Citrus Sinensis ID: 020636
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR9 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.947 | 0.833 | 0.931 | 1e-163 | |
| P05414 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.947 | 0.829 | 0.921 | 1e-162 | |
| O49506 | 368 | Peroxisomal (S)-2-hydroxy | no | no | 0.947 | 0.831 | 0.888 | 1e-161 | |
| Q9LRS0 | 367 | Peroxisomal (S)-2-hydroxy | yes | no | 0.947 | 0.833 | 0.905 | 1e-159 | |
| Q10CE4 | 369 | Peroxisomal (S)-2-hydroxy | yes | no | 0.953 | 0.834 | 0.883 | 1e-158 | |
| B8AKX6 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.953 | 0.834 | 0.883 | 1e-158 | |
| Q6YT73 | 369 | Peroxisomal (S)-2-hydroxy | no | no | 0.953 | 0.834 | 0.886 | 1e-158 | |
| B8B7C5 | 369 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.953 | 0.834 | 0.886 | 1e-158 | |
| Q7FAS1 | 367 | Peroxisomal (S)-2-hydroxy | no | no | 0.953 | 0.839 | 0.840 | 1e-149 | |
| B8AUI3 | 367 | Peroxisomal (S)-2-hydroxy | N/A | no | 0.953 | 0.839 | 0.840 | 1e-149 |
| >sp|Q9LRR9|GLO1_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/306 (93%), Positives = 300/306 (98%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 302 ASGIFI 307
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5 |
| >sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 571 bits (1471), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/306 (92%), Positives = 297/306 (97%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
A+G+F+
Sbjct: 302 AAGVFI 307
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 566 bits (1459), Expect = e-161, Method: Compositional matrix adjust.
Identities = 272/306 (88%), Positives = 292/306 (95%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGF ISMPIMIAPTAMQKMAHP+GE ATARA SAAGTIMTLSSW+T SVEEVASTGP
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGK+D+ NDSGLA+YVAGQ+D+SLSWKD+KWLQ+IT LPILVKGV+TAEDARIA
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
V+ GAAGIIVSNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASG+FV
Sbjct: 302 ASGVFV 307
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q9LRS0|GLO2_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO2 OS=Arabidopsis thaliana GN=GLO2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 561 bits (1445), Expect = e-159, Method: Compositional matrix adjust.
Identities = 277/306 (90%), Positives = 296/306 (96%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDV+KIDM
Sbjct: 2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTA QKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+R VV QLVRRAE+AGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKD++WLQTIT +PILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 302 ASGIFI 307
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 272/308 (88%), Positives = 297/308 (96%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAEDAR
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGA+G+F+
Sbjct: 301 LGAAGVFI 308
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 272/308 (88%), Positives = 297/308 (96%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAEDAR
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV +GAAGIIVSNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGA+G+F+
Sbjct: 301 LGAAGVFI 308
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 273/308 (88%), Positives = 297/308 (96%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGA+G+F+
Sbjct: 301 LGAAGVFI 308
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 273/308 (88%), Positives = 297/308 (96%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV+ GAAGIIVSNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGA+G+F+
Sbjct: 301 LGAAGVFI 308
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/308 (84%), Positives = 281/308 (91%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIMTLSSWSTSSVEEV S
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGASG+F+
Sbjct: 301 LGASGVFI 308
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
| >sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/308 (84%), Positives = 281/308 (91%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+
Sbjct: 1 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M T VLGF ISMPIMIAP+AMQKMAHPEGE ATARAASAAGTIMTLSSWSTSSVEEV S
Sbjct: 61 MATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED R
Sbjct: 181 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AV++GAAGIIVSNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGASG+F+
Sbjct: 301 LGASGVFI 308
|
Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation. Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| 147789493 | 371 | hypothetical protein VITISV_005886 [Viti | 0.947 | 0.824 | 0.928 | 1e-166 | |
| 323650489 | 370 | glycolate oxidase [Mangifera indica] | 0.953 | 0.832 | 0.951 | 1e-165 | |
| 189418957 | 369 | glycolate oxidase [Mikania micrantha] | 0.944 | 0.826 | 0.914 | 1e-165 | |
| 297790174 | 369 | hypothetical protein ARALYDRAFT_333142 [ | 0.947 | 0.829 | 0.950 | 1e-165 | |
| 304368145 | 371 | glycolate oxidase [Nicotiana benthamiana | 0.953 | 0.830 | 0.941 | 1e-164 | |
| 224117076 | 369 | predicted protein [Populus trichocarpa] | 0.947 | 0.829 | 0.937 | 1e-163 | |
| 224121620 | 369 | predicted protein [Populus trichocarpa] | 0.947 | 0.829 | 0.941 | 1e-163 | |
| 225443896 | 372 | PREDICTED: peroxisomal (S)-2-hydroxy-aci | 0.947 | 0.822 | 0.950 | 1e-163 | |
| 359806771 | 371 | peroxisomal (S)-2-hydroxy-acid oxidase G | 0.947 | 0.824 | 0.941 | 1e-162 | |
| 366984550 | 367 | glycolate oxidase [Gossypium hirsutum] | 0.947 | 0.833 | 0.934 | 1e-162 |
| >gi|147789493|emb|CAN67413.1| hypothetical protein VITISV_005886 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust.
Identities = 284/306 (92%), Positives = 299/306 (97%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTL +NR+AFS+ILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASA GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASATGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGVLTAED R+A
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRLA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 302 ASGIFI 307
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|323650489|gb|ADX97325.1| glycolate oxidase [Mangifera indica] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 293/308 (95%), Positives = 305/308 (99%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MEEITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLRENRFAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
L+NF+GLDLGKMD+ANDSGLA+YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR
Sbjct: 181 LRNFEGLDLGKMDQANDSGLASYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+A+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA+QGR+PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKASQGRVPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGASGIF+
Sbjct: 301 LGASGIFI 308
|
Source: Mangifera indica Species: Mangifera indica Genus: Mangifera Family: Anacardiaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|189418957|gb|ACD93720.1| glycolate oxidase [Mikania micrantha] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 279/305 (91%), Positives = 298/305 (97%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+TNV EYEAIAKEKLPKMV+DYYASGAEDQWTL+E+RNAFSRILFRPRILIDVSKI M T
Sbjct: 3 VTNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLEESRNAFSRILFRPRILIDVSKIVMTT 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
T+LGFKISMPIM+APTAMQKMAHPEGEYATARAAS+AGTIMTLSSW+TSSVEE ASTGPG
Sbjct: 63 TILGFKISMPIMVAPTAMQKMAHPEGEYATARAASSAGTIMTLSSWATSSVEEAASTGPG 122
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN
Sbjct: 123 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 182
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAV 243
F+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITK+PILVKGV+TAED R+A+
Sbjct: 183 FEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKMPILVKGVITAEDTRLAI 242
Query: 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303
QAGAAGIIVSNHGARQLDYVPATI ALEEVVKA QGR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 243 QAGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGA 302
Query: 304 SGIFV 308
+GIF+
Sbjct: 303 AGIFI 307
|
Source: Mikania micrantha Species: Mikania micrantha Genus: Mikania Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790174|ref|XP_002862992.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297839705|ref|XP_002887734.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] gi|297308786|gb|EFH39251.1| hypothetical protein ARALYDRAFT_333142 [Arabidopsis lyrata subsp. lyrata] gi|297333575|gb|EFH63993.1| hypothetical protein ARALYDRAFT_895734 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust.
Identities = 291/306 (95%), Positives = 303/306 (99%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVNEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP+LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPYLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLTAEDAR+A
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTAEDARMA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQAGAAGIIVSNHGARQLDYVPATI+ALEEVVKA QG+IPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPATIIALEEVVKAAQGKIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 302 ASGIFI 307
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304368145|gb|ADM26718.1| glycolate oxidase [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 290/308 (94%), Positives = 303/308 (98%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M E+TNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKID
Sbjct: 1 MEEVTNVMEYEAIAKKKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDV+WLQTIT LPILVKGVLTAEDAR
Sbjct: 181 LKNFEGLDLGKMDQASDSGLASYVAGQIDRTLSWKDVQWLQTITSLPILVKGVLTAEDAR 240
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
+AVQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGASGIF+
Sbjct: 301 LGASGIFI 308
|
Source: Nicotiana benthamiana Species: Nicotiana benthamiana Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117076|ref|XP_002317470.1| predicted protein [Populus trichocarpa] gi|118489504|gb|ABK96554.1| unknown [Populus trichocarpa x Populus deltoides] gi|222860535|gb|EEE98082.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 287/306 (93%), Positives = 303/306 (99%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYEAIAK+KLPKMVFDYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRF+LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFSLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDV+WLQTIT+LPILVKGVLTAEDAR++
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVEWLQTITRLPILVKGVLTAEDARLS 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 302 ASGIFI 307
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121620|ref|XP_002330746.1| predicted protein [Populus trichocarpa] gi|118486606|gb|ABK95141.1| unknown [Populus trichocarpa] gi|222872522|gb|EEF09653.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust.
Identities = 288/306 (94%), Positives = 301/306 (98%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMA 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMD+A DSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLTAEDAR++
Sbjct: 182 NFEGLDLGKMDKAADSGLASYVAGQIDRTLSWKDVEWLQTITKLPILVKGVLTAEDARLS 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQAGAAGIIVSNHGARQLDYVP+TIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 302 ASGIFI 307
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443896|ref|XP_002278104.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Vitis vinifera] gi|297740741|emb|CBI30923.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust.
Identities = 291/306 (95%), Positives = 299/306 (97%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK KLPKM FDYYASGAEDQWTL+ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 5 EITNVTEYEAIAKAKLPKMAFDYYASGAEDQWTLRENRNAFSRILFRPRILIDVSKIDMT 64
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTA QKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 65 TTVLGFKISMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 124
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 125 GIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 184
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMD+A+DSGLA+YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA
Sbjct: 185 NFEGLDLGKMDKADDSGLASYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 244
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
V GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 245 VNVGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 304
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 305 ASGIFI 310
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806771|ref|NP_001241302.1| peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [Glycine max] gi|167961875|dbj|BAG09382.1| peroxisomal glycolate oxidase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 288/306 (94%), Positives = 301/306 (98%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID+
Sbjct: 2 EITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDIT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMLAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTITKLPILVKGVLTAED RIA
Sbjct: 182 NFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQ+GAAGIIVSNHGARQLDYVPATI ALEEVVKA +GR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAEGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 302 ASGIFI 307
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|366984550|gb|AEX09184.1| glycolate oxidase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/306 (93%), Positives = 300/306 (98%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITN+ EYEAIAKEKLPKMV+DYYASGAEDQWTL+ENRNAFSRILFRPRILIDVSKIDM
Sbjct: 2 EITNITEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSRILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVE+VASTGP
Sbjct: 62 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEDVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GL+LGKMD+ +DSGLA+YVAGQIDRSLSWKDVKWLQTIT LPILVKGVL AEDAR+A
Sbjct: 182 NFEGLNLGKMDKTDDSGLASYVAGQIDRSLSWKDVKWLQTITSLPILVKGVLNAEDARLA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 302 ASGIFI 307
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| TAIR|locus:2091642 | 367 | GOX1 "glycolate oxidase 1" [Ar | 0.947 | 0.833 | 0.859 | 1.3e-137 | |
| UNIPROTKB|B8B7C5 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.953 | 0.834 | 0.824 | 2e-134 | |
| UNIPROTKB|Q6YT73 | 369 | GLO5 "Peroxisomal (S)-2-hydrox | 0.953 | 0.834 | 0.824 | 2e-134 | |
| UNIPROTKB|B8AKX6 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.953 | 0.834 | 0.818 | 8.8e-134 | |
| UNIPROTKB|Q10CE4 | 369 | GLO1 "Peroxisomal (S)-2-hydrox | 0.953 | 0.834 | 0.818 | 8.8e-134 | |
| TAIR|locus:2124499 | 368 | GOX3 "glycolate oxidase 3" [Ar | 0.947 | 0.831 | 0.823 | 4.4e-132 | |
| UNIPROTKB|B8AUI3 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.944 | 0.831 | 0.783 | 1.6e-125 | |
| UNIPROTKB|Q7FAS1 | 367 | GLO3 "Peroxisomal (S)-2-hydrox | 0.944 | 0.831 | 0.783 | 1.6e-125 | |
| UNIPROTKB|Q01KC2 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.953 | 0.836 | 0.662 | 1e-109 | |
| UNIPROTKB|Q7XPR4 | 368 | GLO2 "Peroxisomal (S)-2-hydrox | 0.953 | 0.836 | 0.662 | 1e-109 |
| TAIR|locus:2091642 GOX1 "glycolate oxidase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
Identities = 263/306 (85%), Positives = 277/306 (90%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEY GTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 242
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT ED
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 243 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
SNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 302 ASGIFI 307
|
|
| UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
Identities = 254/308 (82%), Positives = 276/308 (89%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGA+G+F+
Sbjct: 301 LGAAGVFI 308
|
|
| UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
Identities = 254/308 (82%), Positives = 276/308 (89%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNV EY+AIAK+KLPKM++DYYASGAED+WTLQENR AF+RILFRPRILIDVSKID
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M TTVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDR VV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLT
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LKNF+GL+LGKMD+A+DSGLA+YVAGQIDR+LSWKDVKWLQTIT LPILVKGV+TAED
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHGARQLDYVPATI ALEEVVKA +G++PVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGA+G+F+
Sbjct: 301 LGAAGVFI 308
|
|
| UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
Identities = 252/308 (81%), Positives = 275/308 (89%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAED
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGA+G+F+
Sbjct: 301 LGAAGVFI 308
|
|
| UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
Identities = 252/308 (81%), Positives = 275/308 (89%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
MGEITNVMEY+AIAK+KLPKM++DYYASGAED+WTL+ENR AFSRILFRPRILIDVSKID
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ TVLGFKISMPIMIAP+AMQKMAHP+GEY GTIMTLSSW+TSSVEEVAST
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPGIRFFQLYVYKDRNVV QLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPP+LT
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LKNF+GLDL +MD++NDSGLA+YVAGQIDR+LSWKDVKWLQ+IT LPILVKGV+TAED
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHGARQLDYVPATI ALEEVV A GRIPV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGA+G+F+
Sbjct: 301 LGAAGVFI 308
|
|
| TAIR|locus:2124499 GOX3 "glycolate oxidase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 252/306 (82%), Positives = 271/306 (88%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNVMEYE IAKEKLPKMV+DYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID++
Sbjct: 2 EITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVS 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP 122
TTVLGF ISMPIMIAPTAMQKMAHP+GE GTIMTLSSW+T SVEEVASTGP
Sbjct: 62 TTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVV QLV+RAE AGFKAIALTVDTPRLGRRE+DIKNRF LP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPRLGRRESDIKNRFALPRGLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXX 242
NF+GLDLGK+D+ NDSGLA+YVAGQ+D+SLSWKD+KWLQ+IT LPILVKGV+TAED
Sbjct: 182 NFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARIA 241
Query: 243 XXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
SNHGARQLDYVPATI+ALEEVVKA +GRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASG+FV
Sbjct: 302 ASGVFV 307
|
|
| UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 239/305 (78%), Positives = 258/305 (84%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+M T
Sbjct: 4 ITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMAT 63
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPG 123
VLGF ISMPIMIAP+AMQKMAHPEGE GTIMTLSSWSTSSVEEV S PG
Sbjct: 64 NVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAPG 123
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKN
Sbjct: 124 IRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKN 183
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXX 243
F+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED
Sbjct: 184 FEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTRLAV 243
Query: 244 XXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303
SNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 244 ESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALALGA 303
Query: 304 SGIFV 308
SG+F+
Sbjct: 304 SGVFI 308
|
|
| UNIPROTKB|Q7FAS1 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 239/305 (78%), Positives = 258/305 (84%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
ITNV EYE +AK+KLPKM++DYYASGAEDQWTL+ENR AFSRILFRPRILIDVS+I+M T
Sbjct: 4 ITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMAT 63
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPG 123
VLGF ISMPIMIAP+AMQKMAHPEGE GTIMTLSSWSTSSVEEV S PG
Sbjct: 64 NVLGFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAPG 123
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
IRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L LKN
Sbjct: 124 IRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKN 183
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXX 243
F+ LDLGKMD+ NDSGLA+YVA Q+DRSLSW DVKWLQTIT LPILVKGV+TAED
Sbjct: 184 FEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTRLAV 243
Query: 244 XXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303
SNHGARQLDYVPATI LEEVV+ +GR+PVFLDGGVRRGTDVFKALALGA
Sbjct: 244 ESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALALGA 303
Query: 304 SGIFV 308
SG+F+
Sbjct: 304 SGVFI 308
|
|
| UNIPROTKB|Q01KC2 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
Identities = 204/308 (66%), Positives = 242/308 (78%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M +TNV EYE +AK KLPKMV+D+YA AEDQWTL+EN AFSRILF+P +L+DVS ID
Sbjct: 1 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRILFQPVVLVDVSCID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ +VLG+ ISMPIMIAPTA+ K+AHPEGE TIMTLSSWS+ S+EEV
Sbjct: 61 MSMSVLGYNISMPIMIAPTALHKLAHPEGELATARAAAAAETIMTLSSWSSCSIEEVNLA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPG+RFFQL +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP +
Sbjct: 121 GPGVRFFQLSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVM 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LK F+GLD GK+DE N SGLAAYVA QIDRS SWKD+KWLQT+T LP+LVKG++TA+D
Sbjct: 181 LKIFEGLDQGKIDETNGSGLAAYVASQIDRSFSWKDIKWLQTVTSLPVLVKGIITAQDTR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHG RQLDY+PATI LEEVV+ GR+PVF+D G RRGTDVFKALA
Sbjct: 241 IAIEYGAAGIIMSNHGGRQLDYLPATISCLEEVVREANGRVPVFIDSGFRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGASG+F+
Sbjct: 301 LGASGVFI 308
|
|
| UNIPROTKB|Q7XPR4 GLO2 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
Identities = 204/308 (66%), Positives = 242/308 (78%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
M +TNV EYE +AK KLPKMV+D+YA AEDQWTL+EN AFSRILF+P +L+DVS ID
Sbjct: 1 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRILFQPVVLVDVSCID 60
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAST 120
M+ +VLG+ ISMPIMIAPTA+ K+AHPEGE TIMTLSSWS+ S+EEV
Sbjct: 61 MSMSVLGYNISMPIMIAPTALHKLAHPEGELATARAAAAAETIMTLSSWSSCSIEEVNLA 120
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
GPG+RFFQL +YKDRN+V QL++RAE+AG+KAI LTVD P LGRREAD+KNRFTLP +
Sbjct: 121 GPGVRFFQLSIYKDRNLVQQLIQRAEKAGYKAIVLTVDAPWLGRREADVKNRFTLPQNVM 180
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXX 240
LK F+GLD GK+DE N SGLAAYVA QIDRS SWKD+KWLQT+T LP+LVKG++TA+D
Sbjct: 181 LKIFEGLDQGKIDETNGSGLAAYVASQIDRSFSWKDIKWLQTVTSLPVLVKGIITAQDTR 240
Query: 241 XXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
SNHG RQLDY+PATI LEEVV+ GR+PVF+D G RRGTDVFKALA
Sbjct: 241 IAIEYGAAGIIMSNHGGRQLDYLPATISCLEEVVREANGRVPVFIDSGFRRGTDVFKALA 300
Query: 301 LGASGIFV 308
LGASG+F+
Sbjct: 301 LGASGVFI 308
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B8B8K5 | GLO4_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.5960 | 0.9287 | 0.8196 | N/A | no |
| Q54E41 | HAOX_DICDI | 1, ., 1, ., 3, ., 1, 5 | 0.5466 | 0.9349 | 0.7783 | yes | no |
| Q9LRR9 | GLO1_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.9313 | 0.9473 | 0.8337 | yes | no |
| Q01KC2 | GLO2_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.7175 | 0.9535 | 0.8369 | N/A | no |
| B8AUI3 | GLO3_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8409 | 0.9535 | 0.8392 | N/A | no |
| B8B7C5 | GLO5_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8863 | 0.9535 | 0.8346 | N/A | no |
| Q6YT73 | GLO5_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8863 | 0.9535 | 0.8346 | no | no |
| Q7XPR4 | GLO2_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.7175 | 0.9535 | 0.8369 | no | no |
| Q4ZY06 | LLDD_PSEU2 | 1, ., 1, ., 2, ., 3 | 0.3558 | 0.9442 | 0.8026 | yes | no |
| O49506 | GLO5_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.8888 | 0.9473 | 0.8315 | no | no |
| Q10CE4 | GLO1_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8831 | 0.9535 | 0.8346 | yes | no |
| Q9LRS0 | GLO2_ARATH | 1, ., 1, ., 3, ., 1, 5 | 0.9052 | 0.9473 | 0.8337 | yes | no |
| B8AKX6 | GLO1_ORYSI | 1, ., 1, ., 3, ., 1, 5 | 0.8831 | 0.9535 | 0.8346 | N/A | no |
| Q9UJM8 | HAOX1_HUMAN | 1, ., 1, ., 3, ., 1, 5 | 0.5784 | 0.9349 | 0.8162 | yes | no |
| Q7FAS1 | GLO3_ORYSJ | 1, ., 1, ., 3, ., 1, 5 | 0.8409 | 0.9535 | 0.8392 | no | no |
| P05414 | GOX_SPIOL | 1, ., 1, ., 3, ., 1, 5 | 0.9215 | 0.9473 | 0.8292 | N/A | no |
| Q3ZBW2 | HAOX2_BOVIN | 1, ., 1, ., 3, ., 1, 5 | 0.4617 | 0.9071 | 0.8300 | yes | no |
| Q9WU19 | HAOX1_MOUSE | 1, ., 1, ., 3, ., 1, 5 | 0.5631 | 0.9442 | 0.8243 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.3 | 0.983 |
| 3rd Layer | 1.1.3.15 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 323 | |||
| PLN02493 | 367 | PLN02493, PLN02493, probable peroxisomal (S)-2-hyd | 0.0 | |
| PLN02979 | 366 | PLN02979, PLN02979, glycolate oxidase | 1e-179 | |
| PLN02535 | 364 | PLN02535, PLN02535, glycolate oxidase | 1e-162 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom | 1e-144 | |
| pfam01070 | 302 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 1e-142 | |
| cd02922 | 344 | cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b | 1e-122 | |
| COG1304 | 360 | COG1304, idi, Isopentenyl diphosphate isomerase (B | 1e-104 | |
| cd04737 | 351 | cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN | 1e-100 | |
| cd03332 | 383 | cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) | 5e-97 | |
| cd04736 | 361 | cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li | 6e-87 | |
| TIGR02708 | 367 | TIGR02708, L_lactate_ox, L-lactate oxidase | 2e-73 | |
| PRK11197 | 381 | PRK11197, lldD, L-lactate dehydrogenase; Provision | 6e-71 | |
| TIGR03966 | 385 | TIGR03966, actino_HemFlav, heme/flavin dehydrogena | 4e-68 | |
| TIGR02151 | 333 | TIGR02151, IPP_isom_2, isopentenyl-diphosphate del | 9e-11 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 2e-09 | |
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 5e-07 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 9e-07 | |
| cd02811 | 326 | cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth | 6e-06 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 1e-05 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 2e-05 | |
| cd02808 | 392 | cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b | 4e-05 | |
| PRK05567 | 486 | PRK05567, PRK05567, inosine 5'-monophosphate dehyd | 9e-05 | |
| PLN02826 | 409 | PLN02826, PLN02826, dihydroorotate dehydrogenase | 1e-04 | |
| COG0167 | 310 | COG0167, PyrD, Dihydroorotate dehydrogenase [Nucle | 2e-04 | |
| COG0069 | 485 | COG0069, GltB, Glutamate synthase domain 2 [Amino | 3e-04 | |
| COG2070 | 336 | COG2070, COG2070, Dioxygenases related to 2-nitrop | 3e-04 | |
| PTZ00314 | 495 | PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd | 4e-04 | |
| PRK08649 | 368 | PRK08649, PRK08649, inosine 5-monophosphate dehydr | 7e-04 | |
| pfam00478 | 467 | pfam00478, IMPDH, IMP dehydrogenase / GMP reductas | 9e-04 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 0.001 | |
| pfam01645 | 367 | pfam01645, Glu_synthase, Conserved region in gluta | 0.002 | |
| pfam03060 | 329 | pfam03060, NMO, Nitronate monooxygenase | 0.002 | |
| TIGR01304 | 369 | TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family | 0.002 | |
| cd02810 | 289 | cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogena | 0.004 |
| >gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Score = 558 bits (1438), Expect = 0.0
Identities = 285/306 (93%), Positives = 300/306 (98%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM
Sbjct: 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+DIKNRFTLPP LTLK
Sbjct: 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLPILVKGVLT EDARIA
Sbjct: 182 NFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
ASGIF+
Sbjct: 302 ASGIFI 307
|
Length = 367 |
| >gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase | Back alignment and domain information |
|---|
Score = 500 bits (1289), Expect = e-179
Identities = 245/261 (93%), Positives = 256/261 (98%)
Query: 48 FRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS 107
FRPRILIDVSKIDM TTVLGFKISMPIM+APTAMQKMAHP+GEYATARAASAAGTIMTLS
Sbjct: 46 FRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLS 105
Query: 108 SWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167
SW+TSSVEEVASTGPGIRFFQLYVYK+RNVV QLVRRAERAGFKAIALTVDTPRLGRRE+
Sbjct: 106 SWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRES 165
Query: 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLP 227
DIKNRFTLPP LTLKNF+GLDLGKMDEANDSGLA+YVAGQIDR+LSWKDV+WLQTITKLP
Sbjct: 166 DIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLP 225
Query: 228 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287
ILVKGVLT EDARIA+QAGAAGIIVSNHGARQLDYVPATI ALEEVVKATQGRIPVFLDG
Sbjct: 226 ILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 285
Query: 288 GVRRGTDVFKALALGASGIFV 308
GVRRGTDVFKALALGASGIF+
Sbjct: 286 GVRRGTDVFKALALGASGIFI 306
|
Length = 366 |
| >gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase | Back alignment and domain information |
|---|
Score = 457 bits (1177), Expect = e-162
Identities = 200/308 (64%), Positives = 239/308 (77%), Gaps = 3/308 (0%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
EI NV E++ +AK+ LPKM +D+YA GAEDQ TL+EN AF RI FRPR+L+DVSKID
Sbjct: 2 ADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKID 61
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
M+TT+LG+ IS PIMIAPTAM K+AHPEGE ATARAA+A TIM LS ++ +VEEVAS+
Sbjct: 62 MSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASS 121
Query: 121 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180
+RF QLYVYK R++ AQLV+RAE+ G+KAI LT D PRLGRREADIKN+ P
Sbjct: 122 CNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISP---Q 178
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
LKNF+GL ++ SGL A+ + D SLSWKD++WL++IT LPIL+KGVLT EDA
Sbjct: 179 LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAI 238
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
AV+ G AGIIVSNHGARQLDY PATI LEEVV+A GR+PV LDGGVRRGTDVFKALA
Sbjct: 239 KAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA 298
Query: 301 LGASGIFV 308
LGA + V
Sbjct: 299 LGAQAVLV 306
|
Length = 364 |
| >gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Score = 408 bits (1052), Expect = e-144
Identities = 154/300 (51%), Positives = 192/300 (64%), Gaps = 46/300 (15%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+ A+A+ +LPK VFDY GA D+ TL+ NR AF RI RPR+L DVSK D +TT+LG
Sbjct: 2 DLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQ 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ 128
K++MP IAPT +Q +AHP+GE ATARAA+AAG TLS+ ST+S+EEVA+ PG R+FQ
Sbjct: 62 KLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQ 121
Query: 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188
LYV +DR + L+RRAE AG+KA+ LTVDTP LGRR
Sbjct: 122 LYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR----------------------- 158
Query: 189 LGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAA 248
L+W D+ WL++ K P+++KG+LT EDA AV AGA
Sbjct: 159 -----------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGAD 195
Query: 249 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308
GI+VSNHG RQLD PATI AL E+V A GRI V LDGG+RRGTDV KALALGA + +
Sbjct: 196 GIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299 |
| >gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Score = 402 bits (1035), Expect = e-142
Identities = 145/295 (49%), Positives = 186/295 (63%), Gaps = 42/295 (14%)
Query: 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMP 73
A+ +LPK FDY GA D+ TL+ NR AF RI RPR+L DVS D++TT+LG ++S+P
Sbjct: 1 ARRRLPKFAFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSDRDLSTTLLGQRLSLP 60
Query: 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133
IAPT MQ +AHP+GE A ARAA+AAG LS+ S++S+EEVA+ G +FQLYV K
Sbjct: 61 FGIAPTGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAAGGPLWFQLYVPK 120
Query: 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193
DR + L+ RAE AG+KA+ LTVDTP LG RE D++
Sbjct: 121 DRELTEDLLERAEAAGYKALVLTVDTPVLGNRERDLR----------------------- 157
Query: 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253
+W D+ WL+ K P++VKG+L+ EDA+ AV+AG GI+VS
Sbjct: 158 -------------------TWDDLAWLRDQWKGPLVVKGILSPEDAKRAVEAGVDGIVVS 198
Query: 254 NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308
NHG RQLD PATI AL E+V A GRIPV +DGG+RRGTDV KALALGA + +
Sbjct: 199 NHGGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLL 253
|
Length = 302 |
| >gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 353 bits (909), Expect = e-122
Identities = 143/303 (47%), Positives = 194/303 (64%), Gaps = 12/303 (3%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
++EA AK+ L K + YY+SGA+D+ TL+EN AF RI FRPR+L DV K+D +TT+LG
Sbjct: 2 DFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGH 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV--ASTGPGIRF 126
K+S+P I+P A+ K+AHP+GE ARAA G + +S+ ++ S+EE+ A F
Sbjct: 62 KVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLF 121
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186
FQLYV KDR +L++RAE+ G KAI LTVD P LG+RE D + +
Sbjct: 122 FQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAV-------SD 174
Query: 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG 246
GK +A G ++G ID +L+W D+KWL+ TKLPI++KGV T EDA +A + G
Sbjct: 175 GPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYG 234
Query: 247 AAGIIVSNHGARQLDYVPATIMALEEVVK-ATQ--GRIPVFLDGGVRRGTDVFKALALGA 303
GI++SNHG RQLD PA I L E+ K + +I V++DGGVRRGTDV KAL LGA
Sbjct: 235 VDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGA 294
Query: 304 SGI 306
+
Sbjct: 295 KAV 297
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344 |
| >gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 307 bits (789), Expect = e-104
Identities = 131/309 (42%), Positives = 170/309 (55%), Gaps = 13/309 (4%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V + A+ +LPK F Y GAED+ TL+ NR AF I RPR+L +V ID++TT L
Sbjct: 1 VADLRRAAQRRLPK-AFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFL 59
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF 126
G K+S PI+IAP +AHPEGE A+ A+AAG LS+ + +EEVA+ P
Sbjct: 60 GQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP---- 115
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186
FQLY KDR LV RA AG K + LTVD+P G RE D N + P N
Sbjct: 116 FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNV-- 173
Query: 187 LDLGKMDEANDSG------LAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240
L E + G +A YV+ +S +D + P+++KG+L EDA
Sbjct: 174 LQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAA 233
Query: 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300
A GA GI VSNHG RQLD+ +T +L E+V+A RI V DGG+R G DV KALA
Sbjct: 234 GAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALA 293
Query: 301 LGASGIFVS 309
LGA + +
Sbjct: 294 LGADAVGIG 302
|
Length = 360 |
| >gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = e-100
Identities = 128/302 (42%), Positives = 181/302 (59%), Gaps = 7/302 (2%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+I N+ + EA AK+ +PK F Y A G+ED+WTL+EN AF+ PR+L V D +
Sbjct: 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTS 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T +LG K+ PI++AP A +AH GE ATAR + G++ ++S++S +S+EE+A
Sbjct: 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASN 123
Query: 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181
G ++FQLY+ KD L+ RA+ AG KAI LT D G READI+N+F P +
Sbjct: 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFP--FGM 181
Query: 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241
N G S + + LS D++++ I+ LP++VKG+ + EDA +
Sbjct: 182 PNLNHFSEGTGKGKGIS----EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237
Query: 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301
A+ AGA GI VSNHG RQLD PA+ +L E+ +A R+P+ D GVRRG VFKALA
Sbjct: 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALAS 297
Query: 302 GA 303
GA
Sbjct: 298 GA 299
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351 |
| >gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 5e-97
Identities = 127/320 (39%), Positives = 193/320 (60%), Gaps = 18/320 (5%)
Query: 5 TNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTT 64
+ EA+A+E L F Y A GA + T + NR+AFSR PR+L V++ D++
Sbjct: 19 VDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVE 78
Query: 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-STGPG 123
+ G ++ P+++AP +Q++ HP+ E ATARAA+ G LS+ S+SS+E+VA + G
Sbjct: 79 LFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDA 138
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT--- 180
R+FQLY KD ++ L+RRAE+AG++ + +T+DT LG R D+ + PFL
Sbjct: 139 PRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYL--PFLRGIG 196
Query: 181 LKNF-------QGLD--LGKMDEANDSGLAA---YVAGQIDRSLSWKDVKWLQTITKLPI 228
+ N+ + L +G+ EA AA +V+ SL+W+D+ +L+ T LPI
Sbjct: 197 IANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256
Query: 229 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288
++KG+L +DAR AV+AG G++VSNHG RQ+D A + AL E+V+A R+ V D G
Sbjct: 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSG 316
Query: 289 VRRGTDVFKALALGASGIFV 308
VR G D+ KALALGA + +
Sbjct: 317 VRTGADIMKALALGAKAVLI 336
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383 |
| >gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 6e-87
Identities = 133/317 (41%), Positives = 191/317 (60%), Gaps = 22/317 (6%)
Query: 9 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGF 68
+Y ++AK++LP+MVFDY GAED+ L+ NR+AF R F PR L+DVSK D++ ++ G
Sbjct: 2 DYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGK 61
Query: 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ 128
S P++IAPT + P G+ A ARAA+ AG LS+ S S+E+VA G +FQ
Sbjct: 62 VWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQ 121
Query: 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP------------ 176
LYV R + LV+RA AG+ + LT D G RE D++N F +P
Sbjct: 122 LYVVH-RELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGI 180
Query: 177 --PFLTLKNFQGLDLGK----MDEANDSGL-AAYVAGQIDRSLSWKDVKWLQTITKLPIL 229
P L+ + D+A D + AA ++ Q+D S +W+D++WL+ + +L
Sbjct: 181 LHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLL 240
Query: 230 VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289
VKG++TAEDA+ ++ GA G+I+SNHG RQLD A I AL E+V AT PV +D G+
Sbjct: 241 VKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATY--KPVLIDSGI 298
Query: 290 RRGTDVFKALALGASGI 306
RRG+D+ KALALGA+ +
Sbjct: 299 RRGSDIVKALALGANAV 315
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361 |
| >gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 2e-73
Identities = 118/307 (38%), Positives = 166/307 (54%), Gaps = 18/307 (5%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ N + E +A++ +PK F Y ASGA D +TL+EN AF+ L P +L DV
Sbjct: 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTE 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-ASTG 121
LG K+ P ++AP A K+A+ +GE ATAR S G+I T SS+ST+ + E+ +
Sbjct: 72 IEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALN 131
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP---PF 178
+FQ Y+ KD + ++ R + G KAI LT D G RE D++N F P P
Sbjct: 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPI 191
Query: 179 LT--LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236
+ L G + V + LS +D++ + + LP+ VKG
Sbjct: 192 VQEYLPTGAGKSMD------------NVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCP 239
Query: 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296
EDA A++AGA+GI V+NHG RQLD PA +L+EV +A R+P+ D GVRRG VF
Sbjct: 240 EDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVF 299
Query: 297 KALALGA 303
KALA GA
Sbjct: 300 KALASGA 306
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367 |
| >gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 6e-71
Identities = 117/324 (36%), Positives = 171/324 (52%), Gaps = 21/324 (6%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
I+ +Y A A+ +LP +F Y GA ++TL+ N + I R R+L D+S + + T
Sbjct: 3 ISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLET 62
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
T+ G K+SMP+ +AP + M GE ARAA A G TLS+ S +EEVA
Sbjct: 63 TLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKR 122
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+FQLYV +DR + + RA+ AG + TVD P G R D + + P +
Sbjct: 123 PMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRY 182
Query: 184 FQGL-------DLGKMDEAND-----------SGLAAYVA---GQIDRSLSWKDVKWLQT 222
Q + D+G +D +GL Y+ D S+SWKD++W++
Sbjct: 183 LQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRD 242
Query: 223 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282
P+++KG+L EDAR AV+ GA GI+VSNHG RQLD V ++ AL + A +G I
Sbjct: 243 FWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIT 302
Query: 283 VFLDGGVRRGTDVFKALALGASGI 306
+ D G+R G DV + +ALGA +
Sbjct: 303 ILADSGIRNGLDVVRMIALGADTV 326
|
Length = 381 |
| >gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 4e-68
Identities = 116/326 (35%), Positives = 174/326 (53%), Gaps = 27/326 (8%)
Query: 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVL 66
V E + A+++LP+ V+ +G E TL +N AF + FRP + K +++TTV+
Sbjct: 8 VAEAQRRARKRLPRSVYAALIAGTEKGVTLADNVAAFDELGFRPHVAGAPPKRELSTTVM 67
Query: 67 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF 126
G +IS P++I+PT +Q + HP+GE A ARAA+A GT M LSS+++ VEEV + P F
Sbjct: 68 GQEISFPVLISPTGVQAV-HPDGEVAVARAAAARGTAMGLSSFASKPVEEVVAANPKT-F 125
Query: 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVD----------TPRLGRREADIKNRFTLP 176
FQ+Y R+ + + RA AG K + LT+D +P + + D++
Sbjct: 126 FQIYWVGSRDDILARLERARAAGAKGLILTLDWSFASRRDWGSPEIPEK-IDLRTMLRFA 184
Query: 177 PFLTLK--------------NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222
P + ++ + +L E + AY +W+DV WL+
Sbjct: 185 PEVLVRPGWLLRYLRSGRIPDLTVPNLALRGETPPTFFGAYGEWMGTPPPTWEDVAWLRE 244
Query: 223 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282
P ++KG+ +DAR AV AGA I VSNHG LD PA I AL + +A ++
Sbjct: 245 QWGGPFMLKGITRPDDARRAVDAGATAISVSNHGGNNLDGTPAAIRALPAIAEAVGDQVE 304
Query: 283 VFLDGGVRRGTDVFKALALGASGIFV 308
V LDGG+RRG+DV KALALGA + +
Sbjct: 305 VLLDGGIRRGSDVVKALALGARAVMI 330
|
Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385 |
| >gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 9e-11
Identities = 74/316 (23%), Positives = 109/316 (34%), Gaps = 88/316 (27%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87
Q F I L I++ ID+ T LG ++ P I AM
Sbjct: 10 CLKQNVEYGGSTGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYI--NAMTG-GSE 66
Query: 88 EG---EYATARAASAAGTIMTLSS-----------WSTSSVEEVASTGP---GIRFFQLY 130
E ARAA G M + S + V E A GP I QL
Sbjct: 67 EAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREEAPNGPLIANIGAPQL- 125
Query: 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LGRREADIKNRFTLPPFLTLKNFQGLDL 189
V + + E A+A+ ++ + L + E D +NF+G L
Sbjct: 126 VEGGPEEAQEAIDMIEA---DALAIHLNVLQELVQPEGD-------------RNFKGW-L 168
Query: 190 GKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAG 246
K+ E + Q+ +P++VK V ++ E A++ AG
Sbjct: 169 EKIAE---------ICSQLS----------------VPVIVKEVGFGISKEVAKLLADAG 203
Query: 247 AAGIIVSNHG---------ARQLDYVPA---------TIMALEEVVKATQGRIPVFLDGG 288
+ I V+ G R A T +L EV ++ P+ GG
Sbjct: 204 VSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEV-RSDAPDAPIIASGG 262
Query: 289 VRRGTDVFKALALGAS 304
+R G DV KA+ALGA
Sbjct: 263 LRTGLDVAKAIALGAD 278
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 333 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 2e-09
Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 20/187 (10%)
Query: 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD----- 193
+L + A AG AI + + E D K T G+ L D
Sbjct: 15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET-DLPLGVQLAINDAAAAV 73
Query: 194 --------EANDSGLAAYVAGQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDARI-AV 243
A G+ + A + ++ L + + + ++VK T E A A
Sbjct: 74 DIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAE 133
Query: 244 QAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301
+AG + + N G D VP + L + + ++PV GG+ D +ALAL
Sbjct: 134 EAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEALAL 191
Query: 302 GASGIFV 308
GA G+ V
Sbjct: 192 GADGVIV 198
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 5e-07
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 233 VLTAEDARIAVQAGAAGIIVSN-----HGARQLDYVPATIMAL-EEVVKATQGRIPVFLD 286
V + E+AR A AGA ++ H AL EV A IPV
Sbjct: 109 VTSVEEARKAEAAGADALVAQGAEAGGHRGTFD----IGTFALVPEVRDAV--DIPVIAA 162
Query: 287 GGVRRGTDVFKALALGASGIFV 308
GG+ G + ALALGA G+ +
Sbjct: 163 GGIADGRGIAAALALGADGVQM 184
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 9e-07
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 28/113 (24%)
Query: 219 WLQTITKL------PILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQL 260
WL I ++ P++VK V ++ E A+ AG I V+ G R
Sbjct: 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRAR 233
Query: 261 DYVPA---------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304
D A T +L E ++ +P+ GG+R G D+ KALALGA
Sbjct: 234 DDRLASYFADWGIPTAQSLLEA-RSLLPDLPIIASGGIRNGLDIAKALALGAD 285
|
Length = 352 |
| >gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 6e-06
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 24/103 (23%)
Query: 225 KLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG---------ARQLDYVPA------- 265
+P++VK V ++ E A+ AG I V+ G R D
Sbjct: 178 SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFAD 237
Query: 266 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304
T +L EV ++ +P+ GG+R G D+ KALALGA
Sbjct: 238 WGIPTAASLLEV-RSALPDLPLIASGGIRNGLDIAKALALGAD 279
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. Length = 326 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 28/114 (24%)
Query: 206 GQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------I 251
ID +K + +T L I+ V TAE A+ + AGA G+ I
Sbjct: 251 YVIDS------IKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRI 304
Query: 252 VSNHGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
V+ G Q I A+ +V + IPV DGG+R D+ KALA GA
Sbjct: 305 VAGVGVPQ-------ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGAD 351
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 22/103 (21%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGIIV-----SNHGAR--------QLDY 262
+K++ + + ++ V+TAE AR + AGA G+ V S R Q
Sbjct: 126 IKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQ--- 182
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
AT A+ +V A + +PV DGG+R D+ KALA GA
Sbjct: 183 --AT--AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGAD 221
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 19/105 (18%)
Query: 217 VKWLQTIT-KLPILVK---GVLTAEDARIAVQAGAAGIIVSNH----GARQL---DYV-- 263
++ L+ T PI VK G + A AGA I + GA L D+V
Sbjct: 205 IEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGL 264
Query: 264 PATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKALALGA 303
P T + L +A R+ + GG+R G DV KALALGA
Sbjct: 265 P-TELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGA 308
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392 |
| >gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 9e-05
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
V+ + + I+ V TAE AR ++AGA + IV+ G Q
Sbjct: 260 VREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQ--- 316
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFVSIM 311
I A+ + +A + IPV DGG+R D+ KALA GAS + + M
Sbjct: 317 ----ITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSM 362
|
Length = 486 |
| >gnl|CDD|178421 PLN02826, PLN02826, dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 215 KDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIM 268
+D P+LVK L+ ED A +A+ G G+I+SN + D V
Sbjct: 252 RDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPH 311
Query: 269 A------------------LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304
A L E+ + T+G+IP+ GGV G D +K + GAS
Sbjct: 312 ADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGAS 365
|
Length = 409 |
| >gnl|CDD|223245 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 29/125 (23%)
Query: 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAED------ARIAVQAGAAGIIVSNHGARQL 260
D L K ++ ++ TK+P+ VK L A+ A +AGA G+I N +
Sbjct: 143 GQDPELLEKLLEAVKAATKVPVFVK--LAPNITDIDEIAKAAEEAGADGLIAINTTKSGM 200
Query: 261 DYVPATIM---------------------ALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 299
T + E+ K G IP+ GG+ G D + +
Sbjct: 201 KIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFI 260
Query: 300 ALGAS 304
GAS
Sbjct: 261 LAGAS 265
|
Length = 310 |
| >gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 23/107 (21%)
Query: 217 VKWLQTITKL-PILVK-----GVLTAEDARIAVQAGAAGIIVSNH----GARQL---DYV 263
+K L+ I VK GV T A +AGA I + GA L D+
Sbjct: 294 IKDLKEANPWAKISVKLVAEHGVGTI--AAGVAKAGADVITIDGADGGTGASPLTSIDHA 351
Query: 264 --PATIMALEEVVKATQG-----RIPVFLDGGVRRGTDVFKALALGA 303
P + L E + ++ + DGG+R G DV KA ALGA
Sbjct: 352 GIP-WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGA 397
|
Length = 485 |
| >gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 232 GVLTAEDARIAVQAGAAGIIVSNHGA---RQLDYVPATIMAL-EEVVKATQGRIPVFLDG 287
V+T +A A +AGA +I A R + + AL EVV A G IPV G
Sbjct: 133 SVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAAG 191
Query: 288 GVRRGTDVFKALALGASGI 306
G+ G + ALALGA G+
Sbjct: 192 GIADGRGIAAALALGADGV 210
|
Length = 336 |
| >gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 22/103 (21%)
Query: 217 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
+K L++ + I+ V+TA+ A+ + AGA G+ V G Q
Sbjct: 273 IKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQAS- 331
Query: 263 VPATIMALEEVVK-ATQGRIPVFLDGGVRRGTDVFKALALGAS 304
A+ V + A + +P DGG++ D+ KALALGA
Sbjct: 332 ------AVYHVARYARERGVPCIADGGIKNSGDICKALALGAD 368
|
Length = 495 |
| >gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 7e-04
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 227 PILVKGVLTAEDARIAVQAGAAGIIV--------SNHGARQLDYVP-AT-IM----ALEE 272
P++V G +T A ++ GAAG++V ++ G + VP AT I A +
Sbjct: 189 PVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIG-VPMATAIADVAAARRD 247
Query: 273 VVKATQGR-IPVFLDGGVRRGTDVFKALALGA 303
+ T GR + V DGG+ D+ KA+A GA
Sbjct: 248 YLDETGGRYVHVIADGGIGTSGDIAKAIACGA 279
|
Length = 368 |
| >gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 9e-04
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 22/103 (21%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
+KW+ + +L ++ V+TAE AR + AGA + V+ G QL
Sbjct: 255 IKWIKKKYPELDVIAGNVVTAEAARELIDAGADAVKVGIGPGSICTTREVAGVGRPQL-- 312
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
A+ EV A + +PV DGG+R D+ KALA GAS
Sbjct: 313 -----TAVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGAS 350
|
This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 30 AEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAM 81
A + + F + L +D+ ID++T LG K+S P +I AM
Sbjct: 17 ALKEDVEYKKTTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLI--NAM 68
|
Length = 352 |
| >gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
Query: 227 PILVKGVLTAEDARIAVQAGAAG-----IIVSNH----GARQL---DYV--PATIMALEE 272
PI VK L + + AG A I++ H GA + P +AL E
Sbjct: 204 PISVK--LVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKHAGLP-WELALAE 260
Query: 273 VVKAT-----QGRIPVFLDGGVRRGTDVFKALALGA 303
V + + R+ + DGG+R G DV KA ALGA
Sbjct: 261 VHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGA 296
|
This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster. Length = 367 |
| >gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 228 ILVKGVLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285
++ V +A++AR A AGA ++ G +V T L V IPV
Sbjct: 139 KVIPTVSSAKEARKAEAAGADAVVAQGPEAGGHIGTFVGVTTFLLVPTVVDAVD-IPVIA 197
Query: 286 DGGVRRGTDVFKALALGASGI 306
GG+ G + ALALGA G+
Sbjct: 198 AGGIADGRGIAAALALGAEGV 218
|
Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite. Length = 329 |
| >gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 226 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV-------PATIM----ALEEVV 274
+P++ GV A ++ GAAG+IV GA V I A + +
Sbjct: 189 VPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYL 248
Query: 275 KATQGR-IPVFLDGGVRRGTDVFKALALGASGI 306
T GR + V DGG+ D+ KA+A GA +
Sbjct: 249 DETGGRYVHVIADGGIETSGDLVKAIACGADAV 281
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302 [Unknown function, General]. Length = 369 |
| >gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 65/309 (21%), Positives = 99/309 (32%), Gaps = 109/309 (35%)
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM----TLSSWSTSSVEEVA 118
LG K+ P +A + K GE AA+ G ++ TL + + VA
Sbjct: 1 VNFLGLKLKNPFGVAAGPLLK----TGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVA 56
Query: 119 -----------------STG---PGIRFFQLYVYK-----DRNVV------------AQL 141
S G G+ + + K + +L
Sbjct: 57 RLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVEL 116
Query: 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201
R+ ERAG KA+ L + P +G G LG+ EA +A
Sbjct: 117 ARKIERAGAKALELNLSCPNVG---------------------GGRQLGQDPEA----VA 151
Query: 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVK--GVLTAED----ARIAVQAGAAGIIVSNH 255
+ K ++ +P+LVK ED A+ A +AGA G+ N
Sbjct: 152 NLL-------------KAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINT 198
Query: 256 -GARQLDYV-------------------PATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295
R +D P + + + Q IP+ GG+ G DV
Sbjct: 199 ISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDV 258
Query: 296 FKALALGAS 304
+ L GAS
Sbjct: 259 LEMLMAGAS 267
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 100.0 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 100.0 | |
| PLN02535 | 364 | glycolate oxidase | 100.0 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 100.0 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 100.0 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 100.0 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 100.0 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 100.0 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 100.0 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 100.0 | |
| PLN02979 | 366 | glycolate oxidase | 100.0 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 100.0 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 100.0 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.98 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.97 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.97 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.96 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.95 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.94 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.91 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.9 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.9 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.9 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.89 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.89 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.88 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.88 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.87 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.86 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.86 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.86 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.85 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.84 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.84 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.84 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.82 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.81 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.81 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.8 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.8 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.8 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.79 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.79 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.78 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.78 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.78 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.78 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.77 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.77 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.76 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.76 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.76 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.76 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.75 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.74 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.74 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.73 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 99.71 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.7 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.69 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.67 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 99.65 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 99.63 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.62 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.59 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.56 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.56 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.54 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 99.52 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.5 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 99.48 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.45 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 99.43 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.39 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.38 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 99.37 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.37 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 99.35 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.35 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 99.33 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 99.33 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.31 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 99.3 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 99.29 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 99.27 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.24 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 99.2 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 99.19 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 99.18 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 99.12 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.1 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 99.1 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 99.09 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 99.09 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 99.07 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 99.07 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 99.04 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.0 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.97 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.94 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.93 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.9 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.85 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 98.85 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.81 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.77 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.76 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 98.74 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.71 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.71 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.7 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.69 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.69 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.68 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.65 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.65 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 98.65 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.64 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.64 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 98.63 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.61 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 98.6 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.59 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.55 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.55 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 98.54 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.54 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.52 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.52 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.52 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 98.48 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.48 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 98.48 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.47 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.46 | |
| PLN02591 | 250 | tryptophan synthase | 98.45 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.44 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.42 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.42 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.41 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 98.41 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.4 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.4 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.39 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 98.39 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.37 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 98.36 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.36 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.36 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.34 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.33 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.32 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 98.32 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 98.31 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 98.3 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.3 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 98.3 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.29 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 98.28 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.28 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.26 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.25 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.24 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 98.23 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.22 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.22 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.21 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 98.2 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 98.19 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.17 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 98.17 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.1 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 98.09 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 98.07 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 98.05 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 98.04 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.04 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.04 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 98.04 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 98.02 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 98.01 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 98.0 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.0 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.99 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 97.97 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.95 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.95 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.95 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.94 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.93 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.93 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.93 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 97.92 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.91 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.9 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 97.88 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.87 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 97.85 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 97.85 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.81 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.8 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 97.78 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.78 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 97.78 | |
| PRK08005 | 210 | epimerase; Validated | 97.78 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.76 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 97.72 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.72 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.7 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.7 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.7 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.7 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 97.69 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.68 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.67 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.66 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.65 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.64 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.63 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.63 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.63 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.63 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 97.62 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 97.58 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.52 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.49 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.49 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.49 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 97.48 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 97.47 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 97.46 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 97.46 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.45 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 97.45 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 97.43 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.43 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 97.41 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 97.4 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 97.4 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.38 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 97.37 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.37 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 97.36 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 97.35 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 97.34 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.34 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 97.33 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.32 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 97.31 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.28 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 97.28 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.28 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 97.27 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 97.26 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 97.26 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 97.23 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 97.23 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.19 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.18 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 97.16 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.14 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 97.14 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 97.13 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 97.1 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.09 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 97.07 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 97.06 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 97.02 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.02 | |
| PRK06852 | 304 | aldolase; Validated | 96.97 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 96.95 | |
| PLN02591 | 250 | tryptophan synthase | 96.93 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 96.92 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 96.92 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 96.91 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.88 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 96.86 | |
| PRK12376 | 236 | putative translaldolase; Provisional | 96.85 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 96.84 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.84 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 96.81 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 96.78 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 96.76 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 96.73 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.72 | |
| TIGR02134 | 236 | transald_staph transaldolase. This small family of | 96.71 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 96.7 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 96.69 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 96.69 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 96.68 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 96.66 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.66 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 96.66 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 96.63 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 96.61 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 96.55 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 96.55 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 96.54 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.52 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.52 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.48 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.47 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 96.46 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 96.45 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 96.42 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 96.4 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 96.4 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 96.4 | |
| PRK14057 | 254 | epimerase; Provisional | 96.36 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 96.31 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 96.28 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 96.23 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 96.14 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 96.14 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.13 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 96.12 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 96.1 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.1 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 96.07 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 96.06 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 96.03 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 96.02 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 95.97 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.96 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 95.94 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 95.91 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 95.9 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.9 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 95.87 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 95.86 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 95.85 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 95.81 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.8 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 95.8 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 95.77 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 95.71 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 95.71 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.69 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 95.68 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 95.67 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 95.65 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.65 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 95.65 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 95.64 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.62 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 95.6 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 95.6 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 95.57 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.56 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.55 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 95.55 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 95.53 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 95.51 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.5 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.48 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 95.48 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 95.46 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 95.46 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 95.43 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 95.37 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 95.37 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 95.36 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 95.34 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 95.3 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.3 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 95.29 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 95.29 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 95.27 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 95.2 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 95.19 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 95.18 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 95.16 | |
| cd00516 | 281 | PRTase_typeII Phosphoribosyltransferase (PRTase) t | 95.11 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 95.1 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 95.06 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 95.01 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 95.01 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.0 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 95.0 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 94.99 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 94.99 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 94.97 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 94.95 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 94.89 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 94.89 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 94.89 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 94.87 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 94.86 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 94.84 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 94.83 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 94.82 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 94.79 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 94.79 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 94.78 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 94.75 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 94.72 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.64 | |
| PLN03033 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 94.53 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 94.52 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 94.43 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 94.43 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 94.4 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 94.34 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 94.3 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 94.29 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 94.28 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 94.27 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 94.27 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 94.23 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 94.18 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 94.15 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 94.04 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 94.02 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 94.01 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 94.0 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 93.98 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 93.95 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 93.94 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 93.9 | |
| PLN02979 | 366 | glycolate oxidase | 93.89 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 93.87 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 93.87 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 93.84 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 93.83 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 93.74 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 93.74 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 93.71 | |
| cd00439 | 252 | Transaldolase Transaldolase. Enzymes found in the | 93.71 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 93.71 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 93.65 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 93.57 | |
| PLN02535 | 364 | glycolate oxidase | 93.56 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 93.49 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 93.48 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 93.38 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 93.35 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 93.24 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 93.22 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 93.21 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 93.14 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 93.14 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 93.12 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 93.1 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 93.01 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 93.0 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 92.98 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 92.92 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 92.91 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 92.84 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 92.81 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 92.79 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 92.77 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.76 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 92.76 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 92.73 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 92.71 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 92.65 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 92.62 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 92.61 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 92.58 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 92.54 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 92.5 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 92.31 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 92.31 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 92.31 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 92.25 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 92.24 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 92.2 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 92.2 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 92.08 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 92.07 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 92.07 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 92.06 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 92.0 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 91.95 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 91.94 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 91.94 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 91.9 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 91.89 | |
| PTZ00411 | 333 | transaldolase-like protein; Provisional | 91.87 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 91.79 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 91.72 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 91.72 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 91.67 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 91.55 | |
| PRK12309 | 391 | transaldolase/EF-hand domain-containing protein; P | 91.33 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 91.32 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 91.22 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 91.18 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 91.16 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 91.12 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 91.07 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 90.94 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 90.91 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 90.75 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 90.74 | |
| PF04898 | 287 | Glu_syn_central: Glutamate synthase central domain | 90.72 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 90.71 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 90.66 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 90.64 |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-84 Score=579.27 Aligned_cols=312 Identities=75% Similarity=1.123 Sum_probs=298.2
Q ss_pred CCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccc
Q 020636 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (323)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~ 83 (323)
+.|++|||+.|+++||+.+||||.|||+|+.|+++|+++|.||.|+||+|+|++.+|+||+++|++++.||++||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
|+||+||.+.|++|.++|++|++|+++++|+|||.+++| +.+|||||+++|++.+.++++|+|++||++|++|||+|+.
