.575  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhchhhhcccccccccCCceEEEec--CCeEEEEEEecCCchh
Q 020628           78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQN--ESKAAVIELNCETDFV  155 (323)
Q Consensus        78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G~a~A~Kr~~R~a~EGlV~~yv~--~~~avlVElncETDFV  155 (323)
                      +++||+||++||+|||||||||+|++||+|+|++|||++|+++|.||++|+++||+|..+++  +++|+|||||||||||
T Consensus         6 a~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETDFV   85 (296)
T COG0264           6 AALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETDFV   85 (296)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEeccccce
Confidence            67999999999999999999999999999999999999999999999999999999999995  5599999999999999


Q ss_pred             hhcHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcccccCCCCCCCCcccHHHHHHHHHHhhccceEEeEEEEee
Q 020628          156 SRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLS  235 (323)
Q Consensus       156 Arn~~F~~Lak~IA~~iaa~~~~~p~~~~~~~v~~e~l~~~~~lldq~~id~~~TV~d~i~e~ia~~GEnI~L~Rf~r~~  235 (323)
                      |+|+.|+.|+++|+.+++...+.          +.|.+...       +++++.||++.+..+++++||||.|||+..++
T Consensus        86 AkN~~F~~l~~~ia~~~l~~~~~----------~ve~l~~~-------~~~~~~tv~e~~~~~~AkIGENi~lRR~~~~~  148 (296)
T COG0264          86 AKNAEFQELANKIAKAALEKKPA----------DVEELKAA-------FEPGGKTVEEEIAALIAKIGENISLRRFAVLE  148 (296)
T ss_pred             eCChhHHHHHHHHHHHHHHhCcc----------cHHHHHhh-------hcccCccHHHHHHHHHHHhccceeEEEEEEee
Confidence            99999999999999999988732          23555432       23457899999999999999999999999998


Q ss_pred             ecCCCeeEEEecCCCCCCCCcEEEEEEEeecCCCCCCchhHHHHHHHHHHHhhcCCcccCcCCCCHHHHHHHHHHHHHhh
Q 020628          236 ASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQD  315 (323)
Q Consensus       236 ~~~~~~v~~Y~H~~~~~~~Grig~LV~l~~~~~~~~~~~~~~la~~IAmHIvA~~P~~ls~~~Vp~~vle~Er~i~~~qa  315 (323)
                      ..+ +.+++|+|++     ||||+||.+++.+      ...++|++|||||||++|+||++++||++++++||+|+.+|+
T Consensus       149 ~~~-~~v~~Y~H~~-----griGVlv~~~~~~------~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er~i~~~~~  216 (296)
T COG0264         149 AGD-GVVGSYLHGN-----GRIGVLVALKGGA------ADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKEREIFLAQL  216 (296)
T ss_pred             cCc-ccEEEEEeCC-----CcEEEEEEEeccc------hHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHH
Confidence            544 7899999998     9999999999751      246899999999999999999999999999999999999977


Q ss_pred             cCc
Q 020628          316 MHP  318 (323)
Q Consensus       316 ~~~  318 (323)
                      +.+
T Consensus       217 ~~~  219 (296)
T COG0264         217 KAE  219 (296)
T ss_pred             Hhc
Confidence            654

>TIGR00116 tsf translation elongation factor Ts Back     alignment and domain information
>PRK09377 tsf elongation factor Ts; Provisional Back     alignment and domain information
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12332 tsf elongation factor Ts; Reviewed Back     alignment and domain information
>CHL00098 tsf elongation factor Ts Back     alignment and domain information
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>PRK12332 tsf elongation factor Ts; Reviewed Back     alignment and domain information
>TIGR00116 tsf translation elongation factor Ts Back     alignment and domain information
>CHL00098 tsf elongation factor Ts Back     alignment and domain information
>PRK09377 tsf elongation factor Ts; Provisional Back     alignment and domain information
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed Back     alignment and domain information
>TIGR00264 alpha-NAC-related protein Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1) Back     alignment and domain information
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription] Back     alignment and domain information
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein Back     alignment and domain information
>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PRK06771 hypothetical protein; Provisional Back     alignment and domain information
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function Back     alignment and domain information
>TIGR00855 L12 ribosomal protein L7/L12 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
1aip_C196 Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt 2e-19
3agp_A 1289 Structure Of Viral Polymerase Form I Length = 1289 1e-18
1efu_B282 Elongation Factor Complex Ef-TuEF-Ts From Escherich 1e-18
3mmp_A 678 Structure Of The Qb Replicase, An Rna-Dependent Rna 1e-18
1xb2_B291 Crystal Structure Of Bos Taurus Mitochondrial Elong 2e-11
1tfe_A145 Dimerization Domain Of Ef-Ts From T. Thermophilus L 3e-04
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196 Back     alignment and structure 
Iteration: 1