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999885 8899999999999999999999999999999999999999
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
|+|+.|++|+|.+|+.+++.++.+...........+++..+++.+.||+++|++|+|+++.+++||++||+++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999999888876654444444466788889999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++|+++|+||||||||+|..+.+++.|+++.+++.+++||+.|||||+|.|++|||+|||.+|.+||+++.-
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWG 313 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchhee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998653
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=575.31 Aligned_cols=313 Identities=91% Similarity=1.317 Sum_probs=287.8
Q ss_pred CCCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccc
Q 020636 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (323)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~ 81 (323)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||+|+
T Consensus 1 ~~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~ 80 (367)
T PLN02493 1 MEITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAM 80 (367)
T ss_pred CccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 020636 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~ 161 (323)
++|+||++|+++|++|+++|++|++|+++++++|||++..+++.|||||+.+|++.++++++||+++||++|++|||+|+
T Consensus 81 ~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~ 160 (367)
T PLN02493 81 QKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPR 160 (367)
T ss_pred HhhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 99999999999999999999999999999999999998766789999999999999999999999999999999999999
Q ss_pred CCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHH
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~ 241 (323)
.|+|++|+|++|.+|+++.++++.+...++.....+.+...+...+.++.++|++|+|+|+.|++||++|++.+.++|+.
T Consensus 161 ~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~ 240 (367)
T PLN02493 161 LGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARI 240 (367)
T ss_pred CCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHH
Confidence 99999999999999977766554322111111112233444555677899999999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.++|+|+|+||||||+++|+.++++++|+++.+.+.+++|||+|||||+|.|++|||++||++|+|||+++.
T Consensus 241 a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 241 AIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred HHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 9999999999999999999999999999999999887789999999999999999999999999999999974
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-75 Score=554.66 Aligned_cols=312 Identities=64% Similarity=0.971 Sum_probs=284.0
Q ss_pred CCCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccc
Q 020636 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (323)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~ 81 (323)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 020636 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~ 161 (323)
++++||++|+++|++|+++|+++++|+++++++|||++..+++.|||||+++|++.++++++||+++||++|++|||+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998767789999999999999999999999999999999999999
Q ss_pred CCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHH
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~ 241 (323)
.|+|++|+|++|.+|. .+++.+....+.....+.+...+.....++.++|++|+|+++.+++||++|++.++++|+.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998873 2222211000111112233444555667899999999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.++|+|+|+|+||||+++|.++++++.|+++.+.+..++|||++|||+++.|++|+|++||++|++||+|+...
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l 314 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGL 314 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhh
Confidence 999999999999999999999999999999999887667999999999999999999999999999999998753
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-75 Score=557.04 Aligned_cols=311 Identities=36% Similarity=0.600 Sum_probs=281.4
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||+|++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
+++||++|+++|++|+++|++|++|+++++++|||+++.+++.|||||+++|++.++++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999988777899999999999999999999999999999999999999
Q ss_pred CchHHHHhhccCCCCccccccccccc-----------------cCCCc----cc-cchhhHHHHhhccCCccCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLD-----------------LGKMD----EA-NDSGLAAYVAGQIDRSLSWKDVKWL 220 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~-----------------~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~i~~i 220 (323)
|+|++|+|++|.+|+. +++++.+.. .++.. .. .......+...+.+|.++|++|+||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999988842 333322110 00000 00 0112223455567899999999999
Q ss_pred HHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 020636 221 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 221 ~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~ 300 (323)
++.|++|+++|++.+.++|+.+.++|+|+|+||||||+++++.+++++.|+++.+.+..++|||++|||+++.|++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988766899999999999999999999
Q ss_pred cCCCEEEEcccccc
Q 020636 301 LGASGIFVSIMPCQ 314 (323)
Q Consensus 301 lGAd~V~iG~~~~~ 314 (323)
+||++|++||+|+.
T Consensus 321 LGA~~V~iGr~~l~ 334 (381)
T PRK11197 321 LGADTVLLGRAFVY 334 (381)
T ss_pred cCcCceeEhHHHHH
Confidence 99999999999975
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-75 Score=550.88 Aligned_cols=304 Identities=43% Similarity=0.670 Sum_probs=278.1
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCc
Q 020636 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (323)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~ 87 (323)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|++||+++++||++||+|+++|+||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHH
Q 020636 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (323)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~ 167 (323)
+||+++|++|+++|++|++|+++++|+|||+++.+++.|||||+. +++.++++++||+++||++|+||||+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988777899999995 6999999999999999999999999999999999
Q ss_pred HHhhccCCCCccccccccccccCC----------------Ccc--c-cchhhHHHHhhccCCccCHHHHHHHHHhcCCCE
Q 020636 168 DIKNRFTLPPFLTLKNFQGLDLGK----------------MDE--A-NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (323)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~----------------~~~--~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv 228 (323)
|+|++|.+|+++..+++.+....| ... . ...+...++..+.|+.++|++|+||++.++.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 999999999877766644321111 000 0 111233355556789999999999999999999
Q ss_pred EEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 229 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 229 ~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
++|++.+.++|+.+.++|+|+|+||||||+|+++.+++++.|+++.+.+ ++|||++|||+++.|++|||++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999887 69999999999999999999999999999
Q ss_pred cccccc
Q 020636 309 SIMPCQ 314 (323)
Q Consensus 309 G~~~~~ 314 (323)
||+++.
T Consensus 318 Gr~~l~ 323 (361)
T cd04736 318 GRATLY 323 (361)
T ss_pred CHHHHH
Confidence 999874
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=541.86 Aligned_cols=306 Identities=38% Similarity=0.550 Sum_probs=276.4
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|++||+++++||++||+|++
T Consensus 12 ~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~ 91 (367)
T TIGR02708 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAH 91 (367)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcC-CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 020636 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~ 161 (323)
++.||++|+++|++|+++|++|++|+++++++|||+++. +++.|||||+.+|++.+.++++||+++||++|++|||+|+
T Consensus 92 ~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~ 171 (367)
T TIGR02708 92 KLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATV 171 (367)
T ss_pred hccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999874 5789999999999999999999999999999999999999
Q ss_pred CCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHH
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~ 241 (323)
.|+|++|+|++|.+|......+ .....+ .+... ..+....++.++|++|+|+++.+++||++|++.+.++|+.
T Consensus 172 ~g~R~~d~r~~~~~p~~~~~~~--~~~~~~----~~~~~-~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~ 244 (367)
T TIGR02708 172 GGNREVDVRNGFVFPVGMPIVQ--EYLPTG----AGKSM-DNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADR 244 (367)
T ss_pred CCcchhhhhcCCCCCCccchhh--hhcccC----Cccch-hhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHH
Confidence 9999999999998875332111 000000 00000 0111234678999999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+.++|+|+|+||||||||+++.+++++.|+++++++++++|||+||||+++.|++|+|++||++|+|||+++..
T Consensus 245 a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~ 318 (367)
T TIGR02708 245 ALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYG 318 (367)
T ss_pred HHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 99999999999999999999999999999999998866899999999999999999999999999999998653
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-73 Score=544.01 Aligned_cols=310 Identities=39% Similarity=0.614 Sum_probs=277.0
Q ss_pred CCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccc
Q 020636 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (323)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~ 83 (323)
+.|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||++||+|+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcC-CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
++||++|+++|++|+++|+++++|+++++++|||++.. +++.|||||+.+|++.+.++++||+++||++|++|||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 99999999999999999999999999999999999874 37899999999999999999999999999999999999999
Q ss_pred CchHHHHhhccCCCCc--cccccccccc-------cCCCcc-c----cchhhHHHHhhccCCccCHHHHHHHHHhcCCCE
Q 020636 163 GRREADIKNRFTLPPF--LTLKNFQGLD-------LGKMDE-A----NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~--~~~~~~~~~~-------~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv 228 (323)
|+|++|+|++| .|.. ..+.++...+ ...... . ...+...+.....++.++|++|+|+++.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999999 3431 2221111000 000000 0 111223333444689999999999999999999
Q ss_pred EEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 229 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 229 ~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
++|++.+.+||+.+.++|+|+|+|||||||++|++++++++|+++++++.+++|||++|||+++.|++|||++||++|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999887689999999999999999999999999999
Q ss_pred cccccc
Q 020636 309 SIMPCQ 314 (323)
Q Consensus 309 G~~~~~ 314 (323)
||+|+.
T Consensus 337 Gr~~l~ 342 (383)
T cd03332 337 GRPYAY 342 (383)
T ss_pred cHHHHH
Confidence 999983
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-72 Score=534.35 Aligned_cols=307 Identities=42% Similarity=0.652 Sum_probs=278.5
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||||++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcC-CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 020636 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~ 161 (323)
++.||++|+++|++|+++|+++++|+.+++++|||.++. +++.|||||+++|++.+.++++|++++||++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999886 5789999999999999999999999999999999999999
Q ss_pred CCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHH
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~ 241 (323)
.|+|++|+|++|.+|.++.......... + .+.+.. ......++.++|++++|+++.+++||++|++.++++|+.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~-~----~~~~~~-~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGT-G----KGKGIS-EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcccc-c----cCcchh-hhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 9999999999998886544332211100 0 000000 112234678899999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+.++|+|+|+||||||+++|+++++++.|+++++++.+++|||++|||+++.|++|+|++||++|+|||+++..
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~ 311 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYG 311 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 99999999999999999999999999999999998866899999999999999999999999999999998764
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-70 Score=520.89 Aligned_cols=301 Identities=49% Similarity=0.738 Sum_probs=267.7
Q ss_pred HHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHH
Q 020636 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (323)
Q Consensus 14 A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~ 93 (323)
||++||+..|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhcc
Q 020636 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (323)
Q Consensus 94 a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~ 173 (323)
|++|+++|+++++|++++.++|++.+..+++.|||||.+.|++.+.++++|++++||++++||||+|+.++|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999999877889999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCCCc-------------cccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHH
Q 020636 174 TLPPFLTLKNFQGLDLGKMD-------------EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240 (323)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~ 240 (323)
.+|.+++.+++.+....|.. ........++...+.++.++|+.|+|+++.|++||++|++++.+||+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 99998887777654332210 11223344466667789999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 241 ~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.++|+|+|+|||||||++|+++++++.|+++++++++++|||+|||||+|.|++|+|+|||++|++||+|+.
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 99999999999999999999999999999999999987789999999999999999999999999999999875
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=512.96 Aligned_cols=303 Identities=47% Similarity=0.707 Sum_probs=275.0
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCc
Q 020636 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (323)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~ 87 (323)
+|||++||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|++||+++++||++|||++++++||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceeecCCCCCCHHHHHhc-CC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 020636 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (323)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~-~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r 165 (323)
++|.++|++|+++|++|++|++++.++|||.+. .| .+.|||||.++|++.++++++|++++||++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHc
Q 020636 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA 245 (323)
Q Consensus 166 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~ 245 (323)
++|+|++|..|.++...+.... ....+...+.....++..+|+.++|+++.+++||++|++.+.++|+.+.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999998866554332111 011122223444567889999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 246 Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
|+|+|+||||||+++|..+++++.|+++.+.+ ++++|||++|||+++.|++|+|++||++|+|||+|+..+.
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 99999999999999999899999999998753 3479999999999999999999999999999999987654
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=469.26 Aligned_cols=270 Identities=91% Similarity=1.295 Sum_probs=245.3
Q ss_pred ccccccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCc
Q 020636 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (323)
Q Consensus 45 ~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~ 124 (323)
-|.|+||+|+|++++||+|++||+++++||++||+|+++|.||++|+++|++|+++|++|++|++++.++|||++..+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999876778
Q ss_pred eeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHH
Q 020636 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 125 ~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
.|||||+++|++.++++++||+++||++|++|||+|+.|+|++|+||+|.+|++++++++.+...++.......+...+.
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999998776666433211111111223344455
Q ss_pred hhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 205 ~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.++|++|+|+|+.|++||++|++.+.+||+.+.++|+|+|+||||||+++|..+++++.|+++.+.+.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 56678999999999999999999999999999999999999999999999999999999999999999998886689999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+|||||++.|++|||++||++|++||+++.
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 999999999999999999999999999974
|
|
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=429.28 Aligned_cols=303 Identities=42% Similarity=0.575 Sum_probs=278.5
Q ss_pred hHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCC
Q 020636 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (323)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~ 86 (323)
+.|+++.|++++| ..|+|+.+|+++|.|+++|+++|++|.|+|++|.+++++|++|++||+++++||++|||++++|.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchH
Q 020636 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (323)
Q Consensus 87 ~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~ 166 (323)
+++|...+++|..+|.++++++++++++|++.+..+ ||+|+..+++...++++++..+||+.+++|+|.|+.++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999877644 9999989999999999999999999999999999999999
Q ss_pred HHHhhccCCCCccccccccccccCCCccccc----hhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEAND----SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 167 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
+|.++++..|+.....++.+....|-.+..+ ..+.++.....+|..+|+++.++++.|.+|+++||+.+++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 9999999888777766665533322111111 134556667788999999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.|+|+|++|||||+++|+++++++.|+++.++++++++|++|||||+|.|++|||++||++|++||+++.
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~ 307 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLY 307 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHH
Confidence 999999999999999999999999999999999998789999999999999999999999999999999875
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=394.86 Aligned_cols=262 Identities=59% Similarity=0.890 Sum_probs=246.9
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCc
Q 020636 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (323)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~ 87 (323)
.||+..|+++||+..|+|+.+|++++.|+++|+..|++|+|+||+|.+++++||+|+|||++++.||+++||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998887899
Q ss_pred HHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHH
Q 020636 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (323)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~ 167 (323)
+++..++++|+++|+++++|++++.+.+++.+..+++.|+|||...+++.+.++++++++.|+++|.+++|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999988999999988778999999987789999999999999999999999999974321
Q ss_pred HHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCC
Q 020636 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 247 (323)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Ga 247 (323)
..|+.++++++.+++|+++|++.+.++|+.+.++|+
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 357889999999999999999999999999999999
Q ss_pred CEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 248 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 248 d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
|+|+++||||++.++++++++.++++++.+++++|||++|||+++.|++|+|++|||+|++||+|+..
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~ 262 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYG 262 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 99999999999999999999999999988855699999999999999999999999999999998854
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=253.11 Aligned_cols=233 Identities=26% Similarity=0.316 Sum_probs=177.3
Q ss_pred hHHhhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-----
Q 020636 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----- 111 (323)
Q Consensus 39 N~~~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~----- 111 (323)
+...||+|+|+|+.|. +++++||+|+|+|.+++.||+++||+++......-+..+|++|.++|+++++++.+.
T Consensus 18 ~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 97 (326)
T cd02811 18 GSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDP 97 (326)
T ss_pred CCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccCh
Confidence 4567999999999997 889999999999999999999999987521111225799999999999999998742
Q ss_pred ---CCHHHHHhcCC-CceeEEeeecC----ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccc
Q 020636 112 ---SSVEEVASTGP-GIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (323)
Q Consensus 112 ---~~~eei~~~~~-~~~~~QLy~~~----d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~ 183 (323)
.+++.+++..+ .+++..+.... +.+...+ .++..+++++.++++++.. ..+|
T Consensus 98 e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~---~i~~~~adalel~l~~~q~----------~~~~------- 157 (326)
T cd02811 98 ELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR---AVEMIEADALAIHLNPLQE----------AVQP------- 157 (326)
T ss_pred hhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHH---HHHhcCCCcEEEeCcchHh----------hcCC-------
Confidence 12344455555 56566665433 4444333 3445678899998876531 0001
Q ss_pred ccccccCCCccccchhhHHHHhhccCCcc--CHHHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCCC
Q 020636 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR 258 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg~ 258 (323)
..+.++ ..+.|+++++.+++||++|++ .+.++|+.+.++|+|+|+|+|+||+
T Consensus 158 -----------------------~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt 214 (326)
T cd02811 158 -----------------------EGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGT 214 (326)
T ss_pred -----------------------CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCC
Confidence 112222 136799999999999999987 7899999999999999999999884
Q ss_pred C---------C-----------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 259 Q---------L-----------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 259 ~---------~-----------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
. . +.+.++.+.|+++++.+. ++|||++|||+++.|++|+|++|||+|++||+|+..
T Consensus 215 ~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~ 290 (326)
T cd02811 215 SWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKA 290 (326)
T ss_pred cccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Confidence 2 1 224566788888887764 799999999999999999999999999999988654
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=252.54 Aligned_cols=234 Identities=26% Similarity=0.316 Sum_probs=178.7
Q ss_pred Hhhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-------
Q 020636 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST------- 111 (323)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~------- 111 (323)
..||+|+|.|+.|. +++++||+|+|+|.+++.||+++||+++.--..+-+.++|++|+++|+++++++++.
T Consensus 28 ~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~ 107 (352)
T PRK05437 28 TGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPEL 107 (352)
T ss_pred CChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhh
Confidence 36999999999996 889999999999999999999999998521111335799999999999999999752
Q ss_pred -CCHHHHHhcCC-CceeEEeeecCChHH-HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccc
Q 020636 112 -SSVEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (323)
Q Consensus 112 -~~~eei~~~~~-~~~~~QLy~~~d~~~-~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~ 188 (323)
.+++.+++..| .+++..|+....... .++..+.++..+++++.++++++..-
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~------------------------- 162 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQEL------------------------- 162 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhh-------------------------
Confidence 12333455454 566776655333122 12333445567889999988765410
Q ss_pred cCCCccccchhhHHHHhhccCCcc--CHHHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCCCC----
Q 020636 189 LGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ---- 259 (323)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg~~---- 259 (323)
.++..+.++ ..+.++++++.+++||++|++ .+.++|+.+.++|+|+|+|+|+||+.
T Consensus 163 ---------------~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~i 227 (352)
T PRK05437 163 ---------------VQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAI 227 (352)
T ss_pred ---------------cCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccch
Confidence 001112222 246799999999999999987 78999999999999999999998832
Q ss_pred -----C---------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 260 -----L---------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 260 -----~---------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
. +.+.++.+.|.++++.+ .++|||++|||+++.|+.|+|++|||+|++||+|+..
T Consensus 228 e~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 228 ENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred hhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 1 34567888999988874 2799999999999999999999999999999998754
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=242.87 Aligned_cols=229 Identities=25% Similarity=0.346 Sum_probs=170.9
Q ss_pred hhcccccccccc--cCCCCCccceeecCcccccceEECcccccccCCcHH---HHHHHHHHHHcCCceeecCCCC-----
Q 020636 42 AFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEG---EYATARAASAAGTIMTLSSWST----- 111 (323)
Q Consensus 42 ~~~~i~l~pr~l--~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~---e~~~a~aa~~~G~~~~vs~~s~----- 111 (323)
.||+|+|+|..| .+++++||||+|+|+++++||+++||+++ ++.+ +..++++|+++|+++++++.+.
T Consensus 22 ~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 98 (333)
T TIGR02151 22 GFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGG---SEEAGKINRNLARAARELGIPMGVGSQRAALKDP 98 (333)
T ss_pred CcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCC---chhHHHHHHHHHHHHHHcCCCeEEcCchhhccCh
Confidence 499999999999 57899999999999999999999999875 3322 5699999999999999998652
Q ss_pred ---CCHHHHHhcCC-CceeEEeeecCChHH-HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccc
Q 020636 112 ---SSVEEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (323)
Q Consensus 112 ---~~~eei~~~~~-~~~~~QLy~~~d~~~-~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~ 186 (323)
.+.+.+++..+ .+.+..|......+. ..+..+.++..+++++.++++++.. .
T Consensus 99 ~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------~------------- 155 (333)
T TIGR02151 99 ETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------L------------- 155 (333)
T ss_pred hhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc----------c-------------
Confidence 12233444333 455555543222111 2233344455678889888876541 0
Q ss_pred cccCCCccccchhhHHHHhhccCCccC-H-HHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCCCCC-
Q 020636 187 LDLGKMDEANDSGLAAYVAGQIDRSLS-W-KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL- 260 (323)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg~~~- 260 (323)
.++..+.++. | +.++++++.+++||++|.+ .+.++|+.+.++|+|+|+|+++||+..
T Consensus 156 -----------------~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~ 218 (333)
T TIGR02151 156 -----------------VQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWA 218 (333)
T ss_pred -----------------cCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCccc
Confidence 0011222331 3 6799999999999999977 789999999999999999999988631
Q ss_pred -----------------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 261 -----------------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 261 -----------------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.+.++.+.|.++++ +..++|||++|||+++.|+.|+|++|||+|++||+|+.
T Consensus 219 ~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 219 QVENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLK 288 (333)
T ss_pred chhhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHH
Confidence 224455667777765 22379999999999999999999999999999999984
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=222.08 Aligned_cols=215 Identities=20% Similarity=0.194 Sum_probs=164.1
Q ss_pred hhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHH--
Q 020636 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-- 117 (323)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei-- 117 (323)
.||+++|+|..+. +++++|++|+|+|.+++.||++++|. . ..|..||++|+++|...++..+ +.|+.
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~-----t-~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ-----T-IIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc-----h-hhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 5999999999884 56799999999999999999999993 2 5788999999999999999874 34443
Q ss_pred --HhcCCCceeEEeeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCc
Q 020636 118 --ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (323)
Q Consensus 118 --~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G--~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
.+..+....+-+-....++..+ .++.+.++| .+.++ +|..+
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~~-r~~~lv~a~~~~d~i~--~D~ah-------------------------------- 118 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEYE-FVTQLAEEALTPEYIT--IDIAH-------------------------------- 118 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHHH-HHHHHHhcCCCCCEEE--EeCcc--------------------------------
Confidence 2333322233333333444333 334445566 45544 45433
Q ss_pred cccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcCCCCCCC--------CCCc
Q 020636 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVP 264 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~~gg~~~--------~~~~ 264 (323)
++....++.++++|+.++.|+++++ +.+.++|+.+.++|||+|.|++++|+.. ....
T Consensus 119 --------------g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 119 --------------GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred --------------CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 1222457789999999998866665 9999999999999999999998877642 1223
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 265 ~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+..+.++++++ ++|||+||||+++.|++|||++|||+||+|++|.++.
T Consensus 185 ~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~ 234 (321)
T TIGR01306 185 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHE 234 (321)
T ss_pred hHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcc
Confidence 4577899998877 7999999999999999999999999999999998875
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=214.44 Aligned_cols=216 Identities=18% Similarity=0.182 Sum_probs=164.9
Q ss_pred hhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 020636 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (323)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~- 118 (323)
.||+++|+|..|. +++++|++|+|+|++++.||++++|. . ..+..||++|+++|...++..+ +.|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-----t-~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-----T-IIDEKIAEWLAENGYFYIMHRF---DPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc-----c-hhHHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 4999999999884 66799999999999999999999993 2 5788999999999999888863 345432
Q ss_pred ---hcCCCceeEEeeecCChHHHHHHHHHHHHcCC--cEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCc
Q 020636 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (323)
Q Consensus 119 ---~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~--~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
+..+...+..+-...+++.. +.++.+.++|+ +.|. +|+...
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~--iD~a~g------------------------------- 122 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYIT--IDIAHG------------------------------- 122 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEE--EECCCC-------------------------------
Confidence 23343334445444444433 33444556655 7665 555431
Q ss_pred cccchhhHHHHhhccCCccCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCC------CCcc-
Q 020636 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD------YVPA- 265 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~------~~~~- 265 (323)
+.....+.|+++|+.++ .||++|.+.|.++++.+.++|+|+|.+++++|+... .+.+
T Consensus 123 ---------------h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~ 187 (326)
T PRK05458 123 ---------------HSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 187 (326)
T ss_pred ---------------chHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCc
Confidence 11123556999999996 777777899999999999999999999999996532 2344
Q ss_pred -hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 266 -TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 266 -~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.+..+.++++.+ ++|||++|||+++.|+.|+|++||++||+|++|.++.+
T Consensus 188 w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~e 238 (326)
T PRK05458 188 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEE 238 (326)
T ss_pred cHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCcc
Confidence 455688888877 79999999999999999999999999999999987543
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=211.63 Aligned_cols=218 Identities=22% Similarity=0.210 Sum_probs=167.0
Q ss_pred hhccccccccc--ccCCCCCccceeecCc-----ccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCH
Q 020636 42 AFSRILFRPRI--LIDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV 114 (323)
Q Consensus 42 ~~~~i~l~pr~--l~~~~~~d~~t~i~g~-----~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ 114 (323)
.|+++.|+|+. +...+++|++++|..+ .+..||+-|.|-.. ++..+|.+.+++|...+++-+ .++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk~--~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHKH--YSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEeeC--CCH
Confidence 69999999974 3455899999999744 78999999998543 677999999999999999963 345
Q ss_pred HHHH----hcCCCc-eeEEeeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCCchHHHHhhccCCCCcccccccccc
Q 020636 115 EEVA----STGPGI-RFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (323)
Q Consensus 115 eei~----~~~~~~-~~~QLy~~~d~~~~~~~~~~a~~~G--~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~ 187 (323)
|+.. ...+.. ...-+-..-.++ ..+.++.+.+++ ++.|+ +|+.+
T Consensus 81 e~~~~~v~~~~~~~~~~~~vsvG~~~~-d~er~~~L~~a~~~~d~iv--iD~Ah-------------------------- 131 (343)
T TIGR01305 81 DEWKAFATNSSPDCLQNVAVSSGSSDN-DLEKMTSILEAVPQLKFIC--LDVAN-------------------------- 131 (343)
T ss_pred HHHHHHHHhhcccccceEEEEeccCHH-HHHHHHHHHhcCCCCCEEE--EECCC--------------------------
Confidence 5532 222211 111111122222 233445555554 67666 45433
Q ss_pred ccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEc-----CCCCCCCC
Q 020636 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQLD 261 (323)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs-----~~gg~~~~ 261 (323)
++.....+.|+|||+.|+.+.++|| +.|+|+|+.++++|||+|.|+ +|++|+.+
T Consensus 132 --------------------Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~ 191 (343)
T TIGR01305 132 --------------------GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKT 191 (343)
T ss_pred --------------------CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeC
Confidence 1222357789999999988888888 999999999999999999998 88899998
Q ss_pred CCc-chHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 262 YVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 262 ~~~-~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+ |.+++++++++++.. ++|||+||||+++.|++|||++|||+||+|++|.++.
T Consensus 192 Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~ 248 (343)
T TIGR01305 192 GVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHT 248 (343)
T ss_pred CCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcC
Confidence 876 899999999998865 7999999999999999999999999999999998865
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-23 Score=195.31 Aligned_cols=249 Identities=19% Similarity=0.246 Sum_probs=157.9
Q ss_pred hhcccccccccc--cCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCC----CCCCHH
Q 020636 42 AFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSVE 115 (323)
Q Consensus 42 ~~~~i~l~pr~l--~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~----s~~~~e 115 (323)
.||++.|+|. + .+.+++|+++.+.+..++.||+++||.+. ++..++.+++++|...+++.. ...+.+
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gV------t~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAV------VSPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCccc------CCHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 6999999998 4 45688999999999999999999999764 455899999999997777721 122344
Q ss_pred HHHh----cCCC---ceeEEeee-cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccccccc
Q 020636 116 EVAS----TGPG---IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (323)
Q Consensus 116 ei~~----~~~~---~~~~QLy~-~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~ 187 (323)
++.+ ..+. ...-++|. +.+++.+.++++.+++++ +.+++... .....++-... ...++..-.+.+
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~---V~v~vr~~--~~~~~e~a~~l-~eaGvd~I~vhg- 162 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAG---VIVAVSLS--PQRAQELAPTV-VEAGVDLFVIQG- 162 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCe---EEEEEecC--CcCHHHHHHHH-HHCCCCEEEEec-
Confidence 4332 1110 00011111 345677777777777654 22222210 00011110000 000011000000
Q ss_pred ccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC------CC
Q 020636 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LD 261 (323)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~------~~ 261 (323)
... -..| ..+.-.|+.+.++++..++||+.+.+.+.++|+.+.++|||+|.+..++|+. ..
T Consensus 163 --------rt~-~~~h----~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g 229 (368)
T PRK08649 163 --------TVV-SAEH----VSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLG 229 (368)
T ss_pred --------cch-hhhc----cCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCC
Confidence 000 0001 1112257777777777899999989999999999999999999986444421 11
Q ss_pred CCcchHHHHHHHHHHhc--------CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 262 YVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 262 ~~~~~~~~l~~i~~~~~--------~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.+.|.+..+.++.+... .++|||++|||+++.|++|||++|||+||+|++|+++.+
T Consensus 230 ~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~E 293 (368)
T PRK08649 230 IGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAE 293 (368)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhccccc
Confidence 24567777777664321 148999999999999999999999999999999998654
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-23 Score=193.28 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=162.2
Q ss_pred hhcccccccccc-cCCCCCccceeecC-cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~g-~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|... .+.+++|++|+|.+ ..++.||+.|||.+. ++..++.+.+++|...+++.. .+.++..+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~~--~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHRN--MSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeCC--CCHHHHHH
Confidence 599999999765 56788999999988 889999999999764 455899999999998887743 34455432
Q ss_pred ----cCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc
Q 020636 120 ----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (323)
Q Consensus 120 ----~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
..+.....+.. ..+++ ..+.++.+.++|++.|+++. .. |
T Consensus 75 ~i~~vk~~l~v~~~~-~~~~~-~~~~~~~l~eagv~~I~vd~--~~-G-------------------------------- 117 (325)
T cd00381 75 EVRKVKGRLLVGAAV-GTRED-DKERAEALVEAGVDVIVIDS--AH-G-------------------------------- 117 (325)
T ss_pred HHHHhccCceEEEec-CCChh-HHHHHHHHHhcCCCEEEEEC--CC-C--------------------------------
Confidence 22222233332 22322 34556666678998887653 11 0
Q ss_pred cchhhHHHHhhccCCccCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC------CCCCCcchHH
Q 020636 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIM 268 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~------~~~~~~~~~~ 268 (323)
++...++.++++++..+ +|+++..+.+.++|+.+.++|+|+|+++..+|. ....+.+.+.
T Consensus 118 -------------~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~ 184 (325)
T cd00381 118 -------------HSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQAT 184 (325)
T ss_pred -------------CcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHH
Confidence 11123567889998874 888888899999999999999999999543321 1234567888
Q ss_pred HHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 269 ALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 269 ~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.+.++.+.+.. ++|||++|||+++.|+.|+|++||++||+||+|+++.+
T Consensus 185 ~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~E 234 (325)
T cd00381 185 AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE 234 (325)
T ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccccc
Confidence 88888876632 59999999999999999999999999999999999764
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=190.69 Aligned_cols=214 Identities=18% Similarity=0.173 Sum_probs=164.9
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCC-H------H-HHHhc--CCCceeEEeeecC
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-V------E-EVAST--GPGIRFFQLYVYK 133 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~-~------e-ei~~~--~~~~~~~QLy~~~ 133 (323)
+|.+.+++.|+++|||++. ++.++++.|.++|..++++++-+.. + . ..... .+.+..+||+ ..
T Consensus 2 ~i~~~~~~~~~~lAPM~g~------td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGI------TDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GS 74 (321)
T ss_pred ccCCccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CC
Confidence 3566788899999999875 5779999999999999888874421 1 0 01111 1246679997 57
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
|++.+.+.++++++.|++.|.+|++||+. ++. ..+.|+++ ..+|++.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~---------------~v~------------~~g~Gs~l------l~~p~~~ 121 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK---------------KVN------------RKLAGSAL------LQYPDLV 121 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH---------------HHc------------CCCcccHH------hcCHHHH
Confidence 88888888888888999999999999972 000 01112222 2367788
Q ss_pred HHHHHHHHHhcCCCEEEecc----C----CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTITKLPILVKGV----L----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i----~----~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+++.++.|+.+|.. . ..+-++.+.++|+|.|.+++....+...+...++.+.++++.+ ++|||+
T Consensus 122 ~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~ 199 (321)
T PRK10415 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIA 199 (321)
T ss_pred HHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEE
Confidence 88899999999999999963 1 2355778899999999996544334445667889999999988 899999
Q ss_pred ecCCCCHHHHHHHHH-cCCCEEEEccccccCcchh
Q 020636 286 DGGVRRGTDVFKALA-LGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 286 ~GGI~~~~di~kal~-lGAd~V~iG~~~~~~~~~~ 319 (323)
+|||.|++|+.+++. .|||+||+||+++++|+.-
T Consensus 200 nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if 234 (321)
T PRK10415 200 NGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234 (321)
T ss_pred eCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHH
Confidence 999999999999997 6999999999999999753
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-23 Score=195.73 Aligned_cols=252 Identities=19% Similarity=0.208 Sum_probs=158.8
Q ss_pred HHhhcccccccc-cccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCC----CCCCH
Q 020636 40 RNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSV 114 (323)
Q Consensus 40 ~~~~~~i~l~pr-~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~----s~~~~ 114 (323)
...||+|.|+|. .-++.+++||++.+.+.+++.||++|||++. .+.+++.++.++|.+.+++.- .....
T Consensus 12 ~~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagV------td~~fr~~~~~~Galgvvsaegl~~~~~~~ 85 (369)
T TIGR01304 12 TYSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDAL------VSPEFAIELGELGGLGVLNLEGLWGRHEDP 85 (369)
T ss_pred cCCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCcc------cCHHHHHHHHHcCCcccccchHHHhcCCCH
Confidence 558999999996 5588899999999999999999999999875 455999999999997777631 11111
Q ss_pred HH----HHhcCCC-------ceeEEeee-cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccc
Q 020636 115 EE----VASTGPG-------IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (323)
Q Consensus 115 ee----i~~~~~~-------~~~~QLy~-~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~ 182 (323)
+. |...... ....++|. +.+++.+.++++.++++++. +-+-++ | ....++-... +..++.+-
T Consensus 86 ~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~---~~~~e~a~~l-~eAGad~I 159 (369)
T TIGR01304 86 DPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-P---QNAREIAPIV-VKAGADLL 159 (369)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceE-EEEecC-C---cCHHHHHHHH-HHCCCCEE
Confidence 21 1111000 00011111 23566666666666665521 112221 1 0111110000 00000000
Q ss_pred cccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC--
Q 020636 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-- 260 (323)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~-- 260 (323)
.+. +. . ....+. ...-.|..+.++++..++||+++++.+.++|+.+.++|||+|.++.+|+...
T Consensus 160 ~ih----gr-----t-~~q~~~----sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~ 225 (369)
T TIGR01304 160 VIQ----GT-----L-VSAEHV----STSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRL 225 (369)
T ss_pred EEe----cc-----c-hhhhcc----CCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccc
Confidence 000 00 0 000010 1123588888888889999999899999999999999999998654444221
Q ss_pred --CCCcchHHHHHHHHHHh-------cC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 261 --DYVPATIMALEEVVKAT-------QG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 261 --~~~~~~~~~l~~i~~~~-------~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
..+.+....+.++.++. ++ .+|||++|||+++.|++|+|++|||+|++|++|+.+.+
T Consensus 226 ~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 226 VLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAE 292 (369)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhc
Confidence 22456666777765432 22 49999999999999999999999999999999987643
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=187.68 Aligned_cols=212 Identities=22% Similarity=0.226 Sum_probs=162.2
Q ss_pred ecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-CC-------HHHHHhcC--CCceeEEeeecCC
Q 020636 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-SS-------VEEVASTG--PGIRFFQLYVYKD 134 (323)
Q Consensus 65 i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~-~~-------~eei~~~~--~~~~~~QLy~~~d 134 (323)
|.|.+++.|+++|||.+. ++.++++.++++|..++.+++.+ .+ ..++.... +.+..+||. ..+
T Consensus 1 ~~~~~~~~~l~lAPm~~~------t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~ 73 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGV------TDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSD 73 (319)
T ss_pred CCCccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCC
Confidence 356788999999999875 56799999999999888888732 11 12222222 257899997 578
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCH
Q 020636 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (323)
Q Consensus 135 ~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
++.+.+.+++++++|+++|.||+.||.. +|.+. +.|+.+ ..+|++..
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~~~--------------------------~~Gs~l------~~~~~~~~ 120 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVP-KITKK--------------------------GAGSAL------LRDPDLIG 120 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHH-HhcCC--------------------------CccchH------hCCHHHHH
Confidence 8889999999999999999999999952 11100 011111 12566778
Q ss_pred HHHHHHHHhcCCCEEEecc--------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 215 KDVKWLQTITKLPILVKGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i--------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
+.++++++.++.||.+|.. ...+.++.+.++|+|.|.++++...+...++..++.+.++++.+ ++|||++
T Consensus 121 ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n 198 (319)
T TIGR00737 121 KIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGN 198 (319)
T ss_pred HHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEe
Confidence 8899999999999999953 12455788899999999996543222233456788999999888 7999999
Q ss_pred cCCCCHHHHHHHHH-cCCCEEEEccccccCcch
Q 020636 287 GGVRRGTDVFKALA-LGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 287 GGI~~~~di~kal~-lGAd~V~iG~~~~~~~~~ 318 (323)
|||.+++|+.++++ .|||+||+||+++.+|++
T Consensus 199 GgI~~~~da~~~l~~~gad~VmigR~~l~~P~l 231 (319)
T TIGR00737 199 GDIFSPEDAKAMLETTGCDGVMIGRGALGNPWL 231 (319)
T ss_pred CCCCCHHHHHHHHHhhCCCEEEEChhhhhCChH
Confidence 99999999999994 789999999999999975
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=187.35 Aligned_cols=219 Identities=21% Similarity=0.233 Sum_probs=154.2
Q ss_pred Hhhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH
Q 020636 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (323)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~ 118 (323)
..||++.|+|... ...+++|++|.+. ...+..||+.|||... ++..+|.+.+++|...+++. ..+.|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 3699999999765 4567889999885 5678999999999764 34589999999999999984 35566543
Q ss_pred hcC------C--Ccee------------------E------------------------Eeee----cCChHHHHHHHHH
Q 020636 119 STG------P--GIRF------------------F------------------------QLYV----YKDRNVVAQLVRR 144 (323)
Q Consensus 119 ~~~------~--~~~~------------------~------------------------QLy~----~~d~~~~~~~~~~ 144 (323)
+.. . .... + ||+. ...++ +.+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~-~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDID-TIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHH-HHHHHHH
Confidence 211 0 0000 0 0111 11111 2334444
Q ss_pred HHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc
Q 020636 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT 224 (323)
Q Consensus 145 a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 224 (323)
+.++|++.|+| |+.. +++...++.++++++.+
T Consensus 161 lv~aGvDvI~i--D~a~----------------------------------------------g~~~~~~~~v~~ik~~~ 192 (404)
T PRK06843 161 LVKAHVDILVI--DSAH----------------------------------------------GHSTRIIELVKKIKTKY 192 (404)
T ss_pred HHhcCCCEEEE--ECCC----------------------------------------------CCChhHHHHHHHHHhhC
Confidence 44556655543 3321 12223467899999998
Q ss_pred -CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCC-----CCCCC-CcchHHHHHHHHHHhc-CCCeEEEecCCCCHHHHH
Q 020636 225 -KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLDY-VPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVF 296 (323)
Q Consensus 225 -~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg-----~~~~~-~~~~~~~l~~i~~~~~-~~~pvia~GGI~~~~di~ 296 (323)
+.+++++++.|.++|+.+.++|+|+|.++...| +..++ +.|.+..+.++.+.+. .++|||++|||+++.|+.
T Consensus 193 p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~ 272 (404)
T PRK06843 193 PNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVV 272 (404)
T ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence 688999999999999999999999999853222 33333 4567777766665542 269999999999999999
Q ss_pred HHHHcCCCEEEEccccccCc
Q 020636 297 KALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 297 kal~lGAd~V~iG~~~~~~~ 316 (323)
|||++||++||+|++|.++.
T Consensus 273 KALalGA~aVmvGs~~agt~ 292 (404)
T PRK06843 273 KAIAAGADSVMIGNLFAGTK 292 (404)
T ss_pred HHHHcCCCEEEEcceeeeee
Confidence 99999999999999998864
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=184.20 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=158.8
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcC-CceeecCCCCC--------CHHHHHh------c--CCCceeEEeeecCC
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------T--GPGIRFFQLYVYKD 134 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G-~~~~vs~~s~~--------~~eei~~------~--~~~~~~~QLy~~~d 134 (323)
+|+++|||++. ++.++++.|.++| ...++++|.+. ....+.. . .+.+..+||+ ..|
T Consensus 1 ~~~~lAPMag~------td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGV------LDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCC------cCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 58999999885 5779999999999 78889987431 1111111 1 1267999998 578
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCH
Q 020636 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (323)
Q Consensus 135 ~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
++.+.+.++++++.|++.|.||++||+. ++. +.+.|+++ ..+|++..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~---------------~v~------------~~g~Gs~L------l~~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK---------------TVN------------GSGGGATL------LKDPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch---------------HHh------------cCCCchHh------hcCHHHHH
Confidence 9988888999999999999999999972 110 01122222 23677788
Q ss_pred HHHHHHHHhcC--CCEEEecc---C----CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEE
Q 020636 215 KDVKWLQTITK--LPILVKGV---L----TAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 215 ~~i~~i~~~~~--~pv~vK~i---~----~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvi 284 (323)
+.++.+++.++ +||.+|.. . ..+-++.+.++|+|.|.|+++...+...+++ .++.+.++++.+ ++|||
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 88999999884 89999943 2 2345788889999999996554434444443 788999999988 89999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEccccccCcchh
Q 020636 285 LDGGVRRGTDVFKALA-LGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 285 a~GGI~~~~di~kal~-lGAd~V~iG~~~~~~~~~~ 319 (323)
++|||.|++|+.++++ .|||+|||||.++++||+=
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf 234 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLS 234 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHH
Confidence 9999999999999996 6899999999999999864
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-22 Score=185.74 Aligned_cols=219 Identities=22% Similarity=0.289 Sum_probs=150.6
Q ss_pred hhcccccccccc---cCCCCCccceee-cCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH-
Q 020636 42 AFSRILFRPRIL---IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE- 116 (323)
Q Consensus 42 ~~~~i~l~pr~l---~~~~~~d~~t~i-~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee- 116 (323)
.||++.|+|... .+..++|+++.+ -+.+++.||+-|||... +|..+|.+.++.|...++.-. .++|+
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtV------te~~mAiama~~Gglgvih~~--~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTV------TESEMAIAMARLGGLGVIHRN--MSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTT------SSHHHHHHHHHTTSEEEEESS--SCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCcccc------chHHHHHHHHHhcCCceecCC--CCHHHH
Confidence 599999999764 455566666556 68899999999998543 466899999999999999864 34443
Q ss_pred ------HHhcCC-------CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccc
Q 020636 117 ------VASTGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (323)
Q Consensus 117 ------i~~~~~-------~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~ 183 (323)
+.+..| +...+-......++ ..+.++.+.++|++.|+| |+.+.
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~-~~er~~~L~~agvD~ivI--D~a~g--------------------- 131 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDD-DFERAEALVEAGVDVIVI--DSAHG--------------------- 131 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTC-HHHHHHHHHHTT-SEEEE--E-SST---------------------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCHH-HHHHHHHHHHcCCCEEEc--cccCc---------------------
Confidence 222111 12222222222221 234455566789998875 43331
Q ss_pred ccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC--
Q 020636 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-- 260 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~-- 260 (323)
+.....+.++++|+.++ +||+...+.|.+-++.+.++|||+|.|.-.+|.-.
T Consensus 132 -------------------------~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtT 186 (352)
T PF00478_consen 132 -------------------------HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTT 186 (352)
T ss_dssp -------------------------TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHH
T ss_pred -------------------------cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccc
Confidence 11123567899999996 99999999999999999999999999975545322
Q ss_pred ----CCCcchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 261 ----DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 261 ----~~~~~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
-.+.|.+.++.++.++... .+|||+||||+++.|+.|||++|||+||+|++|.++.+
T Consensus 187 r~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~E 248 (352)
T PF00478_consen 187 REVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE 248 (352)
T ss_dssp HHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTT
T ss_pred ccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcC
Confidence 2256788888888877642 69999999999999999999999999999999998764
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=182.87 Aligned_cols=214 Identities=21% Similarity=0.201 Sum_probs=169.1
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCC-ceeecCCCCC---------CHHHHHhc-CCCceeEEeeec
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS---------SVEEVAST-GPGIRFFQLYVY 132 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~s~~---------~~eei~~~-~~~~~~~QLy~~ 132 (323)
.+....++.++++|||++. +|..+++.++++|. ..++|+|.+. ++..+... .+.+..+||. .
T Consensus 3 ~~~~~~~~~~~~lAPM~gv------td~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g 75 (323)
T COG0042 3 KIGLIELRNRVILAPMAGV------TDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-G 75 (323)
T ss_pred ccccccccCcEEEecCCCC------ccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-C
Confidence 3456677899999999875 67899999999999 9999987431 11111111 1367899997 5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.|++.+.+..+.+++.|++.|.||++||+. ++. ..+.|+++ ..+|++
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~------------~~g~Ga~L------l~~p~l 122 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVV------------KGGAGAAL------LKNPEL 122 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------Hhc------------CCCcchhh------cCCHHH
Confidence 889999999999999999999999999973 111 11223333 247888
Q ss_pred CHHHHHHHHHhcC-CCEEEecc---C-----CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITK-LPILVKGV---L-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i---~-----~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..+.|+.+++.++ +||.||.. . ..+-++.+.++|++.+.|+++...+...++..++.+.++++.++. +||
T Consensus 123 v~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~-ipv 201 (323)
T COG0042 123 LAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS-IPV 201 (323)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC-CeE
Confidence 8889999999995 99999943 1 235688999999999999655444555667899999999999942 999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEEEccccccCcch
Q 020636 284 FLDGGVRRGTDVFKALA-LGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 284 ia~GGI~~~~di~kal~-lGAd~V~iG~~~~~~~~~ 318 (323)
|++|+|.|.+|+.+.|+ .|||+||+||..+++|+-
T Consensus 202 i~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l 237 (323)
T COG0042 202 IANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWL 237 (323)
T ss_pred EeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcH
Confidence 99999999999999999 689999999999999984
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=174.31 Aligned_cols=215 Identities=22% Similarity=0.272 Sum_probs=151.1
Q ss_pred ccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCCC--------------------------
Q 020636 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~~-------------------------- 112 (323)
|++|+++|.+|++||++|+-... .+....+.+..+|..+++. |.+..
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPT------TSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCC------CCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 67899999999999999982221 1223444444556654432 22111
Q ss_pred -------CHHH----HH---hcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCC
Q 020636 113 -------SVEE----VA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (323)
Q Consensus 113 -------~~ee----i~---~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~ 177 (323)
.++. +. ...+ .+...|++...+++...+.++++++.|++++.+|+.||....+
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~------------ 142 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPE------------ 142 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCC------------
Confidence 0222 22 1122 5678999754488888889999988999999999999973100
Q ss_pred ccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH----HHHHHHHHcCCCEEEEc
Q 020636 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 253 (323)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~----e~a~~~~~~Gad~i~vs 253 (323)
+ +.+..+ ..+|+...+.++++++.+++||++|..... +.++.+.++|+|+|+++
T Consensus 143 ----~------------~~G~~l------~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 143 ----R------------GMGAAV------GQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred ----C------------CCchhh------ccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 0 000000 125566677899999988999999976433 66888999999999988
Q ss_pred CCCCC---------------------CCCCC----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 254 NHGAR---------------------QLDYV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 254 ~~gg~---------------------~~~~~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
|+... +...+ +.+++.+.++++.+.+++|||++|||++++|+.+++.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 75421 01112 234788999998886579999999999999999999999999999
Q ss_pred cccccc
Q 020636 309 SIMPCQ 314 (323)
Q Consensus 309 G~~~~~ 314 (323)
||+++.
T Consensus 281 ~ta~~~ 286 (299)
T cd02940 281 CTAVMN 286 (299)
T ss_pred ceeecc
Confidence 999876
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=175.01 Aligned_cols=217 Identities=18% Similarity=0.140 Sum_probs=158.1
Q ss_pred hhcccccccccc--cCCCCCccceeec-----CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCH
Q 020636 42 AFSRILFRPRIL--IDVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV 114 (323)
Q Consensus 42 ~~~~i~l~pr~l--~~~~~~d~~t~i~-----g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ 114 (323)
.|+++.|+|+.. ...+++|++.+|. ...+..||+-|+|-.. ++..+|++.+++|...+++-+ .++
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk~--~~~ 81 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHKH--YSV 81 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEecC--CCH
Confidence 699999999754 4456899988775 4557899999998543 677999999999999999963 355
Q ss_pred HHHHh----cCC---CceeEEeeecCChHHHHHHHHHHHH--cCCcEEEEecCCCCCCchHHHHhhccCCCCcccccccc
Q 020636 115 EEVAS----TGP---GIRFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (323)
Q Consensus 115 eei~~----~~~---~~~~~QLy~~~d~~~~~~~~~~a~~--~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~ 185 (323)
|+..+ ..+ ....+ -..-.++. .+.++.+.+ +|++.|+| |+.+
T Consensus 82 e~~~~fv~~~~~~~~~~~~v--avG~~~~d-~er~~~L~~~~~g~D~ivi--D~Ah------------------------ 132 (346)
T PRK05096 82 EEWAAFVNNSSADVLKHVMV--STGTSDAD-FEKTKQILALSPALNFICI--DVAN------------------------ 132 (346)
T ss_pred HHHHHHHHhccccccceEEE--EecCCHHH-HHHHHHHHhcCCCCCEEEE--ECCC------------------------
Confidence 65332 221 11111 22223332 233444444 57887764 4433
Q ss_pred ccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC----
Q 020636 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL---- 260 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~---- 260 (323)
++.....+.|+++|+.+ +.+|+...+.|.|-++.++++|||+|.|.-..|.-.
T Consensus 133 ----------------------Ghs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~ 190 (346)
T PRK05096 133 ----------------------GYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRV 190 (346)
T ss_pred ----------------------CcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCcc
Confidence 11223467899999998 588899999999999999999999999865444321
Q ss_pred --CCCcchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 261 --DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 261 --~~~~~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
--+.|.+.++.++.++... .+|||+||||++..|++|||++|||+||+|++|.++.+
T Consensus 191 vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~E 250 (346)
T PRK05096 191 KTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEE 250 (346)
T ss_pred ccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCccc
Confidence 1245678888888776532 68999999999999999999999999999999999764
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=177.97 Aligned_cols=204 Identities=18% Similarity=0.211 Sum_probs=153.9
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCC-ceeecCCCCC------CHHHHHhcCC--CceeEEeeecCChHHHHHHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~s~~------~~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~ 143 (323)
||++|||++. +|.++++.|+++|. ..++++|.+. ...++....+ .+..+||+ ..|++.+.+.++
T Consensus 2 ~~~lAPM~g~------Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDW------TDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCC------cCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 7999999885 57799999999998 7888887431 1222322222 67999998 579999999999
Q ss_pred HHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh
Q 020636 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (323)
Q Consensus 144 ~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 223 (323)
.+++.|++.|.||++||+.- +. +.+.|+++ ..+|++..+.++.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~---------------v~------------~~g~Gs~L------l~~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDR---------------VQ------------NGNFGACL------MGNADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHHH---------------hC------------CCCeehHh------hcCHHHHHHHHHHHHHH
Confidence 99999999999999999731 00 01112222 13677778899999999
Q ss_pred cCCCEEEeccC------C----HHHHHHHHHcCCCEEEEcCCCC-CCCC-------CCcchHHHHHHHHHHhcCCCeEEE
Q 020636 224 TKLPILVKGVL------T----AEDARIAVQAGAAGIIVSNHGA-RQLD-------YVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 224 ~~~pv~vK~i~------~----~e~a~~~~~~Gad~i~vs~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
++.||.+|... + .+-++.+.++|+|.|.|+++.. .+.. ..+..++.+.++++.++ ++|||+
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~ 200 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEI 200 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEE
Confidence 99999999642 1 1237888899999999955421 1111 12335777888887764 699999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+|||+|.+|+.+++. |||+|||||+++++||.
T Consensus 201 NGdI~s~~da~~~l~-g~dgVMigRgal~nP~i 232 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS-HVDGVMVGREAYENPYL 232 (318)
T ss_pred ECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHH
Confidence 999999999999996 99999999999999985
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=173.45 Aligned_cols=212 Identities=23% Similarity=0.286 Sum_probs=151.3
Q ss_pred cceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecC-C--------------------------CCCC
Q 020636 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-W--------------------------STSS 113 (323)
Q Consensus 61 ~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~-~--------------------------s~~~ 113 (323)
++|+|+|.++++||++||...+ . ++ ...+.+.+.|..+++.. . .+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~---~--~~-~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMG---S--GV-ESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCC---C--CH-HHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 4789999999999999994221 1 22 23444555688877661 1 1112
Q ss_pred HHH----HHhc---CCCceeEEeeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCCchHHHHhhccCCCCccccccc
Q 020636 114 VEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (323)
Q Consensus 114 ~ee----i~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G--~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~ 184 (323)
.+. +... .+.+.++||+ ..+++.+.+.++.+++++ ++++.+|+.||.... .
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~--------~----------- 134 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKG--------G----------- 134 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCC--------C-----------
Confidence 322 2221 1247899997 467888888888888763 899999999997410 0
Q ss_pred cccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH----HHHHHHHHcCCCEEEEcCCC-CCC
Q 020636 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-ARQ 259 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~----e~a~~~~~~Gad~i~vs~~g-g~~ 259 (323)
+.. + ..++++..+.++++|+.++.||.+|...+. +.++.+.++|+|+|+++|+- ++.
T Consensus 135 ------------g~~---l---~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 135 ------------GIA---I---GQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred ------------ccc---c---ccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 000 0 125566788999999999999999987543 44778899999999998742 211
Q ss_pred CC------------C---Ccc----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 260 LD------------Y---VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 260 ~~------------~---~~~----~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
.+ + +++ .++.+.++++.+ ++|||++|||++++|+.+++.+|||+|++||+++..|++
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~ 272 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFA 272 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchH
Confidence 10 1 111 346777888777 799999999999999999999999999999999999865
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=169.27 Aligned_cols=213 Identities=23% Similarity=0.266 Sum_probs=155.5
Q ss_pred ccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceee-cCCCC--------------------------C
Q 020636 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~s~--------------------------~ 112 (323)
|++|+++|.+|++||++|+-... .+..+++.+.+.|..+++ .|.+. .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG------FGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC------CCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 67899999999999999972121 122567777788877664 34321 1
Q ss_pred CH----HHHHhc---CCCceeEEeeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCCchHHHHhhccCCCCccccccc
Q 020636 113 SV----EEVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (323)
Q Consensus 113 ~~----eei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G-~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~ 184 (323)
.+ +++.+. ...+..+|+. ..+.+...+.+++++++| ++++.||+.||..... +..
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g------g~~---------- 137 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG------GMA---------- 137 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC------ccc----------
Confidence 12 223221 1356889996 457888888999999999 9999999999973100 000
Q ss_pred cccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH----HHHHHHHHcCCCEEEEcCCC-CCC
Q 020636 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-ARQ 259 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~----e~a~~~~~~Gad~i~vs~~g-g~~ 259 (323)
+ ..++++.++.++++|+.++.||++|...+. +.++.+.++|+|+|+++|.. +..
T Consensus 138 ------------------~---~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~ 196 (301)
T PRK07259 138 ------------------F---GTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMA 196 (301)
T ss_pred ------------------c---ccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccc
Confidence 0 124567788999999999999999987544 34788899999999987632 110
Q ss_pred ----------------CCC---CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 260 ----------------LDY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 260 ----------------~~~---~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+.+ .+..++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||+++..|++
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~ 272 (301)
T PRK07259 197 IDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYA 272 (301)
T ss_pred cccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHH
Confidence 000 122567888888887 799999999999999999999999999999999987764
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=172.98 Aligned_cols=210 Identities=16% Similarity=0.146 Sum_probs=156.3
Q ss_pred cccccceEECcccccccCCcHHHHHHHHHHHHcCC-ceeecCCCCC------CHHHHHhcC--CCceeEEeeecCChHHH
Q 020636 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTG--PGIRFFQLYVYKDRNVV 138 (323)
Q Consensus 68 ~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~s~~------~~eei~~~~--~~~~~~QLy~~~d~~~~ 138 (323)
.....|+++|||++. +|.++++.|+++|. ..++++|.+. ...+..... +.+..+||+ ..|++.+
T Consensus 7 ~~~~~~~~lAPM~g~------td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~ 79 (333)
T PRK11815 7 KLPSRRFSVAPMMDW------TDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPADL 79 (333)
T ss_pred cCCCCCEEEeCCCCC------cCHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHHH
Confidence 345679999999885 57799999999997 7888887321 122222222 268999998 5789999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
.+.+++++++|++.|.||++||..-.| +.+.|+.+ ..+|++..+.++
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~---------------------------~~~~Gs~L------~~~p~~~~eiv~ 126 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQ---------------------------NGRFGACL------MAEPELVADCVK 126 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHcc---------------------------CCCeeeHH------hcCHHHHHHHHH
Confidence 999999999999999999999973111 00112221 236778888999
Q ss_pred HHHHhcCCCEEEecc---C---C----HHHHHHHHHcCCCEEEEcCCCC-CCC-------CCCcchHHHHHHHHHHhcCC
Q 020636 219 WLQTITKLPILVKGV---L---T----AEDARIAVQAGAAGIIVSNHGA-RQL-------DYVPATIMALEEVVKATQGR 280 (323)
Q Consensus 219 ~i~~~~~~pv~vK~i---~---~----~e~a~~~~~~Gad~i~vs~~gg-~~~-------~~~~~~~~~l~~i~~~~~~~ 280 (323)
.+++.++.||.+|.. . + .+-++.+.++|+|.|.+++..+ .+. ...+..++.+.++++.+. +
T Consensus 127 avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ 205 (333)
T PRK11815 127 AMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-H 205 (333)
T ss_pred HHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-C
Confidence 999999999999952 1 1 2336788899999999975322 111 112345788888887643 6
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchh
Q 020636 281 IPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 281 ~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
+|||++|||+|.+|+.++++ |||+|||||+++.+|++=
T Consensus 206 iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~ 243 (333)
T PRK11815 206 LTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLL 243 (333)
T ss_pred CeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHH
Confidence 99999999999999999997 799999999999999863
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=175.09 Aligned_cols=202 Identities=25% Similarity=0.265 Sum_probs=137.4
Q ss_pred EECcccccccCCcHHHHHHHHHHHHcCCc-eeecCCCCC------C--HHHHHhcCC--CceeEEeeecCChHHHHHHHH
Q 020636 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS------S--VEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (323)
Q Consensus 75 ~iaPm~~~~l~~~~~e~~~a~aa~~~G~~-~~vs~~s~~------~--~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~ 143 (323)
++|||.+. ++.+++..+.++|.. .++++|.+. + ..+.....+ .+..+||. ..|++.+.+.++
T Consensus 1 ~LAPM~g~------td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGV------TDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTT------SSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCC------chHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 58999875 567999999999999 889987431 0 111111122 57999998 589999888888
Q ss_pred HHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh
Q 020636 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (323)
Q Consensus 144 ~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 223 (323)
.+.+.|++.|+||++||.. .-.+ .+.|+++. .+|+...+.++.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~----~v~~-----------------------~g~Ga~Ll------~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP----KVTK-----------------------GGAGAALL------KDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH----HHHH-----------------------CT-GGGGG------C-HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH----HHhc-----------------------CCcChhhh------cChHHhhHHHHhhhcc
Confidence 8888899999999999983 1111 12233332 3677777889999999
Q ss_pred cCCCEEEecc---C-----CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 224 TKLPILVKGV---L-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 224 ~~~pv~vK~i---~-----~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
+++||.+|.. . +.+-++.+.++|++.|.|+++...+...+++.++.+.++++.+ ++|||++|||.|.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 9999999953 2 2455889999999999998777667777789999999999998 6999999999999999
Q ss_pred HHHHHc-CCCEEEEccccccCcch
Q 020636 296 FKALAL-GASGIFVSIMPCQCPLT 318 (323)
Q Consensus 296 ~kal~l-GAd~V~iG~~~~~~~~~ 318 (323)
.+.+.. |||+|||||.++++||.
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~l 222 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWL 222 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCH
T ss_pred HHHHHhcCCcEEEEchhhhhcCHH
Confidence 999985 99999999999999985
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=167.21 Aligned_cols=230 Identities=23% Similarity=0.232 Sum_probs=146.3
Q ss_pred CccceeecC-----cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecC
Q 020636 59 IDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYK 133 (323)
Q Consensus 59 ~d~~t~i~g-----~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~ 133 (323)
++.++++.+ ..++.||+++||+++.+ ..+...+++.+++++|...++++.. .+.+++.... ....|+- ..
T Consensus 60 ~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~~--~~i~q~~-~~ 134 (392)
T cd02808 60 VDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGGG--DIIKQVA-SG 134 (392)
T ss_pred cccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhhh--heEEEec-CC
Confidence 344665554 35689999999998754 4456779999999999999999854 5566665332 2345541 11
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCC-CchHHHHhhccCCCC-cccc--ccccccccCCCccccchhhHHHHhhccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP-FLTL--KNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~-g~r~~d~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
.-......++. ++.+-+.+.--.. | .+-.+|. |++. ......+.+ .+.+++..+
T Consensus 135 ~fGv~~~~~~~-----~~~ieik~~QGAkpg-------~gg~l~~~Kv~~eiA~~r~~~~g----------~~~isp~~~ 192 (392)
T cd02808 135 RFGVRPEYLNK-----ADAIEIKIGQGAKPG-------EGGHLPGEKVTEEIAKIRGIPPG----------VDLISPPPH 192 (392)
T ss_pred CCccCHHHccc-----CcEEEEEeccCCCCC-------CCCccccccCCHHHHHHhCCCCC----------ccccCCCCC
Confidence 11111112211 4455554431110 0 0000110 1110 000001000 012233344
Q ss_pred CccC-----HHHHHHHHHhcC-CCEEEeccC--CHHHHHHHHHcC-CCEEEEcCCCCCC--------CCCCcchHHHHHH
Q 020636 210 RSLS-----WKDVKWLQTITK-LPILVKGVL--TAEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEE 272 (323)
Q Consensus 210 ~~~~-----~~~i~~i~~~~~-~pv~vK~i~--~~e~a~~~~~~G-ad~i~vs~~gg~~--------~~~~~~~~~~l~~ 272 (323)
+++. .+.|+++|+.++ .||++|++. +.+++..+.+.| +|+|+|+|++|.. .+.+.|+...|++
T Consensus 193 ~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 193 HDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 4543 567999999998 999999885 477766666655 9999999996543 2346788888998
Q ss_pred HHHHh-----cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 273 VVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 273 i~~~~-----~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+.+.+ +.++|||++|||+++.|++|+|++|||+|.+||+|+..
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~a 320 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIA 320 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHh
Confidence 88765 24699999999999999999999999999999999854
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=161.28 Aligned_cols=211 Identities=23% Similarity=0.265 Sum_probs=149.8
Q ss_pred ceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCCC--------------------------C-
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------S- 113 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~~--------------------------~- 113 (323)
+|+++|.+|++||++|+ |.. . ....+.+.+...|..+++. +.+.. .
T Consensus 1 ~~~~~G~~~~nP~~~aa-g~~----~-~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILAS-GTF----G-FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECC-CCC----C-CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 57899999999999994 221 1 2224555555444666644 33211 1
Q ss_pred ---HHHHHhc---CCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccccccc
Q 020636 114 ---VEEVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (323)
Q Consensus 114 ---~eei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~ 187 (323)
++++.+. ...+..+||.. .+.+...+.+++++++|++++.||+.||....| +
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~--------------------g- 132 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGG--------------------G- 132 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC--------------------c-
Confidence 1223222 23578999974 577888889999999999999999999973111 0
Q ss_pred ccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC----HHHHHHHHHcCCCEEEEcCCC-CCCCC-
Q 020636 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHG-ARQLD- 261 (323)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~----~e~a~~~~~~Gad~i~vs~~g-g~~~~- 261 (323)
.. + ..++++..+.++++++.++.||.+|...+ .+.++.+.++|+|+|+++|+. +...+
T Consensus 133 ----------~~---~---~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 133 ----------MA---F---GTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred ----------cc---c---cCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 00 0 12455667889999999899999996533 244788999999999998742 11110
Q ss_pred -----------C---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 262 -----------Y---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 262 -----------~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+ + +..++.+.++++.+ ++|||++|||.+++|+.++|++|||+|++||+++..|++
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~ 269 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEA 269 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHH
Confidence 1 1 12457888888877 799999999999999999999999999999999998875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-18 Score=161.04 Aligned_cols=209 Identities=19% Similarity=0.200 Sum_probs=142.7
Q ss_pred ccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCCC--------------------------
Q 020636 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~~-------------------------- 112 (323)
|++|+++|.+|++||++|.-+.+ ......+.+..+|.++++. |.+..
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLS------RNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCC------CCHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 67899999999999999853332 1223444477777666543 32110
Q ss_pred --------C----HHHHHhc---CCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCC
Q 020636 113 --------S----VEEVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (323)
Q Consensus 113 --------~----~eei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~ 177 (323)
. ++++.+. .+.+.++|+.. .+.+...+.+++++++|++++.+|+.||... |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYALPTD------------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-
Confidence 1 1223221 13467888853 5667777888888888999999998874310 0
Q ss_pred ccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC----HHHHHHHHHcCCCEEEEc
Q 020636 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~----~e~a~~~~~~Gad~i~vs 253 (323)
+. .+.. .++...+.++++++.+++||++|.... .+.++.+.++|+|+|+++
T Consensus 141 ~~----------------~g~~---------~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 141 DI----------------SGAE---------VEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred Cc----------------ccch---------HHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 00 0000 012345779999999999999997633 456888999999999999
Q ss_pred CCCCC-CCC---------C---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 254 NHGAR-QLD---------Y---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 254 ~~gg~-~~~---------~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
|+... ..| + + +-+++.+.++.+.+ ++|||++|||+|++|+.++|.+||++|++||+++..
T Consensus 196 nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~ 272 (325)
T cd04739 196 NRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH 272 (325)
T ss_pred cCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc
Confidence 97521 111 1 1 12356667776666 799999999999999999999999999999998773
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=156.79 Aligned_cols=205 Identities=20% Similarity=0.216 Sum_probs=152.3
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCC-C-----HH--HHHhcC--CCceeEEeeecCChHHHHHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-----VE--EVASTG--PGIRFFQLYVYKDRNVVAQLV 142 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~-~-----~e--ei~~~~--~~~~~~QLy~~~d~~~~~~~~ 142 (323)
|+++|||-.. ++++++..+.++|.-.+.++|-.. + -. ...... +.+..+||. ..+++...+..
T Consensus 1 ~~~~aPm~~~------~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGV------TDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCC------cCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 6899999764 678999999999988888876321 1 11 111111 267899997 46788888899
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
++++++|++++.|++.||..-.|. .+ .|..+ ..++.+..+.++.+++
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~-----------------------~G~~l------~~~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GG-----------------------AGAAL------LKDPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CC-----------------------eeehh------cCCHHHHHHHHHHHHH
Confidence 999999999999999998631110 00 01111 1356667788999999
Q ss_pred hcCCCEEEeccCC-------HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 223 ITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 223 ~~~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
.++.|+.+|.... .+-++.+.+.|+|.|.+++....+....+..++.+..+++.+ ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 8888999995421 233677888999999996643322233456788888888866 7999999999999999
Q ss_pred HHHHHc-CCCEEEEccccccCcchh
Q 020636 296 FKALAL-GASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 296 ~kal~l-GAd~V~iG~~~~~~~~~~ 319 (323)
.+++.. |||+|++||+++.+|++=
T Consensus 199 ~~~l~~~gad~V~igr~~l~~P~~~ 223 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALGNPWLF 223 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHhCCHHH
Confidence 999998 899999999999999764
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=172.06 Aligned_cols=107 Identities=22% Similarity=0.344 Sum_probs=89.2
Q ss_pred CCccCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCC-----CcchHHHHHHHHHHhc
Q 020636 209 DRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY-----VPATIMALEEVVKATQ 278 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~-----~~~~~~~l~~i~~~~~ 278 (323)
+....|+.+++||+.++ .+|+++++.|.++|+.+.++|||+|.|++|.|. +... ..+++..++++.+..
T Consensus 272 ~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~- 350 (505)
T PLN02274 272 DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH- 350 (505)
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-
Confidence 33456899999999994 888889999999999999999999999987763 2211 123566677777665
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 279 GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 279 ~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
++|||++|||+++.|+.|||++||++||+|++|.++.+
T Consensus 351 -~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~E 388 (505)
T PLN02274 351 -GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTE 388 (505)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccccc
Confidence 79999999999999999999999999999999988653
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=170.66 Aligned_cols=105 Identities=28% Similarity=0.290 Sum_probs=91.1
Q ss_pred cCHHHHHHHHHhcCCCEEEe--ccCCHHHHHHHHHcCCCEEEEcCCCC-----C-CCCCCcchHHHHHHHHHHh------
Q 020636 212 LSWKDVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT------ 277 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK--~i~~~e~a~~~~~~Gad~i~vs~~gg-----~-~~~~~~~~~~~l~~i~~~~------ 277 (323)
...+.|+++++.++.++.++ .+.+.++|+.+.++|||+|.|++|+| | +.+.++|.+..+.++.+++
T Consensus 269 ~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~ 348 (502)
T PRK07107 269 WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEE 348 (502)
T ss_pred HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhh
Confidence 34678999999997545444 48999999999999999999999999 4 5667788999999988865
Q ss_pred -cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 278 -QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 278 -~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.++|||+||||+++.|++|||++|||+||+|++|.++.
T Consensus 349 ~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~ 388 (502)
T PRK07107 349 TGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFD 388 (502)
T ss_pred cCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccc
Confidence 224999999999999999999999999999999999865
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-17 Score=164.96 Aligned_cols=110 Identities=23% Similarity=0.314 Sum_probs=91.4
Q ss_pred cCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC------CCCCCcchHHHHHHHHHHhc-C
Q 020636 208 IDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-G 279 (323)
Q Consensus 208 ~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~------~~~~~~~~~~~l~~i~~~~~-~ 279 (323)
++....|+.|+++++.+ +.||+++.+.|.++++.+.++|||+|.++.+.|. ..+.+.|.+..+.++.+.+. .
T Consensus 264 G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~ 343 (495)
T PTZ00314 264 GNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER 343 (495)
T ss_pred CCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc
Confidence 34455688999999997 6899999999999999999999999999654331 12345677888777776653 2
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 280 RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
++|||++|||+++.|++||+++||++||+|++|.++.+
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEE 381 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccc
Confidence 69999999999999999999999999999999988653
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=156.15 Aligned_cols=211 Identities=24% Similarity=0.265 Sum_probs=151.0
Q ss_pred eeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCCC-----------------------------
Q 020636 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS----------------------------- 112 (323)
Q Consensus 63 t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~~----------------------------- 112 (323)
|+++|.+|++||++|.-... .+....+.+.++|..+++. |.+..
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999984331 2345677777888766643 32210
Q ss_pred ------CH----HHHHhc----CCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCc
Q 020636 113 ------SV----EEVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (323)
Q Consensus 113 ------~~----eei~~~----~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~ 178 (323)
.+ +++.+. ...+..+|+.. .+.+...+.++++++.|++++.+|+.||..... ++
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~-~~---------- 142 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGG-RQ---------- 142 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-cc----------
Confidence 11 223221 13567889864 577788888999999999999999999973210 00
Q ss_pred cccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc--CC----HHHHHHHHHcCCCEEEE
Q 020636 179 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LT----AEDARIAVQAGAAGIIV 252 (323)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i--~~----~e~a~~~~~~Gad~i~v 252 (323)
...+++...+.++++++.++.||++|.. .+ .+.++.+.++|+|+|++
T Consensus 143 ---------------------------~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 143 ---------------------------LGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ---------------------------cccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 0113445567899999988999999954 33 45578889999999999
Q ss_pred cCCCC-CC------------CCC---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 253 SNHGA-RQ------------LDY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 253 s~~gg-~~------------~~~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
+|+.. .. ..+ + +..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 87521 10 011 1 1246678888887754699999999999999999999999999999999
Q ss_pred ccC-cch
Q 020636 313 CQC-PLT 318 (323)
Q Consensus 313 ~~~-~~~ 318 (323)
+.. |++
T Consensus 276 ~~~GP~~ 282 (289)
T cd02810 276 MWDGPDV 282 (289)
T ss_pred HhcCccH
Confidence 987 754
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=164.02 Aligned_cols=108 Identities=28% Similarity=0.365 Sum_probs=91.3
Q ss_pred CccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC-----C-CCCcchHHHHHHHHHHhc-CCC
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----L-DYVPATIMALEEVVKATQ-GRI 281 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~-----~-~~~~~~~~~l~~i~~~~~-~~~ 281 (323)
....++.|+++++.+ ++||+++.+.|.++|+.+.++|||+|.|+.+.|.. . ..+.|.+.++.++.+.+. .++
T Consensus 249 ~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~v 328 (450)
T TIGR01302 249 SIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGI 328 (450)
T ss_pred HhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCC
Confidence 344577899999986 79999999999999999999999999998655421 1 245678888888876652 379
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
|||++|||+++.|+.|||++||++||+|++|.++.+
T Consensus 329 pviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e 364 (450)
T TIGR01302 329 PVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTE 364 (450)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCc
Confidence 999999999999999999999999999999998764
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=156.22 Aligned_cols=214 Identities=17% Similarity=0.110 Sum_probs=144.6
Q ss_pred eeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCC--------------------------CC--
Q 020636 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------SS-- 113 (323)
Q Consensus 63 t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~--------------------------~~-- 113 (323)
++++|.+|++||++|+-.. +.+....+.+.+.|.++++. |.+. ..
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~------~~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPW------CTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCC------CCCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 5789999999999997321 23334566666678777643 4321 11
Q ss_pred --HHHHHhc------CCCceeEEeeecCChHHHHHHHHHHHHc---CCcEEEEecCCCCCCchHHHHhhccCCCCccccc
Q 020636 114 --VEEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (323)
Q Consensus 114 --~eei~~~------~~~~~~~QLy~~~d~~~~~~~~~~a~~~---G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~ 182 (323)
++++.+. ...+...|+... .+...+.++++++. |++++.+|+.||..... .
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~-~--------------- 136 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK-P--------------- 136 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc-c---------------
Confidence 2333322 135788998743 67777777777765 69999999999973100 0
Q ss_pred cccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccC--CH----HHHHHHHHc--CCCEEEEcC
Q 020636 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--TA----EDARIAVQA--GAAGIIVSN 254 (323)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~--~~----e~a~~~~~~--Gad~i~vs~ 254 (323)
....+++...+.++++++.+++||++|... +. +.|+.+.+. |+|+|++.|
T Consensus 137 ----------------------~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 137 ----------------------PPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred ----------------------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 001245556778999999999999999763 22 234555677 999999865
Q ss_pred CCC---------CC-------CCCCcc-------hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 255 HGA---------RQ-------LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 255 ~gg---------~~-------~~~~~~-------~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.-+ +. ..++.+ .+..+.++++.++.++|||++|||.|++|+++++.+|||+||+||.
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 431 11 112222 3456677777775469999999999999999999999999999999
Q ss_pred ccc-Cc-chhhhc
Q 020636 312 PCQ-CP-LTEKIN 322 (323)
Q Consensus 312 ~~~-~~-~~~~~~ 322 (323)
++. .| .+++|+
T Consensus 275 ~~~~gp~~~~~i~ 287 (294)
T cd04741 275 LGKEGPKVFARIE 287 (294)
T ss_pred hhhcCchHHHHHH
Confidence 884 44 455543
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=158.62 Aligned_cols=209 Identities=18% Similarity=0.185 Sum_probs=141.8
Q ss_pred ccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCC----------------------------
Q 020636 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s---------------------------- 110 (323)
|++|+++|.+|++||++|.-... ..+| ..+.+.+.|.++++. |.+
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~----~~~~--~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLS----ESVD--NVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCC----CCHH--HHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 68999999999999998874332 1122 333466777665543 221
Q ss_pred -------CCCHHH----HH---hcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCC
Q 020636 111 -------TSSVEE----VA---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (323)
Q Consensus 111 -------~~~~ee----i~---~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~ 176 (323)
+..+++ +. +..+.+.+.|+.. .+.+...+.+++++++|++++.+|+.||.... + +
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~---~----~--- 144 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDP---D----I--- 144 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC---C----C---
Confidence 011222 21 1123567888864 56666677888888889999999988864200 0 0
Q ss_pred CccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC----HHHHHHHHHcCCCEEEE
Q 020636 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIV 252 (323)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~----~e~a~~~~~~Gad~i~v 252 (323)
.+.. .+...++.++++++.+++||++|.... .+.++.+.++|+|+|++
T Consensus 145 -------------------~g~~---------~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 145 -------------------SGAE---------VEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred -------------------cccc---------HHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 0000 011247889999999999999996532 35578889999999999
Q ss_pred cCCCCC-CCC---------C---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 253 SNHGAR-QLD---------Y---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 253 s~~gg~-~~~---------~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+|+... ..| + + +-.++.+.++.+.+ ++|||++|||+|++|+.++|.+||++|++||+++..
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRH 274 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhh
Confidence 887421 111 1 1 12345666666666 799999999999999999999999999999999874
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=156.73 Aligned_cols=244 Identities=18% Similarity=0.190 Sum_probs=159.5
Q ss_pred chHHHHHhHHhhcccccccccc-cCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CC
Q 020636 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW 109 (323)
Q Consensus 32 ~e~t~~~N~~~~~~i~l~pr~l-~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~ 109 (323)
-|.+++-....+.-+...|-.+ +...+.|++|+++|.+|++||++|. |. ..++ ...+.+.++|.++++. |.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~----~~~~--~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GF----DKNA--EAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CC----CCCH--HHHHHHHHCCCcEEEEecc
Confidence 4566777777777776666332 4567889999999999999999976 32 2223 3445545788766643 43
Q ss_pred CCC----------------------------C----HHHHHhcC--CCceeEEeeecCC------hHHHHHHHHHHHHcC
Q 020636 110 STS----------------------------S----VEEVASTG--PGIRFFQLYVYKD------RNVVAQLVRRAERAG 149 (323)
Q Consensus 110 s~~----------------------------~----~eei~~~~--~~~~~~QLy~~~d------~~~~~~~~~~a~~~G 149 (323)
+.. . ++++.+.. ..+.++|+..... .+...++++++.. .
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ 160 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-Y 160 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-h
Confidence 211 0 23333222 2567788754321 2333444444433 3
Q ss_pred CcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC----
Q 020636 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK---- 225 (323)
Q Consensus 150 ~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---- 225 (323)
++++.+|+.||.... . + ...+++...+.++++++.++
T Consensus 161 ad~ielN~scP~~~g--------~--------~-----------------------~~~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 161 ADYLVVNVSSPNTPG--------L--------R-----------------------DLQGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCEEEEECCCCCCCc--------c--------c-----------------------cccCHHHHHHHHHHHHHHHhhccc
Confidence 788888888886310 0 0 01134444567888988875
Q ss_pred -CCEEEeccC--C----HHHHHHHHHcCCCEEEEcCCCCCC-------------CCCC----cchHHHHHHHHHHhcCCC
Q 020636 226 -LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGARQ-------------LDYV----PATIMALEEVVKATQGRI 281 (323)
Q Consensus 226 -~pv~vK~i~--~----~e~a~~~~~~Gad~i~vs~~gg~~-------------~~~~----~~~~~~l~~i~~~~~~~~ 281 (323)
+||++|... + .+-++.+.++|+|+|+++|..... ...+ +.+++.+.++++.+++++
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 999999752 2 334678889999999998742100 0011 234678888888886679
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccC-cc-hhhhc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC-PL-TEKIN 322 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~-~~-~~~~~ 322 (323)
|||++|||+|++|+.+++.+|||+|++||+++.. |+ +++|+
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~ 324 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIK 324 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHH
Confidence 9999999999999999999999999999999753 54 44444
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=157.10 Aligned_cols=241 Identities=17% Similarity=0.162 Sum_probs=152.4
Q ss_pred hHHHHHhHHhhcccc---ccc---ccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceee
Q 020636 33 QWTLQENRNAFSRIL---FRP---RILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL 106 (323)
Q Consensus 33 e~t~~~N~~~~~~i~---l~p---r~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v 106 (323)
|.+++--..++..+. +.+ +.+ ...+.+++|+++|.+|++||++|. |.. .++ ...+.+.++|.++++
T Consensus 16 e~~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~Gl~l~nPi~~As-G~~----~~~--~~~~~~~~~G~Gavv 87 (344)
T PRK05286 16 ETAHELTIRALKRASRTPLLSLLRQRL-TYTDPRLPVTVMGLTFPNPVGLAA-GFD----KNG--EAIDALGALGFGFVE 87 (344)
T ss_pred HHHHHHHHHHHHHhccCCchhhhhhcc-CCCCCCCceEECCEECCCCCEECC-CCC----CCh--HHHHHHHHcCCCEEE
Confidence 455554455555444 221 212 345778999999999999999976 322 223 456668888887764
Q ss_pred c-CCCCC----------------------------C----HHHHHhc-CCCceeEEeeecC------ChHHHHHHHHHHH
Q 020636 107 S-SWSTS----------------------------S----VEEVAST-GPGIRFFQLYVYK------DRNVVAQLVRRAE 146 (323)
Q Consensus 107 s-~~s~~----------------------------~----~eei~~~-~~~~~~~QLy~~~------d~~~~~~~~~~a~ 146 (323)
. |.+.. . ++++.+. ..-+.++++.... ..+...+++++++
T Consensus 88 ~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~ 167 (344)
T PRK05286 88 VGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLY 167 (344)
T ss_pred eCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHH
Confidence 3 43211 0 1222221 1124566664321 2334444444443
Q ss_pred HcCCcEEEEecCCCCCC-chHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC
Q 020636 147 RAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK 225 (323)
Q Consensus 147 ~~G~~al~itvd~p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 225 (323)
+ +++++.+|+.||... .| ...+++...+.++++|+.++
T Consensus 168 ~-~ad~lelN~scP~~~g~~----------------------------------------~~~~~~~~~eiv~aVr~~~~ 206 (344)
T PRK05286 168 P-YADYFTVNISSPNTPGLR----------------------------------------DLQYGEALDELLAALKEAQA 206 (344)
T ss_pred h-hCCEEEEEccCCCCCCcc----------------------------------------cccCHHHHHHHHHHHHHHHh
Confidence 3 477777777777531 00 01133344577899999886
Q ss_pred -----CCEEEeccC--C----HHHHHHHHHcCCCEEEEcCCCCCC----------CCC---Cc----chHHHHHHHHHHh
Q 020636 226 -----LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGARQ----------LDY---VP----ATIMALEEVVKAT 277 (323)
Q Consensus 226 -----~pv~vK~i~--~----~e~a~~~~~~Gad~i~vs~~gg~~----------~~~---~~----~~~~~l~~i~~~~ 277 (323)
+||++|... + .+.|+.+.++|+|+|+++|.-... ..+ ++ ..++.+.++++.+
T Consensus 207 ~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~ 286 (344)
T PRK05286 207 ELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKEL 286 (344)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 999999763 2 344788889999999998853100 011 12 2566788888887
Q ss_pred cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC-c-chhhhc
Q 020636 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC-P-LTEKIN 322 (323)
Q Consensus 278 ~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~-~-~~~~~~ 322 (323)
++++|||++|||+|++|+.+++.+|||+|++||+++.. | ++++|+
T Consensus 287 ~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~ 333 (344)
T PRK05286 287 GGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIV 333 (344)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHH
Confidence 66799999999999999999999999999999999753 5 444443
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=151.17 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=137.2
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC----------------------CCHHHH----H--hcCCCc
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------------------SSVEEV----A--STGPGI 124 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~----------------------~~~eei----~--~~~~~~ 124 (323)
|+++|||++. ++.+++++..+++...+++.++. .+++-+ . +..+.+
T Consensus 1 ~~~lApMag~------td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p 74 (233)
T cd02911 1 PVALASMAGI------TDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVL 74 (233)
T ss_pred CceeeecCCC------cCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCe
Confidence 8999999885 45589985444444455543321 122222 1 112357
Q ss_pred eeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHH
Q 020636 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 125 ~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
..+|++ ..+++.+.+.++++++. ++.|.+|+.||+.- +. ..+.|+.+
T Consensus 75 ~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~---------------v~------------~~g~G~~L---- 121 (233)
T cd02911 75 VGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQPE---------------MV------------EAGAGEAL---- 121 (233)
T ss_pred EEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcHH---------------Hh------------cCCcchHH----
Confidence 899998 57888888888888774 59999999999731 00 00112222
Q ss_pred hhccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC
Q 020636 205 AGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 279 (323)
Q Consensus 205 ~~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 279 (323)
..+|+...+.++.+++ .+.||.+|.. .+.+-++.+.++|+|+|.+++.. .+....++.+++++ +
T Consensus 122 --l~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~----~g~~ad~~~I~~i~--~-- 190 (233)
T cd02911 122 --LKDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD----PGNHADLKKIRDIS--T-- 190 (233)
T ss_pred --cCCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCC----CCCCCcHHHHHHhc--C--
Confidence 1366677788999987 5999999964 34566888999999998775321 12345677777775 4
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 280 RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
++|||++|||.+++|+.+++..|||+||+||+ +.||.
T Consensus 191 ~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~~p~~ 227 (233)
T cd02911 191 ELFIIGNNSVTTIESAKEMFSYGADMVSVARA--SLPEN 227 (233)
T ss_pred CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--CCchH
Confidence 79999999999999999999999999999999 77764
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-17 Score=163.53 Aligned_cols=104 Identities=31% Similarity=0.398 Sum_probs=89.7
Q ss_pred CHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcC-----CCCCCCC-CCcchHHHHHHHHHHhc-CCCeEE
Q 020636 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQLD-YVPATIMALEEVVKATQ-GRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~-----~gg~~~~-~~~~~~~~l~~i~~~~~-~~~pvi 284 (323)
.++.++++++.+ +.||+++.+.|.++|+.+.++|+|+|.++. |+++..+ .+.|+++++.++.+.+. .++|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 466799999998 799999999999999999999999999843 3334443 35788999999987663 369999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
++|||+++.|++|||++|||+||+|++|.++.
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~ 367 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTE 367 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccc
Confidence 99999999999999999999999999998864
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=157.20 Aligned_cols=220 Identities=20% Similarity=0.255 Sum_probs=149.4
Q ss_pred CCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecC-CCC-----------------------
Q 020636 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WST----------------------- 111 (323)
Q Consensus 56 ~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~-~s~----------------------- 111 (323)
.+..|++|+|+|.+|++||++|.-.. .......+.+.++|.+.++.- .+.
T Consensus 6 ~~~~dLst~~~Gl~l~NP~i~ASgp~------t~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~ 79 (385)
T PLN02495 6 ASEPDLSVTVNGLKMPNPFVIGSGPP------GTNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSA 79 (385)
T ss_pred cCCCcceEEECCEEcCCCcEeCCccC------CCCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCccccccc
Confidence 35678999999999999999997322 123345555566687776631 110
Q ss_pred --C-------------CH----HHHHh---cCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHH
Q 020636 112 --S-------------SV----EEVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (323)
Q Consensus 112 --~-------------~~----eei~~---~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d 168 (323)
. ++ +++.+ ..+ .+.+..+....+.+...+++++++++|++++.+|+.||... .+++
T Consensus 80 ~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~-~~r~ 158 (385)
T PLN02495 80 KGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM-PERK 158 (385)
T ss_pred ccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CcCc
Confidence 0 12 22222 223 36777775446788888899999999999999999998731 0000
Q ss_pred HhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH----HHHHHHHH
Q 020636 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQ 244 (323)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~----e~a~~~~~ 244 (323)
. +.. ...+++...+.++++++.+++||++|...+. +.|+.+.+
T Consensus 159 ~---------------------------g~~------~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~ 205 (385)
T PLN02495 159 M---------------------------GAA------VGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALK 205 (385)
T ss_pred c---------------------------chh------hccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHH
Confidence 0 000 0124555667789999988999999977433 44778899
Q ss_pred cCCCEEEEcCCCCC--CC----------------CCC-------cchHHHHHHHHHHhc----CCCeEEEecCCCCHHHH
Q 020636 245 AGAAGIIVSNHGAR--QL----------------DYV-------PATIMALEEVVKATQ----GRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 245 ~Gad~i~vs~~gg~--~~----------------~~~-------~~~~~~l~~i~~~~~----~~~pvia~GGI~~~~di 295 (323)
.|+|+|++.|.-.. .. .++ +.++..+.++.+.+. .++|||+.|||.+++|+
T Consensus 206 ~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da 285 (385)
T PLN02495 206 SGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDA 285 (385)
T ss_pred hCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHH
Confidence 99999999885321 01 011 112334455555552 25899999999999999
Q ss_pred HHHHHcCCCEEEEccccccC
Q 020636 296 FKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 296 ~kal~lGAd~V~iG~~~~~~ 315 (323)
++.|.+||++|++||+++..
T Consensus 286 ~e~i~aGAs~VQv~Ta~~~~ 305 (385)
T PLN02495 286 AEFILLGADTVQVCTGVMMH 305 (385)
T ss_pred HHHHHhCCCceeEeeeeeec
Confidence 99999999999999998765
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=160.29 Aligned_cols=215 Identities=22% Similarity=0.260 Sum_probs=146.7
Q ss_pred CccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCC---------------------------
Q 020636 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--------------------------- 110 (323)
Q Consensus 59 ~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s--------------------------- 110 (323)
.|++|+++|.+|++||++|+=.. +.. ...+.+.. ++|.++++. |.+
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag~~---~~~--~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAPP---TNK--YYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCcCC---CCC--HHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 37899999999999999996211 111 22333333 346554321 110
Q ss_pred ----CCCHHH----H---HhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC-CchHHHHhhccCCCC
Q 020636 111 ----TSSVEE----V---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP 177 (323)
Q Consensus 111 ----~~~~ee----i---~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~-g~r~~d~~~~~~~~~ 177 (323)
...+++ + ....+ .+.++|+....+.+...+.++.+++.|+++|.+|+.||.. +.| + +
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~--~----~---- 145 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER--G----M---- 145 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc--C----C----
Confidence 001221 1 11222 5578999754377888889999999999999999999972 110 0 0
Q ss_pred ccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC----HHHHHHHHHcCCCEEEEc
Q 020636 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~----~e~a~~~~~~Gad~i~vs 253 (323)
+..+ ..+++...+.++++++.+++||++|...+ .+.|+.+.++|+|+|++.
T Consensus 146 -------------------g~~~------~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 146 -------------------GSAV------GQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred -------------------cccc------cCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEe
Confidence 0000 12555667789999998899999997643 355788899999999976
Q ss_pred CCCCC---------------------CCCCCcc----hHHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 254 NHGAR---------------------QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 254 ~~gg~---------------------~~~~~~~----~~~~l~~i~~~~~-~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
|.-.. +...+++ +++.+.++++.++ .++|||++|||.|++|+.++|.+|||+||
T Consensus 201 Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 201 NTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred cccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 54211 0111222 4788888887763 27999999999999999999999999999
Q ss_pred Ecccccc
Q 020636 308 VSIMPCQ 314 (323)
Q Consensus 308 iG~~~~~ 314 (323)
|||+++.
T Consensus 281 i~ta~~~ 287 (420)
T PRK08318 281 VCTAAMQ 287 (420)
T ss_pred eeeeecc
Confidence 9999877
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-17 Score=160.54 Aligned_cols=110 Identities=26% Similarity=0.234 Sum_probs=90.9
Q ss_pred cCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC------CCCcchHHHHHHHHHHhcC-
Q 020636 208 IDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKATQG- 279 (323)
Q Consensus 208 ~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~------~~~~~~~~~l~~i~~~~~~- 279 (323)
+++....+.+++|++.+ +.||++..+.|.+.++.+.++|||+|.|+..+|+.. ..+.+.+..+.++.+....
T Consensus 248 g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~ 327 (475)
T TIGR01303 248 GHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL 327 (475)
T ss_pred CCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc
Confidence 34445567899999987 689999779999999999999999999988777532 2356677777776554422
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 280 RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.+|||++|||+++.|++|||++||++||+|+.|.++.+
T Consensus 328 ~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~e 365 (475)
T TIGR01303 328 GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYE 365 (475)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhccccc
Confidence 69999999999999999999999999999999998764
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=153.83 Aligned_cols=92 Identities=33% Similarity=0.419 Sum_probs=74.1
Q ss_pred cCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCC-C----------CCCCC-------cchHHHHHHHHHHhcC
Q 020636 224 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGA-R----------QLDYV-------PATIMALEEVVKATQG 279 (323)
Q Consensus 224 ~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg-~----------~~~~~-------~~~~~~l~~i~~~~~~ 279 (323)
.++||++|.. .+.++ |+.+.+.|+|+|+++|..- + +..++ +.+++.+.++.+.+++
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999985 45445 7889999999999998531 1 11121 2357888999888877
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 280 RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
++|||++|||.|++|+++.+.+||++|++||+|+..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 899999999999999999999999999999998764
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=148.41 Aligned_cols=184 Identities=21% Similarity=0.210 Sum_probs=132.1
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHH-------HhcCCCceeEEeeecCChH
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei-------~~~~~~~~~~QLy~~~d~~ 136 (323)
+++|. +.||+.+||++. .++ .++.++.++|...+++... .+.|++ ++....|+.+.+....+ .
T Consensus 6 ~~lgi--~~Pii~apM~~~--s~~----~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~-~ 75 (307)
T TIGR03151 6 DLLGI--EYPIFQGGMAWV--ATG----SLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLSP-F 75 (307)
T ss_pred HHhCC--CCCEEcCCCCCC--CCH----HHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCCC-C
Confidence 34554 489999999873 444 7999999999999988532 233333 22233566666543221 1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 137 ~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
..+.++.+.+.|++.+.++.+ .| .+.
T Consensus 76 -~~~~~~~~~~~~v~~v~~~~g--------------------------------------------------~p---~~~ 101 (307)
T TIGR03151 76 -VDELVDLVIEEKVPVVTTGAG--------------------------------------------------NP---GKY 101 (307)
T ss_pred -HHHHHHHHHhCCCCEEEEcCC--------------------------------------------------Cc---HHH
Confidence 234556666777776654211 11 235
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
++++++. +.+++ -.+.+.++++.+.++|+|.|++.++ ||+ .+..+++.+++++.+.+ ++|||++|||.++.|
T Consensus 102 i~~lk~~-g~~v~-~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh--~g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~ 175 (307)
T TIGR03151 102 IPRLKEN-GVKVI-PVVASVALAKRMEKAGADAVIAEGMESGGH--IGELTTMALVPQVVDAV--SIPVIAAGGIADGRG 175 (307)
T ss_pred HHHHHHc-CCEEE-EEcCCHHHHHHHHHcCCCEEEEECcccCCC--CCCCcHHHHHHHHHHHh--CCCEEEECCCCCHHH
Confidence 6677665 55554 4678999999999999999999876 333 23446789999999888 799999999999999
Q ss_pred HHHHHHcCCCEEEEccccccCcc
Q 020636 295 VFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+.+++++||++|++||.|+.+++
T Consensus 176 ~~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 176 MAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred HHHHHHcCCCEeecchHHhcccc
Confidence 99999999999999999988654
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-16 Score=145.68 Aligned_cols=113 Identities=29% Similarity=0.402 Sum_probs=89.9
Q ss_pred CCccCHHHHHHHHHhcCCCEEEeccCCHHH----HHHHHHcCCCEEEEcCCCCCCC--------------CCC-------
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGVLTAED----ARIAVQAGAAGIIVSNHGARQL--------------DYV------- 263 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~----a~~~~~~Gad~i~vs~~gg~~~--------------~~~------- 263 (323)
+++..-+.++++++..++||++|...+.++ |+.+.++|+|+|++.|...... .++
T Consensus 145 ~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ik 224 (310)
T COG0167 145 DPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLK 224 (310)
T ss_pred CHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccch
Confidence 555556678899999999999998765444 7888999999999998533111 111
Q ss_pred cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC-c-chhhh
Q 020636 264 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC-P-LTEKI 321 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~-~-~~~~~ 321 (323)
+-++..++++.+.+..++|||+.|||.|++|+++.+.+||++|++||+++.. | .+++|
T Consensus 225 p~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I 284 (310)
T COG0167 225 PIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEI 284 (310)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHH
Confidence 3357788999988866899999999999999999999999999999999875 4 34444
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-16 Score=148.70 Aligned_cols=203 Identities=23% Similarity=0.251 Sum_probs=115.9
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH-------HHhcCCCceeEEeeecCChH
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYKDRN 136 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee-------i~~~~~~~~~~QLy~~~d~~ 136 (323)
+++|. +.||+.+||++ +.+| .|+-+..++|...+++.. ..+.++ +++..+.++.+.+.......
T Consensus 6 ~~lgi--~~PIiqapM~~--is~~----~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~ 76 (330)
T PF03060_consen 6 ELLGI--KYPIIQAPMGG--ISTP----ELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDP 76 (330)
T ss_dssp HHHT---SSSEEE---TT--TSSH----HHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTH
T ss_pred HHhCC--CcCEEcCCCCC--CChH----HHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCccc
Confidence 34554 58999999987 3555 799999999999999954 333333 33334467777776544332
Q ss_pred HHH----------HHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhh
Q 020636 137 VVA----------QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (323)
Q Consensus 137 ~~~----------~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
... ..++...+.+.. . +..+..-+. .++.. ....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~--~~~~~---------------------v~~~ 120 (330)
T PF03060_consen 77 ADEEDAWPKELGNAVLELCIEEGVP---------F----EEQLDVALE--AKPDV---------------------VSFG 120 (330)
T ss_dssp HHH-HHHHHHTHHHHHHHHHHTT-S---------H----HHHHHHHHH--S--SE---------------------EEEE
T ss_pred chhhhhhhhhhHHHHHHHHHHhCcc---------c----ccccccccc--cceEE---------------------EEee
Confidence 222 011112222322 0 000000000 00000 0000
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
.+.| ..+.++.+++. ++.++ -.+.++++|+.+.+.|+|+|++.++ ||+......+.+.+++++.+.+ ++|||
T Consensus 121 ~G~p--~~~~i~~l~~~-gi~v~-~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~--~iPVi 194 (330)
T PF03060_consen 121 FGLP--PPEVIERLHAA-GIKVI-PQVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV--DIPVI 194 (330)
T ss_dssp SSSC---HHHHHHHHHT-T-EEE-EEESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH---SS-EE
T ss_pred cccc--hHHHHHHHHHc-CCccc-cccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhc--CCcEE
Confidence 1111 13456666664 55444 4578999999999999999999875 5554311125788999999988 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+.|||.++.++..+|++||++|++||+|+.+++
T Consensus 195 aAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 195 AAGGIADGRGIAAALALGADGVQMGTRFLATEE 227 (330)
T ss_dssp EESS--SHHHHHHHHHCT-SEEEESHHHHTSTT
T ss_pred EecCcCCHHHHHHHHHcCCCEeecCCeEEeccc
Confidence 999999999999999999999999999998754
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=146.95 Aligned_cols=211 Identities=21% Similarity=0.195 Sum_probs=158.4
Q ss_pred cCcccccce-EECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-CC-H--HHHH----hcC--CCceeEEeeecCC
Q 020636 66 LGFKISMPI-MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-SS-V--EEVA----STG--PGIRFFQLYVYKD 134 (323)
Q Consensus 66 ~g~~~~~Pi-~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~-~~-~--eei~----~~~--~~~~~~QLy~~~d 134 (323)
|-.+...|. ++|||-.. .|+++++.+++.|.-.+.+.|-. .+ + |..+ ... +.|.++|+- ..|
T Consensus 12 f~~~~~~~~ri~APMvd~------S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~nd 84 (358)
T KOG2335|consen 12 FWSKQGRPKRIVAPMVDY------SELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GND 84 (358)
T ss_pred hhhhcCCcccccCCcccc------cHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CCC
Confidence 333444443 69998543 68899999999999888887621 00 0 1111 111 268999986 589
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCH
Q 020636 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (323)
Q Consensus 135 ~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
++.+.+.++.++..+ ++|.||++||.. .-.+.+| |+.+ +.++++.-
T Consensus 85 p~~ll~Aa~lv~~y~-D~idlNcGCPq~----~a~~g~y-----------------------Ga~L------~~~~eLv~ 130 (358)
T KOG2335|consen 85 PENLLKAARLVQPYC-DGIDLNCGCPQK----VAKRGGY-----------------------GAFL------MDNPELVG 130 (358)
T ss_pred HHHHHHHHHHhhhhc-CcccccCCCCHH----HHhcCCc-----------------------ccee------ccCHHHHH
Confidence 998888888888876 999999999952 1112222 1111 23566777
Q ss_pred HHHHHHHHhcCCCEEEecc------CCHHHHHHHHHcCCCEEEEcCCCCCCC--CCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 215 KDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i------~~~e~a~~~~~~Gad~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
+.++.+++.++.||.+|.. .|.+.++.+.++|++.+.|+++...+. ..++..++.+..+++.+++ +|||++
T Consensus 131 e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaN 209 (358)
T KOG2335|consen 131 EMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIAN 209 (358)
T ss_pred HHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEee
Confidence 7899999999999999964 467789999999999999955433222 2567789999999999963 999999
Q ss_pred cCCCCHHHHHHHHH-cCCCEEEEccccccCcch
Q 020636 287 GGVRRGTDVFKALA-LGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 287 GGI~~~~di~kal~-lGAd~V~iG~~~~~~~~~ 318 (323)
|+|.+..|+..++. .|||+||.|+.++.+|+.
T Consensus 210 GnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~ 242 (358)
T KOG2335|consen 210 GNILSLEDVERCLKYTGADGVMSARGLLYNPAL 242 (358)
T ss_pred CCcCcHHHHHHHHHHhCCceEEecchhhcCchh
Confidence 99999999999999 999999999999999975
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=151.23 Aligned_cols=107 Identities=27% Similarity=0.293 Sum_probs=89.3
Q ss_pred ccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC----C--CCCcchHHHHHHHHHHhcC-CCe
Q 020636 211 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----L--DYVPATIMALEEVVKATQG-RIP 282 (323)
Q Consensus 211 ~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~----~--~~~~~~~~~l~~i~~~~~~-~~p 282 (323)
...++.|++||+.+ +.+|+...+.|.+.|+.+.++|||+|.|.-..|.- . ..+.|.+.++.++.+.... ++|
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~ 332 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAH 332 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCc
Confidence 34577899999998 58888889999999999999999999885444321 1 1245788889888875532 699
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 283 VFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 283 via~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
||++|||+++.|+.|+|++||++||+|++|+++.+
T Consensus 333 via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~E 367 (479)
T PRK07807 333 VWADGGVRHPRDVALALAAGASNVMIGSWFAGTYE 367 (479)
T ss_pred EEecCCCCCHHHHHHHHHcCCCeeeccHhhccCcc
Confidence 99999999999999999999999999999999864
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=143.20 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=83.0
Q ss_pred CccCHHHHHHHHHhcC-------CCEEEeccC--C----HHHHHHHHHcCCCEEEEcCCCCC----------CCCCC---
Q 020636 210 RSLSWKDVKWLQTITK-------LPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGAR----------QLDYV--- 263 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~-------~pv~vK~i~--~----~e~a~~~~~~Gad~i~vs~~gg~----------~~~~~--- 263 (323)
++...+.++++++.++ +||++|... + .+.|+.+.++|+|+|++.|.-.. ...++
T Consensus 188 ~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG 267 (335)
T TIGR01036 188 KAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSG 267 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccC
Confidence 4444566788877765 999999763 2 34477889999999999885310 00111
Q ss_pred ----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC-cc-hhhhc
Q 020636 264 ----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC-PL-TEKIN 322 (323)
Q Consensus 264 ----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~-~~-~~~~~ 322 (323)
+-.+..+.++.+.+++++|||+.|||.+++|+.+++.+||++|++||+++.. |. .++|+
T Consensus 268 ~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 268 KPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHH
Confidence 2245667777777766799999999999999999999999999999998663 54 44443
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=143.35 Aligned_cols=218 Identities=16% Similarity=0.110 Sum_probs=143.0
Q ss_pred ccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCC--------------------------C
Q 020636 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------S 112 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~--------------------------~ 112 (323)
|++|+++|.+|++||++|.=... ......+.+.++|.++++. |.+. .
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 67899999999999999972221 1223444577888777643 4321 1
Q ss_pred C----HHHHHhc---C-CCceeEEeeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCCchHHHHhhccCCCCcccccc
Q 020636 113 S----VEEVAST---G-PGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (323)
Q Consensus 113 ~----~eei~~~---~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G-~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~ 183 (323)
. ++++.+. . ..+.+.++. ..+.+...+.+++++++| ++++.+|+-||.... . +
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-------------~---~- 136 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPG-------------K---P- 136 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-------------c---c-
Confidence 1 2223221 1 145667775 356677778888888888 899999999986210 0 0
Q ss_pred ccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC---HHHHHHHH---HcCCCEEEEcCCC-
Q 020636 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT---AEDARIAV---QAGAAGIIVSNHG- 256 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~---~e~a~~~~---~~Gad~i~vs~~g- 256 (323)
. ...|++...+.++++++.+++||++|.... .+.++.+. +.|+++|...|.-
T Consensus 137 -------------------~--~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 137 -------------------Q--IAYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred -------------------c--cccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 0 012344456778999999999999997632 23343333 5567777665531
Q ss_pred ---------CCC-C-----CC---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 257 ---------ARQ-L-----DY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 257 ---------g~~-~-----~~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
++. + .+ + +..+..+.++.+.++.++|||+.|||.|++|+++++.+||++||+|++++.
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 110 0 01 1 234567777777776679999999999999999999999999999999875
Q ss_pred --Ccchhhhc
Q 020636 315 --CPLTEKIN 322 (323)
Q Consensus 315 --~~~~~~~~ 322 (323)
...+++|+
T Consensus 276 ~gp~~~~~i~ 285 (310)
T PRK02506 276 EGPAVFERLT 285 (310)
T ss_pred hChHHHHHHH
Confidence 33355543
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-16 Score=144.63 Aligned_cols=112 Identities=25% Similarity=0.303 Sum_probs=86.4
Q ss_pred hccCCccCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----C--CCCCcchHHHHHHHHHHhc
Q 020636 206 GQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQ 278 (323)
Q Consensus 206 ~~~~~~~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~--~~~~~~~~~~l~~i~~~~~ 278 (323)
++++..+..+.|+|+++.++ +.|+...+.|.+.|+.++++|||++.|.-..|. | +.-+.|...++.++.+...
T Consensus 272 SqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~ 351 (503)
T KOG2550|consen 272 SQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFAN 351 (503)
T ss_pred CCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHH
Confidence 45667778899999999985 567777789999999999999999999654442 1 1223344444444444332
Q ss_pred -CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 279 -GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 279 -~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
-.+|||+||||++..+++|||.+||+.||+|..|.++.+
T Consensus 352 q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTE 391 (503)
T KOG2550|consen 352 QFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTE 391 (503)
T ss_pred hcCCceeecCCcCccchhHhhhhcCchhheecceeeeeec
Confidence 279999999999999999999999999999999988643
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=139.05 Aligned_cols=222 Identities=24% Similarity=0.282 Sum_probs=122.2
Q ss_pred cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHH
Q 020636 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (323)
Q Consensus 68 ~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~ 147 (323)
.+++.||+++.|+++.| .++.-.++|++++..|+..+.++.. .+.++... .....++|+- ........+.++
T Consensus 62 ~~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~-~~~~~I~Q~~-sg~fGv~~~~l~---- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEGG-ELPEERKA-AKDLRIKQIA-SGRFGVRPEYLK---- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHHC----
T ss_pred hhheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCCC-CCHHHhcc-cCCceEEEcC-CCCCCCCHHHhc----
Confidence 35789999999999865 5667889999999999999999854 33343322 2222388963 334444444443
Q ss_pred cCCcEEEEecCCCCCCchHHHHhhccCCC-Ccccc--ccccccccCCCccccchhhHHHHhhccCCcc-C----HHHHHH
Q 020636 148 AGFKAIALTVDTPRLGRREADIKNRFTLP-PFLTL--KNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-S----WKDVKW 219 (323)
Q Consensus 148 ~G~~al~itvd~p~~g~r~~d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~~ 219 (323)
.+++|-|.+.--... - .|-.+| .|++. +.+.+.+.+. ..+++...+++ + .+.|++
T Consensus 134 -~a~~iEIKigQGAKp---G---~GG~Lp~~KV~~~ia~~R~~~~g~----------~~iSP~~h~di~s~edl~~~I~~ 196 (368)
T PF01645_consen 134 -QADMIEIKIGQGAKP---G---EGGHLPGEKVTEEIARIRGVPPGV----------DLISPPPHHDIYSIEDLAQLIEE 196 (368)
T ss_dssp -C-SEEEEE---TTST---T---T--EE-GGG--HHHHHHHTS-TT------------EE--SS-TT-SSHHHHHHHHHH
T ss_pred -CCCeEEEEEecCccc---c---CcceechhhchHHHHHHhCCCCCC----------ccccCCCCCCcCCHHHHHHHHHH
Confidence 356666655432110 0 000011 11110 1111111110 01112222332 2 235888
Q ss_pred HHHhc-CCCEEEecc--CCHHHHHH-HHHcCCCEEEEcCCCC-CC-------CCCCcchHHHHHHHHHHh-----cCCCe
Q 020636 220 LQTIT-KLPILVKGV--LTAEDARI-AVQAGAAGIIVSNHGA-RQ-------LDYVPATIMALEEVVKAT-----QGRIP 282 (323)
Q Consensus 220 i~~~~-~~pv~vK~i--~~~e~a~~-~~~~Gad~i~vs~~gg-~~-------~~~~~~~~~~l~~i~~~~-----~~~~p 282 (323)
+|+.. +.||.+|.+ ...++... +.++|+|.|++++++| +. -+.+.|....|.++.+.+ ++++.
T Consensus 197 Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~ 276 (368)
T PF01645_consen 197 LRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVS 276 (368)
T ss_dssp HHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSE
T ss_pred HHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceE
Confidence 89888 799999976 33444444 8899999999998754 31 134566677788877765 45799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 283 VFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 283 via~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
|+++||++++.|++|+++||||+|.+||+++.
T Consensus 277 Li~sGgl~t~~dv~kalaLGAD~v~igt~~li 308 (368)
T PF01645_consen 277 LIASGGLRTGDDVAKALALGADAVYIGTAALI 308 (368)
T ss_dssp EEEESS--SHHHHHHHHHCT-SEEE-SHHHHH
T ss_pred EEEeCCccCHHHHHHHHhcCCCeeEecchhhh
Confidence 99999999999999999999999999998754
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=130.16 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=116.2
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
+.+..+|+. ..+++...+.++.+++ +++.+.||+.||+. ++. ..+.|+.+
T Consensus 67 ~~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~---------------~v~------------~~g~G~~L- 116 (231)
T TIGR00736 67 RALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP---------------EIT------------EIGIGQEL- 116 (231)
T ss_pred cCCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH---------------HHc------------CCCCchhh-
Confidence 357899996 4688888888888766 79999999999983 000 00112211
Q ss_pred HHHhhccCCccCHHHHHHHHHhcCCCEEEeccC------CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~------~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (323)
..||+...+.++.+++ .+.||.+|... +.+.++.+.++|+|+|.|. .+.. ......++.++++++
T Consensus 117 -----l~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd--~~~~-g~~~a~~~~I~~i~~ 187 (231)
T TIGR00736 117 -----LKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD--AMYP-GKPYADMDLLKILSE 187 (231)
T ss_pred -----cCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe--eCCC-CCchhhHHHHHHHHH
Confidence 1366666778888884 58999999652 3466899999999999994 2221 012267899999999
Q ss_pred HhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 276 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 276 ~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++ ++|||++|||.|.+|+.+++..|||+||+||+++..
T Consensus 188 ~~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 188 EFN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred hcC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 873 399999999999999999999999999999988754
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-15 Score=138.43 Aligned_cols=111 Identities=26% Similarity=0.276 Sum_probs=76.9
Q ss_pred cCHHHHHHHHHhcCCCEEEeccC---CHH---HHHHHHHcCCCEEEEcCCCCC----------CCC----C---C----c
Q 020636 212 LSWKDVKWLQTITKLPILVKGVL---TAE---DARIAVQAGAAGIIVSNHGAR----------QLD----Y---V----P 264 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~---~~e---~a~~~~~~Gad~i~vs~~gg~----------~~~----~---~----~ 264 (323)
...+.++++++..++|+++|... ..+ .+..+.+.|+|+|++.|.-+. ... + + +
T Consensus 149 ~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p 228 (295)
T PF01180_consen 149 LVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRP 228 (295)
T ss_dssp HHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHH
T ss_pred HHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhh
Confidence 34456778888889999999764 332 355556889999998774211 111 1 1 2
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc--cCcchhhhc
Q 020636 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC--QCPLTEKIN 322 (323)
Q Consensus 265 ~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~--~~~~~~~~~ 322 (323)
.++..+.++++.++.++|||+.|||.|++|+.++|.+||++|+++|.++ +....++|+
T Consensus 229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~ 288 (295)
T PF01180_consen 229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRIN 288 (295)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHH
T ss_pred HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHH
Confidence 3567788888888556999999999999999999999999999999883 344555554
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-13 Score=126.79 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=124.7
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHH-------Hhc-CCCceeEEeeecCChHHHHHHH
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------AST-GPGIRFFQLYVYKDRNVVAQLV 142 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei-------~~~-~~~~~~~QLy~~~d~~~~~~~~ 142 (323)
+.||+.+||++. .. ...++.+..++|...+++... .+.|++ ++. ...|+.+.|-.+.+.....+.+
T Consensus 2 ~yPIiqgpM~~v--s~---~~~LaaAVS~AGgLG~la~~~-~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRV--SD---VAEFAVAVAEGGGLPFIALAL-MRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCC--CC---cHHHHHHHHhCCccccCCCCC-CCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 579999999864 22 127999999999988887532 333332 221 2356666663322222334556
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
+.+.+.+++.+.++-+ +|. .++++++
T Consensus 76 ~vi~e~~v~~V~~~~G--------------------------------------------------~P~----~~~~lk~ 101 (320)
T cd04743 76 AVVRAIKPTFALIAGG--------------------------------------------------RPD----QARALEA 101 (320)
T ss_pred HHHHhcCCcEEEEcCC--------------------------------------------------ChH----HHHHHHH
Confidence 6666667665543311 121 1455555
Q ss_pred hcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhc--------CCCeEEEecCCCCH
Q 020636 223 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRG 292 (323)
Q Consensus 223 ~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~~pvia~GGI~~~ 292 (323)
.+++++ -.+.|++.|+++.++|+|+|++.++ ||+. +..+++.+++++.+.+. .++|||+.|||.++
T Consensus 102 -~Gi~v~-~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dg 177 (320)
T cd04743 102 -IGISTY-LHVPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDE 177 (320)
T ss_pred -CCCEEE-EEeCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCH
Confidence 355544 4468999999999999999999875 4543 34456666777665541 26999999999999
Q ss_pred HHHHHHHHcCC--------CEEEEccccccCcch
Q 020636 293 TDVFKALALGA--------SGIFVSIMPCQCPLT 318 (323)
Q Consensus 293 ~di~kal~lGA--------d~V~iG~~~~~~~~~ 318 (323)
..+..++++|| ++|++||+|+.+++-
T Consensus 178 r~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 178 RSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred HHHHHHHHcCCcccccccccEEEEccHHhcchhh
Confidence 99999999998 899999999987654
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=131.68 Aligned_cols=99 Identities=30% Similarity=0.412 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CCCCC--CCCcchHHHHHHHHHHhcCC-CeEEEecC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGG 288 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-~pvia~GG 288 (323)
.+.++.+++ .+..++ -.+.+...|+++.++|+|+|++.+. ||+.- +..++++.+++++++++ + +|||++||
T Consensus 117 ~~~i~~~~~-~g~~v~-~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGG 192 (336)
T COG2070 117 AEFVARLKA-AGIKVI-HSVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGG 192 (336)
T ss_pred HHHHHHHHH-cCCeEE-EEeCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecC
Confidence 456777766 455444 4467899999999999999999764 44432 33567789999999999 6 99999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
|.++.++..||++||++|++||+|+.+.
T Consensus 193 I~dg~~i~AAlalGA~gVq~GT~Fl~t~ 220 (336)
T COG2070 193 IADGRGIAAALALGADGVQMGTRFLATK 220 (336)
T ss_pred ccChHHHHHHHHhccHHHHhhhhhhccc
Confidence 9999999999999999999999999864
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-13 Score=128.66 Aligned_cols=221 Identities=18% Similarity=0.151 Sum_probs=133.5
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH-------hc-C-CCceeEEeeec-C
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-G-PGIRFFQLYVY-K 133 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~-------~~-~-~~~~~~QLy~~-~ 133 (323)
+++|. +.|++.+||+.+ +..| .|+.++.++|....++... .+.+++. +. . ..|+.++|+.. .
T Consensus 8 ~~lgi--ryPii~gpMa~G-iss~----eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYGL--RYAYVAGAMARG-IASA----ELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhCC--CccEECCcccCC-CCCH----HHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 34454 589999999732 3444 7999999999999998643 3454443 32 2 46788888753 3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe--cCC-CCCCchHHHHhhccCCC-Cc-ccc--ccccccccCCCccccchhhHHHHhh
Q 020636 134 DRNVVAQLVRRAERAGFKAIALT--VDT-PRLGRREADIKNRFTLP-PF-LTL--KNFQGLDLGKMDEANDSGLAAYVAG 206 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~it--vd~-p~~g~r~~d~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
+++...+.++...+.|++.+... ++. |.. .+.++ .|+... .+ +.. +.+.... .. +..+.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~~~g~~~~~~~ViakVs-------r~----evAs~ 145 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRDADGRVQIANRIIAKVS-------RP----EVAEA 145 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCcccccccccccceEEEecC-------Ch----hhhhh
Confidence 44444566777788898766533 111 110 11111 011000 00 000 0000000 00 00011
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEEcC-CCCCCCCCCcchHHHHHHHHH---Hh----
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT---- 277 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~vs~-~gg~~~~~~~~~~~~l~~i~~---~~---- 277 (323)
. -....-+.++++.+. |+.|.++|+.+.+.| +|.|++.. .||+. +..+++.+++.+.+ .+
T Consensus 146 ~-f~ppp~~~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~ 214 (418)
T cd04742 146 F-MSPAPERILKKLLAE--------GKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARY 214 (418)
T ss_pred h-cCCCCHHHHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhcc
Confidence 1 112345667777764 234999999999999 59999863 24443 22345566666554 22
Q ss_pred --cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 278 --QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 278 --~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
..++||++.|||.|+.++..|+++||++|++||.|+.+++
T Consensus 215 ~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~E 256 (418)
T cd04742 215 GYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVE 256 (418)
T ss_pred ccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCcc
Confidence 1259999999999999999999999999999999988654
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=128.53 Aligned_cols=232 Identities=17% Similarity=0.154 Sum_probs=145.1
Q ss_pred ceeecCcccccceEECccccccc----CCc-HHHHHHHHHHHHcCCceeecCCCC--------------CC---H---HH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKM----AHP-EGEYATARAASAAGTIMTLSSWST--------------SS---V---EE 116 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l----~~~-~~e~~~a~aa~~~G~~~~vs~~s~--------------~~---~---ee 116 (323)
..+|.+.++++-|+.|||....- +.+ +.....-+.-++-|+++++++... .+ + .+
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~ 85 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHK 85 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHH
Confidence 46788899999999999963211 122 234566666677788888776321 01 1 12
Q ss_pred HHhc---CCCceeEEeeecC---------------------------ChHHH-------HHHHHHHHHcCCcEEEEecCC
Q 020636 117 VAST---GPGIRFFQLYVYK---------------------------DRNVV-------AQLVRRAERAGFKAIALTVDT 159 (323)
Q Consensus 117 i~~~---~~~~~~~QLy~~~---------------------------d~~~~-------~~~~~~a~~~G~~al~itvd~ 159 (323)
+.+. .+...++||+... +.+.+ .+..++++++||+++.|+...
T Consensus 86 l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 86 LVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 2221 2346788884311 11122 223456677899999988652
Q ss_pred CCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc------
Q 020636 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV------ 233 (323)
Q Consensus 160 p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i------ 233 (323)
|+ +-+.|--| ..+ ......+.++. ....+..+.|+.||+.++.||.+|..
T Consensus 166 ---Gy----Ll~qFlSp-~~N----------~RtD~yGGsle------nR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 166 ---GY----LINEFLSP-LSN----------KRTDEYGGSPE------NRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred ---ch----HHHHhcCC-ccC----------CcCCCCCCCHH------HHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 11 11222111 000 00000011111 12446688999999998889999954
Q ss_pred --CCHHH----HHHHHHcCCCEEEEcCCCCCC--CCC-CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-C
Q 020636 234 --LTAED----ARIAVQAGAAGIIVSNHGARQ--LDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 303 (323)
Q Consensus 234 --~~~e~----a~~~~~~Gad~i~vs~~gg~~--~~~-~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-A 303 (323)
.+.++ ++.+.+.|+|.|.|+...... ... ....++...++++.+ ++||++.|+|++++++.++|+.| |
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 25555 467778999999997643211 111 112456677788877 79999999999999999999987 9
Q ss_pred CEEEEccccccCcchh
Q 020636 304 SGIFVSIMPCQCPLTE 319 (323)
Q Consensus 304 d~V~iG~~~~~~~~~~ 319 (323)
|+|++||+++.+|++-
T Consensus 300 D~V~~gR~~iadP~~~ 315 (337)
T PRK13523 300 DLIFIGRELLRNPYFP 315 (337)
T ss_pred ChHHhhHHHHhCccHH
Confidence 9999999999999983
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=116.35 Aligned_cols=184 Identities=23% Similarity=0.262 Sum_probs=125.1
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH-------HHhcCCCceeEEeeecCChHHHHHHHH
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYKDRNVVAQLVR 143 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee-------i~~~~~~~~~~QLy~~~d~~~~~~~~~ 143 (323)
..|+++|||.+. .+ ..+++++.++|....++... .+.++ +.+..+.+..+++.....+....+.++
T Consensus 2 ~~pi~~a~m~g~--~~----~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGV--ST----PELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCC--CC----HHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 479999999774 33 47999999998655554321 12222 222222345577764321123556788
Q ss_pred HHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh
Q 020636 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (323)
Q Consensus 144 ~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 223 (323)
.+.++|++.+.+.-+. ..+.++++++
T Consensus 75 ~~~~~g~d~v~l~~~~-----------------------------------------------------~~~~~~~~~~- 100 (236)
T cd04730 75 VALEEGVPVVSFSFGP-----------------------------------------------------PAEVVERLKA- 100 (236)
T ss_pred HHHhCCCCEEEEcCCC-----------------------------------------------------CHHHHHHHHH-
Confidence 8889999988764210 1123344443
Q ss_pred cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC--CCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 020636 224 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (323)
Q Consensus 224 ~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g--g~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l 301 (323)
.+++++++ +.+.++++.+.+.|+|+|.+.+.+ |.........++.+.++++.+ ++||++.|||++++|+.+++..
T Consensus 101 ~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~ 177 (236)
T cd04730 101 AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALAL 177 (236)
T ss_pred cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHc
Confidence 35666654 567788999999999999986542 221111134678888888877 7999999999999999999999
Q ss_pred CCCEEEEccccccCcch
Q 020636 302 GASGIFVSIMPCQCPLT 318 (323)
Q Consensus 302 GAd~V~iG~~~~~~~~~ 318 (323)
|||+|++|+.++.++..
T Consensus 178 GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 178 GADGVQMGTRFLATEES 194 (236)
T ss_pred CCcEEEEchhhhcCccc
Confidence 99999999999887654
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=124.38 Aligned_cols=109 Identities=22% Similarity=0.169 Sum_probs=85.9
Q ss_pred CccCHHHHHHHHHhc--CCCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCC--------CcchH
Q 020636 210 RSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQLDY--------VPATI 267 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~--~~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~--------~~~~~ 267 (323)
..+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|+|.+++....+... ....+
T Consensus 191 ~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~ 270 (327)
T cd02803 191 ARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFL 270 (327)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhH
Confidence 345678899999998 679999965 23444 678889999999998754322111 12345
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-CCCEEEEccccccCcchhh
Q 020636 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 268 ~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l-GAd~V~iG~~~~~~~~~~~ 320 (323)
+.+..+++.+ ++||+++|||++++++.++++. |||.|++||+++.+|++-+
T Consensus 271 ~~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~ 322 (327)
T cd02803 271 ELAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPN 322 (327)
T ss_pred HHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHH
Confidence 6778888887 7999999999999999999998 7999999999999998743
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.3e-12 Score=121.33 Aligned_cols=221 Identities=19% Similarity=0.167 Sum_probs=131.5
Q ss_pred eecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh-------cCC-Cc-eeEEeeecC-
Q 020636 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS-------TGP-GI-RFFQLYVYK- 133 (323)
Q Consensus 64 ~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~-------~~~-~~-~~~QLy~~~- 133 (323)
+++|. +.|++.+||+. ++.+| .|+.+..++|....++... .+++++.+ ..+ ++ +.++|+...
T Consensus 13 ~~lgi--ryPiiqgpMa~-GiSs~----eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~ 84 (444)
T TIGR02814 13 EDYGV--RYAYVAGAMAN-GIASA----ELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPS 84 (444)
T ss_pred HHhCC--CCcEECccccC-CCCCH----HHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 34454 58999999973 23444 7999999999999998643 45555432 223 36 888887543
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe--cC-CCCCCchHHHHhhccCCCC--ccccc--cccccccCCCccccchhhHHHHhh
Q 020636 134 DRNVVAQLVRRAERAGFKAIALT--VD-TPRLGRREADIKNRFTLPP--FLTLK--NFQGLDLGKMDEANDSGLAAYVAG 206 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~it--vd-~p~~g~r~~d~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
+++...++++.+.+.|++.+... ++ +|.. .+.+. .|+.... .+... .+... +. .+..+.
T Consensus 85 ~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~~ViakV-------sr----~~vAs~ 150 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRNRLIAKV-------SR----PEVAEA 150 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccceEEEec-------CC----HHHHHH
Confidence 33333456666677888876543 11 1111 11111 0010000 00000 00000 00 001111
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEEcC-CCCCCCCCCcchHHHHHHHHH---Hh----
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT---- 277 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~vs~-~gg~~~~~~~~~~~~l~~i~~---~~---- 277 (323)
...| ..-+.++.+.+. |+.|+++|+.+.+.| +|.|++.. .||+. +..+++.+++.+.+ .+
T Consensus 151 f~~p-~p~~~v~~L~~~--------G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~ 219 (444)
T TIGR02814 151 FMSP-APAHILQKLLAE--------GRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRY 219 (444)
T ss_pred hcCC-CcHHHHHHHHHc--------CCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcc
Confidence 1111 224456666554 334999999999999 48888852 24543 33456677777753 33
Q ss_pred --cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 278 --QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 278 --~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
..++||++.|||.|+.++..++++|||+|++||.|+.+++
T Consensus 220 ~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~E 261 (444)
T TIGR02814 220 GYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVE 261 (444)
T ss_pred cCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCcc
Confidence 1268999999999999999999999999999999988654
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=118.41 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=140.1
Q ss_pred ceeecCcccccceEECcccccccC---Cc-HHHHHHHHHHHHcCCceeecCCCCC--------------C------HHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMA---HP-EGEYATARAASAAGTIMTLSSWSTS--------------S------VEEV 117 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~---~~-~~e~~~a~aa~~~G~~~~vs~~s~~--------------~------~eei 117 (323)
..+|.+.++++-|+.|||... +. .| +..+..-+.-++-|+++++++.... + +.++
T Consensus 4 P~~i~~~~lkNRiv~apm~~~-~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l 82 (343)
T cd04734 4 PLQLGHLTLRNRIVSTAHATN-YAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRL 82 (343)
T ss_pred CeeeCCEEecCCeEECCcccc-cccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHH
Confidence 357888999999999999643 22 11 1234666666667888887763210 1 1112
Q ss_pred Hh---cCCCceeEEeeec----------------C--------------Ch----HHH---HHHHHHHHHcCCcEEEEec
Q 020636 118 AS---TGPGIRFFQLYVY----------------K--------------DR----NVV---AQLVRRAERAGFKAIALTV 157 (323)
Q Consensus 118 ~~---~~~~~~~~QLy~~----------------~--------------d~----~~~---~~~~~~a~~~G~~al~itv 157 (323)
.+ ..+...++||... . +. +.+ .+.+++|+++||+++.|+.
T Consensus 83 ~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ 162 (343)
T cd04734 83 AEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQA 162 (343)
T ss_pred HHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 22 1234678887421 0 01 111 2334566778999999886
Q ss_pred CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCC--EEEecc--
Q 020636 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLP--ILVKGV-- 233 (323)
Q Consensus 158 d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~p--v~vK~i-- 233 (323)
.. |+ +-+.|--| ..+-+ +...|.++ +.+..+..+.++.+|+.++.+ |.+|..
T Consensus 163 ah---Gy----Ll~qFlsp-~~N~R----------tD~yGGsl------enR~r~~~eiv~~ir~~vg~~~~v~iRl~~~ 218 (343)
T cd04734 163 AH---GH----LIDQFLSP-LTNRR----------TDEYGGSL------ENRMRFLLEVLAAVRAAVGPDFIVGIRISGD 218 (343)
T ss_pred cc---ch----HHHHhhCC-CcCCC----------CCcCCCCH------HHHhHHHHHHHHHHHHHcCCCCeEEEEeehh
Confidence 21 11 11122111 11100 01111111 123456788999999998644 455532
Q ss_pred ------CCHHH----HHHHHHcC-CCEEEEcCCCCCCC----------CCC-cchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 234 ------LTAED----ARIAVQAG-AAGIIVSNHGARQL----------DYV-PATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 234 ------~~~e~----a~~~~~~G-ad~i~vs~~gg~~~----------~~~-~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.+.++ ++.+.++| +|.|.||....... ... ...++....+++.+ ++|||++|||++
T Consensus 219 ~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~ 296 (343)
T cd04734 219 EDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRD 296 (343)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCC
Confidence 23444 56777898 89999964221110 011 11356777888887 799999999999
Q ss_pred HHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 292 GTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 292 ~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
++++.++++.| ||+|++||+++.+|++=+
T Consensus 297 ~~~~~~~l~~~~~D~V~~gR~~ladP~l~~ 326 (343)
T cd04734 297 PAEAEQALAAGHADMVGMTRAHIADPHLVA 326 (343)
T ss_pred HHHHHHHHHcCCCCeeeecHHhHhCccHHH
Confidence 99999999976 999999999999998743
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-11 Score=115.60 Aligned_cols=108 Identities=19% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCccCHHHHHHHHHhc--CCCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCC--CC-CC-CcchHHHH
Q 020636 209 DRSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DY-VPATIMAL 270 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~--~~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~--~~-~~-~~~~~~~l 270 (323)
++.+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|.|.++.++.. +. .. ....++.+
T Consensus 203 r~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 282 (336)
T cd02932 203 RMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFA 282 (336)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHH
Confidence 4567788999999998 689999933 34554 45667899999999754322 11 11 11234677
Q ss_pred HHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcch
Q 020636 271 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLT 318 (323)
Q Consensus 271 ~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~ 318 (323)
.++++.+ ++||++.|||.+++++.++|+.| ||+|++||+++.+|++
T Consensus 283 ~~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~ 329 (336)
T cd02932 283 ERIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYW 329 (336)
T ss_pred HHHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccH
Confidence 7888877 89999999999999999999998 9999999999999987
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=108.42 Aligned_cols=177 Identities=20% Similarity=0.142 Sum_probs=115.8
Q ss_pred HHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCC-----h--HHHHHHHHHHHHcCCcEEEEecCCCCCC
Q 020636 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD-----R--NVVAQLVRRAERAGFKAIALTVDTPRLG 163 (323)
Q Consensus 91 ~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d-----~--~~~~~~~~~a~~~G~~al~itvd~p~~g 163 (323)
..+++++.+.|+..+... +...++++++...-|....+| +| . ....+.++.+.++|++.++ +|.+...
T Consensus 26 ~~~a~a~~~~G~~~~~~~-~~~~i~~i~~~~~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad~I~--~d~~~~~ 100 (221)
T PRK01130 26 AAMALAAVQGGAVGIRAN-GVEDIKAIRAVVDVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGADIIA--LDATLRP 100 (221)
T ss_pred HHHHHHHHHCCCeEEEcC-CHHHHHHHHHhCCCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCCEEE--EeCCCCC
Confidence 589999999998655431 222334444433334432223 11 0 0023457888899999554 3443210
Q ss_pred chHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHH
Q 020636 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAV 243 (323)
Q Consensus 164 ~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~ 243 (323)
.| +.....+.++.+++..++|++ ..+.+.++++.+.
T Consensus 101 -----------~p--------------------------------~~~~~~~~i~~~~~~~~i~vi-~~v~t~ee~~~a~ 136 (221)
T PRK01130 101 -----------RP--------------------------------DGETLAELVKRIKEYPGQLLM-ADCSTLEEGLAAQ 136 (221)
T ss_pred -----------CC--------------------------------CCCCHHHHHHHHHhCCCCeEE-EeCCCHHHHHHHH
Confidence 00 001123456667664455554 4678999999999
Q ss_pred HcCCCEEEEcCCCCCCC--CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 244 QAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 244 ~~Gad~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+.|+|+|.++++|.+.. ......++.++++++.+ ++||++.|||++++|+.+++++|||+|++|+.++...+.
T Consensus 137 ~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~ 211 (221)
T PRK01130 137 KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEI 211 (221)
T ss_pred HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHH
Confidence 99999998765543221 22344578889998887 799999999999999999999999999999998875543
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=118.13 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=82.7
Q ss_pred CCccCHHHHHHHHHhc--CCCEEEeccC----------------------CHHH----HHHHHHcCCCEEEEcCCCCCCC
Q 020636 209 DRSLSWKDVKWLQTIT--KLPILVKGVL----------------------TAED----ARIAVQAGAAGIIVSNHGARQL 260 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~--~~pv~vK~i~----------------------~~e~----a~~~~~~Gad~i~vs~~gg~~~ 260 (323)
...+..+.|+.+|+.+ +.||.+|... +.++ ++.+.++|+|.|.|+.....+.
T Consensus 200 R~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~ 279 (382)
T cd02931 200 RLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW 279 (382)
T ss_pred HhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence 3557789999999998 4689998541 3344 5677789999999975332111
Q ss_pred C------CCc-c-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 261 D------YVP-A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 261 ~------~~~-~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
. ..+ . .++....+++.+ ++||+++|||++++++.++|+.| ||+|++||+|+.+|++-
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~ 345 (382)
T cd02931 280 YWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVV 345 (382)
T ss_pred ccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHH
Confidence 1 111 1 135667778877 79999999999999999999987 99999999999999874
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-11 Score=103.58 Aligned_cols=185 Identities=23% Similarity=0.226 Sum_probs=121.2
Q ss_pred eEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCC-------CC---HHHHHhcCCCceeEEeeecCChHHHHHHH
Q 020636 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST-------SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (323)
Q Consensus 74 i~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~-------~~---~eei~~~~~~~~~~QLy~~~d~~~~~~~~ 142 (323)
|++++|..+.. +....+++.+.+.|+.++.. +... .. ++.+......+.++|++.....+......
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677655311 34468889999988755533 2111 11 34444444567899998644443333334
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
++++++|++.+.++..++.. +....+.++++++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-----------------------------------------------~~~~~~~~~~i~~ 110 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-----------------------------------------------AREDLELIRELRE 110 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-----------------------------------------------HHHHHHHHHHHHH
Confidence 68889999999888665431 1123567888888
Q ss_pred hc-CCCEEEeccCCHHHHHH-HHHcCCCEEEEcCCCCCCCCCCcc--hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH
Q 020636 223 IT-KLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 298 (323)
Q Consensus 223 ~~-~~pv~vK~i~~~e~a~~-~~~~Gad~i~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka 298 (323)
.+ +.|+++|.....+.... +.+.|+|.|.++++.+........ ....+..+.... ++||+++|||.+++++.++
T Consensus 111 ~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~~~GGi~~~~~~~~~ 188 (200)
T cd04722 111 AVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEA 188 (200)
T ss_pred hcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHH
Confidence 87 78999996543322222 688999999998765433222221 223444444433 7999999999999999999
Q ss_pred HHcCCCEEEEcc
Q 020636 299 LALGASGIFVSI 310 (323)
Q Consensus 299 l~lGAd~V~iG~ 310 (323)
+.+|||+|++||
T Consensus 189 ~~~Gad~v~vgs 200 (200)
T cd04722 189 LALGADGVIVGS 200 (200)
T ss_pred HHhCCCEEEecC
Confidence 999999999996
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=112.57 Aligned_cols=269 Identities=22% Similarity=0.303 Sum_probs=145.6
Q ss_pred chHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecCCC
Q 020636 32 DQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWS 110 (323)
Q Consensus 32 ~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~s 110 (323)
-|.++|--.. +..|.|.||.=.. .+.++.++++|.++++||++|. |+ |.++| ......+.|..++ +++.+
T Consensus 57 ~E~sHrlAv~-aas~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA-Gf----dk~~e--aidgL~~~gfG~ieigSvT 127 (398)
T KOG1436|consen 57 PEFSHRLAVL-AASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA-GF----DKNAE--AIDGLANSGFGFIEIGSVT 127 (398)
T ss_pred HHHHHHHHHH-HHHhCCCchhccC-CccchhhHHhhhhccCchhhhh-cc----CcchH--HHHHHHhCCCceEEecccc
Confidence 3455555443 3678899985433 3557888999999999999997 33 44343 4455556787766 55543
Q ss_pred CCCHHHHHhcCCCceeEEe---------eecCChHHHHHHHHHH---HHcC---C-cEEEEecCCCCC-CchHHHHhhcc
Q 020636 111 TSSVEEVASTGPGIRFFQL---------YVYKDRNVVAQLVRRA---ERAG---F-KAIALTVDTPRL-GRREADIKNRF 173 (323)
Q Consensus 111 ~~~~eei~~~~~~~~~~QL---------y~~~d~~~~~~~~~~a---~~~G---~-~al~itvd~p~~-g~r~~d~~~~~ 173 (323)
. .++ +-+|.|+.|.| |.+.+.+. ...++|+ +.+. . ..+.|+++..-. ..-..|+-.+.
T Consensus 128 p--~pq--eGNPkPRvfrl~ed~~vINryGfns~Gi-~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV 202 (398)
T KOG1436|consen 128 P--KPQ--EGNPKPRVFRLPEDLAVINRYGFNSEGI-DAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGV 202 (398)
T ss_pred c--CCC--CCCCCCceEecccccchhhccCCCcccH-HHHHHHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHh
Confidence 3 222 33455666655 22222211 1222222 1111 1 112233322110 11122222221
Q ss_pred CCCCccccccccccccCCCccccchhhHHHHhhccCCccC--HHHHHHHHHh----cCCCEEEeccCC-----HHH-HHH
Q 020636 174 TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS--WKDVKWLQTI----TKLPILVKGVLT-----AED-ARI 241 (323)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~----~~~pv~vK~i~~-----~e~-a~~ 241 (323)
.. ...+.++..-+++..+..++.. + +.+.++. ...+..-+.. .+.|+.+|...+ .+| +..
T Consensus 203 ~~-----~g~~adylviNvSsPNtpGlr~-l--q~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v 274 (398)
T KOG1436|consen 203 RV-----FGPFADYLVINVSSPNTPGLRS-L--QKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALV 274 (398)
T ss_pred hh-----cccccceEEEeccCCCCcchhh-h--hhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHH
Confidence 10 0001111111122223333221 1 1122221 1111112222 145899996532 222 556
Q ss_pred HHHcCCCEEEEcCCCC-CC--------------CCC---CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCC
Q 020636 242 AVQAGAAGIIVSNHGA-RQ--------------LDY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg-~~--------------~~~---~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGA 303 (323)
+.+.+.|+++++|..= |. +.+ .+.+.+.++++...+.++||||..|||.||.|+.+-+.+||
T Consensus 275 ~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGA 354 (398)
T KOG1436|consen 275 VKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGA 354 (398)
T ss_pred HHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCc
Confidence 6789999999988531 10 111 13356788888888888999999999999999999999999
Q ss_pred CEEEEccccc--cCcchhhhc
Q 020636 304 SGIFVSIMPC--QCPLTEKIN 322 (323)
Q Consensus 304 d~V~iG~~~~--~~~~~~~~~ 322 (323)
+.|+++++|. +.+.++||-
T Consensus 355 SlvQlyTal~yeGp~i~~kIk 375 (398)
T KOG1436|consen 355 SLVQLYTALVYEGPAIIEKIK 375 (398)
T ss_pred hHHHHHHHHhhcCchhHHHHH
Confidence 9999999884 466666663
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-11 Score=106.34 Aligned_cols=104 Identities=22% Similarity=0.193 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.+.++++++..+.|+++ .+.+.++++.+.+.|+|+|.+.++|-+. .....+.++.++++++.+ ++||++.|||++
T Consensus 112 ~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~ 188 (219)
T cd04729 112 AELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINS 188 (219)
T ss_pred HHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCC
Confidence 45677777765566665 5788999999999999999776555322 122345678899998877 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 292 GTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
++|+.+++++|||+|++|+.++...+.++
T Consensus 189 ~~~~~~~l~~GadgV~vGsal~~~~~~~~ 217 (219)
T cd04729 189 PEQAAKALELGADAVVVGSAITRPEHITG 217 (219)
T ss_pred HHHHHHHHHCCCCEEEEchHHhChHhHhh
Confidence 99999999999999999999988877654
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.6e-11 Score=113.21 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=80.5
Q ss_pred CccCHHHHHHHHHhc--CCCEEEecc------------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHH
Q 020636 210 RSLSWKDVKWLQTIT--KLPILVKGV------------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALE 271 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~--~~pv~vK~i------------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~ 271 (323)
..+..+.|+.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|.|.++...-..............
T Consensus 194 ~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~ 273 (361)
T cd04747 194 SRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAG 273 (361)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHH
Confidence 456788999999998 478999854 23444 445678999999887632111111122345556
Q ss_pred HHHHHhcCCCeEEEecCC------------------CCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 272 EVVKATQGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 272 ~i~~~~~~~~pvia~GGI------------------~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
.+++.+ ++||++.|+| ++++++.++|+.| ||+|++||+++.+|++-
T Consensus 274 ~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~ 338 (361)
T cd04747 274 WTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWV 338 (361)
T ss_pred HHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHH
Confidence 677777 7999999999 6999999999976 99999999999999873
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-11 Score=116.01 Aligned_cols=111 Identities=17% Similarity=0.119 Sum_probs=81.6
Q ss_pred CccCHHHHHHHHHhcC------CCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCCCC--CCCcchHHH
Q 020636 210 RSLSWKDVKWLQTITK------LPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQL--DYVPATIMA 269 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~------~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~~~--~~~~~~~~~ 269 (323)
..+..|.++.+|+.++ .||.+|.. .+.++ ++.+.++|+|+|.|+.++.+.. .........
T Consensus 194 ~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~ 273 (353)
T cd04735 194 MRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTI 273 (353)
T ss_pred HHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHH
Confidence 4567889999999875 35666532 23444 5777899999999986433211 111223455
Q ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 270 l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+..+++.+..++|||+.|||++++++.++++.|||+|++||+++.+|++-+
T Consensus 274 ~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~~ 324 (353)
T cd04735 274 MELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDPDWVE 324 (353)
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHHH
Confidence 566666654479999999999999999999999999999999999998743
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=102.97 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.+.++++|+.. -+++..+.|.||++.+.++|+|.|....+|++. .. ..|+++++.++.+. .+|||+.|+|++
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~t 155 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIHT 155 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--S
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCCC
Confidence 45689999986 688999999999999999999999887766543 22 66789999998863 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEcccc
Q 020636 292 GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~ 312 (323)
++++.++|.+||++|.+|++.
T Consensus 156 pe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 156 PEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp HHHHHHHHHTT-SEEEE-HHH
T ss_pred HHHHHHHHhcCCeEEEECccc
Confidence 999999999999999999876
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=117.46 Aligned_cols=220 Identities=20% Similarity=0.217 Sum_probs=133.8
Q ss_pred cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHH
Q 020636 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (323)
Q Consensus 68 ~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~ 147 (323)
..+..||.++.|+++.+ .++...++|+++.+.|.-+..++.. ...++. + .....+.|+-. .-.....+.+.
T Consensus 163 ~~i~~~~~~~aMS~GAl-S~eA~~alA~a~~~~G~~sntGEGG-e~~~~~-~-~~~s~I~QvaS-GRFGV~~~yL~---- 233 (485)
T COG0069 163 LELKKRFVTGAMSFGAL-SKEAHEALARAMNRIGTKSNTGEGG-EDPERY-E-DGRSAIKQVAS-GRFGVTPEYLA---- 233 (485)
T ss_pred ceeeecccccccCCccc-cHHHHHHHHHHHHHhcCcccCCCCC-CCHHHh-c-cccceEEEecc-ccCccCHHHhC----
Confidence 56778999999999876 5668889999999999998888865 333333 1 22446778632 23333333332
Q ss_pred cCCcEEEEecCCCCCCchHHHHhhccCCC-Cccccc--cccccccCCCccccchhhHHHHhhccCCcc-CHHH----HHH
Q 020636 148 AGFKAIALTVDTPRLGRREADIKNRFTLP-PFLTLK--NFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKD----VKW 219 (323)
Q Consensus 148 ~G~~al~itvd~p~~g~r~~d~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----i~~ 219 (323)
.++++-|-+..-. +.- .+=.+| .|++.. .+...+.+ .+ .+++..+++. +.++ |..
T Consensus 234 -~a~~ieIKiaQGA---KPG---eGG~Lpg~KV~~~IA~~R~~~pG-------~~---~ISP~pHHDiysieDLaqlI~d 296 (485)
T COG0069 234 -NADAIEIKIAQGA---KPG---EGGQLPGEKVTPEIAKTRGSPPG-------VG---LISPPPHHDIYSIEDLAQLIKD 296 (485)
T ss_pred -ccceEEEEeccCC---CCC---CCCCCCCccCCHHHHHhcCCCCC-------CC---CcCCCCcccccCHHHHHHHHHH
Confidence 3445555443211 000 000122 122210 00011111 00 1222233333 4544 455
Q ss_pred HHHhc-CCCEEEeccC--CHHHHHH-HHHcCCCEEEEcCCCC-CC------C-CCCcchHHHHHHHHHHh-----cCCCe
Q 020636 220 LQTIT-KLPILVKGVL--TAEDARI-AVQAGAAGIIVSNHGA-RQ------L-DYVPATIMALEEVVKAT-----QGRIP 282 (323)
Q Consensus 220 i~~~~-~~pv~vK~i~--~~e~a~~-~~~~Gad~i~vs~~gg-~~------~-~~~~~~~~~l~~i~~~~-----~~~~p 282 (323)
+|+.. ..+|.||.+. ..+.+.. ..+++||.|+|++|.| +. . ..+.|....|++..+.+ ++++.
T Consensus 297 Lk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~ 376 (485)
T COG0069 297 LKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVK 376 (485)
T ss_pred HHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeE
Confidence 55554 2579999773 3455444 7899999999999854 32 1 23445555677776655 46799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 283 VFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 283 via~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
|+++||++|+.|++||++||||.|.+||+.+
T Consensus 377 l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~l 407 (485)
T COG0069 377 LIADGGLRTGADVAKAAALGADAVGFGTAAL 407 (485)
T ss_pred EEecCCccCHHHHHHHHHhCcchhhhchHHH
Confidence 9999999999999999999999999999764
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-10 Score=111.19 Aligned_cols=233 Identities=16% Similarity=0.119 Sum_probs=139.4
Q ss_pred ceeecCcccccceEECcccc--cccCCc-HHHHHHHHHHHHcCCceeecCCCCC--------------C---H---HHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAM--QKMAHP-EGEYATARAASAAGTIMTLSSWSTS--------------S---V---EEVA 118 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~--~~l~~~-~~e~~~a~aa~~~G~~~~vs~~s~~--------------~---~---eei~ 118 (323)
..+|.+.++++-|+.|||.. ..-..+ +..+..-+.-++-|+++++++.... + + .++.
T Consensus 4 P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~ 83 (353)
T cd02930 4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLIT 83 (353)
T ss_pred CeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHH
Confidence 35788999999999999962 111122 2345666666666888887653110 0 1 2222
Q ss_pred hc---CCCceeEEeeec--------------------------CChHHH-------HHHHHHHHHcCCcEEEEecCCCCC
Q 020636 119 ST---GPGIRFFQLYVY--------------------------KDRNVV-------AQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 119 ~~---~~~~~~~QLy~~--------------------------~d~~~~-------~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
+. .+...++||... -+.+.+ .+.+++++++||+++.|+...
T Consensus 84 ~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ah--- 160 (353)
T cd02930 84 DAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSE--- 160 (353)
T ss_pred HHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc---
Confidence 21 234678888321 011112 233456677899999886421
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC--CCEEEecc-------
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK--LPILVKGV------- 233 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~pv~vK~i------- 233 (323)
|+ +-+.|--| ..+ ..+...+.++ +....+..+.++.+|+.++ .+|.+|..
T Consensus 161 Gy----Ll~qFlsp-~~N----------~RtD~yGGsl------enR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~ 219 (353)
T cd02930 161 GY----LINQFLAP-RTN----------KRTDEWGGSF------ENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG 219 (353)
T ss_pred ch----HHHHhcCC-ccC----------CCcCccCCCH------HHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCC
Confidence 11 11222111 000 0000011111 1234567889999999985 45666532
Q ss_pred -CCHHH----HHHHHHcCCCEEEEcC--CCCCCCC--C-Ccc--hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 020636 234 -LTAED----ARIAVQAGAAGIIVSN--HGARQLD--Y-VPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (323)
Q Consensus 234 -~~~e~----a~~~~~~Gad~i~vs~--~gg~~~~--~-~~~--~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l 301 (323)
.+.++ ++.+.++|+|.|.||. |..+... . .+. ..+...++++.+ ++||++.|++++..++.++++.
T Consensus 220 g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~ 297 (353)
T cd02930 220 GSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLAD 297 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHC
Confidence 34444 5677889999999974 2222111 0 111 245567788877 8999999999999999999998
Q ss_pred C-CCEEEEccccccCcchhh
Q 020636 302 G-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 302 G-Ad~V~iG~~~~~~~~~~~ 320 (323)
| +|+|++||+++..|++-+
T Consensus 298 g~~D~V~~gR~~l~dP~~~~ 317 (353)
T cd02930 298 GDADMVSMARPFLADPDFVA 317 (353)
T ss_pred CCCChhHhhHHHHHCccHHH
Confidence 7 999999999999998743
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=124.95 Aligned_cols=217 Identities=19% Similarity=0.130 Sum_probs=132.2
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCc
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ 151 (323)
.+|.++.|+++.+ +++.-.++|+++.+.|+..+.++.. ...++... .....++|+-. .......+.+. .++
T Consensus 859 ~rf~~~aMSfGal-S~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~QiaS-GrFGv~~e~l~-----~a~ 929 (1485)
T PRK11750 859 KRFDSAAMSIGAL-SPEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVAS-GRFGVTPAYLV-----NAE 929 (1485)
T ss_pred cccccccCCCCcc-CHHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEccC-CcCCCCHHHhc-----cCC
Confidence 4699999999866 5668889999999999999998864 33444422 23456888732 22222233333 256
Q ss_pred EEEEecCCCCCCchHHHHhhccCCC-Ccccc--ccccccccCCCccccchhhHHHHhhccCCcc-CHHH----HHHHHHh
Q 020636 152 AIALTVDTPRLGRREADIKNRFTLP-PFLTL--KNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKD----VKWLQTI 223 (323)
Q Consensus 152 al~itvd~p~~g~r~~d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----i~~i~~~ 223 (323)
.|-|.+..-..+- .|=.+| .|++. ..+...+.+. ..+++..++++ +.|+ |.++|+.
T Consensus 930 ~ieIKi~QGAKPG------~GG~Lpg~KV~~~IA~~R~~~~G~----------~liSP~phhdiySieDL~qlI~~Lk~~ 993 (1485)
T PRK11750 930 VLQIKVAQGAKPG------EGGQLPGDKVNPLIARLRYSVPGV----------TLISPPPHHDIYSIEDLAQLIFDLKQV 993 (1485)
T ss_pred EEEEEecCCCCCC------CCCcCccccCCHHHHHHcCCCCCC----------CCCCCCCCccCCCHHHHHHHHHHHHHh
Confidence 6766664322100 000122 12221 1111111110 02222334444 4554 5556666
Q ss_pred c-CCCEEEeccCC--HHH-HHHHHHcCCCEEEEcCCCCCC-------C-CCCcchHHHHHHHHHHh-----cCCCeEEEe
Q 020636 224 T-KLPILVKGVLT--AED-ARIAVQAGAAGIIVSNHGARQ-------L-DYVPATIMALEEVVKAT-----QGRIPVFLD 286 (323)
Q Consensus 224 ~-~~pv~vK~i~~--~e~-a~~~~~~Gad~i~vs~~gg~~-------~-~~~~~~~~~l~~i~~~~-----~~~~pvia~ 286 (323)
. +.||.||.+.. ..+ +.-+.++|+|.|++++|.|.. . +.+.|....|.++.+.+ ++++.|+++
T Consensus 994 ~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~ 1073 (1485)
T PRK11750 994 NPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVD 1073 (1485)
T ss_pred CCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEc
Confidence 5 46999997632 222 335678999999999986522 1 22344334576666554 457999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
||++|+.|++||++||||.|.+||+++
T Consensus 1074 Ggl~t~~Dv~kA~aLGAd~~~~gt~~l 1100 (1485)
T PRK11750 1074 GGLKTGLDVIKAAILGAESFGFGTGPM 1100 (1485)
T ss_pred CCcCCHHHHHHHHHcCCcccccchHHH
Confidence 999999999999999999999999775
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-10 Score=115.74 Aligned_cols=107 Identities=19% Similarity=0.112 Sum_probs=80.2
Q ss_pred CccCHHHHHHHHHhc--CCCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCC--CC-CCCc-chHHHHH
Q 020636 210 RSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMALE 271 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~--~~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~--~~-~~~~-~~~~~l~ 271 (323)
..+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.++|+|.|.||..+.. +. ...+ -......
T Consensus 601 ~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~ 680 (765)
T PRK08255 601 LRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFAD 680 (765)
T ss_pred hHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHH
Confidence 345678999999987 479999954 23444 57778999999999742211 10 0111 1234456
Q ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcch
Q 020636 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLT 318 (323)
Q Consensus 272 ~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~ 318 (323)
++++.+ ++||++.|+|++++++.++|+.| ||+|++||+|+.+|+|
T Consensus 681 ~ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 681 RIRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAW 726 (765)
T ss_pred HHHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccH
Confidence 677777 79999999999999999999976 9999999999999965
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=109.14 Aligned_cols=110 Identities=21% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCccCHHHHHHHHHhcC--CCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCC---------cc
Q 020636 209 DRSLSWKDVKWLQTITK--LPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---------PA 265 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~--~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~---------~~ 265 (323)
...+..+.|+.+|+.++ .||.+|.. .+.++ ++.+.+.|+|.|.|+.....+.... +.
T Consensus 198 R~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 277 (338)
T cd04733 198 RARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE 277 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccc
Confidence 45577899999999984 78999863 35555 5677889999999975432111100 01
Q ss_pred --hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 266 --TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 266 --~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
.++...++++.+ ++||+++|+|.+.+++.++++.| ||.|++||+++.+|++=+
T Consensus 278 ~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~ 333 (338)
T cd04733 278 AYFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPN 333 (338)
T ss_pred hhhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHH
Confidence 145667788888 89999999999999999999987 999999999999998743
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-10 Score=107.93 Aligned_cols=107 Identities=15% Similarity=-0.005 Sum_probs=83.3
Q ss_pred CccCHHHHHHHHHhcCC-CEEEecc-----------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHH
Q 020636 210 RSLSWKDVKWLQTITKL-PILVKGV-----------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~-pv~vK~i-----------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i 273 (323)
..+..+.++.+|+.++. ||.+|.. .+.++ ++.+.+.|+|.|.||... .........++...++
T Consensus 202 ~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~-~~~~~~~~~~~~~~~i 280 (338)
T cd02933 202 ARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR-VAGNPEDQPPDFLDFL 280 (338)
T ss_pred hhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCcccccchHHHHHH
Confidence 45678899999998854 8999853 14444 577788999999996432 1111233456778888
Q ss_pred HHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 274 ~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
++++ ++|||++|||+ ++++.++|+.| ||.|++||+++.+|+|-+
T Consensus 281 k~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~ 325 (338)
T cd02933 281 RKAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANPDLVE 325 (338)
T ss_pred HHHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHH
Confidence 8888 89999999997 99999999987 999999999999998743
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=104.72 Aligned_cols=108 Identities=9% Similarity=-0.026 Sum_probs=77.4
Q ss_pred CCccCHHHHHHHHHhcC--CCEEEecc----------CCHHHH----HHHHHcCCCEEEEcCCCCC----CCCCCc--ch
Q 020636 209 DRSLSWKDVKWLQTITK--LPILVKGV----------LTAEDA----RIAVQAGAAGIIVSNHGAR----QLDYVP--AT 266 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~--~pv~vK~i----------~~~e~a----~~~~~~Gad~i~vs~~gg~----~~~~~~--~~ 266 (323)
...+..|.++.||+.++ .||.+|.. .+.+++ +.+.+ .+|.+.++...-. .....+ ..
T Consensus 199 R~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~ 277 (370)
T cd02929 199 RARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQ 277 (370)
T ss_pred hhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCcccc
Confidence 35567899999999985 56666632 234443 34443 4899988752110 000111 12
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 267 ~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++...++++.+ ++|||+.|||++++++.++|+.| ||+|++||+|+.+|++-
T Consensus 278 ~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~ 329 (370)
T cd02929 278 EPYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLP 329 (370)
T ss_pred HHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHH
Confidence 45667788877 89999999999999999999987 99999999999999874
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=104.42 Aligned_cols=210 Identities=17% Similarity=0.168 Sum_probs=144.5
Q ss_pred ccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCC------HHH--HHhcC--CCceeEEeeecCChHHH
Q 020636 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS------VEE--VASTG--PGIRFFQLYVYKDRNVV 138 (323)
Q Consensus 69 ~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~------~ee--i~~~~--~~~~~~QLy~~~d~~~~ 138 (323)
++.--.++||++-. |+++++|.|.++|...+.|+|+.+. ..| +.+.. ...+.+||-. ..+..+
T Consensus 262 D~r~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag-~~pdt~ 334 (614)
T KOG2333|consen 262 DFRDKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAG-SKPDTA 334 (614)
T ss_pred ccccceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEecc-CChHHH
Confidence 34466899997653 6779999999999999999985421 111 22222 3578999964 444444
Q ss_pred HHHHHH-HHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 139 AQLVRR-AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 139 ~~~~~~-a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
.+.++- ++..-++.|+||++||.. + .. ..+.|+++. ..|......+
T Consensus 335 ~kaaq~i~e~~~VDFIDlN~GCPID------l----------vy-----------~qG~GsALl------~rp~rl~~~l 381 (614)
T KOG2333|consen 335 AKAAQVIAETCDVDFIDLNMGCPID------L----------VY-----------RQGGGSALL------NRPARLIRIL 381 (614)
T ss_pred HHHHHHHHhhcceeeeeccCCCChh------e----------ee-----------ccCCcchhh------cCcHHHHHHH
Confidence 444433 345678999999999972 1 00 112333332 1233334455
Q ss_pred HHHHHhcC-CCEEEeccCC--------HHHHHHHH-HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 218 KWLQTITK-LPILVKGVLT--------AEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 218 ~~i~~~~~-~pv~vK~i~~--------~e~a~~~~-~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
+......+ +|+.||..+- .+-...+. +.|+++|.++++...|-+...+.++.+.++.+.+...+|+|.+|
T Consensus 382 ~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNG 461 (614)
T KOG2333|consen 382 RAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNG 461 (614)
T ss_pred HHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecC
Confidence 55555554 5999996421 12234444 89999999966555556667789999999999886569999999
Q ss_pred CCCCHHHHHHHHHcC--CCEEEEccccccCcch
Q 020636 288 GVRRGTDVFKALALG--ASGIFVSIMPCQCPLT 318 (323)
Q Consensus 288 GI~~~~di~kal~lG--Ad~V~iG~~~~~~~~~ 318 (323)
.|-|.+|-.+-+..+ .+.|||||..+..||.
T Consensus 462 Di~S~eDw~~~~~~~p~v~svMIaRGALIKPWI 494 (614)
T KOG2333|consen 462 DILSWEDWYERLNQNPNVDSVMIARGALIKPWI 494 (614)
T ss_pred ccccHHHHHHHhhcCCCcceEEeeccccccchH
Confidence 999999999888866 9999999999999984
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-10 Score=102.57 Aligned_cols=105 Identities=26% Similarity=0.276 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC------------------C-----C-------CC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------------------L-----D-------YV 263 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~------------------~-----~-------~~ 263 (323)
.+.+..+++.++.|+ +-++.+.++|.++.+.|+|.|-..+-.|+. + + ..
T Consensus 110 d~~~~~~K~~f~~~f-mad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~ 188 (293)
T PRK04180 110 DEEYHIDKWDFTVPF-VCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKEL 188 (293)
T ss_pred HHHHHHHHHHcCCCE-EccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcccc
Confidence 456778888887654 668899999999999999999876322220 0 0 12
Q ss_pred cchHHHHHHHHHHhcCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 264 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvi--a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
.+++++|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+|+.++..++-.++
T Consensus 189 ~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~ 246 (293)
T PRK04180 189 QAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKR 246 (293)
T ss_pred CCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHH
Confidence 45788999998876 79998 9999999999999999999999999999876665544
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-08 Score=87.95 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=73.2
Q ss_pred cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 020636 224 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (323)
Q Consensus 224 ~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l 301 (323)
...-+++..+.+.||+..+.++|+|.|-..-+|++. .....+.+++++++.+ . +++||+.|.+.|++++.+++.+
T Consensus 125 ~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~~ 201 (229)
T COG3010 125 YPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIEI 201 (229)
T ss_pred cCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHHh
Confidence 345689999999999999999999999765555443 2334678899998887 3 7999999999999999999999
Q ss_pred CCCEEEEcccc
Q 020636 302 GASGIFVSIMP 312 (323)
Q Consensus 302 GAd~V~iG~~~ 312 (323)
||++|.+|+++
T Consensus 202 Ga~aVvVGsAI 212 (229)
T COG3010 202 GADAVVVGSAI 212 (229)
T ss_pred CCeEEEECccc
Confidence 99999999876
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-09 Score=94.88 Aligned_cols=104 Identities=25% Similarity=0.259 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC-----------------------C-------CC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------D-------YV 263 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~-----------------------~-------~~ 263 (323)
.+.+..+|+.++. +++-++.|.++|.++.+.|+|.|-...+|++.- + ..
T Consensus 101 ~~~~~~iK~~~~~-l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKV-PFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCC-cEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 4467778887755 567899999999999999999998877665431 0 12
Q ss_pred cchHHHHHHHHHHhcCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 264 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvi--a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
.+.++.|.++.+.+ ++||+ +.|||.+++++.+++.+||++|++|++++..++-.+
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~ 236 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEK 236 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHH
Confidence 35788999998877 79997 999999999999999999999999999987655444
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-09 Score=94.90 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
+.+.++++++.+.|+|.+.+++..+. ...+.++.+.++++.++.++||++.|||.+++|+.+++.+||++|.+|+++
T Consensus 128 v~~~~e~~~~~~~g~~~i~~t~~~~~---~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai 204 (217)
T cd00331 128 VHDEEELERALALGAKIIGINNRDLK---TFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESL 204 (217)
T ss_pred ECCHHHHHHHHHcCCCEEEEeCCCcc---ccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 45677777777777777766532222 123456777888776544789999999999999999999999999999999
Q ss_pred ccCcchh
Q 020636 313 CQCPLTE 319 (323)
Q Consensus 313 ~~~~~~~ 319 (323)
+..++-.
T Consensus 205 ~~~~~p~ 211 (217)
T cd00331 205 MRAPDPG 211 (217)
T ss_pred cCCCCHH
Confidence 8876543
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-09 Score=99.17 Aligned_cols=108 Identities=25% Similarity=0.245 Sum_probs=81.0
Q ss_pred ccCHHHHHHHHHhcC--CCEEEecc---------CCHHH----HHHHHHcC-CCEEEEcCCCCC---CCCCC-cc-hHHH
Q 020636 211 SLSWKDVKWLQTITK--LPILVKGV---------LTAED----ARIAVQAG-AAGIIVSNHGAR---QLDYV-PA-TIMA 269 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~--~pv~vK~i---------~~~e~----a~~~~~~G-ad~i~vs~~gg~---~~~~~-~~-~~~~ 269 (323)
.+..|.++.+|+.++ .||.++.. .+.++ ++.+.+.| +|.|.++..+.. ..... +. ....
T Consensus 200 Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~ 279 (363)
T COG1902 200 RFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEF 279 (363)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHH
Confidence 366889999999995 47888854 13333 77888999 799999864321 11111 11 1234
Q ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 270 l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
...++..+ ++|||++|+|.+++.+.++|+-| ||.|.+||+|+.+|.|-+
T Consensus 280 a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~ 329 (363)
T COG1902 280 AARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVL 329 (363)
T ss_pred HHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHH
Confidence 44566666 69999999999999999999998 999999999999998854
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-09 Score=97.49 Aligned_cols=167 Identities=16% Similarity=0.150 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhh---ccCCCCccccccc-cccccCCCccccchhhHHHHhhccCCc-cC
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKN---RFTLPPFLTLKNF-QGLDLGKMDEANDSGLAAYVAGQIDRS-LS 213 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 213 (323)
.++.+..++.|+.+|-+..|...++.-..+++. ...+| .+ .++-..+. .+.......-|-- +.
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iP------vl~kdfi~~~~------qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLP------VLRKDFIIDPY------QIYEARAAGADAILLI 140 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCC------EEeeeecCCHH------HHHHHHHcCCCEEEEE
Confidence 467778889999999888887776554444432 11122 11 11111110 0111111111111 11
Q ss_pred -----HHHHHHHHHhc---CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 -----WKDVKWLQTIT---KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 -----~~~i~~i~~~~---~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+.+.. +. ..+-.+.+.++++++.++|+|.|.+++. .+....+.++...++.+.+++..++|+
T Consensus 141 ~~~l~~~~l~~li~~a~~lGl-~~lvevh~~~E~~~A~~~gadiIgin~r---dl~~~~~d~~~~~~l~~~~p~~~~vIa 216 (260)
T PRK00278 141 VAALDDEQLKELLDYAHSLGL-DVLVEVHDEEELERALKLGAPLIGINNR---NLKTFEVDLETTERLAPLIPSDRLVVS 216 (260)
T ss_pred eccCCHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCCEEEECCC---CcccccCCHHHHHHHHHhCCCCCEEEE
Confidence 11233333222 22 2233456777888888888887776432 222234456677777776654579999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
.|||.+++|+.+++.+|||+|.+|+.++..++.++.
T Consensus 217 egGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~ 252 (260)
T PRK00278 217 ESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAA 252 (260)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence 999999999999999999999999999998876553
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.7e-08 Score=93.61 Aligned_cols=104 Identities=13% Similarity=-0.089 Sum_probs=76.3
Q ss_pred ccCHHHHHHHHHhcC-CCEEEecc-----------CCHHH-----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHH
Q 020636 211 SLSWKDVKWLQTITK-LPILVKGV-----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~-~pv~vK~i-----------~~~e~-----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i 273 (323)
.+..|.|+.+|+.++ -.|.+|.. .+.++ ++.+.+.|+|.|.|+..... ...+-......++
T Consensus 210 Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~--~~~~~~~~~~~~i 287 (362)
T PRK10605 210 RLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWA--GGEPYSDAFREKV 287 (362)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccccc--CCccccHHHHHHH
Confidence 356789999999884 24777642 34444 56777889999999852111 0111123444667
Q ss_pred HHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 274 ~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++.+ ++||++.|++ +++.+.++|+.| ||.|++||+|+.+|+|-
T Consensus 288 k~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~ 331 (362)
T PRK10605 288 RARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPDLV 331 (362)
T ss_pred HHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCccHH
Confidence 7777 7899999996 899999999998 99999999999999874
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=91.71 Aligned_cols=104 Identities=22% Similarity=0.371 Sum_probs=83.1
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCC---------------CC------------------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH---------------GA------------------ 257 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~---------------gg------------------ 257 (323)
.+++.++.+++.+++|+++. ++.++++++.+.+.|||.|++... |.
T Consensus 60 ~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~ 139 (234)
T cd04732 60 VNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKG 139 (234)
T ss_pred CCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECC
Confidence 46788899999889999998 578999999999999999987321 11
Q ss_pred ----CCC------------------------C--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 258 ----RQL------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 258 ----~~~------------------------~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
... + ...+.++.+.++.+.+ ++||++.|||++.+|+.+++..||++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 140 WLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred CeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 000 0 0124567788888776 7999999999999999999999999999
Q ss_pred EccccccCcc
Q 020636 308 VSIMPCQCPL 317 (323)
Q Consensus 308 iG~~~~~~~~ 317 (323)
+||+|+..+.
T Consensus 218 vg~~~~~~~~ 227 (234)
T cd04732 218 VGKALYEGKI 227 (234)
T ss_pred EeHHHHcCCC
Confidence 9999988764
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=91.07 Aligned_cols=102 Identities=25% Similarity=0.373 Sum_probs=78.3
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CCCCC-----------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HGARQ----------------- 259 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~gg~~----------------- 259 (323)
+.+.++.+++.++.|+.++ ++.+.++++.+.++|||.|++.. .|...
T Consensus 60 ~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 60 NLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGW 139 (230)
T ss_pred cHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCC
Confidence 4667888888888888887 46888888888889998887732 11000
Q ss_pred -----C------------------------C--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 260 -----L------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 260 -----~------------------------~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
. + .....++.+.++.+.+ ++||+++|||++.+|+.+++..||++|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 0 0 1123467778887776 79999999999999999999999999999
Q ss_pred ccccccCc
Q 020636 309 SIMPCQCP 316 (323)
Q Consensus 309 G~~~~~~~ 316 (323)
||+|+...
T Consensus 218 g~a~~~~~ 225 (230)
T TIGR00007 218 GKALYEGK 225 (230)
T ss_pred eHHHHcCC
Confidence 99997653
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-08 Score=89.24 Aligned_cols=170 Identities=20% Similarity=0.194 Sum_probs=107.3
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCcccc-----------ch
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN-----------DS 198 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 198 (323)
-+....+.+.++++++.+.|+.+++|. |..-...++.-.+ .++.+..+.++|.|...... +.
T Consensus 16 ~p~~t~~~i~~~~~~A~~~~~~avcv~---p~~v~~a~~~l~~----~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA 88 (221)
T PRK00507 16 KPEATEEDIDKLCDEAKEYGFASVCVN---PSYVKLAAELLKG----SDVKVCTVIGFPLGANTTAVKAFEAKDAIANGA 88 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEEC---HHHHHHHHHHhCC----CCCeEEEEecccCCCChHHHHHHHHHHHHHcCC
Confidence 334567888899999999999999876 3322222222111 23455556677766422100 00
Q ss_pred hhHHHH---hhc--cCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCc
Q 020636 199 GLAAYV---AGQ--IDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVP 264 (323)
Q Consensus 199 ~~~~~~---~~~--~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~ 264 (323)
.-.+.+ +.. ++.....++++.+++.. .|+.+|.+ ++.++ ++.+.++|+|.|..|..- ..+.
T Consensus 89 ~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~----~~~g 163 (221)
T PRK00507 89 DEIDMVINIGALKSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF----STGG 163 (221)
T ss_pred ceEeeeccHHHhcCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCC
Confidence 000000 111 11112234566777654 47889975 45444 456789999988776422 1234
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 265 ~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.+++.+..+.+.++++++|.++|||+|.+|+.+.+.+||+.++..+.
T Consensus 164 at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 164 ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 67777878888887789999999999999999999999999877654
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-09 Score=94.81 Aligned_cols=105 Identities=26% Similarity=0.264 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC---------------------C----------C
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL---------------------D----------Y 262 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~---------------------~----------~ 262 (323)
.+.+..+++.++.|+ +-++.+.++|.++.+.|+|.|-..+.||+.- . .
T Consensus 103 de~~~~~K~~f~vpf-mad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVPF-VCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCCE-EccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 445677788887665 6789999999999999999998877666431 0 0
Q ss_pred CcchHHHHHHHHHHhcCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 263 VPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 263 ~~~~~~~l~~i~~~~~~~~pvi--a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
..+++++|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+|+.++..++-+++
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~ 240 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKL 240 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHH
Confidence 236788999998876 79998 9999999999999999999999999999876655543
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.7e-08 Score=89.09 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=75.6
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCC---------------CCC------------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH---------------GAR------------------ 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~---------------gg~------------------ 258 (323)
+.+.|+++.+.+++|+.+. |+.+.|+++.++++||+.+++... +.+
T Consensus 63 n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~ 142 (241)
T PRK14024 63 NRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWT 142 (241)
T ss_pred cHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCee
Confidence 3567777777777888777 467888888888888888766220 000
Q ss_pred --C------------------------CC--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH---cCCCEEE
Q 020636 259 --Q------------------------LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA---LGASGIF 307 (323)
Q Consensus 259 --~------------------------~~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~---lGAd~V~ 307 (323)
. .+ ...+.++.+.++.+.+ ++|||++|||+|.+|+.+++. .||++|+
T Consensus 143 ~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ 220 (241)
T PRK14024 143 RDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAI 220 (241)
T ss_pred ecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEE
Confidence 0 00 1234788888888877 899999999999999999875 4999999
Q ss_pred EccccccCc
Q 020636 308 VSIMPCQCP 316 (323)
Q Consensus 308 iG~~~~~~~ 316 (323)
+||+++..+
T Consensus 221 igra~~~g~ 229 (241)
T PRK14024 221 VGKALYAGA 229 (241)
T ss_pred EeHHHHcCC
Confidence 999987654
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.4e-08 Score=86.64 Aligned_cols=101 Identities=23% Similarity=0.345 Sum_probs=77.9
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------------------------CCCC
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------------------------HGAR 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------------------------~gg~ 258 (323)
+++.++.+++.++.|++++ |+.+.++++.+.+.|||.|++.. +|..
T Consensus 62 ~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~ 141 (233)
T PRK00748 62 NLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWL 141 (233)
T ss_pred cHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCe
Confidence 5677888888888888888 46888999988889998887622 0100
Q ss_pred ---CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEE
Q 020636 259 ---QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFV 308 (323)
Q Consensus 259 ---~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~i 308 (323)
.. ++ ..+.++.+.++.+.+ ++|||++|||++.+|+.+++..| |++|++
T Consensus 142 ~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 142 ETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 00 01 124578888888776 69999999999999999999998 999999
Q ss_pred ccccccC
Q 020636 309 SIMPCQC 315 (323)
Q Consensus 309 G~~~~~~ 315 (323)
|++|+..
T Consensus 220 g~a~~~~ 226 (233)
T PRK00748 220 GRALYEG 226 (233)
T ss_pred EHHHHcC
Confidence 9998653
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.9e-08 Score=92.39 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=78.1
Q ss_pred cCHHHHHHHHHhc--CCCEEEecc--------CCHHH----HHHHHHcCCCEEEEcCCCCC------C--CCCCc--chH
Q 020636 212 LSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR------Q--LDYVP--ATI 267 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~i--------~~~e~----a~~~~~~Gad~i~vs~~gg~------~--~~~~~--~~~ 267 (323)
+..|.|+.||+.+ +.||.+|.. .+.++ ++.+.+.|+|.+.++...+. . ..... ..+
T Consensus 201 f~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (341)
T PF00724_consen 201 FLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNL 280 (341)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhh
Confidence 5678999999998 477899953 11222 57788899998876532210 0 11111 124
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 268 ~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
.....+++.+ ++|||+.|||++++.+.++++.| ||.|.+||+|+.+|+|-+
T Consensus 281 ~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~ 332 (341)
T PF00724_consen 281 DLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPN 332 (341)
T ss_dssp HHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHH
T ss_pred hhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHH
Confidence 5566777777 89999999999999999999988 999999999999998743
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.5e-08 Score=88.92 Aligned_cols=104 Identities=21% Similarity=0.332 Sum_probs=82.9
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCC---------------CCC-----------------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH---------------GAR----------------- 258 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~---------------gg~----------------- 258 (323)
..++.++.+.+.++.|+++. |+.+.++++.+.++|||.|++... |..
T Consensus 63 ~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g 142 (241)
T PRK13585 63 KNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKG 142 (241)
T ss_pred ccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECC
Confidence 35778888989899999997 578999999999999999987431 100
Q ss_pred -------C----------------------CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 259 -------Q----------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 259 -------~----------------------~~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
. .++ ....++.+.++.+.+ ++||++.|||++.+|+.+++.+||++|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~ 220 (241)
T PRK13585 143 WTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVV 220 (241)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 0 011 123567788888877 7999999999999999999999999999
Q ss_pred EccccccCcc
Q 020636 308 VSIMPCQCPL 317 (323)
Q Consensus 308 iG~~~~~~~~ 317 (323)
+|++++..+.
T Consensus 221 vgsa~~~~~~ 230 (241)
T PRK13585 221 VGSALYKGKF 230 (241)
T ss_pred EEHHHhcCCc
Confidence 9999987654
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.3e-08 Score=87.85 Aligned_cols=102 Identities=26% Similarity=0.315 Sum_probs=82.2
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CCCC-----------------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HGAR----------------- 258 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~gg~----------------- 258 (323)
.+.+.|+++.+.+++|+.+. |+.+.|+++.+.++||+.+++.. +|.+
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw 142 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGW 142 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCC
Confidence 45778999999889999998 57999999999999999998832 1110
Q ss_pred ----CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 259 ----QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 259 ----~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
.. ++ ..+.++++.++.+.. ++||+++|||++.+|+.+++.+|+++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 00 11 134577788887766 79999999999999999999999999999
Q ss_pred ccccccC
Q 020636 309 SIMPCQC 315 (323)
Q Consensus 309 G~~~~~~ 315 (323)
|+++..-
T Consensus 221 G~a~~~~ 227 (234)
T PRK13587 221 GKAAHQA 227 (234)
T ss_pred hHHHHhC
Confidence 9998753
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-07 Score=83.85 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=96.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+.+.++++.+.+.|++.|-+.+ |..- | ...||.- ..+..+.+....+..
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElGi--PfsD------------P----------~aDGpvI---q~a~~~al~~G~~~~ 72 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELGV--PFSD------------P----------LADGPTI---QAADLRALRAGMTPE 72 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCCC------------C----------CCcCHHH---HHHHHHHHHcCCCHH
Confidence 34678888889999999999887654 4410 1 0011100 000111222222333
Q ss_pred cCHHHHHHHHHh-cCCCEEEeccCCH-------HHHHHHHHcCCCEEEEcC---------------CCC---------CC
Q 020636 212 LSWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ 259 (323)
Q Consensus 212 ~~~~~i~~i~~~-~~~pv~vK~i~~~-------e~a~~~~~~Gad~i~vs~---------------~gg---------~~ 259 (323)
..++.++++|+. .+.|++.=...++ +-++.+.++|+|+|++.- +|- +.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 456778888876 6788663333333 347788888998887721 110 00
Q ss_pred ----------CC------------C-----CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 260 ----------LD------------Y-----VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 260 ----------~~------------~-----~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
.+ + .+...+.+.++++.. +.||++.|||+|++++.+++..|||+|.+|+++
T Consensus 153 ~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 153 DERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 00 1 122356677777765 679999999999999999999999999999998
Q ss_pred cc
Q 020636 313 CQ 314 (323)
Q Consensus 313 ~~ 314 (323)
+.
T Consensus 231 v~ 232 (256)
T TIGR00262 231 VK 232 (256)
T ss_pred HH
Confidence 64
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.3e-08 Score=84.77 Aligned_cols=171 Identities=21% Similarity=0.243 Sum_probs=111.1
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc-c--------chhhH
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA-N--------DSGLA 201 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~ 201 (323)
+...++.+.+++++|++.|+.+++|+ |....-.++.-.+- ..+.+..+.+||.|..... . ..|..
T Consensus 19 ~~~T~~~I~~l~~eA~~~~f~avCV~---P~~V~~A~~~l~g~---~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAd 92 (228)
T COG0274 19 PDATEEDIARLCAEAKEYGFAAVCVN---PSYVPLAKEALKGS---TVVRVCTVIGFPLGANTTAVKAAEAREAIENGAD 92 (228)
T ss_pred CCCCHHHHHHHHHHHHhhCceEEEEC---cchHHHHHHHhccC---CCeEEEEecCCCCCCChHHHHHHHHHHHHHcCCC
Confidence 34567888889999999999999876 55433333332211 1233455667777653210 0 00000
Q ss_pred H--HH-----hhccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcc
Q 020636 202 A--YV-----AGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPA 265 (323)
Q Consensus 202 ~--~~-----~~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~ 265 (323)
+ .+ ...++.+...++|+.+++..+.++.+|.| ++.++ .+.+.++|+|.|..|.... .+..
T Consensus 93 EiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gA 168 (228)
T COG0274 93 EIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGA 168 (228)
T ss_pred eeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCC
Confidence 0 00 01123333456788888888766788865 44444 4566899999999886322 3456
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
+++.+.-+++.+++++.|-++|||||.+|+.+++.+||..++..+.
T Consensus 169 T~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~ 214 (228)
T COG0274 169 TVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSG 214 (228)
T ss_pred CHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhHHHhccccH
Confidence 6777777777777789999999999999999999999888776553
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.3e-08 Score=85.98 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=67.3
Q ss_pred ccCCHHHHHHHHHcCCCEEEE--cCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~v--s~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
-..++..++++.++|++.|-. +--|. . .+....+.+..+.+.. ++|||++|||.+++|+.+++++|||+|++|
T Consensus 130 c~dd~~~ar~l~~~G~~~vmPlg~pIGs-g--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 130 CTDDPVLAKRLEDAGCAAVMPLGSPIGS-G--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred eCCCHHHHHHHHHcCCCEeCCCCcCCCC-C--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 357899999999999999954 21121 1 2455678888888775 799999999999999999999999999999
Q ss_pred cccccCcchhhh
Q 020636 310 IMPCQCPLTEKI 321 (323)
Q Consensus 310 ~~~~~~~~~~~~ 321 (323)
++.....+-..|
T Consensus 205 SAIt~a~dP~~m 216 (248)
T cd04728 205 TAIAKAKDPVAM 216 (248)
T ss_pred hHhcCCCCHHHH
Confidence 999775554443
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=84.57 Aligned_cols=100 Identities=27% Similarity=0.413 Sum_probs=84.1
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CCCCC---------------C-
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HGARQ---------------L- 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~gg~~---------------~- 260 (323)
+.+.++++.+.++.||.+. ||.+.++++.++++|++.+++.. +|++- +
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 5678999999999999998 57999999999999999998843 22210 0
Q ss_pred -----------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-CCCEEEE
Q 020636 261 -----------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFV 308 (323)
Q Consensus 261 -----------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l-GAd~V~i 308 (323)
|+ ..+.++++.++.+++ ++||+++|||+|-+|+..+..+ |.++|.+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv 220 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV 220 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence 22 256788999999998 8999999999999999999999 9999999
Q ss_pred cccccc
Q 020636 309 SIMPCQ 314 (323)
Q Consensus 309 G~~~~~ 314 (323)
|++|+.
T Consensus 221 G~ALy~ 226 (241)
T COG0106 221 GRALYE 226 (241)
T ss_pred ehHHhc
Confidence 999864
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-07 Score=84.10 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=75.3
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CC------------CC------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HG------------AR------ 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~g------------g~------ 258 (323)
+++.++.+++.+++|+++. |+.+.++++.+.++|++.++++. +| |.
T Consensus 62 n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~ 141 (254)
T TIGR00735 62 MIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCW 141 (254)
T ss_pred hHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCcc
Confidence 5677788888778887776 56788888888888888887632 01 10
Q ss_pred ------------CC------------------------C--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 020636 259 ------------QL------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 259 ------------~~------------------------~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~ 300 (323)
.. + ...+.++.+.++++.+ ++|||++|||++.+|+.+++.
T Consensus 142 ~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~ 219 (254)
T TIGR00735 142 YEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFT 219 (254)
T ss_pred EEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH
Confidence 00 0 1234567777777776 799999999999999999999
Q ss_pred cC-CCEEEEcccccc
Q 020636 301 LG-ASGIFVSIMPCQ 314 (323)
Q Consensus 301 lG-Ad~V~iG~~~~~ 314 (323)
.| |++|++|++|..
T Consensus 220 ~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 220 KGKADAALAASVFHY 234 (254)
T ss_pred cCCcceeeEhHHHhC
Confidence 88 999999999864
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-07 Score=84.38 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=67.1
Q ss_pred ccCCHHHHHHHHHcCCCEEEE--cCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIV--SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~v--s~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
-..+++.++++.++|++.|-. +--|.. .+....+.+..+.+.. ++|||++|||.+++|+.+++++|||+|++|
T Consensus 130 c~~d~~~ak~l~~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 130 CTDDPVLAKRLEEAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred eCCCHHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 347899999999999999954 211211 2344567788887765 799999999999999999999999999999
Q ss_pred cccccCcchhhh
Q 020636 310 IMPCQCPLTEKI 321 (323)
Q Consensus 310 ~~~~~~~~~~~~ 321 (323)
++....++-..|
T Consensus 205 SAItka~dP~~m 216 (250)
T PRK00208 205 TAIAVAGDPVAM 216 (250)
T ss_pred hHhhCCCCHHHH
Confidence 999875555444
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-07 Score=83.71 Aligned_cols=101 Identities=23% Similarity=0.289 Sum_probs=72.7
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CC----------------C--
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HG----------------A-- 257 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~g----------------g-- 257 (323)
.+++.++++++.+++|+++- |+.+.++++.+.+.|+++++++. +| +
T Consensus 61 ~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~ 140 (253)
T PRK02083 61 TMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRW 140 (253)
T ss_pred chHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCE
Confidence 45777777777777777766 46778888877778888776622 00 0
Q ss_pred ----------CCC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-
Q 020636 258 ----------RQL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA- 300 (323)
Q Consensus 258 ----------~~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~- 300 (323)
... ++ ....++.+.++.+.+ ++|||++|||++.+|+.+++.
T Consensus 141 ~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~ 218 (253)
T PRK02083 141 EVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTE 218 (253)
T ss_pred EEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHh
Confidence 000 00 122467777777766 799999999999999999997
Q ss_pred cCCCEEEEcccccc
Q 020636 301 LGASGIFVSIMPCQ 314 (323)
Q Consensus 301 lGAd~V~iG~~~~~ 314 (323)
.||++|++|++|..
T Consensus 219 ~G~~gvivg~al~~ 232 (253)
T PRK02083 219 GGADAALAASIFHF 232 (253)
T ss_pred CCccEEeEhHHHHc
Confidence 49999999999864
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-06 Score=77.31 Aligned_cols=163 Identities=19% Similarity=0.190 Sum_probs=97.5
Q ss_pred eeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhc-
Q 020636 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ- 207 (323)
Q Consensus 129 Ly~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 207 (323)
+....+++...++++.+.+.|++.+.+++..+..-.--+.++..+ | .+.+ + .+...+ ...+.......
T Consensus 9 i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~--~-~~~i----G--ag~v~~--~~~~~~a~~~Ga 77 (190)
T cd00452 9 VLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEF--P-EALI----G--AGTVLT--PEQADAAIAAGA 77 (190)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--C-CCEE----E--EEeCCC--HHHHHHHHHcCC
Confidence 333456666677777777788888888776554211122233322 1 0100 0 000000 00000000000
Q ss_pred ---cCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 208 ---IDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 208 ---~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
.-|..+.+.++. ++..+.++++ ++.|.+++..+.+.|+|+|.+... .+...+.+..+....+ .+|++
T Consensus 78 ~~i~~p~~~~~~~~~-~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p~~ 147 (190)
T cd00452 78 QFIVSPGLDPEVVKA-ANRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVRFM 147 (190)
T ss_pred CEEEcCCCCHHHHHH-HHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCeEE
Confidence 012233344444 4445777665 778999999999999999998431 1124556666665553 59999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
+.||| +.+++.+.+++||++|.+|+.+.
T Consensus 148 a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 148 PTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred EeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 99999 99999999999999999999876
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-07 Score=84.05 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.+.+.++++.+.++|++.|.|.|+- +.+-..++....++...++.++.+|+.+||.+.+|+.++...|+|+|.||+.
T Consensus 164 EVh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~ 240 (254)
T PF00218_consen 164 EVHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEA 240 (254)
T ss_dssp EESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHH
T ss_pred EECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHH
Confidence 3566777777777777777666532 3333344555556666666678999999999999999999999999999999
Q ss_pred cccCcchhh
Q 020636 312 PCQCPLTEK 320 (323)
Q Consensus 312 ~~~~~~~~~ 320 (323)
|+..++-.+
T Consensus 241 lm~~~d~~~ 249 (254)
T PF00218_consen 241 LMRSPDPGE 249 (254)
T ss_dssp HHTSSSHHH
T ss_pred HhCCCCHHH
Confidence 999987654
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=86.01 Aligned_cols=100 Identities=27% Similarity=0.397 Sum_probs=77.5
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------CC------------C-------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------HG------------A------- 257 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~g------------g------- 257 (323)
+++.|+.+.+.++.|+.+. |+.+.++++.+.++|++.|+++. +| |
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~g 140 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNG 140 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETT
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecC
Confidence 4678899999999999998 57999999999999999998832 01 1
Q ss_pred -CC---------------------------CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 258 -RQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 258 -~~---------------------------~~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
.. .+| ..+.++++.++.+.+ ++|||++|||++.+|+.++...|+++|.
T Consensus 141 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvi 218 (229)
T PF00977_consen 141 WQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVI 218 (229)
T ss_dssp TTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEE
T ss_pred ccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEE
Confidence 00 022 246788888888888 8999999999999999999999999999
Q ss_pred Ecccccc
Q 020636 308 VSIMPCQ 314 (323)
Q Consensus 308 iG~~~~~ 314 (323)
+|++|..
T Consensus 219 vg~al~~ 225 (229)
T PF00977_consen 219 VGSALHE 225 (229)
T ss_dssp ESHHHHT
T ss_pred EehHhhC
Confidence 9999853
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-06 Score=80.04 Aligned_cols=85 Identities=21% Similarity=0.199 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.+.+.++++++.++|++.|-|.|+. +.+-..++....++...++.+..+|+.|||+|++|+.++... +|+|.||+.
T Consensus 157 EVh~~~El~~a~~~ga~iiGINnRd---L~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~ 232 (247)
T PRK13957 157 EVHTEDEAKLALDCGAEIIGINTRD---LDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTY 232 (247)
T ss_pred EECCHHHHHHHHhCCCCEEEEeCCC---CccceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHH
Confidence 3566677777777777766666543 222233445555666667767889999999999999997776 999999999
Q ss_pred cccCcchhh
Q 020636 312 PCQCPLTEK 320 (323)
Q Consensus 312 ~~~~~~~~~ 320 (323)
++..++-.+
T Consensus 233 lm~~~d~~~ 241 (247)
T PRK13957 233 FMEKKDIRK 241 (247)
T ss_pred HhCCCCHHH
Confidence 999887443
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=84.46 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=61.9
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-CCCEEEEccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFVSIMPC 313 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l-GAd~V~iG~~~~ 313 (323)
+.+.++.+.+.|+|.|++++..... ......++.+.++.+.+ ++||+++|||++.+|+.+++.. |||+|++||+|.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g-~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDG-TKKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCC-CCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHH
Confidence 4566789999999999996533211 11234688888888877 8999999999999999999997 999999999885
Q ss_pred c
Q 020636 314 Q 314 (323)
Q Consensus 314 ~ 314 (323)
.
T Consensus 228 ~ 228 (243)
T cd04731 228 F 228 (243)
T ss_pred c
Confidence 4
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-06 Score=77.25 Aligned_cols=165 Identities=18% Similarity=0.172 Sum_probs=103.9
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh----h
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA----G 206 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 206 (323)
...+.+...+.++.+-+.|++.+-+|.+.|..-..-+.++..+. ..+.+ + .|.+.. ...+..... .
T Consensus 17 r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~--~~~~i----G--aGTV~~--~~~~~~a~~aGA~f 86 (206)
T PRK09140 17 RGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG--DRALI----G--AGTVLS--PEQVDRLADAGGRL 86 (206)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC--CCcEE----e--EEecCC--HHHHHHHHHcCCCE
Confidence 34567777777777778888888888877753333344444442 11110 0 000000 000000000 0
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
-.-|..+.+.++..+ ..+.+++. |+.|++++..+.+.|+|+|.+.-. ....++.+++++..++.++|+++.
T Consensus 87 ivsp~~~~~v~~~~~-~~~~~~~~-G~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvvai 157 (206)
T PRK09140 87 IVTPNTDPEVIRRAV-ALGMVVMP-GVATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFAV 157 (206)
T ss_pred EECCCCCHHHHHHHH-HCCCcEEc-ccCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEEE
Confidence 112445555556554 44655544 589999999999999999997321 122366777777666435999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
||| +.+++.+.+++||++|.+|+.++..
T Consensus 158 GGI-~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 158 GGV-TPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred CCC-CHHHHHHHHHCCCeEEEEehHhccc
Confidence 999 8899999999999999999999764
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-07 Score=82.85 Aligned_cols=167 Identities=20% Similarity=0.238 Sum_probs=102.1
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc-----------cchh
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA-----------NDSG 199 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 199 (323)
+....+.+.++++++.+.++.+++++ |..-...++.-. ..++.+..+.+||.|..... .|+.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~---p~~v~~a~~~l~----~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAd 85 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVN---PSYVPLAKELLK----GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGAD 85 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeC---HHHHHHHHHHcC----CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 34567788888999999999998875 332222222211 12455556667777653210 0000
Q ss_pred hHHHHhh-----ccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcc
Q 020636 200 LAAYVAG-----QIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPA 265 (323)
Q Consensus 200 ~~~~~~~-----~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~ 265 (323)
-.+.+.+ .++.....++++++++..+ .+.+|.+ ++.++ ++.+.++|+|.|..|..-+ ....
T Consensus 86 EiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~ga 160 (211)
T TIGR00126 86 EVDMVINIGALKDGNEEVVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGGA 160 (211)
T ss_pred EEEeecchHhhhCCcHHHHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCC
Confidence 0001100 1222334567888887764 3345533 44343 5677899999999974211 1235
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.+.+..+.+.++++++|-++||||+.+|+++++++||+.++..
T Consensus 161 t~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 161 TVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred CHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcc
Confidence 56666666666666899999999999999999999999977543
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.4e-07 Score=80.47 Aligned_cols=101 Identities=26% Similarity=0.369 Sum_probs=81.1
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc-------------------------------------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS------------------------------------- 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs------------------------------------- 253 (323)
...+.++++.+.+.+|+.|. |+.+.+|+++++.+|||-|.+.
T Consensus 61 ~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~ 140 (256)
T COG0107 61 TMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENG 140 (256)
T ss_pred hHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCC
Confidence 34677888888889999998 5799999999999999999761
Q ss_pred -----CCCCCC---C------------------------CCCc--chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH
Q 020636 254 -----NHGARQ---L------------------------DYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 299 (323)
Q Consensus 254 -----~~gg~~---~------------------------~~~~--~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal 299 (323)
.|||+. + |+.. =.++++..+.+.+ ++|||++||..+.+|+.+++
T Consensus 141 ~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf 218 (256)
T COG0107 141 WYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAF 218 (256)
T ss_pred cEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHH
Confidence 123331 1 2222 2467888888888 89999999999999999999
Q ss_pred HcC-CCEEEEcccccc
Q 020636 300 ALG-ASGIFVSIMPCQ 314 (323)
Q Consensus 300 ~lG-Ad~V~iG~~~~~ 314 (323)
..| ||++..++.|..
T Consensus 219 ~~~~adAaLAAsiFH~ 234 (256)
T COG0107 219 TEGKADAALAASIFHF 234 (256)
T ss_pred HhcCccHHHhhhhhhc
Confidence 988 999999988854
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=78.24 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=107.0
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchHHHH---hhccCCCCccccccccccccCCCc--c--ccchhhHHHHhhccCCccC
Q 020636 141 LVRRAERAGFKAIALTVDTPRLGRREADI---KNRFTLPPFLTLKNFQGLDLGKMD--E--ANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 141 ~~~~a~~~G~~al~itvd~p~~g~r~~d~---~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~ 213 (323)
.++.-++.|+.+|-|..|.+++.-..+++ +....+|- ...+|...+.+ . ..|+...-.+... ++
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~Pv-----L~KDFiiD~yQI~~Ar~~GADavLLI~~~----L~ 141 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPV-----LRKDFIIDPYQIYEARAAGADAVLLIVAA----LD 141 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCe-----eeccCCCCHHHHHHHHHcCcccHHHHHHh----cC
Confidence 45666788999999999988885444444 34344430 01233222211 0 0111111111111 22
Q ss_pred HHHHHHH---HHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 214 WKDVKWL---QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 214 ~~~i~~i---~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
-+.++++ .+..+.-+++ .+.+.++++++.+.|++.|-+-|+.-+ +-..+++....+....+.+.-+|..+||.
T Consensus 142 ~~~l~el~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~---tf~vdl~~t~~la~~~p~~~~~IsESGI~ 217 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLT---TLEVDLETTEKLAPLIPKDVILISESGIS 217 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcc---hheecHHHHHHHHhhCCCCcEEEecCCCC
Confidence 2333333 3334554433 578999999999999999999875433 23334555566666677678999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+++|+.+....||+++.||+.|+.+++..+
T Consensus 218 ~~~dv~~l~~~ga~a~LVG~slM~~~~~~~ 247 (254)
T COG0134 218 TPEDVRRLAKAGADAFLVGEALMRADDPEE 247 (254)
T ss_pred CHHHHHHHHHcCCCEEEecHHHhcCCCHHH
Confidence 999999999999999999999999987654
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.5e-07 Score=81.19 Aligned_cols=102 Identities=29% Similarity=0.342 Sum_probs=79.6
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC--------------CCC-CC---CC-----------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN--------------HGA-RQ---LD----------- 261 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~--------------~gg-~~---~~----------- 261 (323)
.+.+.++.+.+.+++|+.+. |+.+.|+++.++++||+.+++.. +|. +- +|
T Consensus 65 ~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~ 144 (233)
T cd04723 65 DNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTD 144 (233)
T ss_pred ccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccC
Confidence 45778889988888999888 57899999999999999998743 221 10 00
Q ss_pred ----------------------------CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 262 ----------------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 262 ----------------------------~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
...+.++.+.++.+.+ .+||++.|||+|.+|+.+++.+||++|.+|++|.
T Consensus 145 ~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~ 222 (233)
T cd04723 145 FIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALH 222 (233)
T ss_pred cCCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHH
Confidence 0123455666666655 7999999999999999999999999999999886
Q ss_pred cC
Q 020636 314 QC 315 (323)
Q Consensus 314 ~~ 315 (323)
..
T Consensus 223 ~g 224 (233)
T cd04723 223 DG 224 (233)
T ss_pred cC
Confidence 43
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.1e-07 Score=78.29 Aligned_cols=97 Identities=23% Similarity=0.215 Sum_probs=71.2
Q ss_pred HHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC-CC-CCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 217 VKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-LD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 217 i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
++.+|+.++ ..|.+ .+.+.++++.+.+.|+|+|.++.-..+. .. ..+..++.+.++.+.+ ++||++.||| +.+
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 344555443 33333 5678999999999999999765322221 11 1233567888887776 7999999999 999
Q ss_pred HHHHHHHcCCCEEEEccccccCcc
Q 020636 294 DVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
++.+++.+||++|.+|+.+...++
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~~~~ 185 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFSSAN 185 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhcCCC
Confidence 999999999999999999986544
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.9e-07 Score=80.39 Aligned_cols=75 Identities=28% Similarity=0.280 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH-HHHcCCCEEEEccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFVSIMPC 313 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k-al~lGAd~V~iG~~~~ 313 (323)
.+.++.+.+.|+|.|++++...... .....++.+.++++.+ ++||+++|||++.+|+.+ +...||++|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~-~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGT-MKGYDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCC-cCCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 5668999999999999976332111 1234788999998887 799999999999999999 5569999999999873
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.9e-06 Score=73.26 Aligned_cols=170 Identities=16% Similarity=0.145 Sum_probs=111.6
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+-+....+.+...+.++.+.+.|++.+-||.++|..-.--+.++..| | .+.+ + .+.+.+ .........
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~-~~~v----G--AGTVl~--~~~a~~a~~ 78 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--P-DALI----G--AGTVLN--PEQLRQAVD 78 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--C-CCEE----E--EEeCCC--HHHHHHHHH
Confidence 334444567888888888889999999999999886544445555544 2 1111 0 011000 000001110
Q ss_pred ----hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 206 ----GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 206 ----~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
.-..|.++.+.+++.++ .++|.+- |++|+-|+..+.++|+|.|.+.-.+ .-+++ ..++.++.-++ ++
T Consensus 79 aGA~FivsP~~~~~v~~~~~~-~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~---~yikal~~plp-~i 149 (204)
T TIGR01182 79 AGAQFIVSPGLTPELAKHAQD-HGIPIIP-GVATPSEIMLALELGITALKLFPAE---VSGGV---KMLKALAGPFP-QV 149 (204)
T ss_pred cCCCEEECCCCCHHHHHHHHH-cCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch---hcCCH---HHHHHHhccCC-CC
Confidence 01236667777777665 4777655 8999999999999999999995421 00112 34444444443 79
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+++..|||.- +.+.+.|.+|+.+|++|+.++...
T Consensus 150 ~~~ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 150 RFCPTGGINL-ANVRDYLAAPNVACGGGSWLVPKD 183 (204)
T ss_pred cEEecCCCCH-HHHHHHHhCCCEEEEEChhhcCch
Confidence 9999999976 899999999999999999887644
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-06 Score=77.85 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=95.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+.+.++++.+.+.|++.|-+.+ |..- | ...||.- ..+..+.+....+..
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElGi--PfSD------------P----------~aDGpvI---q~a~~rAL~~g~~~~ 77 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELGI--PYSD------------P----------LADGPII---QEASNRALKQGINLN 77 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--CCCC------------C----------CccCHHH---HHHHHHHHHcCCCHH
Confidence 34678888999999999999887654 5420 1 0011110 001111222222333
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCC-------HHHHHHHHHcCCCEEEEcC---------------CCC---------CC-
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------RQ- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~---------------~gg---------~~- 259 (323)
..++.++++|+..+.|+++=+=.+ ..-.+.+.++|+|++++.- ||= +.
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~ 157 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSK 157 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 457788888877788865332111 2337888899999998722 110 00
Q ss_pred ---------------------CCCC----cc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 260 ---------------------LDYV----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 260 ---------------------~~~~----~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
..|. +. ..+.+..+++.. +.||.+.+||++++++.++...|||+|.+|++++
T Consensus 158 eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 158 SRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0011 11 124455555555 7999999999999999999999999999999994
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.4e-06 Score=73.38 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=56.3
Q ss_pred CHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+..+..+....++|+|.+... |++.....+..++.+.++++.++ ..+|++++|||+ .+.+.+++..|||++.+|
T Consensus 115 t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivg 193 (210)
T TIGR01163 115 TPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAG 193 (210)
T ss_pred CCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEC
Confidence 334444444557888765321 11111122344556666665542 137999999996 699999999999999999
Q ss_pred cccccCcchhhh
Q 020636 310 IMPCQCPLTEKI 321 (323)
Q Consensus 310 ~~~~~~~~~~~~ 321 (323)
++++..++.++.
T Consensus 194 sai~~~~d~~~~ 205 (210)
T TIGR01163 194 SAIFGADDYKEV 205 (210)
T ss_pred hHHhCCCCHHHH
Confidence 999988876553
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=80.71 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH-HcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal-~lGAd~V~iG~~~~~ 314 (323)
.+-++.+.+.|++.+++.+...-+...+ +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|..
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 4557888899999999864332112223 5899999999887 89999999999999999999 799999999999977
Q ss_pred C
Q 020636 315 C 315 (323)
Q Consensus 315 ~ 315 (323)
.
T Consensus 232 ~ 232 (258)
T PRK01033 232 K 232 (258)
T ss_pred C
Confidence 5
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.3e-07 Score=80.88 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=78.6
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC--------------CCCC-------------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN--------------HGAR------------------- 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~--------------~gg~------------------- 258 (323)
+.+.++++.+.+ .|+.+. |+.+.++++.++++|++.|++.. +|.+
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 567888888877 799888 57899999999999999988742 1100
Q ss_pred --CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-----C-CC
Q 020636 259 --QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-AS 304 (323)
Q Consensus 259 --~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l-----G-Ad 304 (323)
.. |+ ..+.++++.++.+.. ++|||++|||++.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 00 12 245778888888776 8999999999999999999987 6 99
Q ss_pred EEEEcccccc
Q 020636 305 GIFVSIMPCQ 314 (323)
Q Consensus 305 ~V~iG~~~~~ 314 (323)
+|.+|++|..
T Consensus 219 gvivg~Al~~ 228 (241)
T PRK14114 219 GVIVGRAFLE 228 (241)
T ss_pred EEEEehHHHC
Confidence 9999999854
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.8e-06 Score=86.77 Aligned_cols=167 Identities=20% Similarity=0.224 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchHHHHh---hccCCCCccccccc-cccccCCCc--cc--cchhhHHHHhhccCCc
Q 020636 140 QLVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNF-QGLDLGKMD--EA--NDSGLAAYVAGQIDRS 211 (323)
Q Consensus 140 ~~~~~a~~~G~~al~itvd~p~~g~r~~d~~---~~~~~~~~~~~~~~-~~~~~~~~~--~~--~~~~~~~~~~~~~~~~ 211 (323)
++++.-++.|+.+|-|..|...++-...+++ ....+| .+ .++...+.+ .. .++...-.+.. -
T Consensus 74 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~P------vLrKDFIid~~QI~ea~~~GADavLLI~~----~ 143 (695)
T PRK13802 74 ALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIP------VLRKDFIVTDYQIWEARAHGADLVLLIVA----A 143 (695)
T ss_pred HHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCC------EEeccccCCHHHHHHHHHcCCCEeehhHh----h
Confidence 4556677899999999989888765555543 322333 11 122222211 00 01100001111 1
Q ss_pred cCHHHHHHHH---HhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 212 LSWKDVKWLQ---TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 212 ~~~~~i~~i~---~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.-+.++.+. +..++-.+| .+.+.++++++.++|++.|-|-|+. +.+-..+++...++...++.++.+|+.+|
T Consensus 144 L~~~~l~~l~~~a~~lGme~Lv-Evh~~~el~~a~~~ga~iiGINnRd---L~tf~vd~~~t~~L~~~ip~~~~~VsESG 219 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLV-ETHTREEIERAIAAGAKVIGINARN---LKDLKVDVNKYNELAADLPDDVIKVAESG 219 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCC---CccceeCHHHHHHHHhhCCCCcEEEEcCC
Confidence 2223344433 334554443 5789999999999999999887753 33333445555566666666788999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
|++++|+..+..+|||+|.||+.|+..++-.+
T Consensus 220 I~~~~d~~~l~~~G~davLIGeslm~~~dp~~ 251 (695)
T PRK13802 220 VFGAVEVEDYARAGADAVLVGEGVATADDHEL 251 (695)
T ss_pred CCCHHHHHHHHHCCCCEEEECHHhhCCCCHHH
Confidence 99999999999999999999999999887543
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-05 Score=69.86 Aligned_cols=178 Identities=16% Similarity=0.100 Sum_probs=110.5
Q ss_pred CcHHHHHHHHHHHHcCCcee-ecC-C----CCCCHHHHHhcCCC-ceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 020636 86 HPEGEYATARAASAAGTIMT-LSS-W----STSSVEEVASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (323)
Q Consensus 86 ~~~~e~~~a~aa~~~G~~~~-vs~-~----s~~~~eei~~~~~~-~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd 158 (323)
+++.-+.+++++ +.|+..+ +++ + ....++++++..++ ...+-+.. .|++. ..++++.++|++.+.++.-
T Consensus 10 ~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~-~d~~~--~~~~~~~~~Gad~i~vh~~ 85 (206)
T TIGR03128 10 DIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKT-MDAGE--YEAEQAFAAGADIVTVLGV 85 (206)
T ss_pred CHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEee-ccchH--HHHHHHHHcCCCEEEEecc
Confidence 444456788888 6676544 431 1 12346667666542 23333322 24442 2467788899998876532
Q ss_pred CCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc--C-C
Q 020636 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--L-T 235 (323)
Q Consensus 159 ~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i--~-~ 235 (323)
++. ....+.++++++ .+.++.+... . .
T Consensus 86 ~~~-------------------------------------------------~~~~~~i~~~~~-~g~~~~~~~~~~~t~ 115 (206)
T TIGR03128 86 ADD-------------------------------------------------ATIKGAVKAAKK-HGKEVQVDLINVKDK 115 (206)
T ss_pred CCH-------------------------------------------------HHHHHHHHHHHH-cCCEEEEEecCCCCh
Confidence 210 001234555555 5778776532 2 3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++++.+.+.|+|.|.+.. |.......+..++.+.++++.++ ..++.++||| +.+.+.+++..||+.+.+||.++..
T Consensus 116 ~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 116 VKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred HHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcCC
Confidence 5888999999999998742 21111122345667777776664 4667779999 8889999999999999999999887
Q ss_pred cchhh
Q 020636 316 PLTEK 320 (323)
Q Consensus 316 ~~~~~ 320 (323)
++.++
T Consensus 193 ~d~~~ 197 (206)
T TIGR03128 193 ADPAE 197 (206)
T ss_pred CCHHH
Confidence 66443
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=9e-08 Score=89.09 Aligned_cols=222 Identities=17% Similarity=0.166 Sum_probs=141.1
Q ss_pred ccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-----------------
Q 020636 49 RPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------------- 111 (323)
Q Consensus 49 ~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~----------------- 111 (323)
.|..|.-+++++.+++..|+++++||.++. ..|.....+.+-|-..|.++.+.---.
T Consensus 91 ~~k~~~~l~~ie~~vd~~G~k~~npf~~~s------~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~ 164 (471)
T KOG1799|consen 91 GLKALLYLKSIEELVDWDGQKPANPFHQKS------KPPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSP 164 (471)
T ss_pred chhhhcchhhhhhhccccCccCCCccccCC------CCCCccHHHHHhhhhcccchhheeeeecchhhheecccceeecc
Confidence 355566788999999999999999999875 233345578888888888887653100
Q ss_pred ----C---------CHHHHH---------------hcCCCce-e---EEeeecCChHHHHHHHHHHHHcCCcEEEEecCC
Q 020636 112 ----S---------SVEEVA---------------STGPGIR-F---FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (323)
Q Consensus 112 ----~---------~~eei~---------------~~~~~~~-~---~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~ 159 (323)
+ .+|-|. ...|... + +-+| +..-..++..+.+++|++.+-+++.|
T Consensus 165 t~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciy---nk~~w~el~d~~eqag~d~lE~nlsc 241 (471)
T KOG1799|consen 165 TKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIY---NKKCWMELNDSGEQAGQDDLETNLSC 241 (471)
T ss_pred CCCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHh---hhhhHHHHhhhHHhhcccchhccCCC
Confidence 0 011111 1111000 0 0011 12223456677777888888888887
Q ss_pred CCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH---
Q 020636 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA--- 236 (323)
Q Consensus 160 p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~--- 236 (323)
|+. --++ ++.+. -..+|...-|.-.|++....+|++-|...+.
T Consensus 242 phg-m~er----------gmgla-----------------------~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~ 287 (471)
T KOG1799|consen 242 PHG-MCER----------GMGLA-----------------------LGQCPIVDCEVCGWINAKATIPMVSKMTPNITDK 287 (471)
T ss_pred CCC-Cccc----------cccce-----------------------eccChhhhHHHhhhhhhccccccccccCCCcccc
Confidence 762 1110 11110 0125666778899999999999999976543
Q ss_pred -HHHHHHHHcCCCEEEEcCCC------------------CCCCCC-------CcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 237 -EDARIAVQAGAAGIIVSNHG------------------ARQLDY-------VPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 237 -e~a~~~~~~Gad~i~vs~~g------------------g~~~~~-------~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
|-|+.+.+.||.+|...|.- |+.-.+ .|..+..+-.|++... ..|+.+.|||.
T Consensus 288 revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvE 366 (471)
T KOG1799|consen 288 REVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVE 366 (471)
T ss_pred cccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCcc
Confidence 44777888999998764420 111111 2334445555666554 68999999999
Q ss_pred CHHHHHHHHHcCCCEEEEcccccc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
++.|.+..|.+|++.|++++..+.
T Consensus 367 t~~~~~~Fil~Gs~~vQVCt~V~~ 390 (471)
T KOG1799|consen 367 TGYDAAEFILLGSNTVQVCTGVMM 390 (471)
T ss_pred cccchhhHhhcCCcHhhhhhHHHh
Confidence 999999999999999999987654
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=79.71 Aligned_cols=100 Identities=16% Similarity=0.006 Sum_probs=77.9
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------C------------CC---C---
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------H------------GA---R--- 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------~------------gg---~--- 258 (323)
+.+.++.+.+.++.|+.+. |+.+.++++.+++.|+|.|++.. + .| .
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 4668888988888999888 67999999999999999998732 1 11 0
Q ss_pred ------CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH---HcCC
Q 020636 259 ------QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGA 303 (323)
Q Consensus 259 ------~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal---~lGA 303 (323)
.. || ..+.++++.++.+.. ++|||++|||++.+|+.+.- ..|+
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv 219 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGV 219 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCe
Confidence 00 11 245667777777765 79999999999999999864 3599
Q ss_pred CEEEEcccccc
Q 020636 304 SGIFVSIMPCQ 314 (323)
Q Consensus 304 d~V~iG~~~~~ 314 (323)
++|.+|++|..
T Consensus 220 ~gvivg~Al~~ 230 (243)
T TIGR01919 220 SVAIGGKLLYA 230 (243)
T ss_pred eEEEEhHHHHc
Confidence 99999998854
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-06 Score=78.50 Aligned_cols=102 Identities=25% Similarity=0.251 Sum_probs=74.2
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCCC-------------CCC---CC--------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHG-------------ARQ---LD-------------- 261 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~g-------------g~~---~~-------------- 261 (323)
+.+.++++.+.++.|+++. |+.+.+|++.+.+.|++.+++.... |+- +|
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 5677888888889999988 6799999999999999999883211 000 00
Q ss_pred CCcchHHHHHHH------------------------HHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 262 YVPATIMALEEV------------------------VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 262 ~~~~~~~~l~~i------------------------~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.....++++.++ .+.. .++|||++|||++.+|+.++..+|+++|.+|++|...
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 011122322222 2221 2689999999999999999999999999999998543
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.45 E-value=8e-06 Score=74.73 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=95.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+.+.++++...+.|++.|-+.+ |..- | ...||.- ..+..+.+....+..
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElGi--PfSD------------P----------~aDGpvI---q~a~~rAL~~G~~~~ 64 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELGV--PYSD------------P----------LADGPVI---QAAATRALEKGTTLD 64 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--CCCC------------C----------cccCHHH---HHHHHHHHHcCCCHH
Confidence 34678888989989999999887544 5420 1 0011110 001111222222333
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCC-------HHHHHHHHHcCCCEEEEcC---------------CCC---------C--
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------R-- 258 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~---------------~gg---------~-- 258 (323)
..++.++++|+..+.|+++=+=.+ .+-.+.+.++|+|++++-. ||= +
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~ 144 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPT 144 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH
Confidence 457788888877778865432211 2236788889999887721 100 0
Q ss_pred -------------------C-CCC---C-cchH-HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 259 -------------------Q-LDY---V-PATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 259 -------------------~-~~~---~-~~~~-~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
. ..+ . +..+ +.+..+++.. ++||+.--||++++|+.+++..|||+|.+|++|+
T Consensus 145 ~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 145 ERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0 001 1 2223 4466676654 8999998899999999999999999999999985
Q ss_pred c
Q 020636 314 Q 314 (323)
Q Consensus 314 ~ 314 (323)
.
T Consensus 223 k 223 (250)
T PLN02591 223 K 223 (250)
T ss_pred H
Confidence 4
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.8e-07 Score=80.34 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-++.+.+.|+|.+.+.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||++|++|+.++..
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~ 106 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVEN 106 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhC
Confidence 4668888899999988865432 1123456788899998887 799999999999999999999999999999999998
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|++
T Consensus 107 p~~ 109 (243)
T cd04731 107 PEL 109 (243)
T ss_pred hHH
Confidence 875
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=80.31 Aligned_cols=80 Identities=23% Similarity=0.256 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+.+.+.|+|.+.+.+.-+. .......++.+.++.+.+ ++||+++|||+|.+|+.+++.+||+.|++||.++.+
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~ 109 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKN 109 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence 46688888999999998764321 123456788999999888 799999999999999999999999999999999988
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|+.
T Consensus 110 p~~ 112 (254)
T TIGR00735 110 PEL 112 (254)
T ss_pred hHH
Confidence 863
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-05 Score=69.72 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=71.2
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+..++++ .++..+.+.++. +.|++++..+.+.|+|+|.+.- . ......+.++.++..++ ++|+++.||| +
T Consensus 93 ~~~~~~~-~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fp--t----~~~~G~~~l~~~~~~~~-~ipvvaiGGI-~ 162 (187)
T PRK07455 93 VDPELIE-AAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFP--V----QAVGGADYIKSLQGPLG-HIPLIPTGGV-T 162 (187)
T ss_pred CCHHHHH-HHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECc--C----CcccCHHHHHHHHhhCC-CCcEEEeCCC-C
Confidence 4444444 445556676665 8999999999999999999832 1 11224677777777663 5999999999 7
Q ss_pred HHHHHHHHHcCCCEEEEcccccc
Q 020636 292 GTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+++...++.||++|.+++.++.
T Consensus 163 ~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 163 LENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHHHHCCCeEEEEehhccc
Confidence 79999999999999999998864
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-05 Score=73.36 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+.+.+.+.+++++++|++.+-+.+ |..- .+.++..+.+ ...+.+....+...
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--Pfsd----------Pv~DG~~I~~---------------a~~~al~~g~~~~~ 63 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSD----------PVADGPVIQA---------------ASERALANGVTLKD 63 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCC----------CCCCCHHHHH---------------HHHHHHHcCCCHHH
Confidence 3567778889999999999887654 5420 0000100000 00011111122234
Q ss_pred CHHHHHHHHHhcCCCEEEeccCC-------HHHHHHHHHcCCCEEEEcC---------------CCC---------CC--
Q 020636 213 SWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------RQ-- 259 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~---------------~gg---------~~-- 259 (323)
.++.++++|+..+.|+++=.-.+ ..-++.+.++|+|++++.. +|- +.
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~ 143 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDE 143 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 56778888877677765411112 3346777888888887711 110 00
Q ss_pred ---------C-----------CCC-----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 260 ---------L-----------DYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 260 ---------~-----------~~~-----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
. .++ ....+.+.++++.. ++||+++|||++.+++.++... ||+|.+|+.++.
T Consensus 144 ~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 144 RIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred HHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 0 011 22345677777654 7999999999999999999999 999999998854
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.7e-06 Score=76.99 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=113.1
Q ss_pred HHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhh---c-cCCCCccccccc-cccc
Q 020636 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN---R-FTLPPFLTLKNF-QGLD 188 (323)
Q Consensus 114 ~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~---~-~~~~~~~~~~~~-~~~~ 188 (323)
+.|+.++.|...++. ...|+. ++.+.-++.|+.+|-|-.|..+++-...+++. . ..+| .+ .+|-
T Consensus 122 IAEvKrASPSkG~I~--~~~dp~---~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lP------vLrKDFI 190 (338)
T PLN02460 122 IAEVKKASPSRGVLR--ENFDPV---EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCP------LLCKEFI 190 (338)
T ss_pred EeeeccCCCCCCccC--CCCCHH---HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCC------Eeecccc
Confidence 345556666333322 233553 45566678999999998898888655555543 2 3333 11 1232
Q ss_pred cCCCc----cccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHc-CCCEEEEcCCCCCCCCCC
Q 020636 189 LGKMD----EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYV 263 (323)
Q Consensus 189 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~-Gad~i~vs~~gg~~~~~~ 263 (323)
..+.+ ...|+...-.+....+ +...+.+-.+.+..+.-++| .+.+.+++.+++++ |++.|-|.|+. +.+-
T Consensus 191 ID~yQI~eAr~~GADAVLLIaaiL~-~~~L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRd---L~Tf 265 (338)
T PLN02460 191 VDAWQIYYARSKGADAILLIAAVLP-DLDIKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRS---LETF 265 (338)
T ss_pred CCHHHHHHHHHcCCCcHHHHHHhCC-HHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCC---CCcc
Confidence 22211 0111111111111111 11233333344445654443 57899999999998 99999998754 3332
Q ss_pred cchHHHHHHHHH-----Hh-cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 264 PATIMALEEVVK-----AT-QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 264 ~~~~~~l~~i~~-----~~-~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
..+++...++.. .+ +.++-+++.+||++++|+..+..+|||+|.||..|+..++-.+
T Consensus 266 ~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~ 328 (338)
T PLN02460 266 EVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGK 328 (338)
T ss_pred eECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHH
Confidence 333443334433 23 2356789999999999999999999999999999999887543
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=80.04 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+.+.+.|++.+.+.+.... ..+.+..++.++++.+.+ ++||+++|||+|.+|+.+++..||+.|++|+.++.+
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~-~~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~ 109 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITAS-SEGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVAN 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-cccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence 46688888999999999764432 123467889999999888 799999999999999999999999999999999988
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|+
T Consensus 110 p~ 111 (253)
T PRK02083 110 PE 111 (253)
T ss_pred cH
Confidence 86
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-05 Score=68.55 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=113.5
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+-+....+.+...++++.+.+.|++.+-||.++|..-.--+.++..|.-.+.+.+ +. |.+.+. ........
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~v----Ga--GTV~~~--~~~~~a~~ 86 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLI----GA--GTVLDA--VTARLAIL 86 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEE----ee--eeCCCH--HHHHHHHH
Confidence 34444466788888888888899999999999988754445556555421011111 10 110000 00000100
Q ss_pred ----hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 206 ----GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 206 ----~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
.-..|.++.+.+++.++ .++|++ =|+.|+.++..+.+.|+|+|.+.-.. ....+.++.++..++ .+
T Consensus 87 aGA~FivsP~~~~~v~~~~~~-~~i~~i-PG~~T~~E~~~A~~~Gad~vklFPa~-------~~G~~~ik~l~~~~p-~i 156 (213)
T PRK06552 87 AGAQFIVSPSFNRETAKICNL-YQIPYL-PGCMTVTEIVTALEAGSEIVKLFPGS-------TLGPSFIKAIKGPLP-QV 156 (213)
T ss_pred cCCCEEECCCCCHHHHHHHHH-cCCCEE-CCcCCHHHHHHHHHcCCCEEEECCcc-------cCCHHHHHHHhhhCC-CC
Confidence 11246677778887665 477654 47899999999999999999984211 112455666666553 69
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
|+++.|||. .+.+.+.+++||++|.+|+.++..
T Consensus 157 p~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 157 NVMVTGGVN-LDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred EEEEECCCC-HHHHHHHHHCCCcEEEEchHHhCc
Confidence 999999997 699999999999999999988654
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-06 Score=76.26 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=72.3
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHH--cCCCEEEEcCC--------------------CCC----CC-----
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQ--AGAAGIIVSNH--------------------GAR----QL----- 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~--~Gad~i~vs~~--------------------gg~----~~----- 260 (323)
+.+.|+++.+. .|+.+. |+.+.|+++.+.. .||+.|++..- +++ .+
T Consensus 67 n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~~~vvslD~~~g~v~~~g~~~~~~ 144 (221)
T TIGR00734 67 NFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDITELLRECYTVVSLDFKEKFLDASGLFESLE 144 (221)
T ss_pred hHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCCHHHHHHhhhEEEEEeECCccccccccccHH
Confidence 46677777776 377777 5688888887755 25888876321 111 00
Q ss_pred --------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 261 --------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 261 --------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
++ ..+.++++.++.+.+ ++|||++|||+|.+|+.++..+||++|.+|++|..
T Consensus 145 ~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 145 EVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 11 245688888888876 79999999999999999988899999999998853
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-05 Score=71.08 Aligned_cols=100 Identities=18% Similarity=0.081 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCEEE--eccCCHHHHHHHHHcCCCEEEEc-CCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVS-NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~v--K~i~~~e~a~~~~~~Gad~i~vs-~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.++.+++ .+.++++ =+..|++++..+.+.|+|.+.+. ++.+... +.+...+.++++.+.. ++|++++|||+ .
T Consensus 95 ~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~-~~~~~~~~i~~~~~~~--~~~i~~~GGI~-~ 169 (202)
T cd04726 95 AVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAA-GGWWPEDDLKKVKKLL--GVKVAVAGGIT-P 169 (202)
T ss_pred HHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccccc-CCCCCHHHHHHHHhhc--CCCEEEECCcC-H
Confidence 4555554 4666665 46688999888899999998873 2111111 1244567777776653 79999999996 9
Q ss_pred HHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 293 TDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+++.+++..|||+|.+||.+...+++.+
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~~~~d~~~ 197 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAITGAADPAE 197 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhcCCCCHHH
Confidence 9999999999999999999988776644
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.37 E-value=4e-05 Score=66.67 Aligned_cols=174 Identities=22% Similarity=0.116 Sum_probs=112.7
Q ss_pred cHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCC---CceeEEeeecC---ChHHHHHHHHHHHHcCCcEEEEecCCC
Q 020636 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYK---DRNVVAQLVRRAERAGFKAIALTVDTP 160 (323)
Q Consensus 87 ~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~---~~~~~QLy~~~---d~~~~~~~~~~a~~~G~~al~itvd~p 160 (323)
.+.-..+++.+.+.|+..++-.. ..++.+.+..+ -+..+++.... ..+...+.+++++++|++++.+.. |
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~ 87 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--N 87 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--c
Confidence 34445788888888986654432 33444444332 24456654322 046667788899999999998753 2
Q ss_pred CCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh--cCCCEEEecc---C-
Q 020636 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI--TKLPILVKGV---L- 234 (323)
Q Consensus 161 ~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--~~~pv~vK~i---~- 234 (323)
.. + ....+.+...+.++.+++. .++|+++... .
T Consensus 88 ~~----------~-------------------------------~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~ 126 (201)
T cd00945 88 IG----------S-------------------------------LKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLK 126 (201)
T ss_pred HH----------H-------------------------------HhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCC
Confidence 10 0 0000112234567777777 4899999865 2
Q ss_pred CHHHHH----HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.+... .+.+.|+|+|..+.... .+...++.+.++.+..+.++|+++.||+.+..++..++.+||+++++|
T Consensus 127 ~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 127 TADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 455433 35689999999864211 122356677777776644679999999999999999999999999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=98.36 E-value=5e-06 Score=81.03 Aligned_cols=106 Identities=11% Similarity=-0.028 Sum_probs=72.9
Q ss_pred ccCHHHHHHHHHhcC-CCEEEeccCC-----------HH----HHHHHHHc------CCCEEEEcCCCCC---CCC---C
Q 020636 211 SLSWKDVKWLQTITK-LPILVKGVLT-----------AE----DARIAVQA------GAAGIIVSNHGAR---QLD---Y 262 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~-~pv~vK~i~~-----------~e----~a~~~~~~------Gad~i~vs~~gg~---~~~---~ 262 (323)
.+..|.|+.||+.++ -.|.+|.... .+ .++.+.+. |+|+|.||..... ... .
T Consensus 216 RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~ 295 (391)
T PLN02411 216 RFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRH 295 (391)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccccc
Confidence 466889999999984 2477775420 11 23444432 5999999863211 000 0
Q ss_pred Ccc--hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 263 VPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 263 ~~~--~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
... ......++++.+ ++|||+.||| +.+++.++|+.| ||.|.+||+|+.+|+|-
T Consensus 296 ~~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~ 352 (391)
T PLN02411 296 GSEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPDLV 352 (391)
T ss_pred CCccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCccHH
Confidence 111 113446677777 7899999999 679999999999 99999999999999874
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=70.31 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=110.9
Q ss_pred EEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccC--CCCccccccccccccCCCccccchhhHHHH
Q 020636 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 127 ~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
+=+....+.+...++++.+.+.|++.+-||.++|..-..-+.++..|. .| .+. .+. +.+.+ ........
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p-~~~----vGa--GTVl~--~e~a~~a~ 88 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELP-GMI----LGV--GSIVD--AATAALYI 88 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCC-CeE----Eee--EeCcC--HHHHHHHH
Confidence 334446788888888888899999999999999875444444443321 11 111 010 00000 00000111
Q ss_pred h----hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCC
Q 020636 205 A----GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 280 (323)
Q Consensus 205 ~----~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 280 (323)
. ....|.++.+.++..++ .++|+ +=|++|+.|+..+.++|++.|.+.-.+ ..+ ...++.+..-++ .
T Consensus 89 ~aGA~FiVsP~~~~~v~~~~~~-~~i~~-iPG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G---~~~ikal~~p~p-~ 158 (222)
T PRK07114 89 QLGANFIVTPLFNPDIAKVCNR-RKVPY-SPGCGSLSEIGYAEELGCEIVKLFPGS----VYG---PGFVKAIKGPMP-W 158 (222)
T ss_pred HcCCCEEECCCCCHHHHHHHHH-cCCCE-eCCCCCHHHHHHHHHCCCCEEEECccc----ccC---HHHHHHHhccCC-C
Confidence 0 11246677778887765 46654 457899999999999999999996321 012 344445444444 7
Q ss_pred CeEEEecCCCC-HHHHHHHHHcCCCEEEEccccccCc
Q 020636 281 IPVFLDGGVRR-GTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 281 ~pvia~GGI~~-~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
++++..|||.- .+++...+.+|+.+|++|+-++...
T Consensus 159 i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~ 195 (222)
T PRK07114 159 TKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKE 195 (222)
T ss_pred CeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCcc
Confidence 99999999995 5889999999999999999886433
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=72.55 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCCEEEe--ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 216 DVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK--~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
.++.+++. ++..++- -..+.+..+...+..-..++++-.+++.........+.+.++++... +.||+++|||++++
T Consensus 121 ~~~~~~~~-Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e 198 (244)
T PRK13125 121 YVEIIKNK-GLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPE 198 (244)
T ss_pred HHHHHHHc-CCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHH
Confidence 34555553 4443333 22457777887777655665553333211112223456777776653 47899999999999
Q ss_pred HHHHHHHcCCCEEEEcccccc
Q 020636 294 DVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~ 314 (323)
++.+++..|||++.+|+.++.
T Consensus 199 ~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 199 DARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred HHHHHHHcCCCEEEECHHHHH
Confidence 999999999999999999874
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.6e-06 Score=73.38 Aligned_cols=85 Identities=27% Similarity=0.265 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCC-cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQ--LDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~-~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.|.+++..+.+.|+|+|.++....+. .... +..++.+.++++..+ ++||++.||| +.+++.+++++||++|.+|
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGI-TPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 468899999999999999886422111 1111 123788888887762 3999999999 7899999999999999999
Q ss_pred cccccCcchh
Q 020636 310 IMPCQCPLTE 319 (323)
Q Consensus 310 ~~~~~~~~~~ 319 (323)
+.+..+++..
T Consensus 189 s~i~~~~d~~ 198 (212)
T PRK00043 189 SAITGAEDPE 198 (212)
T ss_pred HHhhcCCCHH
Confidence 9998776543
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.5e-06 Score=75.28 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=67.4
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCC-CCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
...++--|+++.++||..|.--+.. |+ ..+..+...|..|.+.. ++||+.++||.+++|+.+++++|||+|++.+
T Consensus 144 ~~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nS 219 (267)
T CHL00162 144 INADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNT 219 (267)
T ss_pred CCCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeecc
Confidence 3467888999999999998753211 11 11344566777777765 7999999999999999999999999999999
Q ss_pred ccccCcchhhh
Q 020636 311 MPCQCPLTEKI 321 (323)
Q Consensus 311 ~~~~~~~~~~~ 321 (323)
+....++..++
T Consensus 220 aIakA~dP~~m 230 (267)
T CHL00162 220 AVAQAKNPEQM 230 (267)
T ss_pred eeecCCCHHHH
Confidence 99887776554
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.4e-06 Score=81.24 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=71.4
Q ss_pred CCccCHHHHHHHHHhcCCCEEEeccC----CHHHHHHHHHcCCCEEEEcCCCCCCCC-CCcchHHHHHHHHHHhcCCCeE
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGVL----TAEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i~----~~e~a~~~~~~Gad~i~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~~pv 283 (323)
+|++..+.++++++.. +.+|... ..+-++.++++|+|.|++++..-.+.+ .+...+..+.++.+.+ ++||
T Consensus 117 ~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCE
Confidence 4555566778888752 7777643 346689999999999999764322222 1223355667777766 7999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
|+ |+|.+.+|+.+++.+|||+|++|+.
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~g 218 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGPG 218 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 98 9999999999999999999998863
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=71.74 Aligned_cols=90 Identities=28% Similarity=0.320 Sum_probs=62.3
Q ss_pred CHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
.++++.++++... .+.+|.+ ++.+. ++.+.++|+|.|.++. |.. ....+++.+..+.+.++.++||
T Consensus 103 ~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsT-G~~---~~~at~~~v~~~~~~~~~~v~i 177 (203)
T cd00959 103 VYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTST-GFG---PGGATVEDVKLMKEAVGGRVGV 177 (203)
T ss_pred HHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCC-CCC---CCCCCHHHHHHHHHHhCCCceE
Confidence 4567888887764 2333323 44444 6778899999999973 211 1234455444444555457999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEE
Q 020636 284 FLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~ 307 (323)
.++|||+|.+++++++++||+.++
T Consensus 178 k~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 178 KAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred EEeCCCCCHHHHHHHHHhChhhcc
Confidence 999999999999999999998764
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.8e-05 Score=75.86 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCCEEEe--ccCC-HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVK--GVLT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK--~i~~-~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.++.+++ .+.++++. ...+ .+.++.+.+.|+|+|.++. |.......+..++.++++++.+ ++||++.||| +.
T Consensus 99 ~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~ 173 (430)
T PRK07028 99 AVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHV-GIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DA 173 (430)
T ss_pred HHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-ccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CH
Confidence 4555555 46666664 2223 5667888999999997752 2211111234567788887766 6999999999 68
Q ss_pred HHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 293 TDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+.+.++++.||+++.+||.++..+++++.
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~~~d~~~~ 202 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIKSADVTEA 202 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcCCCCHHHH
Confidence 99999999999999999999988776654
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.1e-06 Score=70.97 Aligned_cols=84 Identities=23% Similarity=0.184 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCC-CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQ-LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~-~~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.+.++++.+.+.|+|+|.++...... ..+ .+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|
T Consensus 102 ~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 102 THSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEe
Confidence 467899999999999999986432111 111 345677888887765 79999999995 699999999999999999
Q ss_pred cccccCcchh
Q 020636 310 IMPCQCPLTE 319 (323)
Q Consensus 310 ~~~~~~~~~~ 319 (323)
+.++..++..
T Consensus 179 ~~i~~~~~~~ 188 (196)
T cd00564 179 SAITGADDPA 188 (196)
T ss_pred hHhhcCCCHH
Confidence 9998876644
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-05 Score=73.59 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=67.6
Q ss_pred HHHHHHhcCCCEEEe---------ccCCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 217 VKWLQTITKLPILVK---------GVLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 217 i~~i~~~~~~pv~vK---------~i~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
+.++...++.|+++- ...+.+. ++.+.+.|||+|..+-. ...+.+.++.+.. ++||
T Consensus 131 v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~---------~~~~~l~~~~~~~--~ipV 199 (267)
T PRK07226 131 VAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYT---------GDPESFREVVEGC--PVPV 199 (267)
T ss_pred HHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCC---------CCHHHHHHHHHhC--CCCE
Confidence 334444567887663 1123333 67788999999988632 1356777777655 7999
Q ss_pred EEecCCC--CHHHHHHHH----HcCCCEEEEccccccCcchhh
Q 020636 284 FLDGGVR--RGTDVFKAL----ALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 284 ia~GGI~--~~~di~kal----~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+++|||+ |.+++++.+ ++||+++.+|+.++..++-.+
T Consensus 200 ~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~ 242 (267)
T PRK07226 200 VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEA 242 (267)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHH
Confidence 9999999 778777775 899999999999988877544
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-05 Score=71.88 Aligned_cols=107 Identities=32% Similarity=0.407 Sum_probs=79.4
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcC---------C------------CCCCC----------
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN---------H------------GARQL---------- 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~---------~------------gg~~~---------- 260 (323)
+.+.|++|-+.+.+||..|. +...-+|+.+...|+|.|.=|- | |.|.+
T Consensus 65 Dp~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EG 144 (296)
T COG0214 65 DPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEG 144 (296)
T ss_pred CHHHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhh
Confidence 45678889999999999996 4788899999999999996431 1 11110
Q ss_pred -------------C-------------------------------CCcchHHHHHHHHHHhcCCCeE--EEecCCCCHHH
Q 020636 261 -------------D-------------------------------YVPATIMALEEVVKATQGRIPV--FLDGGVRRGTD 294 (323)
Q Consensus 261 -------------~-------------------------------~~~~~~~~l~~i~~~~~~~~pv--ia~GGI~~~~d 294 (323)
+ .-..+++++.++.+. +++|| ++.|||.|+.|
T Consensus 145 AaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPAD 222 (296)
T COG0214 145 AAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPAD 222 (296)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhH
Confidence 0 001234555555443 36666 78999999999
Q ss_pred HHHHHHcCCCEEEEccccccCcchhhh
Q 020636 295 VFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+.-++.+|||+|.+|+.+++.++-++.
T Consensus 223 AALMM~LGadGVFVGSGIFKS~~P~~~ 249 (296)
T COG0214 223 AALMMQLGADGVFVGSGIFKSSNPEKR 249 (296)
T ss_pred HHHHHHhCCCeEEecccccCCCCHHHH
Confidence 999999999999999999998776654
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-05 Score=71.27 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 267 ~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.+.++++.. ++||++.+||++++|+.+++.. ||+|.+|++|+..
T Consensus 189 ~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~ 234 (258)
T PRK13111 189 AELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKI 234 (258)
T ss_pred HHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHH
Confidence 35777777766 7999999999999999999975 9999999998643
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.3e-06 Score=77.71 Aligned_cols=207 Identities=18% Similarity=0.208 Sum_probs=138.0
Q ss_pred cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC--CCHHHHHh---------------------cCC--
Q 020636 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVAS---------------------TGP-- 122 (323)
Q Consensus 68 ~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~--~~~eei~~---------------------~~~-- 122 (323)
..++.-+++|||- + -|++++.-.|-++|.-++.+.--. +-++-+.. ..|
T Consensus 7 l~y~nk~iLApMv--r----~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMV--R----AGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHH--H----hccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 3456778999983 2 378899999999999998886311 11111110 011
Q ss_pred -CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 123 -~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
....||+- ..+.+...+..+.+ ...+.+++++++||-. |+.-. +-++++
T Consensus 81 ~~rlilQ~g-T~sa~lA~e~A~lv-~nDvsgidiN~gCpK~----------fSi~~-----------------gmgaal- 130 (477)
T KOG2334|consen 81 NSRLILQIG-TASAELALEAAKLV-DNDVSGIDINMGCPKE----------FSIHG-----------------GMGAAL- 130 (477)
T ss_pred cCeEEEEec-CCcHHHHHHHHHHh-hcccccccccCCCCCc----------ccccc-----------------CCCchh-
Confidence 34678874 35555444433333 3356789999999852 32110 111111
Q ss_pred HHHhhccCCccCHHHHHHHHHhcCCCEEEecc------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (323)
-.+|+.-...+..+.+...+|+..|.. .+.+-.+++.+.|+.+|.|+.+....-..-+.+-+.+.++.+
T Consensus 131 -----Lt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~ 205 (477)
T KOG2334|consen 131 -----LTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQ 205 (477)
T ss_pred -----hcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHH
Confidence 125566667788888888999999964 345668888999999999954322111234667888999999
Q ss_pred HhcCCCeEEEecCCCC---HHHHHHHHH-cCCCEEEEccccccCc
Q 020636 276 ATQGRIPVFLDGGVRR---GTDVFKALA-LGASGIFVSIMPCQCP 316 (323)
Q Consensus 276 ~~~~~~pvia~GGI~~---~~di~kal~-lGAd~V~iG~~~~~~~ 316 (323)
.++ .+|||+.||..+ ..|+.+... .|++.||+.|....+|
T Consensus 206 ~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~ 249 (477)
T KOG2334|consen 206 ACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNP 249 (477)
T ss_pred Hhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCC
Confidence 884 399999999999 889998876 6999999999766554
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.28 E-value=5e-06 Score=74.24 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=59.0
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCC-CCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
...++-.++++.++||..|..-+.. |+ ..+..+...|..+.+.. ++|||+|+||.++.|+.+|+++|||+|.+-+
T Consensus 130 ~~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 130 CTDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp E-S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred CCCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 3467888999999999999764321 11 12345667888888888 8999999999999999999999999999999
Q ss_pred ccccCcc
Q 020636 311 MPCQCPL 317 (323)
Q Consensus 311 ~~~~~~~ 317 (323)
+.....+
T Consensus 206 AiA~A~d 212 (247)
T PF05690_consen 206 AIAKAKD 212 (247)
T ss_dssp HHHTSSS
T ss_pred HHhccCC
Confidence 8866544
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=74.41 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCC
Q 020636 214 WKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 289 (323)
Q Consensus 214 ~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI 289 (323)
.+.++.+|+..+ ...+.-.+.+.|+++.+.++|+|.|.+.| .+.+.+.++.+..+ .++.+.++|||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn----------~~~e~l~~~v~~~~~~~~~~~ieAsGgI 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDN----------MSVEEIKEVVAYRNANYPHVLLEASGNI 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 456888888775 24455578999999999999999998765 35566666666543 26779999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcccccc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.+.+.++..+|+|.+.+|++...
T Consensus 239 -t~~ni~~ya~~GvD~IsvG~l~~s 262 (273)
T PRK05848 239 -TLENINAYAKSGVDAISSGSLIHQ 262 (273)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhcC
Confidence 999999999999999999997763
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.6e-06 Score=74.72 Aligned_cols=81 Identities=30% Similarity=0.385 Sum_probs=66.4
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+.|+.+.+.|+|.+.+....+ ...+.+..++.+.++.+.+ ++||++.|||++.+|+.+++..|||.|++|+.++.
T Consensus 31 p~~~a~~~~~~g~d~l~v~dl~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 31 PVEVAKKWEEAGAKWLHVVDLDG-AKGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHHcCCCEEEEECCCc-cccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 34668888899999999864322 1122456788999998887 79999999999999999999999999999999988
Q ss_pred Ccch
Q 020636 315 CPLT 318 (323)
Q Consensus 315 ~~~~ 318 (323)
+|++
T Consensus 108 dp~~ 111 (234)
T cd04732 108 NPEL 111 (234)
T ss_pred ChHH
Confidence 7753
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=71.64 Aligned_cols=88 Identities=25% Similarity=0.330 Sum_probs=65.4
Q ss_pred HhcCCCEEEecc---------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 222 TITKLPILVKGV---------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 222 ~~~~~pv~vK~i---------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.++.|+++=.. .+.++ ++.+.++|+|+|.+++. ..++.+.++.+.+ ++||++.||
T Consensus 119 ~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~---------~~~~~~~~i~~~~--~~pvv~~GG 187 (235)
T cd00958 119 HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT---------GDAESFKEVVEGC--PVPVVIAGG 187 (235)
T ss_pred HHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC---------CCHHHHHHHHhcC--CCCEEEeCC
Confidence 446788876321 22333 45588999999998532 1467788887776 799999999
Q ss_pred C--CCHHH----HHHHHHcCCCEEEEccccccCcchhh
Q 020636 289 V--RRGTD----VFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 289 I--~~~~d----i~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+ .+.+| +.+++.+||++|.+||.++..++-.+
T Consensus 188 ~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~ 225 (235)
T cd00958 188 PKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVA 225 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHH
Confidence 7 67766 67778999999999999998887544
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.3e-05 Score=68.19 Aligned_cols=103 Identities=24% Similarity=0.287 Sum_probs=69.0
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC--CC--CCCCC-cchH-HHHHHHHHHhcCCCeEEEecCCC
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--AR--QLDYV-PATI-MALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g--g~--~~~~~-~~~~-~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
++..++ .++.+++ .+.+.++++.+.+.|.|.|.+-..+ |+ ..... +..+ +.+..+++.. .++||++.|||+
T Consensus 107 v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~-~~~pvi~GggI~ 183 (223)
T PRK04302 107 VERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN-PDVKVLCGAGIS 183 (223)
T ss_pred HHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhcc-CCCEEEEECCCC
Confidence 444444 3554443 4567788888889999988764321 21 11111 1122 2233333322 368999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhhhc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEKIN 322 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~~~ 322 (323)
+++++..+++.|||+|.+|++++..+++.++.
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~ 215 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVKAKDPEAAL 215 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhCCcCHHHHH
Confidence 99999999999999999999999998887653
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.3e-06 Score=79.48 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=70.5
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEE
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia 285 (323)
+|++..+.++.+++. ++++.++.. ...+-++.+.++|+|.|+++++...+.+.... .+..+.++.+.. ++|||+
T Consensus 116 ~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa 192 (368)
T PRK08649 116 KPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV 192 (368)
T ss_pred CHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE
Confidence 344556678888875 455544432 34577899999999999996543222222222 344456666655 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
|+|.|.+++.+++.+|||+|++|+.
T Consensus 193 -G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 193 -GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred -eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 9999999999999999999999964
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=73.94 Aligned_cols=97 Identities=23% Similarity=0.226 Sum_probs=76.0
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC-------------------CC--------------C--
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-------------------HG--------------A-- 257 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~-------------------~g--------------g-- 257 (323)
+.+.++.|++ +++||.+.|-...++++.++++||+.|++.. +| |
T Consensus 72 n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~ 150 (262)
T PLN02446 72 LAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRY 150 (262)
T ss_pred cHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCE
Confidence 3667888888 8899999964335999999999999998842 11 1
Q ss_pred C----------CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 020636 258 R----------QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (323)
Q Consensus 258 ~----------~~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l 301 (323)
+ .. |+ ..+.++++.++.+.+ ++|||++|||++.+|+.+...+
T Consensus 151 ~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~ 228 (262)
T PLN02446 151 YVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVA 228 (262)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHc
Confidence 0 00 22 245678888888876 8999999999999999999888
Q ss_pred --CCCEEEEcccc
Q 020636 302 --GASGIFVSIMP 312 (323)
Q Consensus 302 --GAd~V~iG~~~ 312 (323)
|..+|.+|++|
T Consensus 229 g~g~~gvIvGkAl 241 (262)
T PLN02446 229 GGGRVDVTVGSAL 241 (262)
T ss_pred CCCCEEEEEEeeH
Confidence 57899999998
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-05 Score=72.14 Aligned_cols=98 Identities=17% Similarity=0.086 Sum_probs=72.8
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCC---------------CCCC----C------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH---------------GARQ----L------------ 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~---------------gg~~----~------------ 260 (323)
+.+.++++.+....|+.+. |+.+.++++.+.+.|++.|++... |+.+ +
T Consensus 61 n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~g 140 (232)
T PRK13586 61 NEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRG 140 (232)
T ss_pred hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccC
Confidence 4577888887443599888 579999999999999999987321 1100 0
Q ss_pred ------------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 261 ------------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 261 ------------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
|+ ..++++++..+.+. ..|++++|||++.+|+.++..+|+++|.+
T Consensus 141 w~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 141 WKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 11 13455566555443 34699999999999999999999999999
Q ss_pred ccccc
Q 020636 309 SIMPC 313 (323)
Q Consensus 309 G~~~~ 313 (323)
|+++.
T Consensus 218 g~Aly 222 (232)
T PRK13586 218 GMAFY 222 (232)
T ss_pred ehhhh
Confidence 99985
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-05 Score=68.54 Aligned_cols=171 Identities=19% Similarity=0.238 Sum_probs=102.9
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh----h
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA----G 206 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 206 (323)
...+.+...++++.+-+.|++.+-||.++|..-.--+.++..+ |. +.+ + .+.+.+. ........ .
T Consensus 15 r~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~-~~v----G--AGTV~~~--e~a~~a~~aGA~F 83 (196)
T PF01081_consen 15 RGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PD-LLV----G--AGTVLTA--EQAEAAIAAGAQF 83 (196)
T ss_dssp TTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TT-SEE----E--EES--SH--HHHHHHHHHT-SE
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CC-Cee----E--EEeccCH--HHHHHHHHcCCCE
Confidence 3566777778888888899999999999875332223344444 21 110 1 0110000 00000110 1
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
...|.++.+.+++.++. ++|+ +=|++|+.|+..+.++|++.|.+.-.+- ..-...++.++.-++ +++++..
T Consensus 84 ivSP~~~~~v~~~~~~~-~i~~-iPG~~TptEi~~A~~~G~~~vK~FPA~~------~GG~~~ik~l~~p~p-~~~~~pt 154 (196)
T PF01081_consen 84 IVSPGFDPEVIEYAREY-GIPY-IPGVMTPTEIMQALEAGADIVKLFPAGA------LGGPSYIKALRGPFP-DLPFMPT 154 (196)
T ss_dssp EEESS--HHHHHHHHHH-TSEE-EEEESSHHHHHHHHHTT-SEEEETTTTT------TTHHHHHHHHHTTTT-T-EEEEB
T ss_pred EECCCCCHHHHHHHHHc-CCcc-cCCcCCHHHHHHHHHCCCCEEEEecchh------cCcHHHHHHHhccCC-CCeEEEc
Confidence 12366777788877764 6654 5578999999999999999999953210 111345555554444 7999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccccCc-----chhhhc
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPCQCP-----LTEKIN 322 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~~~~-----~~~~~~ 322 (323)
|||.. +++...+.+|+.+|++|+.+.... +|.+|.
T Consensus 155 GGV~~-~N~~~~l~ag~~~vg~Gs~L~~~~~i~~~~~~~I~ 194 (196)
T PF01081_consen 155 GGVNP-DNLAEYLKAGAVAVGGGSWLFPKDLIAAGDWDEIT 194 (196)
T ss_dssp SS--T-TTHHHHHTSTTBSEEEESGGGSHHHHHTT-HHHHH
T ss_pred CCCCH-HHHHHHHhCCCEEEEECchhcCHHHHhcCCHHHHh
Confidence 99986 789999999999999999887655 555553
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.2e-05 Score=75.03 Aligned_cols=185 Identities=14% Similarity=0.089 Sum_probs=109.0
Q ss_pred HHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHh---hccCCCCccccccc-ccccc
Q 020636 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNF-QGLDL 189 (323)
Q Consensus 114 ~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~---~~~~~~~~~~~~~~-~~~~~ 189 (323)
+.|+.++.|....+ ....|+. ++.+.. +.|+.+|-|-.|...++-...+++ ....+| .+ .++-.
T Consensus 53 IaEiKraSPs~G~i--~~~~d~~---~~a~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~P------vLrKDFii 120 (454)
T PRK09427 53 ILECKKASPSKGLI--RDDFDPA---EIARVY-KHYASAISVLTDEKYFQGSFDFLPIVRAIVTQP------ILCKDFII 120 (454)
T ss_pred EEEeecCCCCCCcc--CCCCCHH---HHHHHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHhCCCC------EEeccccC
Confidence 34556666632221 2233553 444445 678999988888887765555543 222222 11 12222
Q ss_pred CCCc--c--ccchhhHHHHhhccCCccCHHHHHHHH---HhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCC
Q 020636 190 GKMD--E--ANDSGLAAYVAGQIDRSLSWKDVKWLQ---TITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY 262 (323)
Q Consensus 190 ~~~~--~--~~~~~~~~~~~~~~~~~~~~~~i~~i~---~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~ 262 (323)
.+.+ . ..|+...-.+... +.-+.++.+. ...++-.+| .+.+.++++++.++|++.|-+.|+.- .+
T Consensus 121 d~~QI~ea~~~GADavLLI~~~----L~~~~l~~l~~~a~~lGl~~lv-Evh~~~El~~al~~~a~iiGiNnRdL---~t 192 (454)
T PRK09427 121 DPYQIYLARYYGADAILLMLSV----LDDEQYRQLAAVAHSLNMGVLT-EVSNEEELERAIALGAKVIGINNRNL---RD 192 (454)
T ss_pred CHHHHHHHHHcCCCchhHHHHh----CCHHHHHHHHHHHHHcCCcEEE-EECCHHHHHHHHhCCCCEEEEeCCCC---cc
Confidence 2211 0 0111111111111 2223333333 334554333 57899999999999999998877543 23
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchh
Q 020636 263 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 263 ~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
-..++..-.++...++.++.+|+.+||+|++|+.++. .|||+|.||+.|+.+++-.
T Consensus 193 ~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~~d~~ 248 (454)
T PRK09427 193 LSIDLNRTRELAPLIPADVIVISESGIYTHAQVRELS-PFANGFLIGSSLMAEDDLE 248 (454)
T ss_pred ceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCCCCHH
Confidence 3334444555566666678899999999999999864 5899999999999988744
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=9e-06 Score=73.37 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|+|.+.+..-.+. ..+....++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++..
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~ 109 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKN 109 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhC
Confidence 45578888999999998653221 223457788999998887 799999999999999999999999999999999887
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 110 ~~ 111 (233)
T PRK00748 110 PE 111 (233)
T ss_pred HH
Confidence 73
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00013 Score=65.52 Aligned_cols=144 Identities=22% Similarity=0.216 Sum_probs=94.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|...+.+.+++++++|++.+ ++|.-- .+| +| +-.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~l--H~DvmD---------G~F-vp--------------------------------n~t 43 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVV--HFDVMD---------NHY-VP--------------------------------NLT 43 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc---------Ccc-cC--------------------------------ccc
Confidence 4577777888999999998865 444210 112 11 122
Q ss_pred cCHHHHHHHHHh-cCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcCC---------------CC---------CC-----
Q 020636 212 LSWKDVKWLQTI-TKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ----- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~-~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~~---------------gg---------~~----- 259 (323)
+..+.++++|+. ++.|+=+.. +.+++. .....++|+|.|.++-- |- +.
T Consensus 44 fg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 44 FGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred cCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 446678888876 577776663 345544 56777888888877321 10 00
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhcC---CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 260 -----LD-----------YV----PATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~~---~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.| ++ +..++-+.++++.... ++||.++|||. .+.+.+..++|||.+.+||.++..+
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~ 202 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQP 202 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCC
Confidence 01 11 3345666666665521 48999999999 8899999999999999999998776
Q ss_pred chhh
Q 020636 317 LTEK 320 (323)
Q Consensus 317 ~~~~ 320 (323)
+.++
T Consensus 203 d~~~ 206 (220)
T PRK08883 203 DYKA 206 (220)
T ss_pred CHHH
Confidence 6543
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=72.45 Aligned_cols=78 Identities=24% Similarity=0.204 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|+|.+.+-.--+. .+.....+.++++.+.+ .+||.+.|||+|.+|+.+++.+||+.|.+|+.++.+
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 46678888999999876432121 13456789999999888 799999999999999999999999999999999988
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 111 p~ 112 (241)
T PRK14024 111 PE 112 (241)
T ss_pred HH
Confidence 75
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.3e-05 Score=66.48 Aligned_cols=89 Identities=25% Similarity=0.215 Sum_probs=67.1
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC--CC-CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCC
Q 020636 228 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 228 v~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~--~~-~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd 304 (323)
++--.+.+.+++..+.+.|+|+|.++.-..+.. .. .+..++.+.++.+..+ ++||++.||| +.+++.+++.+||+
T Consensus 98 ~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 98 IIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred EEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCC
Confidence 333456889999999999999999865332211 11 2235777888776553 5999999999 58999999999999
Q ss_pred EEEEccccccCcch
Q 020636 305 GIFVSIMPCQCPLT 318 (323)
Q Consensus 305 ~V~iG~~~~~~~~~ 318 (323)
+|.+|+.+..+++-
T Consensus 176 gva~~~~i~~~~dp 189 (196)
T TIGR00693 176 GVAVVSAIMQAADP 189 (196)
T ss_pred EEEEhHHhhCCCCH
Confidence 99999999876553
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.6e-05 Score=70.42 Aligned_cols=166 Identities=22% Similarity=0.191 Sum_probs=94.2
Q ss_pred eecCChHHHHHHHHHHHH--cCCcEEEEecCCCCCCchHHHHhhccCC-CC-ccccccccccccCCCcccc---------
Q 020636 130 YVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTL-PP-FLTLKNFQGLDLGKMDEAN--------- 196 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~--~G~~al~itvd~p~~g~r~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--------- 196 (323)
-+...++.+.++++++.+ .++.+++|+ |.. ....+..+.- .. .+.+..+.+||.|......
T Consensus 20 ~p~~T~~~I~~lc~eA~~~~~~faaVcV~---P~~---v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai 93 (257)
T PRK05283 20 NDDDTDEKVIALCHQAKTPVGNTAAICIY---PRF---IPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAI 93 (257)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeeEEEEC---HHH---HHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 334567777888888887 588888765 322 1111111100 01 3445556677766432100
Q ss_pred chhhHH--HHh-----hccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH-----HHHHHHcCCCEEEEcCCCCCC
Q 020636 197 DSGLAA--YVA-----GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED-----ARIAVQAGAAGIIVSNHGARQ 259 (323)
Q Consensus 197 ~~~~~~--~~~-----~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~-----a~~~~~~Gad~i~vs~~gg~~ 259 (323)
..|..+ .+. ..++.+...++|+++++..+.++.+|.| ++.++ .+.+.++|||+|..|..-+
T Consensus 94 ~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~-- 171 (257)
T PRK05283 94 AYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV-- 171 (257)
T ss_pred HcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC--
Confidence 000000 000 1122223345678888766434778865 34342 3567899999999875322
Q ss_pred CCCCcchHHHHHHHHHHh-----cCCCeEEEecCCCCHHHHHHHHHcCCCE
Q 020636 260 LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASG 305 (323)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~-----~~~~pvia~GGI~~~~di~kal~lGAd~ 305 (323)
....+.+.+.-+++.+ ++++.|-++|||||.+++.+++.+|.+.
T Consensus 172 --~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~ 220 (257)
T PRK05283 172 --PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEI 220 (257)
T ss_pred --CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHH
Confidence 1234444444444443 3478999999999999999999998664
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00031 Score=61.98 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEEcC-CCC-CCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 236 AEDARIAVQAGAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.+.++.. ..++|++.+.. +.| +........++.+.++++..+ .++|+++.|||+. +++.+++..|||+|.+||
T Consensus 118 ~~~~~~~-~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgs 195 (211)
T cd00429 118 VEVLEPY-LDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGS 195 (211)
T ss_pred HHHHHHH-HhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECH
Confidence 3444444 34489886643 222 211122233455666655542 1489999999996 999999999999999999
Q ss_pred ccccCcchhh
Q 020636 311 MPCQCPLTEK 320 (323)
Q Consensus 311 ~~~~~~~~~~ 320 (323)
+++..++..+
T Consensus 196 ai~~~~~~~~ 205 (211)
T cd00429 196 ALFGSDDYAE 205 (211)
T ss_pred HHhCCCCHHH
Confidence 9998887654
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00022 Score=65.32 Aligned_cols=153 Identities=20% Similarity=0.234 Sum_probs=97.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+.+.+.+.++.+.+.|+++|-+.+ |..- ++.++.+++ .+-.+.+.......
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELGv--PfSD----------PvADGP~Iq---------------~A~~rAL~~g~t~~ 79 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELGV--PFSD----------PVADGPTIQ---------------AAHLRALAAGVTLE 79 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEecC--CCCC----------cCccCHHHH---------------HHHHHHHHCCCCHH
Confidence 34678888999999999999887654 4320 011111111 01112222233344
Q ss_pred cCHHHHHHHHHh-cCCCEEEeccCC------HH-HHHHHHHcCCCEEEEcC---------------CCC--------CC-
Q 020636 212 LSWKDVKWLQTI-TKLPILVKGVLT------AE-DARIAVQAGAAGIIVSN---------------HGA--------RQ- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~-~~~pv~vK~i~~------~e-~a~~~~~~Gad~i~vs~---------------~gg--------~~- 259 (323)
..++.++.+|+. .++|+++=.-.+ .+ -.+.+.++|+|++++-- ||= +.
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~ 159 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTP 159 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 568889999966 578887664322 22 37789999999998721 110 00
Q ss_pred -------------------C---CCCc-----chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 260 -------------------L---DYVP-----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 260 -------------------~---~~~~-----~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
. .|.. ..-+.+..+++.. ++||.+-=||++++++.++... ||+|.+|+++
T Consensus 160 ~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 160 DERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred HHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHH
Confidence 0 0111 1234566666665 8999997799999999999999 9999999988
Q ss_pred cc
Q 020636 313 CQ 314 (323)
Q Consensus 313 ~~ 314 (323)
..
T Consensus 237 V~ 238 (265)
T COG0159 237 VK 238 (265)
T ss_pred HH
Confidence 53
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.6e-05 Score=69.39 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=67.3
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..|-|++..+.|||-++.-.-.. ..++..+.++.+.++++.+ .+|+-+-|||++.+|+.+.|.+|||-|.|.++.+.
T Consensus 32 pVelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 32 PVELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred hHHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 35778999999999998633221 1233456789999999888 89999999999999999999999999999999998
Q ss_pred Ccch
Q 020636 315 CPLT 318 (323)
Q Consensus 315 ~~~~ 318 (323)
+|..
T Consensus 109 ~p~l 112 (256)
T COG0107 109 DPEL 112 (256)
T ss_pred ChHH
Confidence 8864
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00055 Score=60.59 Aligned_cols=166 Identities=12% Similarity=0.073 Sum_probs=107.4
Q ss_pred eeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh---
Q 020636 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA--- 205 (323)
Q Consensus 129 Ly~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 205 (323)
+.-..+.+...+.++.+.+.|++.+-||.++|..-.--+.++..| | .+.+ +. +.+.+ .....+...
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~-~~~v----GA--GTVl~--~e~a~~ai~aGA 77 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--E-EAIV----GA--GTILN--AKQFEDAAKAGS 77 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--C-CCEE----ee--EeCcC--HHHHHHHHHcCC
Confidence 344567888888888888999999999999886433334444444 2 1110 10 00000 000011110
Q ss_pred -hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 206 -GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 206 -~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
....|.++.+.+++.++ .++|. +=|++|+-|+..+.++|+|.|.+.-.+ .-++ ...++.++.-++ ++|++
T Consensus 78 ~FivSP~~~~~vi~~a~~-~~i~~-iPG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG---~~yikal~~plp-~~~l~ 148 (201)
T PRK06015 78 RFIVSPGTTQELLAAAND-SDVPL-LPGAATPSEVMALREEGYTVLKFFPAE---QAGG---AAFLKALSSPLA-GTFFC 148 (201)
T ss_pred CEEECCCCCHHHHHHHHH-cCCCE-eCCCCCHHHHHHHHHCCCCEEEECCch---hhCC---HHHHHHHHhhCC-CCcEE
Confidence 11246677788887765 46654 558999999999999999999985311 0011 244555555454 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
..|||.. +++.+.|.+|+..++.|+.+...
T Consensus 149 ptGGV~~-~n~~~~l~ag~~~~~ggs~l~~~ 178 (201)
T PRK06015 149 PTGGISL-KNARDYLSLPNVVCVGGSWVAPK 178 (201)
T ss_pred ecCCCCH-HHHHHHHhCCCeEEEEchhhCCc
Confidence 9999976 78999999998888888887643
|
|
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.3e-05 Score=66.41 Aligned_cols=42 Identities=36% Similarity=0.544 Sum_probs=36.2
Q ss_pred CCCeE--EEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 279 GRIPV--FLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 279 ~~~pv--ia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+++|| +++|||.|+.|+.-+++||||+|.+|+..+..++-.|
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k 249 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVK 249 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHH
Confidence 47777 6899999999999999999999999998887765433
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00058 Score=60.45 Aligned_cols=101 Identities=22% Similarity=0.194 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHH--HHHHHcCCCEEEEcCCCCCCC--CCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDA--RIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a--~~~~~~Gad~i~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
.+.++.+++..+.+++.. ++.+..+. ..+...|+|++.+....+... .+.+..++.++++. . ++|+++.||
T Consensus 85 ~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~--~~PvilaGG 160 (203)
T cd00405 85 PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--S--RKPVILAGG 160 (203)
T ss_pred HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--c--CCCEEEECC
Confidence 346677777666665522 23333332 345568999998855322111 23345677777665 3 799999999
Q ss_pred CCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 289 VRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 289 I~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
| +++.+.++++.| +++|-+.+.+...|-.+
T Consensus 161 I-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~k 191 (203)
T cd00405 161 L-TPDNVAEAIRLVRPYGVDVSSGVETSPGIK 191 (203)
T ss_pred C-ChHHHHHHHHhcCCCEEEcCCcccCCCCCc
Confidence 9 999999999999 99999999998765443
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.5e-05 Score=69.17 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=64.6
Q ss_pred HHHHHHHHHhc---CCCEEEeccCCHHH-------------HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh
Q 020636 214 WKDVKWLQTIT---KLPILVKGVLTAED-------------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 277 (323)
Q Consensus 214 ~~~i~~i~~~~---~~pv~vK~i~~~e~-------------a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~ 277 (323)
.+.++.+++.. ++|+++-...+.++ ++.+.++|+|.|.++.. +. ........+.+.++.+..
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~-~~~t~~~~~~~~~~~~~~ 188 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG-KP-VGATPEDVELMRKAVEAA 188 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SS-SCSHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cc-ccccHHHHHHHHHHHHhc
Confidence 34566665554 67777774433333 56778999999999753 21 222233455566666544
Q ss_pred cCCCe----EEEecCC------CCHHHHHHHHHcCC--CEEEEccccc
Q 020636 278 QGRIP----VFLDGGV------RRGTDVFKALALGA--SGIFVSIMPC 313 (323)
Q Consensus 278 ~~~~p----via~GGI------~~~~di~kal~lGA--d~V~iG~~~~ 313 (323)
.+| |.++||+ ++.+++.+++.+|| .++..||.+.
T Consensus 189 --~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 189 --PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp --SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred --CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 466 9999999 99999999999999 8888887553
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=67.69 Aligned_cols=153 Identities=20% Similarity=0.281 Sum_probs=91.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+.+.+.++.+.+.|++.+-|.+ |..- | ...||.- ..+..+.+....+..
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGi--PfSD------------P----------~ADGpvI---q~A~~rAL~~G~~~~ 72 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGI--PFSD------------P----------VADGPVI---QKASQRALKNGFTLE 72 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE----SSS------------C----------TTSSHHH---HHHHHHHHHTT--HH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCCC------------C----------CCCCHHH---HHHHHHHHHCCCCHH
Confidence 45678889999999999999887654 4310 1 0011110 001111222222333
Q ss_pred cCHHHHHHHH-HhcCCCEEEeccC------C-HHHHHHHHHcCCCEEEEcC---------------CCCC--------C-
Q 020636 212 LSWKDVKWLQ-TITKLPILVKGVL------T-AEDARIAVQAGAAGIIVSN---------------HGAR--------Q- 259 (323)
Q Consensus 212 ~~~~~i~~i~-~~~~~pv~vK~i~------~-~e~a~~~~~~Gad~i~vs~---------------~gg~--------~- 259 (323)
..++.++++| +..+.|+++=+=. . .+-++.+.++|+|++++-. ||=. .
T Consensus 73 ~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 73 KIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp HHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred HHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 4467788898 6668888765321 1 2347888899999998822 1100 0
Q ss_pred -------------------C---CCC----cc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 260 -------------------L---DYV----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 260 -------------------~---~~~----~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
. .|. +. ..+.+..+++.. +.||.+-=||++++++.++. .|||+|.||++|
T Consensus 153 ~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~ 229 (259)
T PF00290_consen 153 EERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAF 229 (259)
T ss_dssp HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHH
T ss_pred HHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHH
Confidence 0 111 11 135666776666 89999977999999999888 999999999988
Q ss_pred cc
Q 020636 313 CQ 314 (323)
Q Consensus 313 ~~ 314 (323)
+.
T Consensus 230 v~ 231 (259)
T PF00290_consen 230 VK 231 (259)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.7e-05 Score=68.96 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=72.5
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC-------------------CCCCC-------C------
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-------------------HGARQ-------L------ 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~-------------------~gg~~-------~------ 260 (323)
+.+.++.+.+.+++|+.+.|-...++++.++++||+.|+++. +|+.+ .
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~ 143 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR 143 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence 567889999989999999864334999999999999999853 11100 0
Q ss_pred --------------------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 020636 261 --------------------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 261 --------------------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~ 300 (323)
|+ ..+.++++.++.+.+ ++|||++||+++.+|+.++-.
T Consensus 144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 144 WIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred EEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHH
Confidence 11 123455555555555 799999999999999998855
Q ss_pred c--CCCEEEEccccc
Q 020636 301 L--GASGIFVSIMPC 313 (323)
Q Consensus 301 l--GAd~V~iG~~~~ 313 (323)
+ |...+.+|++++
T Consensus 222 ~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 222 LSKGKVDLTIGSALD 236 (253)
T ss_pred hcCCCCcEEeeehHH
Confidence 5 666688898764
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.1e-05 Score=69.98 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+-|+...+. ++.+.+-.--| .+.+.++.++.+.++.+.+ .+||+++|||+|.+|+.+++.+||+.|.+|+..+ +|
T Consensus 34 ~~a~~~~~~-~~~l~ivDldg-a~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~-~~ 108 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDG-AFEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF-DL 108 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcc-hhcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-CH
Confidence 445666666 88877633222 1223456889999998876 7999999999999999999999999999999988 65
Q ss_pred ch
Q 020636 317 LT 318 (323)
Q Consensus 317 ~~ 318 (323)
.+
T Consensus 109 ~~ 110 (228)
T PRK04128 109 EF 110 (228)
T ss_pred HH
Confidence 53
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00072 Score=62.76 Aligned_cols=92 Identities=23% Similarity=0.217 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 290 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~ 290 (323)
.+.++.+|+..+...+.-.+.+.+++..+.++|+|+|.+.+-. +.. +.++.+.++ .++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p~~---l~~~~~~~~~~~~~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------PEE---LAELVPKLRSLAPPVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------HHH---HHHHHHHHhccCCCceEEEECCC-
Confidence 3457777776543233334689999999999999999886521 122 233333221 26999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+.+..+.|+|++.+|..+...|
T Consensus 240 ~~~ni~~~~~~Gvd~I~vsai~~a~~ 265 (272)
T cd01573 240 NIENAAAYAAAGADILVTSAPYYAKP 265 (272)
T ss_pred CHHHHHHHHHcCCcEEEEChhhcCcc
Confidence 88999999999999998888765443
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.4e-05 Score=70.78 Aligned_cols=98 Identities=20% Similarity=0.172 Sum_probs=73.1
Q ss_pred HHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 218 KWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 218 ~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
...|+..+ ..++-..+.+.+++..+.+.|+|+|.++-...+. ....+..++.+..+.+.. ++||++-|||. .++
T Consensus 231 ~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~n 307 (347)
T PRK02615 231 AVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSN 307 (347)
T ss_pred HHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHH
Confidence 34455442 3344345578999999999999999987544321 222345578888887766 79999999995 889
Q ss_pred HHHHHHcCCCEEEEccccccCcch
Q 020636 295 VFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+.+++.+||++|.+++.++..++-
T Consensus 308 i~~l~~~Ga~gVAvisaI~~a~dp 331 (347)
T PRK02615 308 IPEVLQAGAKRVAVVRAIMGAEDP 331 (347)
T ss_pred HHHHHHcCCcEEEEeHHHhCCCCH
Confidence 999999999999999999876543
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=65.96 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=71.8
Q ss_pred HHHHHHhcCCCEEEec--cCCHHHHHHHHHcCCCEEEEcCCCCC-CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 217 VKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~--i~~~e~a~~~~~~Gad~i~vs~~gg~-~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+...|+..+--.++.. ..+.+++..+.+.|+|+|.++.--.+ ..+..+..++.+.++.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 3455555432234443 35788898999999999998643211 1122234567777777766 7999999999 899
Q ss_pred HHHHHHHcCCCEEEEccccccCcch
Q 020636 294 DVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
++.+++..||++|.+-+.++..++.
T Consensus 177 n~~~~~~~GA~giAvisai~~~~dp 201 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFDAHDP 201 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhCCCCH
Confidence 9999999999999999999876654
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=68.15 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
.++.+|+..+...+--.+.+.++++.+.++|+|+|.+.| .+.+.+.++.+..++++|+.++||| +.+.+
T Consensus 179 av~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~----------~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni 247 (277)
T PRK05742 179 AVAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDE----------LSLDDMREAVRLTAGRAKLEASGGI-NESTL 247 (277)
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCcEEEECCC-CHHHH
Confidence 366677664322233346889999999999999998754 2455666666655558999999999 68999
Q ss_pred HHHHHcCCCEEEEccccccCc
Q 020636 296 FKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 296 ~kal~lGAd~V~iG~~~~~~~ 316 (323)
.+..+.|+|.+.+|......+
T Consensus 248 ~~~a~tGvD~Isvg~lt~s~~ 268 (277)
T PRK05742 248 RVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred HHHHHcCCCEEEEChhhcCCc
Confidence 999999999999998765544
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.8e-05 Score=69.69 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.++.+.+.|++.+.+-...+ .........+.+.++.+.+ .+|+++.|||++.+|+.+++.+||+.|.+|+..+.+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~-~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDG-AFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVEN 111 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechh-hhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 4668888899999998754321 1123345678888888877 799999999999999999999999999999988877
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|+
T Consensus 112 ~~ 113 (241)
T PRK13585 112 PE 113 (241)
T ss_pred hH
Confidence 64
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.4e-05 Score=68.37 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|++.+.+..-.+ ...+....++.+.++.+.+ ++||+++|||++.+|+.+++..||+.|.+|+.++..
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~ 109 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALEN 109 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcC
Confidence 4557778889999888754332 1123356788899998887 799999999999999999999999999999999887
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 110 ~~ 111 (232)
T TIGR03572 110 PD 111 (232)
T ss_pred HH
Confidence 74
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.2e-05 Score=75.54 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 020636 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFVSIMPCQ 314 (323)
Q Consensus 265 ~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-lGAd~V~iG~~~~~ 314 (323)
.+++++..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++.|..
T Consensus 469 ~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 469 FDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 3466777777776 899999999999999999997 67999999998854
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=67.81 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCC-CEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCC
Q 020636 214 WKDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 289 (323)
Q Consensus 214 ~~~i~~i~~~~~~-pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI 289 (323)
.+.++.+|+..+. ..+--.+.+.+++..+.++|+|+|.+.|- +.+.+.++.+.+ ..++++.++|||
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~----------~~e~l~~av~~~~~~~~~i~leAsGGI 252 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM----------PVDLMQQAVQLIRQQNPRVKIEASGNI 252 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3457888887652 22333568999999999999999988753 234444444433 347999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+.+..++|+|.+.+|++....|
T Consensus 253 -t~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 253 -TLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred -CHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 69999999999999999999876443
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=67.24 Aligned_cols=87 Identities=22% Similarity=0.223 Sum_probs=68.4
Q ss_pred HHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+|+..+ ...+--.+.+.++++.+.+.|+|+|.+.+ -..+.++++.+.++.++||.++||| +.+.
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~----------~~~e~lk~~v~~~~~~ipi~AsGGI-~~~n 235 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDN----------MKPEEIKEAVQLLKGRVLLEASGGI-TLDN 235 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhcCCCcEEEECCC-CHHH
Confidence 4778888764 33344456899999999999999998865 2336667776666445999999999 6899
Q ss_pred HHHHHHcCCCEEEEccccc
Q 020636 295 VFKALALGASGIFVSIMPC 313 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~ 313 (323)
+.+..+.|+|++.+|....
T Consensus 236 i~~~a~~Gvd~Isvgait~ 254 (265)
T TIGR00078 236 LEEYAETGVDVISSGALTH 254 (265)
T ss_pred HHHHHHcCCCEEEeCHHHc
Confidence 9999999999999977654
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.8e-05 Score=68.53 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=63.4
Q ss_pred HHHHHHHH-cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 237 EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 237 e~a~~~~~-~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+-|+...+ .|||.+.+..-.+. ..+.+..++.+.++.+.+ .+||.+.|||||.+|+.+++.+||+.|.+|+..+.+
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~ 111 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQD 111 (234)
T ss_pred HHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcC
Confidence 55777777 69999987432211 123456789999999877 799999999999999999999999999999999888
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 112 ~~ 113 (234)
T PRK13587 112 TD 113 (234)
T ss_pred HH
Confidence 74
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.6e-05 Score=69.40 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=65.4
Q ss_pred eccCCHHHHHHHHHcCCCEEEEcC--CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 231 KGVLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 231 K~i~~~e~a~~~~~~Gad~i~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
=-..++..++++.+.|+-+|.--. -|. ..+....+.+..+.+.. ++||+.++||.+++|+.+|+++|||+|.+
T Consensus 203 yc~~d~~~a~~l~~~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 203 YCSDDPIAAKRLEDAGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred EeCCCHHHHHHHHhcCCEEEeeccccccC---CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 345789999999999995554311 111 01244667777777765 79999999999999999999999999999
Q ss_pred ccccccCcchhhh
Q 020636 309 SIMPCQCPLTEKI 321 (323)
Q Consensus 309 G~~~~~~~~~~~~ 321 (323)
.++....++--++
T Consensus 278 nSaIa~a~dPv~M 290 (326)
T PRK11840 278 NTAIAEAKNPVLM 290 (326)
T ss_pred cceeccCCCHHHH
Confidence 9998876665443
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00019 Score=66.40 Aligned_cols=87 Identities=23% Similarity=0.231 Sum_probs=69.4
Q ss_pred HHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+|+..+ ...+.-.+.+.++++.+.++|+|+|.+.+- ..+.+.++.+.++.++|+.++||| +.+.
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~n 239 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLEN 239 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHHH
Confidence 4777888764 323434568999999999999999988652 356777777666446999999999 6899
Q ss_pred HHHHHHcCCCEEEEccccc
Q 020636 295 VFKALALGASGIFVSIMPC 313 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~ 313 (323)
+.+..+.|+|++.+|+...
T Consensus 240 i~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 240 IRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHcCCCEEEEEeeec
Confidence 9999999999999999776
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.001 Score=59.53 Aligned_cols=170 Identities=15% Similarity=0.127 Sum_probs=107.5
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+-+....+.+...++++.+.+.|++.+-||+..|..-.--+.++..| |. +.+ ..+.-..+ ........
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~-~~I--GAGTVl~~------~~a~~a~~ 85 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PE-ALI--GAGTVLNP------EQLAQAIE 85 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CC-CEE--EEeeccCH------HHHHHHHH
Confidence 444445677888888888888999999999998885333334555555 31 110 01100000 00000100
Q ss_pred h----ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 206 G----QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 206 ~----~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
. -..|.++.+.++..++ .++|+ +=|+.|+.++..+.++|++.|.+.-.+ .. + ....++.++.-++ .+
T Consensus 86 aGA~FivsP~~~~~vi~~a~~-~~i~~-iPG~~TptEi~~a~~~Ga~~vKlFPa~--~~-g---g~~~lk~l~~p~p-~~ 156 (212)
T PRK05718 86 AGAQFIVSPGLTPPLLKAAQE-GPIPL-IPGVSTPSELMLGMELGLRTFKFFPAE--AS-G---GVKMLKALAGPFP-DV 156 (212)
T ss_pred cCCCEEECCCCCHHHHHHHHH-cCCCE-eCCCCCHHHHHHHHHCCCCEEEEccch--hc-c---CHHHHHHHhccCC-CC
Confidence 0 1235666777777665 46654 447899999999999999999994211 00 1 2345555555454 69
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+++..|||.. +++.+.+.+|+..++.|+.++...
T Consensus 157 ~~~ptGGV~~-~ni~~~l~ag~v~~vggs~L~~~~ 190 (212)
T PRK05718 157 RFCPTGGISP-ANYRDYLALPNVLCIGGSWMVPKD 190 (212)
T ss_pred eEEEeCCCCH-HHHHHHHhCCCEEEEEChHhCCcc
Confidence 9999999976 899999999977777788776543
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0017 Score=60.56 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=61.9
Q ss_pred cCCHHHHHHHH-HcCCCEEEEc--C-CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec--CCCCHHHHHHHHHcCCCEE
Q 020636 233 VLTAEDARIAV-QAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGI 306 (323)
Q Consensus 233 i~~~e~a~~~~-~~Gad~i~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G--GI~~~~di~kal~lGAd~V 306 (323)
..++++|+.+. +.|+|++-++ + ||- ..+...-.++.|.++.+.+ ++|+++=| ||. .+++.+++..|++.|
T Consensus 152 ~t~~eea~~f~~~tg~DyLAvaiG~~hg~-~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~ki 227 (281)
T PRK06806 152 LTSTTEAKRFAEETDVDALAVAIGNAHGM-YNGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKI 227 (281)
T ss_pred eCCHHHHHHHHHhhCCCEEEEccCCCCCC-CCCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 36889999887 5699999994 3 342 2222334688999999988 79999999 874 578999999999999
Q ss_pred EEcccccc
Q 020636 307 FVSIMPCQ 314 (323)
Q Consensus 307 ~iG~~~~~ 314 (323)
-+.|.+..
T Consensus 228 nv~T~i~~ 235 (281)
T PRK06806 228 NVATATFN 235 (281)
T ss_pred EEhHHHHH
Confidence 99998865
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0014 Score=58.42 Aligned_cols=102 Identities=13% Similarity=0.165 Sum_probs=60.1
Q ss_pred HHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcC-C-CCCCCCCCcchHHHHHHHHHHhcC---CCeEEEecCCC
Q 020636 217 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVR 290 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~~---~~pvia~GGI~ 290 (323)
++.+++. +..+.+-. ..+..+..+....++|+|.+.. + |++.....+..++.+.++++..+. ..+|.++|||+
T Consensus 102 ~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~ 180 (220)
T PRK05581 102 LQLIKSA-GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGIN 180 (220)
T ss_pred HHHHHHc-CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC
Confidence 4555443 43333322 1233333333445689876643 2 222111122334556666554421 14467899999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
. +++.+++..|+|+|.+||.++..++..+
T Consensus 181 ~-~nv~~l~~~GaD~vvvgSai~~~~d~~~ 209 (220)
T PRK05581 181 A-DNIKECAEAGADVFVAGSAVFGAPDYKE 209 (220)
T ss_pred H-HHHHHHHHcCCCEEEEChhhhCCCCHHH
Confidence 9 7999999999999999999998887544
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00063 Score=61.44 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=58.9
Q ss_pred HHHHHHHHHcC-CCEEEEcC-CCCCCC-CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 236 AEDARIAVQAG-AAGIIVSN-HGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 236 ~e~a~~~~~~G-ad~i~vs~-~gg~~~-~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
.+.++...+.| +|+|.+.. +.|... ...+..++.+.++++... ++||.++||| +.+.+.+.+++|||.+.+|+++
T Consensus 128 ~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~-~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 128 VEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYP-ELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred HHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCC-CCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHH
Confidence 45555565664 99996532 222211 123445677777776543 5799999999 7899999999999999999999
Q ss_pred ccCcchhh
Q 020636 313 CQCPLTEK 320 (323)
Q Consensus 313 ~~~~~~~~ 320 (323)
+..++.++
T Consensus 206 ~~~~d~~~ 213 (229)
T PLN02334 206 FGAPDYAE 213 (229)
T ss_pred hCCCCHHH
Confidence 88776543
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=67.73 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|++.+.+..-.+. .....+.++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.+
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~ 109 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALED 109 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcC
Confidence 45578888999999988543221 112356789999998876 799999999999999999999999999999988877
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 110 ~~ 111 (258)
T PRK01033 110 PD 111 (258)
T ss_pred HH
Confidence 64
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=66.33 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=65.6
Q ss_pred HHHHHHhcCCCEEEecc--------CCH---HH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 217 VKWLQTITKLPILVKGV--------LTA---ED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i--------~~~---e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+..+...++.|+++... .+. .. ++.+.++|||+|.++.. ..++.+.++.+.. ++||+
T Consensus 128 i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVv 196 (258)
T TIGR01949 128 IAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVV 196 (258)
T ss_pred HHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEE
Confidence 33344446888877421 222 22 46778999999998521 2567788877766 79999
Q ss_pred EecCCC--CHHHHHH----HHHcCCCEEEEccccccCcchhh
Q 020636 285 LDGGVR--RGTDVFK----ALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 285 a~GGI~--~~~di~k----al~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+.|||+ +.+++++ ++++||+++.+|+.++..++-.+
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~ 238 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVG 238 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHH
Confidence 999999 6555544 44899999999999988776443
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=65.77 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|++.+.+-.-.+. ..+....++.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+.|.+|+.++..
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d 107 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN 107 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 45578888999999987432221 123445788899998887 799999999999999999999999999999988876
Q ss_pred c
Q 020636 316 P 316 (323)
Q Consensus 316 ~ 316 (323)
|
T Consensus 108 ~ 108 (230)
T TIGR00007 108 P 108 (230)
T ss_pred H
Confidence 5
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0027 Score=56.75 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHcCCceeecCCCC------CC----HHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 020636 89 GEYATARAASAAGTIMTLSSWST------SS----VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (323)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~s~------~~----~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd 158 (323)
.++.-.+.+.+.|..-.++|.-+ .+ ++++.+..+++..+|++ ..|.+.+.+..++..+.. ..++|-+
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~-~~~~~~mi~~a~~l~~~~-~~i~iKI- 84 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETI-SLDAEGMVEEAKELAKLA-PNIVVKI- 84 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEe-eCCHHHHHHHHHHHHHhC-CCeEEEe-
Confidence 35566777777777666666421 22 34455555677889986 456555444444444443 2344332
Q ss_pred CCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHH
Q 020636 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED 238 (323)
Q Consensus 159 ~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~ 238 (323)
|.. .. -.+.++.+++. ++++.+-.+.+.+.
T Consensus 85 -P~T----------------------------------~~--------------Gl~A~~~L~~~-Gi~v~~T~vfs~~Q 114 (213)
T TIGR00875 85 -PMT----------------------------------SE--------------GLKAVKILKKE-GIKTNVTLVFSAAQ 114 (213)
T ss_pred -CCC----------------------------------HH--------------HHHHHHHHHHC-CCceeEEEecCHHH
Confidence 210 00 02344555443 78888889999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
|..+.++|+++|.. +-||--+.+...++.+.++.+.+ +.+..|++ ..+|+..++.+++.+|||.|-+.-.
T Consensus 115 a~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-AS~r~~~~v~~~~~~G~d~vTip~~ 187 (213)
T TIGR00875 115 ALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-ASVRHPRHVLEAALIGADIATMPLD 187 (213)
T ss_pred HHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-eccCCHHHHHHHHHcCCCEEEcCHH
Confidence 99999999998865 33443344445667777766654 23567666 5599999999999999999988743
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0023 Score=57.08 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=88.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|...+.+.+++++++|++.+ ++|.-- .+| +| +-.
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~l--HiDvMD---------G~F-VP--------------------------------N~t 44 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSL--HLDIED---------TSF-IN--------------------------------NIT 44 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEE--EEeccC---------CCc-CC--------------------------------ccc
Confidence 4677778888999999998865 444311 112 11 112
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcCC---------------CC---------CC------
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ------ 259 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~~---------------gg---------~~------ 259 (323)
+..+.++++|+.++.|+=+.. +.+++. .+...++|+|.|.++-- |. +.
T Consensus 45 fG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~ 124 (210)
T PRK08005 45 FGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124 (210)
T ss_pred cCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 334567777777777766663 344544 56667778887776321 10 00
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 260 ----LD-----------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 260 ----~~-----------~~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
.| ++ +..++-+.++++... ...|-+||||. .+-+.++.++|||.+.+|+.+++.+++++
T Consensus 125 ~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~~~d~~~ 202 (210)
T PRK08005 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP-AAECWADGGIT-LRAARLLAAAGAQHLVIGRALFTTANYDV 202 (210)
T ss_pred HHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc-cCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCCCCHHH
Confidence 01 11 233444555544432 34799999997 56677888999999999999988766554
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00031 Score=62.60 Aligned_cols=102 Identities=20% Similarity=0.176 Sum_probs=76.5
Q ss_pred HHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 217 VKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 217 i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+...++..+-..++. .+.+.|+++.+.+.|+|+|.++.-..+. .+..+..++.+..+.+.. ++|+++-||| +.+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGI-NLE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 344555554444555 3578999999999999999886544432 233344578888888776 6999999999 568
Q ss_pred HHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 294 DVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
.+.+.++.||++|.+-|+++..++.++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~a~d~~~a 198 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITSAADPAAA 198 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhcCCCHHHH
Confidence 8999999999999999999988776543
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00058 Score=60.37 Aligned_cols=73 Identities=29% Similarity=0.272 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCC---------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQL---------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~---------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
+-|..+.++|+|.|-.-|...... ....|++....+|.+++ ++||+.+.|+..-.-= -|+++||.+|+
T Consensus 136 ~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~vT~P-mAiaaGAsGVG 212 (242)
T PF04481_consen 136 QLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSAVTAP-MAIAAGASGVG 212 (242)
T ss_pred HHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcchhhHH-HHHHcCCcccc
Confidence 337788888888876533211111 11245666666777777 8999999999886644 47899999999
Q ss_pred Ecccc
Q 020636 308 VSIMP 312 (323)
Q Consensus 308 iG~~~ 312 (323)
+|++.
T Consensus 213 VGSav 217 (242)
T PF04481_consen 213 VGSAV 217 (242)
T ss_pred hhHHh
Confidence 99875
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0035 Score=56.45 Aligned_cols=144 Identities=22% Similarity=0.233 Sum_probs=92.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|...+.+.++++++.|++.+ ++|.=- ..| +| +-.
T Consensus 12 ~ad~~~l~~~i~~l~~~g~d~l--HiDimD---------G~F-VP--------------------------------N~t 47 (223)
T PRK08745 12 SADFARLGEEVDNVLKAGADWV--HFDVMD---------NHY-VP--------------------------------NLT 47 (223)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc---------Ccc-CC--------------------------------Ccc
Confidence 4677778889999999998865 444210 112 11 122
Q ss_pred cCHHHHHHHHHh-cCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcCC---------------CC---------CC-----
Q 020636 212 LSWKDVKWLQTI-TKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ----- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~-~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~~---------------gg---------~~----- 259 (323)
+..+.++++|+. ++.|+=+.. +.+++. +....++|+|.|.++-- |- +.
T Consensus 48 fg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 48 IGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILD 127 (223)
T ss_pred cCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHH
Confidence 446678888887 577877774 345544 66777888888877321 10 00
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 260 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.| ++ +..++-+.++++... .++.|-+||||. .+.+.+..++|||.+.+||.+++.+
T Consensus 128 ~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~~ 206 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNAP 206 (223)
T ss_pred HHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCC
Confidence 01 11 234455555554432 147799999997 5678888899999999999998876
Q ss_pred chhh
Q 020636 317 LTEK 320 (323)
Q Consensus 317 ~~~~ 320 (323)
+.++
T Consensus 207 d~~~ 210 (223)
T PRK08745 207 DYAQ 210 (223)
T ss_pred CHHH
Confidence 6543
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00059 Score=63.43 Aligned_cols=88 Identities=24% Similarity=0.162 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCC-EEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITKLP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~~p-v~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+-. ++--.+.+.++++.+.+.|+|+|.+.+ -..+.+.++.+.++.++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 4577888877532 232345899999999999999998843 2346677777766446889999999 889
Q ss_pred HHHHHHHcCCCEEEEccccc
Q 020636 294 DVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~ 313 (323)
.+.+..+.|+|++.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998765
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00017 Score=65.21 Aligned_cols=69 Identities=25% Similarity=0.298 Sum_probs=55.7
Q ss_pred HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC-eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 244 ~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~-pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
-.|...+.+...++ .+.+.+.+.+.++++.+ +. ||++.||||+.+++.+++..|||+|.+|+.+..+|.
T Consensus 152 ~~g~~~vYle~gs~---~g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 152 YLGMPIVYLEYGGG---AGDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred HcCCCeEEEECCCC---CCCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 45766666643222 23456788899998877 66 999999999999999999999999999999988776
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=67.21 Aligned_cols=71 Identities=23% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|++.+-+-.- +.+..+.+.++.+.+ .+||.+.||||+ +++.+++.+||+.|.+|+.++..