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 77  QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLA- 135
           Q+ LIK+LRE T A M DVK AL D  WD E A++ LR+RG + A+KK+ R A EG++  
Sbjct: 3   QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGH 62
Query: 136 -LAQNESKAAVIELNCETDFVSRNEIFQ 162
            +  N+    ++ELNCETDFV+RNE+FQ
Sbjct: 63  YIHHNQRVGVLVELNCETDFVARNELFQ 90
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 Back     alignment and structure
>pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 282 Back     alignment and structure
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 Back     alignment and structure
>pdb|1XB2|B Chain B, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 291 Back     alignment and structure
>pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
1xb2_B291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 5e-62
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 3e-23
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 1e-14
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 1e-18
1tfe_A145 Elongation factor TS; 1.70A {Thermus thermophilus} 4e-15
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Length = 291 Back     alignment and structure
 Score =  198 bits (505), Expect = 5e-62
 Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 15/228 (6%)

Query: 80  LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVL----ASKKSSRTATEGLLA 135
           L+ +LR +T     + K AL  C  D++ A   L K+ +      A++   R   EGL+ 
Sbjct: 7   LLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIG 66

Query: 136 LAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEG 195
           L Q      ++E+NCETDFVSRN  FQ L   +A   L   +       L      +L  
Sbjct: 67  LLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTL--LHCQNLKDQLSTYSKGFLNS 124

Query: 196 LKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSG-- 253
            +L+        E ++++ +      +GEN+ L+R   +   +   V +Y+H +  S   
Sbjct: 125 SELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPSL 184

Query: 254 ----LGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKE 297
               LG+   L+  E  +       L  +G  L  H+V   PL +   
Sbjct: 185 HNLVLGKYGALVICETSELK---ANLADLGRRLGQHVVGMAPLSVGSL 229
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196 Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196 Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 Back     alignment and structure
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Length = 145 Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Length = 64 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
1xb2_B291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 100.0
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 100.0
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 100.0
1tfe_A145 Elongation factor TS; 1.70A {Thermus thermophilus} 99.94
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 99.78
1tfe_A145 Elongation factor TS; 1.70A {Thermus thermophilus} 99.68
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 99.66
1xb2_B291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 99.52
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 99.27
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 97.55
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 97.54
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 97.08
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 96.81
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 96.79
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 96.71
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 96.57
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 96.56
2dna_A67 Unnamed protein product; ubiquitin associated doma 96.53
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 96.5
1wji_A63 Tudor domain containing protein 3; UBA domain, str 96.44
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 96.43
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 96.42
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 96.29
1tr8_A102 Conserved protein (MTH177); chaperones, nascent po 96.2
2dag_A74 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 96.06
2dai_A83 Ubadc1, ubiquitin associated domain containing 1; 95.98
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 95.87
1wiv_A73 UBP14, ubiquitin-specific protease 14; ubiquitin a 95.77
2ekk_A47 UBA domain from E3 ubiquitin-protein ligase HUWE1; 95.68
1whc_A64 RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain 95.65
1oai_A59 Nuclear RNA export factor; nuclear transport, nucl 95.5
2crn_A64 Ubash3A protein; compact three-helix bundle, struc 95.38
2dkl_A85 Trinucleotide repeat containing 6C protein; TNRC6C 95.36
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 95.22
2jp7_A57 MRNA export factor MEX67; solution MEX67, UBA, tra 95.15
1wgn_A63 UBAP1, ubiquitin associated protein; ubiquitin ass 95.03
2cwb_A108 Chimera of immunoglobulin G binding protein G and 95.0
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 94.97
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 94.94
1vek_A84 UBP14, ubiquitin-specific protease 14, putative; U 94.93
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 94.83
2lva_A129 Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubi 93.5
1vdl_A80 Ubiquitin carboxyl-terminal hydrolase 25; UBA doma 93.69
1dv0_A47 DNA repair protein HHR23A; helical bundle, DNA bin 93.68
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 92.89
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 92.88
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 92.86
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 91.89
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 91.73
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 91.12
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 89.32
2ooa_A52 E3 ubiquitin-protein ligase CBL-B; alpha-helical d 88.36
2dzl_A66 Protein FAM100B; UBA-like domain, structural genom 88.31
2d9s_A53 CBL E3 ubiquitin protein ligase; UBA domain, dimer 88.1
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 87.67
2oo9_A46 E3 ubiquitin-protein ligase CBL; alpha-helical dom 85.59
1ctf_A74 Ribosomal protein L7/L12; 1.70A {Escherichia coli} 82.89
2juj_A56 E3 ubiquitin-protein ligase CBL; alpha helix, UBA 82.02
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Back     alignment and structure
Probab=100.00  E-value=1.2e-61  Score=458.68  Aligned_cols=213  Identities=28%  Similarity=0.353  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH----hchhhhcccccccccCCceEEEecCCeEEEEEEecCC
Q 020628           77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK----RGKVLASKKSSRTATEGLLALAQNESKAAVIELNCET  152 (323)
Q Consensus        77 ~~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk----~G~a~A~Kr~~R~a~EGlV~~yv~~~~avlVElncET  152 (323)
                      ++++||+||++||+|||||||||+|+|||+|+|++|||+    +|+++|.||++|.++||+|++|++++.||||||||||
T Consensus         4 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNcET   83 (291)
T 1xb2_B            4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNCET   83 (291)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEESC
T ss_pred             CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEeccc
Confidence            467999999999999999999999999999999999999    9999999999999999999999999999999999999