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~ 110 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTK 110 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhC
Confidence 57799999999999976432 223889999999887 799999999998 99999999999999999998876
Q ss_pred c
Q 020636 316 P 316 (323)
Q Consensus 316 ~ 316 (323)
|
T Consensus 111 ~ 111 (253)
T TIGR02129 111 G 111 (253)
T ss_pred C
Confidence 4
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0021 Score=58.17 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=93.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|...+.+.++++++.|++.+ ++|.-- ..| +| +-.
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~--H~DimD---------g~f-vp--------------------------------n~~ 50 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWL--HVDVMD---------GHF-VP--------------------------------NLS 50 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc---------Ccc-CC--------------------------------CcC
Confidence 4677778888999999998765 444211 111 01 112
Q ss_pred cCHHHHHHHHHhc-CCCEEEecc-CCHHH-HHHHHHcCCCEEEEcCCCCCC-C---------------------------
Q 020636 212 LSWKDVKWLQTIT-KLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQ-L--------------------------- 260 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~i-~~~e~-a~~~~~~Gad~i~vs~~gg~~-~--------------------------- 260 (323)
+..+.++++|+.+ +.|+-+|.- .+++. ++.+.++|+|.|.++.-++.. +
T Consensus 51 ~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 51 FGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVL 130 (228)
T ss_pred cCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHH
Confidence 3456788998887 788888864 55554 567788999999885322211 0
Q ss_pred ---------------------CCC---cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 261 ---------------------DYV---PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 261 ---------------------~~~---~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
++. +..++-+.++++..+ ...|.++|||+. +.+.++..+|||.+.+||++...+
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~-~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~a~ 208 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYP-HLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFKAK 208 (228)
T ss_pred HHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcc-cCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhCCC
Confidence 000 112333444444332 478999999986 577788899999999999998877
Q ss_pred chhh
Q 020636 317 LTEK 320 (323)
Q Consensus 317 ~~~~ 320 (323)
++++
T Consensus 209 d~~~ 212 (228)
T PTZ00170 209 DRKQ 212 (228)
T ss_pred CHHH
Confidence 6544
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00057 Score=63.36 Aligned_cols=90 Identities=24% Similarity=0.251 Sum_probs=67.9
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC--CCeEEEecCCCC
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRR 291 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~~pvia~GGI~~ 291 (323)
..++.+|+..+ ...+.-.+.+.+++..+.++|+|+|.+.+- ..+.+.++.+.++. ++||.++|||.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~asGGIt- 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLEASGGIT- 237 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEEEECCCC-
Confidence 34788888775 334444678999999999999999988652 22444554444433 78999999995
Q ss_pred HHHHHHHHHcCCCEEEEccccccC
Q 020636 292 GTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.+.+..+.|||++.+|......
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 238 LENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHHcCC
Confidence 788999999999999999877655
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00029 Score=62.79 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCC-CCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
..++-.|+++.+.||..|.--+.. |+ ..+.-+...|.-|.+.. ++|||+|-||.++.|+..++++|||+|++-++
T Consensus 138 ~dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 138 TDDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred CCCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 356777999999999888532110 11 11344567777777777 89999999999999999999999999999987
Q ss_pred cccC
Q 020636 312 PCQC 315 (323)
Q Consensus 312 ~~~~ 315 (323)
....
T Consensus 214 iA~A 217 (262)
T COG2022 214 IARA 217 (262)
T ss_pred hhcc
Confidence 7553
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.5e-05 Score=67.54 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|++.+.+-.-.+ ...+.+...+.+.++.+.+ .+||.+.||||+.+|+.+++.+||+.|.+|+..+.+
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLda-a~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~ 108 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDA-AKEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALED 108 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHH-HCCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEEccC-cccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhc
Confidence 3557777789999998743111 1233466788999999887 699999999999999999999999999999998887
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|.+
T Consensus 109 ~~~ 111 (229)
T PF00977_consen 109 PEL 111 (229)
T ss_dssp CHH
T ss_pred hhH
Confidence 754
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00024 Score=64.37 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=63.1
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+-|+...+.|+|.+.+..-.+. .+.....+.+.++.+.+ .+||.+.||||+.+|+.+++.+||+.|.+||..+.
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~ 112 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLP 112 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceecc
Confidence 346688888999999987542221 13456788999998877 79999999999999999999999999999998766
Q ss_pred C
Q 020636 315 C 315 (323)
Q Consensus 315 ~ 315 (323)
+
T Consensus 113 ~ 113 (233)
T cd04723 113 S 113 (233)
T ss_pred c
Confidence 5
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00023 Score=63.83 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=59.3
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
|..+...|...|.+. ..|. ..+.+.+..+++.+. ++||+..|||||.+++.+++.+|||.|.+|+.+..+|.+
T Consensus 141 A~aae~~g~~ivyLe-~SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p~~ 213 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YSGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNA 213 (219)
T ss_pred HHHHHHcCCeEEEeC-CCCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCHHH
Confidence 567778898888776 3232 256778888887653 689999999999999999999999999999999887654
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00043 Score=60.15 Aligned_cols=77 Identities=25% Similarity=0.319 Sum_probs=58.9
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.+.++++.+.+.|+|++.++.--.+. .+..+..++.+.++.+.. ++||++-||| +.+++.+++.+||++|.+-
T Consensus 101 S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 101 SCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVI 177 (180)
T ss_dssp EESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEES
T ss_pred ecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEE
Confidence 4688999999999999999997532221 222345678888888877 7999999999 7899999999999999987
Q ss_pred cc
Q 020636 310 IM 311 (323)
Q Consensus 310 ~~ 311 (323)
++
T Consensus 178 ~a 179 (180)
T PF02581_consen 178 SA 179 (180)
T ss_dssp HH
T ss_pred ee
Confidence 64
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0047 Score=55.06 Aligned_cols=145 Identities=24% Similarity=0.266 Sum_probs=95.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.....+.+++++++|++.+ ++|.= -.+| +| +-.
T Consensus 12 saD~~~l~~el~~~~~agad~i--H~DVM---------DghF-VP--------------------------------NiT 47 (220)
T COG0036 12 SADFARLGEELKALEAAGADLI--HIDVM---------DGHF-VP--------------------------------NIT 47 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEE--EEecc---------CCCc-CC--------------------------------Ccc
Confidence 4677778889999999998865 44421 0122 11 112
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcC----C-----------C---------CCCC-----
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSN----H-----------G---------ARQL----- 260 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~----~-----------g---------g~~~----- 260 (323)
+-...++++++.++.|+=+.. +.+++. +....++|||.|.++- | | ++.+
T Consensus 48 fGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~ 127 (220)
T COG0036 48 FGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEP 127 (220)
T ss_pred cCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 335578888888788888774 455554 6777889999988742 1 1 0100
Q ss_pred -----C-----------CC----cchHHHHHHHHHHhcC--CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 261 -----D-----------YV----PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 261 -----~-----------~~----~~~~~~l~~i~~~~~~--~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
| ++ +..++-++++++.... ++-|-+||||.. +-+-++.++|||.++.||.+++.++|
T Consensus 128 ~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~-~t~~~~~~AGad~~VaGSalF~~~d~ 206 (220)
T COG0036 128 VLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINL-ETIKQLAAAGADVFVAGSALFGADDY 206 (220)
T ss_pred HHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH-HHHHHHHHcCCCEEEEEEEEeCCccH
Confidence 1 12 3345556666665532 567899999964 55677777999999999999999887
Q ss_pred hhh
Q 020636 319 EKI 321 (323)
Q Consensus 319 ~~~ 321 (323)
.+.
T Consensus 207 ~~~ 209 (220)
T COG0036 207 KAT 209 (220)
T ss_pred HHH
Confidence 654
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00032 Score=63.60 Aligned_cols=79 Identities=20% Similarity=0.127 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|+|.+.+-.-.+. .+.....+.+.++.+.. ..|+...|||||.+|+.+++.+||+.|.+||..+.+
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a--~~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAA--EGVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc--CCCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 45678888999999987543322 13455678888888744 359999999999999999999999999999999888
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|.+
T Consensus 109 p~~ 111 (232)
T PRK13586 109 FNL 111 (232)
T ss_pred HHH
Confidence 753
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00032 Score=63.99 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|+|.+.+-.--+ ...+.+...+.+.++.+.+ .||.+.|||||.+|+.+++.+||+.|.+||..+.+
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~-a~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~ 108 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSK-AIENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED 108 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCC-cccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 4558888899999998743211 1223456788999998875 59999999999999999999999999999999988
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 109 p~ 110 (241)
T PRK14114 109 PS 110 (241)
T ss_pred HH
Confidence 84
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00075 Score=62.66 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh-----cCCCeEEEecCC
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGV 289 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~pvia~GGI 289 (323)
+.++.+|+..+..-+.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.+ +.++.+.++|||
T Consensus 171 ~av~~~r~~~~~~kIeVEv~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGGI 240 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEVEVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGGI 240 (278)
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECCC
Confidence 34777777653222334578999999999999999988763 234444444433 236889999999
Q ss_pred CCHHHHHHHHHcCCCEEEEccccc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
+.+.+.+....|+|.+.+|....
T Consensus 241 -~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 241 -TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhc
Confidence 89999999999999999999776
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.004 Score=55.67 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC---CCeEEEecCCCC
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRR 291 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~pvia~GGI~~ 291 (323)
+.++.+++. ++++-+-.+.+.+.|..+.++|+++|.. +-||--+.+...++.+.++.+.+.. +..|++ .|+++
T Consensus 92 ~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~ 167 (211)
T cd00956 92 KAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRN 167 (211)
T ss_pred HHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCC
Confidence 345566554 7888888999999999999999998543 5555444455667777777665521 344444 66999
Q ss_pred HHHHHHHHHcCCCEEEEccc
Q 020636 292 GTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~ 311 (323)
..++..++.+|||.|-+.-.
T Consensus 168 ~~ei~~a~~~Gad~vTv~~~ 187 (211)
T cd00956 168 PQHVIEAALAGADAITLPPD 187 (211)
T ss_pred HHHHHHHHHcCCCEEEeCHH
Confidence 99999999999999999843
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00059 Score=59.35 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=61.3
Q ss_pred CHHHHHHHHHhcCCCEE--Eec---------cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 213 SWKDVKWLQTITKLPIL--VKG---------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~--vK~---------i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
..++|+.+|+.+++||| +|. ..+.+++..+.++|+|.|-+........ .+..+++.++++.. .
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~---~ 93 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY---Q 93 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT---S
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC---c
Confidence 46789999999999984 552 1578999999999999999876443221 33345677776543 4
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++ ..|.|-+|...|..+|+|.| |+-|.|.
T Consensus 94 l~M--ADist~ee~~~A~~~G~D~I--~TTLsGY 123 (192)
T PF04131_consen 94 LVM--ADISTLEEAINAAELGFDII--GTTLSGY 123 (192)
T ss_dssp EEE--EE-SSHHHHHHHHHTT-SEE--E-TTTTS
T ss_pred EEe--eecCCHHHHHHHHHcCCCEE--EcccccC
Confidence 444 55899999999999999987 5556664
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00054 Score=62.57 Aligned_cols=76 Identities=28% Similarity=0.167 Sum_probs=60.1
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
++...+.|++.+.+.---+. .+.+...+.+.++.+.+ .+||.+.|||||.+|+.+++.+||+.|.+||..+.+|.+
T Consensus 37 a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~ 112 (243)
T TIGR01919 37 AKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWW 112 (243)
T ss_pred HHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHH
Confidence 45556778877765321111 13456788999999887 699999999999999999999999999999999888854
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0064 Score=56.82 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=59.7
Q ss_pred CCHHHHHHHH-HcCCCEEEEcCCCCCCC-CCC-cchHHHHHHHHHHhcCCCeEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSNHGARQL-DYV-PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~~gg~~~-~~~-~~~~~~l~~i~~~~~~~~pvia~GG--I~~~~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+.++-..-+.. ++. ...++.|.++.+.+ ++|+++-|| |. .+++.+++.+|++.|=+
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINF 232 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEe
Confidence 4678998888 89999999953221111 222 35789999998887 799999998 76 57899999999999999
Q ss_pred ccccc
Q 020636 309 SIMPC 313 (323)
Q Consensus 309 G~~~~ 313 (323)
+|.+.
T Consensus 233 ~T~~~ 237 (286)
T PRK06801 233 YTGMS 237 (286)
T ss_pred hhHHH
Confidence 98764
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0045 Score=60.20 Aligned_cols=191 Identities=16% Similarity=0.137 Sum_probs=110.7
Q ss_pred cccceEECcccccccCCcHHHHHHHHHHHHcCCce-eecC-----CCCCCHHHHHhcCC-CceeEEeeecCChHHHHHHH
Q 020636 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-TLSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLV 142 (323)
Q Consensus 70 ~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~-~vs~-----~s~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~ 142 (323)
+.-|.++-++-. .+.+.-+.+++.....+..+ =+|+ +....++++++..+ .+....|.. .|...+. +
T Consensus 170 ~~~p~L~vALD~---~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~-~Di~~~v--v 243 (391)
T PRK13307 170 WDPPYLQVALDL---PDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKT-LDTGNLE--A 243 (391)
T ss_pred cccceEEEecCC---CCHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecc-cChhhHH--H
Confidence 345666665432 22333345555555443332 2443 12234566666544 356666654 4655432 6
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
+.+.++|++.+.++.-.+. ....+.++.+++
T Consensus 244 ~~~a~aGAD~vTVH~ea~~-------------------------------------------------~ti~~ai~~akk 274 (391)
T PRK13307 244 RMAADATADAVVISGLAPI-------------------------------------------------STIEKAIHEAQK 274 (391)
T ss_pred HHHHhcCCCEEEEeccCCH-------------------------------------------------HHHHHHHHHHHH
Confidence 6777889888876632110 001123455555
Q ss_pred hcCCCEEEec--cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 020636 223 ITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 223 ~~~~pv~vK~--i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~ 300 (323)
. +.-+.+-. ..++.+.......++|.|.+.. +....+..+.++-+.++++. ..+++|.++|||. .+++.+++.
T Consensus 275 ~-GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~eti~~l~~ 349 (391)
T PRK13307 275 T-GIYSILDMLNVEDPVKLLESLKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VENVEEALK 349 (391)
T ss_pred c-CCEEEEEEcCCCCHHHHHHHhhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HHHHHHHHH
Confidence 3 44344422 2344443333488999998852 11111234566777777765 2368999999999 788989999
Q ss_pred cCCCEEEEccccccCcchhh
Q 020636 301 LGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 301 lGAd~V~iG~~~~~~~~~~~ 320 (323)
+|||.+.+||.+.+.++.++
T Consensus 350 aGADivVVGsaIf~a~Dp~~ 369 (391)
T PRK13307 350 AGADILVVGRAITKSKDVRR 369 (391)
T ss_pred cCCCEEEEeHHHhCCCCHHH
Confidence 99999999999988776544
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.015 Score=54.36 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=60.6
Q ss_pred cCCHHHHHHHHH-cCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec--CCCCHHHHHHHHHcCCCEE
Q 020636 233 VLTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGI 306 (323)
Q Consensus 233 i~~~e~a~~~~~-~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G--GI~~~~di~kal~lGAd~V 306 (323)
..++|+|+.+.+ .|+|++.++- ||-.. ....-.++.|.++.+.+ ++|+++=| ||.. +++.+++.+|++.|
T Consensus 152 ~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~~-e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 152 LADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIPE-EQIKKAIKLGIAKI 227 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCCH-HHHHHHHHcCCCEE
Confidence 358999999996 9999999752 43211 11234588999999988 79999999 8864 67999999999999
Q ss_pred EEccccc
Q 020636 307 FVSIMPC 313 (323)
Q Consensus 307 ~iG~~~~ 313 (323)
-++|-+.
T Consensus 228 Nv~T~l~ 234 (282)
T TIGR01859 228 NIDTDCR 234 (282)
T ss_pred EECcHHH
Confidence 9999764
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.015 Score=53.34 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=58.7
Q ss_pred HHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.++.+...| +|+|+|++.+- +.+.+++.|.++++..+ +.||+..||+ +++.+.+++.. ||+|.+||.|-.
T Consensus 160 ~e~a~~~~~~~~aDavivtG~~T----G~~~d~~~l~~vr~~~~-~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~ 232 (257)
T TIGR00259 160 ESIALDTVERGLADAVILSGKTT----GTEVDLELLKLAKETVK-DTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKK 232 (257)
T ss_pred HHHHHHHHHhcCCCEEEECcCCC----CCCCCHHHHHHHHhccC-CCeEEEECCC-CHHHHHHHHhh-CCEEEECCCccc
Confidence 35577777666 99999988542 33578888988877553 6899999998 56888888887 999999999875
Q ss_pred Ccchh
Q 020636 315 CPLTE 319 (323)
Q Consensus 315 ~~~~~ 319 (323)
...|+
T Consensus 233 ~G~~~ 237 (257)
T TIGR00259 233 DGVFN 237 (257)
T ss_pred CCccC
Confidence 44333
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0099 Score=55.24 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCC
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 291 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~ 291 (323)
+.++.+|+..+...+.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.+ ..++.|.++||| +
T Consensus 177 ~av~~~r~~~~~~kIeVEv~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI-~ 245 (277)
T TIGR01334 177 GAIGRLKQTAPERKITVEADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGI-N 245 (277)
T ss_pred HHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCC-C
Confidence 45788887654222444568999999999999999988752 233333433333 346889999999 5
Q ss_pred HHHHHHHHHcCCCEEEEccccccCcch
Q 020636 292 GTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
.+.+.+...+|+|.+.+|.+....|..
T Consensus 246 ~~ni~~ya~~GvD~is~gal~~a~~~D 272 (277)
T TIGR01334 246 PENIADYIEAGIDLFITSAPYYAAPCD 272 (277)
T ss_pred HHHHHHHHhcCCCEEEeCcceecCccc
Confidence 788888889999999999987776654
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.015 Score=52.31 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~ 292 (323)
.++.+++. ++++-+-.+.+++.+..+.++||++|.. +-||--|.+......+.++.+.+ ..+..|++.+ +|+.
T Consensus 97 Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~~ 172 (222)
T PRK12656 97 AIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKNV 172 (222)
T ss_pred HHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCCH
Confidence 45555543 7889888999999999999999988754 44553344444455666655544 3356666655 9999
Q ss_pred HHHHHHHHcCCCEEEEcccc
Q 020636 293 TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~ 312 (323)
.++.+++.+|||.+-+.-.+
T Consensus 173 ~~v~~a~~~G~d~vTvp~~v 192 (222)
T PRK12656 173 AQVNKAFALGAQAVTAGPDV 192 (222)
T ss_pred HHHHHHHHcCCCEEecCHHH
Confidence 99999999999999887533
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0041 Score=57.40 Aligned_cols=85 Identities=18% Similarity=0.099 Sum_probs=63.9
Q ss_pred cCHHHHHHHHHhcCCCEEEecc-CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 212 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i-~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
-+.++|++|++.+++||+-+.- ....+++.+.++|+|.|.-+..- .|.-+.+..+++.. ++|++ .+++
T Consensus 52 ~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~l~M--AD~s 120 (283)
T cd04727 52 ADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KVPFV--CGAR 120 (283)
T ss_pred CCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CCcEE--ccCC
Confidence 3578999999999999987643 34899999999999999532211 12345666666554 45555 5799
Q ss_pred CHHHHHHHHHcCCCEEE
Q 020636 291 RGTDVFKALALGASGIF 307 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~ 307 (323)
|-++++.+..+|||.|.
T Consensus 121 tleEal~a~~~Gad~I~ 137 (283)
T cd04727 121 NLGEALRRISEGAAMIR 137 (283)
T ss_pred CHHHHHHHHHCCCCEEE
Confidence 99999999999999874
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.015 Score=53.30 Aligned_cols=75 Identities=27% Similarity=0.311 Sum_probs=57.6
Q ss_pred HHHHHH-HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 237 EDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 237 e~a~~~-~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+.++.+ ...++|+|+|++.. .+.+++.+.|.++++.+ .+||++.+|+ |.+-+.+.|.. ||++.+||.|...
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKD 233 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeC
Confidence 445555 57899999998742 23467899999999988 4999998887 56777777754 9999999999765
Q ss_pred cchh
Q 020636 316 PLTE 319 (323)
Q Consensus 316 ~~~~ 319 (323)
-.|+
T Consensus 234 G~~~ 237 (254)
T PF03437_consen 234 GKWE 237 (254)
T ss_pred CEeC
Confidence 5543
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0044 Score=57.25 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=64.3
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+.++|++|++.+++||+-|. +....+|+.+.++|+|.|.-|..- .|.-+.+..++... ++|++ .|++|
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpfm--ad~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPFV--CGARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCEE--ccCCC
Confidence 57799999999999998884 355899999999999999643211 12344555555544 45554 57999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
-++++.++..|||.|.-
T Consensus 124 l~EAlrai~~GadmI~T 140 (287)
T TIGR00343 124 LGEALRRINEGAAMIRT 140 (287)
T ss_pred HHHHHHHHHCCCCEEec
Confidence 99999999999998754
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0012 Score=56.89 Aligned_cols=91 Identities=23% Similarity=0.252 Sum_probs=64.9
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH---HhcCCCeEEEecCCC
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK---ATQGRIPVFLDGGVR 290 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~---~~~~~~pvia~GGI~ 290 (323)
+.++.+++..+ .+.+.=.+.+.++++.+.++|+|.|.+.|. +.+.++++.+ ....++.|.++|||
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~----------~~~~~~~~v~~l~~~~~~v~ie~SGGI- 136 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM----------SPEDLKEAVEELRELNPRVKIEASGGI- 136 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES-----------CHHHHHHHHHHHHHHTTTSEEEEESSS-
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc----------CHHHHHHHHHHHhhcCCcEEEEEECCC-
Confidence 34777887764 332444678899999999999999988762 2244444443 44557999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+.+....|+|.+.+|+.....|
T Consensus 137 ~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 137 TLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp STTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred CHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 56788888899999999998765544
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.022 Score=52.06 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=111.3
Q ss_pred ccceeecCcccccceEE-CcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHH
Q 020636 60 DMNTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVV 138 (323)
Q Consensus 60 d~~t~i~g~~~~~Pi~i-aPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~ 138 (323)
++-+.+.+.....+.++ .|.+.- +.+--..+|+.++++|+.++-+.. .. =+. .+..|| .-..+-+
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~--~k----pRt--s~~sf~---G~G~~gl 68 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGA--YK----PRT--SAASFQ---GLGLQGI 68 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecc--cC----CCC--CCcccC---CCCHHHH
Confidence 34444445555545444 554432 233345899999999998887742 10 011 233444 2234455
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
..+.+..++.|...+- ++-.+ +.-+.-..+ +.+-. .+. .-..+.+.++
T Consensus 69 ~~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~-----vdilq---Igs-------------------~~~~n~~LL~ 116 (250)
T PRK13397 69 RYLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY-----LDVIQ---VGA-------------------RNMQNFEFLK 116 (250)
T ss_pred HHHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc-----CCEEE---ECc-------------------ccccCHHHHH
Confidence 5666667778876443 22111 111111111 00000 000 0012355666
Q ss_pred HHHHhcCCCEEEe-c-cCCHHH----HHHHHHcCCCEEEEcCCCCCCCC---CCcchHHHHHHHHHHhcCCCeEEEe---
Q 020636 219 WLQTITKLPILVK-G-VLTAED----ARIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLD--- 286 (323)
Q Consensus 219 ~i~~~~~~pv~vK-~-i~~~e~----a~~~~~~Gad~i~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~~pvia~--- 286 (323)
.+.+ ++.||++| | ..++++ ++.+.+.|..-|++.-+|-+... .-...+..++.+++.. .+|||++
T Consensus 117 ~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~SH 193 (250)
T PRK13397 117 TLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVSH 193 (250)
T ss_pred HHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCCC
Confidence 6655 58999999 4 467777 45556788877776543422221 1134566777777766 6899997
Q ss_pred -cCCCC--HHHHHHHHHcCCCEEEEcccc
Q 020636 287 -GGVRR--GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 287 -GGI~~--~~di~kal~lGAd~V~iG~~~ 312 (323)
+|.|. ..-...|+++|||+++|-+.+
T Consensus 194 s~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 194 STGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 44433 133567888999999998766
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.039 Score=53.27 Aligned_cols=210 Identities=21% Similarity=0.253 Sum_probs=114.9
Q ss_pred cCCCCCccceeecCccc--ccc-eEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEee
Q 020636 54 IDVSKIDMNTTVLGFKI--SMP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 130 (323)
Q Consensus 54 ~~~~~~d~~t~i~g~~~--~~P-i~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy 130 (323)
+....-++.+.+.+..+ ..| +++.|...- +.+.-..+|+.+++.|+.+.-...- + -+. .++.||
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~iaGpc~iE---~~~~~~~~A~~lk~~g~~~~r~~~~-k-----pRt--sp~~f~-- 164 (360)
T PRK12595 98 RKKKPEDTIVDVKGEVIGDGNQSFIFGPCSVE---SYEQVEAVAKALKAKGLKLLRGGAF-K-----PRT--SPYDFQ-- 164 (360)
T ss_pred CccCCCCCEEEECCEEecCCCeeeEEeccccc---CHHHHHHHHHHHHHcCCcEEEcccc-C-----CCC--CCcccc--
Confidence 44444455555554443 234 455664331 2334468899999999888775310 0 011 233444
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCC
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (323)
.-..+....+-+.+++.|...+. ++-.+ +.-+.-..+ ++ +-.+.+ .-
T Consensus 165 -g~~~e~l~~L~~~~~~~Gl~~~t-~v~d~----~~~~~l~~~-vd----~lkI~s----------------------~~ 211 (360)
T PRK12595 165 -GLGVEGLKILKQVADEYGLAVIS-EIVNP----ADVEVALDY-VD----VIQIGA----------------------RN 211 (360)
T ss_pred -CCCHHHHHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHHh-CC----eEEECc----------------------cc
Confidence 22345555666667788876543 32111 112221111 11 000000 00
Q ss_pred ccCHHHHHHHHHhcCCCEEEecc--CCHHHH----HHHHHcCCCEEEEcCCCCCCCC---CCcchHHHHHHHHHHhcCCC
Q 020636 211 SLSWKDVKWLQTITKLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a----~~~~~~Gad~i~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~~ 281 (323)
..+++.++.+.+ ++.||++|-- .+.++. ..+.+.|.+-|++.-+|-+... .....+..++.+++.. .+
T Consensus 212 ~~n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~ 288 (360)
T PRK12595 212 MQNFELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HL 288 (360)
T ss_pred ccCHHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CC
Confidence 123566776655 5889999944 578774 4445688877777644533221 1123677888888766 68
Q ss_pred eEEEecCCCCH----H--HHHHHHHcCCCEEEEcccc
Q 020636 282 PVFLDGGVRRG----T--DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 282 pvia~GGI~~~----~--di~kal~lGAd~V~iG~~~ 312 (323)
||+.|.+=..| . -...|+++|||+++|-+.|
T Consensus 289 PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 289 PVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 99996432222 2 3456788999999999887
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00081 Score=60.40 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=54.7
Q ss_pred cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 245 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 245 ~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
.|...|.+-..||. +.+.+.+.+..+++.+. ++||+..||||+.+++.+++.+|||.|.+|+.+..+|.+
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~ 217 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDK 217 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHH
Confidence 57777776433332 23445777888887763 699999999999999999999999999999999887643
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.019 Score=51.39 Aligned_cols=91 Identities=21% Similarity=0.167 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~ 292 (323)
.++.+++. ++++-+-.+.+.+.|..+.++|+++|.. +-||--|.+...+..+.++.+.+. .+..|++ ..+|+.
T Consensus 93 a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~~ 168 (214)
T PRK01362 93 AVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRHP 168 (214)
T ss_pred HHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCCH
Confidence 45555443 7888888999999999999999998865 445544455566777777766552 2444554 569999
Q ss_pred HHHHHHHHcCCCEEEEcc
Q 020636 293 TDVFKALALGASGIFVSI 310 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~ 310 (323)
.++.++..+|||.+-++-
T Consensus 169 ~~v~~~~~~G~d~iTi~~ 186 (214)
T PRK01362 169 MHVLEAALAGADIATIPY 186 (214)
T ss_pred HHHHHHHHcCCCEEecCH
Confidence 999999999999998874
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00049 Score=62.01 Aligned_cols=75 Identities=21% Similarity=0.207 Sum_probs=50.1
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhhc
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKIN 322 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~~ 322 (323)
.-.|...|.+-...|+. ++.+ +.+.++++.+ .++|+|..|||||.+++.+++..|||.|++|+.|-..++.+++.
T Consensus 150 ~~~g~~~iYLEaGSGa~---~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~ 224 (230)
T PF01884_consen 150 EYLGMPIIYLEAGSGAY---GPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEAL 224 (230)
T ss_dssp HHTT-SEEEEE--TTSS---S-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHH
T ss_pred HHhCCCEEEEEeCCCCC---CCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHH
Confidence 34788888875422221 1222 3444555554 38999999999999999999999999999999998877666543
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0045 Score=57.10 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=64.2
Q ss_pred HHHHHHhcCCCEEEe---c--cCCHH-----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 217 VKWLQTITKLPILVK---G--VLTAE-----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 217 i~~i~~~~~~pv~vK---~--i~~~e-----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
+..-.+.|++|+++- + +.+.. -++.+.+.|||.|.+.- +. +.+.++.+.+ .+||+..
T Consensus 132 v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVvia 198 (264)
T PRK08227 132 LVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIVIA 198 (264)
T ss_pred HHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEEEe
Confidence 333445689998772 1 11222 27888999999998732 12 6677887766 7999999
Q ss_pred cCCCCH-HHHH----HHHHcCCCEEEEccccccCcchhhh
Q 020636 287 GGVRRG-TDVF----KALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 287 GGI~~~-~di~----kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
||=+.. .|++ .++..||.+|.+||=...+++-.++
T Consensus 199 GG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~ 238 (264)
T PRK08227 199 GGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAM 238 (264)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHH
Confidence 999853 3344 5677899999999988777665444
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00064 Score=62.41 Aligned_cols=73 Identities=26% Similarity=0.207 Sum_probs=60.2
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+.|+...+.|++.+-|---+| +.+...+.+.++.+ + .+||-+-||||+ +++.++|.+||+-|.|||.++.
T Consensus 45 P~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 45 AAEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 35678899999999987543222 23456888989888 6 699999999997 9999999999999999999988
Q ss_pred C
Q 020636 315 C 315 (323)
Q Consensus 315 ~ 315 (323)
+
T Consensus 117 ~ 117 (262)
T PLN02446 117 D 117 (262)
T ss_pred C
Confidence 7
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=58.34 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=52.9
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+..+...|++.|.+-...|. ..+.+.+.+.++++.+ ++|++.-||||+.+++.+++..|||+|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45666889999887432222 2234578888888887 899999999999999999999999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0032 Score=56.27 Aligned_cols=87 Identities=18% Similarity=0.128 Sum_probs=65.9
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCC-CC--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~-~~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
-+.+.+++..+.+.|+|++.++--..+. .. ..+..++.+.++.+.. .++||++-|||. .+++.++++.||++|.+
T Consensus 108 S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAv 185 (211)
T PRK03512 108 STHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAV 185 (211)
T ss_pred eCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 3578899999999999999986533221 11 1233466677766542 169999999997 79999999999999999
Q ss_pred ccccccCcchhh
Q 020636 309 SIMPCQCPLTEK 320 (323)
Q Consensus 309 G~~~~~~~~~~~ 320 (323)
-+.++..++.++
T Consensus 186 isai~~~~d~~~ 197 (211)
T PRK03512 186 VSAITQAADWRA 197 (211)
T ss_pred hhHhhCCCCHHH
Confidence 999988776654
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.013 Score=54.88 Aligned_cols=79 Identities=24% Similarity=0.373 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHcCCCEEEEc--C-CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG--I~~~~di~kal~lGAd~V~i 308 (323)
.++++|+.+.+.|+|++-++ + ||-..-....-.++.|.++.+.+. ++|+++=|| |. .+++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 57999999999999999998 3 553321122356889999998872 499999998 75 47799999999999999
Q ss_pred cccccc
Q 020636 309 SIMPCQ 314 (323)
Q Consensus 309 G~~~~~ 314 (323)
+|.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
|
|
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0035 Score=58.44 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=67.9
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+ ..-+.-.+.+.|+++.+.++|+|.|.+.|. +.+.+.++.+.+++++.+.++||| +.+
T Consensus 185 ~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI-~~~ 253 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNI-DMT 253 (290)
T ss_pred HHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCC-CHH
Confidence 45788888764 222333568999999999999999988772 445566666666667899999999 567
Q ss_pred HHHHHHHcCCCEEEEccccc
Q 020636 294 DVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~ 313 (323)
.+.+....|+|.+.+|....
T Consensus 254 ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 254 TISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 78888889999999998765
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.016 Score=54.02 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCC
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 291 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~ 291 (323)
+.++.+|+..+...+.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.++ .++.+-++||| +
T Consensus 178 ~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~~~~~leaSGGI-~ 246 (284)
T PRK06096 178 GAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLAPHCTLSLAGGI-N 246 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-C
Confidence 45778887764333444678999999999999999988662 3344445444432 47889999999 5
Q ss_pred HHHHHHHHHcCCCEEEEcccccc
Q 020636 292 GTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.+.+...+|+|.+.+|.....
T Consensus 247 ~~ni~~yA~tGvD~Is~gal~~a 269 (284)
T PRK06096 247 LNTLKNYADCGIRLFITSAPYYA 269 (284)
T ss_pred HHHHHHHHhcCCCEEEECccccC
Confidence 78888888899999999986444
|
|
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0033 Score=58.49 Aligned_cols=88 Identities=19% Similarity=0.159 Sum_probs=68.5
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+ .+-+.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.++++.++-++||| +.+
T Consensus 182 ~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI-~~~ 250 (281)
T PRK06106 182 EAIRRARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRI-TPE 250 (281)
T ss_pred HHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCC-CHH
Confidence 45788888764 122333578999999999999999988772 446666766666667899999999 567
Q ss_pred HHHHHHHcCCCEEEEccccc
Q 020636 294 DVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~ 313 (323)
.+.+....|+|.+.+|....
T Consensus 251 ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 251 TAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHhcCCCEEEeChhhc
Confidence 78888889999999998665
|
|
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0019 Score=56.99 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=74.1
Q ss_pred CHHHHHHHHHhcCC-CEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~~-pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.++.+-.+.+..+. |++ .+.+.++.+++++.|+..|-|.|+.- ..-.-++.....+.+..+.++-+++..||.|
T Consensus 174 ~lk~l~k~~K~L~me~LV--EVn~~eEm~raleiGakvvGvNNRnL---~sFeVDlstTskL~E~i~kDvilva~SGi~t 248 (289)
T KOG4201|consen 174 LLKELYKISKDLGMEPLV--EVNDEEEMQRALEIGAKVVGVNNRNL---HSFEVDLSTTSKLLEGIPKDVILVALSGIFT 248 (289)
T ss_pred HHHHHHHHHHHcCCccee--eeccHHHHHHHHHhCcEEEeecCCcc---ceeeechhhHHHHHhhCccceEEEeccCCCC
Confidence 34444455555543 332 46889999999999999998877533 2222233334444555655788999999999
Q ss_pred HHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 292 GTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
++|+.+.-..|..+|.+|..++...+-++
T Consensus 249 pdDia~~q~~GV~avLVGEslmk~sDp~k 277 (289)
T KOG4201|consen 249 PDDIAKYQKAGVKAVLVGESLMKQSDPKK 277 (289)
T ss_pred HHHHHHHHHcCceEEEecHHHHhccCHHH
Confidence 99999999999999999999988766544
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0021 Score=57.11 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=60.5
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
..+.|+++++.++ +.|-...+.+.++++.+.++|++.|+- -+ .+.+++..+.+ . ++|++- |+.|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs-P~---------~~~~v~~~~~~-~--~i~~iP--G~~T 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS-PG---------LTPELAKHAQD-H--GIPIIP--GVAT 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHHHH-c--CCcEEC--CCCC
Confidence 4567899988874 445566789999999999999999943 21 12244433332 2 577776 9999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
+.++.+|+++||+.|=+
T Consensus 111 ptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 111 PSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999865
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.002 Score=58.37 Aligned_cols=107 Identities=24% Similarity=0.397 Sum_probs=70.5
Q ss_pred CceeEEeeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc
Q 020636 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (323)
Q Consensus 123 ~~~~~QLy~~~d~~----~~~~~~~~a~~~---G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
+..|+.|-+-.|+. ...+.+++++.. |+..+-++.|.|+..+|..++.-.+-+| .+.
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmP------------lg~---- 153 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMP------------LGS---- 153 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC------------CCc----
Confidence 34577775544432 234566666666 9988877888888776666653222111 010
Q ss_pred cchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.+ ...-.+++.|+.+++..++||++- |+.+++|+..+.+.|+|+|.+.
T Consensus 154 -------pIGs-g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 154 -------PIGS-GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred -------CCCC-CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 0000 012235788899999888999888 5899999999999999999884
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.011 Score=53.04 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=46.8
Q ss_pred HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 244 ~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
-.|...+.+--.||. +.|...+.++.++. ..++|.-|||||++.+.++..+|||.+.+|+.+-.++
T Consensus 162 ~~g~~~~YlEagsga---~~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 162 YLGMPVVYLEAGSGA---GDPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred HhCCeEEEEEecCCC---CCCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 356666655332221 23445555544432 4599999999999999999999999999999887665
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=52.56 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=67.7
Q ss_pred HhcCCCEEEec--cCCHHHHHHHHH-cCCCEEEEcCCCCC--CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHH
Q 020636 222 TITKLPILVKG--VLTAEDARIAVQ-AGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296 (323)
Q Consensus 222 ~~~~~pv~vK~--i~~~e~a~~~~~-~Gad~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ 296 (323)
+.++.-+.+=. +.++++...-++ +|+|.+.+ |-|+ |..+..++++.|..+++.......|-+.||| +++++-
T Consensus 103 ~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~ 179 (217)
T COG0269 103 KEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIP 179 (217)
T ss_pred HHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHH
Confidence 33455555543 456677555554 99999999 4443 2334445577888888766323789999998 579999
Q ss_pred HHHHcCCCEEEEccccccCcchh
Q 020636 297 KALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 297 kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
.+...|++.|.+||.+-+..+-.
T Consensus 180 ~~~~~~~~ivIvGraIt~a~dp~ 202 (217)
T COG0269 180 LFKGIGADIVIVGRAITGAKDPA 202 (217)
T ss_pred HHhcCCCCEEEECchhcCCCCHH
Confidence 99999999999999998876643
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0038 Score=58.35 Aligned_cols=90 Identities=23% Similarity=0.234 Sum_probs=68.2
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+ .+ +.-.+.+.++++.+.++|+|.|.+.|. +.+.++++.+..+.++.+.++||| +.+
T Consensus 197 ~av~~~r~~~~~~k-IeVEv~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI-~~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVP-VEVEVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNV-TLE 264 (296)
T ss_pred HHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCC-CHH
Confidence 45777776654 34 444678999999999999999988762 335666666666567899999999 567
Q ss_pred HHHHHHHcCCCEEEEccccccCc
Q 020636 294 DVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.+.+...+|+|.+.+|......+
T Consensus 265 ni~~yA~tGVD~Is~galthsa~ 287 (296)
T PRK09016 265 TLREFAETGVDFISVGALTKHVQ 287 (296)
T ss_pred HHHHHHhcCCCEEEeCccccCCC
Confidence 78888889999999998665443
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.009 Score=52.98 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=105.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhh----c
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG----Q 207 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 207 (323)
..+.+....+++.+-+.|+++|-||+.+|....--+.++..+ | ... .+ .|.+- +...+.+.... -
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~--p-~~l----IG--AGTVL--~~~q~~~a~~aGa~fi 89 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEF--P-EAL----IG--AGTVL--NPEQARQAIAAGAQFI 89 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhC--c-ccE----Ec--ccccc--CHHHHHHHHHcCCCEE
Confidence 467888888888888999999999999998766666666655 2 111 11 01000 00111111110 1
Q ss_pred cCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 208 IDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 208 ~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
..|.++-+.++...+ .++|+ +=|+.|+-++..+.++|++.+.+.-... -+++ ..++.+.- ...+++++..|
T Consensus 90 VsP~~~~ev~~~a~~-~~ip~-~PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~---~~~ka~~g-P~~~v~~~pTG 160 (211)
T COG0800 90 VSPGLNPEVAKAANR-YGIPY-IPGVATPTEIMAALELGASALKFFPAEV---VGGP---AMLKALAG-PFPQVRFCPTG 160 (211)
T ss_pred ECCCCCHHHHHHHHh-CCCcc-cCCCCCHHHHHHHHHcChhheeecCccc---cCcH---HHHHHHcC-CCCCCeEeecC
Confidence 246677777776554 46665 4578999999999999999999853211 0112 22322221 12368999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 288 GVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
||..- .+...+++|+.+|++|+-|..
T Consensus 161 GVs~~-N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 161 GVSLD-NAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred CCCHH-HHHHHHhCCceEEecCccccC
Confidence 99764 899999999999999987753
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0028 Score=59.70 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.+.+++..+.+.|+|+|.++--..+. .+..+..++.+.++++.. ++||+|-||| +.+++..++++||++|.+-
T Consensus 232 S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i 308 (312)
T PRK08999 232 SCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGI 308 (312)
T ss_pred ecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEE
Confidence 4578899999999999999986533221 122233467888887776 8999999999 9999999999999999988
Q ss_pred ccc
Q 020636 310 IMP 312 (323)
Q Consensus 310 ~~~ 312 (323)
+.|
T Consensus 309 ~~~ 311 (312)
T PRK08999 309 RGL 311 (312)
T ss_pred EEe
Confidence 765
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.002 Score=58.15 Aligned_cols=80 Identities=26% Similarity=0.352 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCEEEEcC-CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.|+...+.||..+-+-- -|. ..+.+-..+.+.+|.+.+ ++||=.-|||||-+++.+.|.+|++.|.+||..+.
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~ 109 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVK 109 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceec
Confidence 4668888889999886531 111 224456789999999988 89999999999999999999999999999999988
Q ss_pred Ccchh
Q 020636 315 CPLTE 319 (323)
Q Consensus 315 ~~~~~ 319 (323)
+|.+-
T Consensus 110 ~p~~v 114 (241)
T COG0106 110 NPDLV 114 (241)
T ss_pred CHHHH
Confidence 88653
|
|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0057 Score=57.12 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=67.2
Q ss_pred HHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+|+... .+ +.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.+++++.+-++||| |.+.
T Consensus 195 av~~~r~~~~~~k-IeVEvetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGI-t~~n 262 (294)
T PRK06978 195 ALDAAFALNAGVP-VQIEVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGV-NFDT 262 (294)
T ss_pred HHHHHHHhCCCCc-EEEEcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCC-CHHH
Confidence 4666666543 23 333568999999999999999998773 345556666655557889999999 5677
Q ss_pred HHHHHHcCCCEEEEccccccCcc
Q 020636 295 VFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+.+....|+|.+.+|......|+
T Consensus 263 i~~yA~tGVD~IS~galthsa~~ 285 (294)
T PRK06978 263 VRAFAETGVDRISIGALTKDVRA 285 (294)
T ss_pred HHHHHhcCCCEEEeCccccCCcc
Confidence 88888899999999987655543
|
|
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.006 Score=56.73 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=68.8
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+ ..-|.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.++++..+.++||| +.+
T Consensus 181 ~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI-~~~ 249 (281)
T PRK06543 181 EALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNV-NLN 249 (281)
T ss_pred HHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCC-CHH
Confidence 45777777764 122333678999999999999999988772 345566666666667789999999 567
Q ss_pred HHHHHHHcCCCEEEEccccccCc
Q 020636 294 DVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.+.+....|+|.+.+|......+
T Consensus 250 ni~~yA~tGVD~Is~galths~~ 272 (281)
T PRK06543 250 TVGAIASTGVDVISVGALTHSVR 272 (281)
T ss_pred HHHHHHhcCCCEEEeCccccCCc
Confidence 88888889999999998665443
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.02 Score=50.43 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=67.8
Q ss_pred CHHHHHHHHHhcCCCEE--Eec---------cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCC
Q 020636 213 SWKDVKWLQTITKLPIL--VKG---------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGR 280 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~--vK~---------i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~ 280 (323)
..++|+.+++.+++|++ +|- ..+.+|+..+.++|++.|.+...-....++ ++ +++.+ .+ .
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~---~~~~~i~~----~k-~ 125 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG---DLEELIAR----IK-Y 125 (229)
T ss_pred chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc---hHHHHHHH----hh-c
Confidence 35688889999999984 551 257899999999999999886544332222 33 33333 11 2
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 281 IPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 281 ~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
-..++.-.++|.+|.+-|..+|+|.| |+-|.|.-.+
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~I--GTTLsGYT~~ 161 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDII--GTTLSGYTGY 161 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEE--ecccccccCC
Confidence 34566677999999999999999987 7777665443
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=66.17 Aligned_cols=79 Identities=16% Similarity=0.066 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCC--CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-----------HHHHHHHHcC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALG 302 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-----------~di~kal~lG 302 (323)
.+.|+...+.|||.|.+-.-.+. ......+.++++.++.+.+ .+|+-+-||||+- +++.+.|.+|
T Consensus 270 ve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G 347 (538)
T PLN02617 270 VELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG 347 (538)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcC
Confidence 35588889999999987553331 1122345688999999888 8999999999998 5589999999
Q ss_pred CCEEEEccccccCc
Q 020636 303 ASGIFVSIMPCQCP 316 (323)
Q Consensus 303 Ad~V~iG~~~~~~~ 316 (323)
||-|.||+..+.+|
T Consensus 348 adkV~i~s~Av~~~ 361 (538)
T PLN02617 348 ADKISIGSDAVYAA 361 (538)
T ss_pred CCEEEEChHHHhCh
Confidence 99999999888875
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.004 Score=62.75 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=70.6
Q ss_pred HHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 218 KWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 218 ~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
...|+..+-..++. .+.+.+++..+.+.|+|+|.++--..+. .+..+..++.+.++.+.. ++||++-|||. .++
T Consensus 381 ~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~ 457 (502)
T PLN02898 381 RLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASN 457 (502)
T ss_pred HHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHH
Confidence 44555543223343 4578999999999999999875322211 122233577788877665 79999999995 899
Q ss_pred HHHHHHcCCC---EEEEccccccCcch
Q 020636 295 VFKALALGAS---GIFVSIMPCQCPLT 318 (323)
Q Consensus 295 i~kal~lGAd---~V~iG~~~~~~~~~ 318 (323)
+.+++++||+ +|.+++.++..++-
T Consensus 458 ~~~~~~~G~~~~~gvav~~~i~~~~d~ 484 (502)
T PLN02898 458 AASVMESGAPNLKGVAVVSALFDQEDV 484 (502)
T ss_pred HHHHHHcCCCcCceEEEEeHHhcCCCH
Confidence 9999999999 99999999765543
|
|
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.054 Score=48.68 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHcCCceeecCCCC------C----CHHHHHhcCC--CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 89 GEYATARAASAAGTIMTLSSWST------S----SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~s~------~----~~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
+++.-.+.+.+.|..-.++|.-+ . .+.++++..+ ++..+|+. ..|.+.+.+..++..+.+ ..++|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~-~~d~e~mi~ea~~l~~~~-~ni~IK 85 (220)
T PRK12653 8 SDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVM-ATTAEGMVNDARKLRSII-ADIVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEe-cCCHHHHHHHHHHHHHhC-CCEEEE
Confidence 35566677777777777776421 1 2344555443 46777886 456655544444444443 224433
Q ss_pred cCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~ 236 (323)
+ |.. .. -.+.++.+++. ++++.+-.+.+.
T Consensus 86 I--P~T----------------------------------~~--------------Gl~A~~~L~~~-GI~vn~T~vfs~ 114 (220)
T PRK12653 86 V--PVT----------------------------------AE--------------GLAAIKMLKAE-GIPTLGTAVYGA 114 (220)
T ss_pred e--CCC----------------------------------HH--------------HHHHHHHHHHc-CCCeeEEEecCH
Confidence 2 210 00 02344555443 788888899999
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+.|..+..+||++|.. +-||--+.+...+..+.++.+.+ ..+..|++ ..+|+..++.+++.+|||.+-+.-
T Consensus 115 ~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12653 115 AQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPL 188 (220)
T ss_pred HHHHHHHhcCCcEEEe--ecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCH
Confidence 9999999999998865 33443333444555666655544 22455555 559999999999999999998874
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.004 Score=56.45 Aligned_cols=107 Identities=23% Similarity=0.371 Sum_probs=70.8
Q ss_pred CceeEEeeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc
Q 020636 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (323)
Q Consensus 123 ~~~~~QLy~~~d~~----~~~~~~~~a~~~---G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
+..|+.|-+-.|+. ...+.+++++.. |+..+-++.|.|+..+|..++.-.+-+| .+.. -+
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmP------------lg~p-IG 156 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMP------------LGAP-IG 156 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC------------CCcC-CC
Confidence 34688875544332 234566777766 9988877888888777766663222111 0100 00
Q ss_pred cchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+ .+-.+++.++.+++..++||++- |+.+++|+..+++.|+|+|.+.
T Consensus 157 sg-----------~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 157 SG-----------LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred CC-----------CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 01 12224677899988888999888 6799999999999999999884
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0072 Score=56.45 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=65.0
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH---hcCCCeEEEecCCC
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVR 290 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~~pvia~GGI~ 290 (323)
+.++++|+..+ .| +.-.+.+.+++..+.++|+|.|.+.|. +.+.++++.+. ...++.+.++|||
T Consensus 188 ~ai~~~r~~~~~~k-IeVEv~tl~ea~eal~~gaDiI~LDnm----------~~e~vk~av~~~~~~~~~v~ieaSGGI- 255 (289)
T PRK07896 188 AALRAVRAAAPDLP-CEVEVDSLEQLDEVLAEGAELVLLDNF----------PVWQTQEAVQRRDARAPTVLLESSGGL- 255 (289)
T ss_pred HHHHHHHHhCCCCC-EEEEcCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHHhccCCCEEEEEECCC-
Confidence 45777777654 34 344578999999999999999988762 23334444333 2447889999999
Q ss_pred CHHHHHHHHHcCCCEEEEcccccc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.+.+.+...+|+|.+.+|.....
T Consensus 256 ~~~ni~~yA~tGvD~Is~galt~s 279 (289)
T PRK07896 256 