Q ss_pred             chhhhcHHHHHHHHHHHHHHHHhcCCCCCCCC--CCCC-CHHHHhcccccCCCCCCCCccc--HHHHHHHHHHhhccceE
Q 020628          153 DFVSRNEIFQYLALALAKQALVAENVSQPVSG--LFPV-GPEYLEGLKLNLDHPKIGGETT--VQNAITEVAAIMGENVK  227 (323)
Q Consensus       153 DFVArn~~F~~Lak~IA~~iaa~~~~~p~~~~--~~~v-~~e~l~~~~~lldq~~id~~~T--V~d~i~e~ia~~GEnI~  227 (323)
                      ||||||+.|++|+++||+++++..+..+...+  ..++ +.+.+...+       ++++.|  |+|.+.++++++||||.
T Consensus        84 DFVArN~~F~~l~~~ia~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~-------~~~~~t~tv~d~i~~~ia~iGEni~  156 (291)
T 1xb2_B           84 DFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELP-------AGPEREGSLKDQLALAIGKLGENMI  156 (291)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSB-------CCSSSCSBHHHHHHHHHHHHCSCEE
T ss_pred             ceeeCCHHHHHHHHHHHHHHHhcCCcccccccccccccCCHHHHhhcc-------cccCcchhHHHHHHHHHHHhhhhHH
Confidence            99999999999999999999988643211111  1111 566665432       223456  99999999999999999


Q ss_pred             EeEEEEeeecCCCeeEEEecCCCC------CCCCcEEEEEEEeecCCCCCCchhHHHHHHHHHHHhhcCCcccCcCCC
Q 020628          228 LRRGFLLSASSPGVVSTYLHTSPQ------SGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELV  299 (323)
Q Consensus       228 L~Rf~r~~~~~~~~v~~Y~H~~~~------~~~Grig~LV~l~~~~~~~~~~~~~~la~~IAmHIvA~~P~~ls~~~V  299 (323)
                      |+||.++..++++.|++|+|+++.      +++||||+||.|++.++   .+.+.+++++||||||||+|.||++++|
T Consensus       157 lrR~~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~---~~~l~~~ak~iAmHIaA~~P~~l~~~~v  231 (291)
T 1xb2_B          157 LKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL---KANLADLGRRLGQHVVGMAPLSVGSLDD  231 (291)
T ss_dssp             EEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC---GGGCHHHHHHHHHHHHHHCCSBCCCTTS
T ss_pred             HHHHHHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCc---cchHHHHHHHHHHHHHhcCCcccCHHHh
Confidence            999999986667899999998843      57899999999997542   1224589999999999999999999987
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Back     alignment and structure
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Back     alignment and structure
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Back     alignment and structure
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Back     alignment and structure
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3 Back     alignment and structure
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A Back     alignment and structure
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Back     alignment and structure
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} Back     alignment and structure
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B Back     alignment and structure
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 323
d1xb2b2111 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), 9e-23
d1aipc152 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-t 6e-17
d1efub485 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), 2e-16
d1xb2b156 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N 7e-16
d1efub354 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-t 2e-15
d1efub2143 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), 6e-07
d1xb2b3109 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), 2e-06
d1tfea_142 d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimeri 1e-05
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 111 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 88.9 bits (220), Expect = 9e-23
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 127 RTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLF 186
           R   EGL+ L Q      ++E+NCETDFVSRN  FQ L   +A   L   +       L 
Sbjct: 2   RKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTL--LHCQNLKDQLS 59

Query: 187 PVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASS 238
                +L   +L+        E ++++ +      +GEN+ L+R   +   +
Sbjct: 60  TYSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPA 111
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 52 Back     information, alignment and structure
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 85 Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 56 Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 54 Back     information, alignment and structure
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 143 Back     information, alignment and structure
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 109 Back     information, alignment and structure
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Length = 142 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
d1xb2b2111 Elongation factor Ts (EF-Ts), dimerisation domain 99.93
d1tfea_142 Elongation factor Ts (EF-Ts), dimerisation domain 99.9
d1efub485 Elongation factor Ts (EF-Ts), dimerisation domain 99.88
d1aipc152 Elongation factor Ts (EF-Ts), N-terminal domain {T 99.88
d1xb2b156 Elongation factor Ts (EF-Ts), N-terminal domain {C 99.87
d1efub354 Elongation factor Ts (EF-Ts), N-terminal domain {E 99.85
d1efub2143 Elongation factor Ts (EF-Ts), dimerisation domain 99.73
d1tfea_142 Elongation factor Ts (EF-Ts), dimerisation domain 99.72
d1efub2143 Elongation factor Ts (EF-Ts), dimerisation domain 99.61
d1xb2b3109 Elongation factor Ts (EF-Ts), dimerisation domain 99.55
d1xb2b3109 Elongation factor Ts (EF-Ts), dimerisation domain 99.34
d1xb2b2111 Elongation factor Ts (EF-Ts), dimerisation domain 96.73
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 96.14
d1efub485 Elongation factor Ts (EF-Ts), dimerisation domain 96.12
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 96.11
d2cpwa151 Cbl-interacting protein p70, STS1 {Human (Homo sap 95.95
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 95.77
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 95.74
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 95.73
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 95.11
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 95.0
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 94.94
d1oaia_59 FG-binding, C-terminal domain of TAP {Human (Homo 94.75
d1wj7a191 Ubiquitin-associated protein 2-like Ubap2l {Mouse 94.68
d1veja161 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 94.4
d1vdla_80 Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M 94.39
d1whca_64 UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta 94.3
d2g3qa143 Endocytic protein Ede1, YBL047C {Saccharomyces cer 94.21
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 94.09
d2crna151 Suppressor of T-cell receptor signaling 2 (STS-2) 94.03
d1veka_84 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 92.4
d2zjq5171 Ribosomal protein L7/12, C-terminal domain {Deinoc 85.29
d1ctfa_68 Ribosomal protein L7/12, C-terminal domain {Escher 83.93
d1dd3a271 Ribosomal protein L7/12, C-terminal domain {Thermo 81.93
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.93  E-value=1.4e-26  Score=188.57  Aligned_cols=106  Identities=28%  Similarity=0.373  Sum_probs=85.0

Q ss_pred             cccccCCceEEEecCCeEEEEEEecCCchhhhcHHHHHHHHHHHHHHHHhcCCCCCCCCC---CCCCHHHHhcccccCCC
Q 020628          126 SRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGL---FPVGPEYLEGLKLNLDH  202 (323)
Q Consensus       126 ~R~a~EGlV~~yv~~~~avlVElncETDFVArn~~F~~Lak~IA~~iaa~~~~~p~~~~~---~~v~~e~l~~~~~lldq  202 (323)
                      ||.++||+|+++.+++.||||||||||||||||+.|++|+++||+++++..+........   ..++.+.+.+      +
T Consensus         1 GR~a~EG~I~i~~~~~~~~ivElNcETDFVArn~~F~~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~   74 (111)
T d1xb2b2           1 GRKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSE------L   74 (111)
T ss_dssp             TSCCCEEEEEEEEETTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHT------S
T ss_pred             CccccccEEEEEeCCCeEEEEEEecccchhhccHHHHHHHHHHHHHHHHcCcchHHHHhhhhhhhhcccchhh------h
Confidence            689999999999999999999999999999999999999999999999876432211110   1112333332      3


Q ss_pred             CCC-CCcccHHHHHHHHHHhhccceEEeEEEEeeec
Q 020628          203 PKI-GGETTVQNAITEVAAIMGENVKLRRGFLLSAS  237 (323)
Q Consensus       203 ~~i-d~~~TV~d~i~e~ia~~GEnI~L~Rf~r~~~~  237 (323)
                      +.. +++.||+|.+.++++++||||.|+||.+|++|
T Consensus        75 ~~~~~~~~tv~d~i~~~ia~iGEnI~lrR~~~~~~p  110 (111)
T d1xb2b2          75 PAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVP  110 (111)
T ss_dssp             BCCSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEECC
T ss_pred             hccccCCCcHHHHHHHHhhhhCCCEEEEEEEEEecC
Confidence            333 55789999999999999999999999999864
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure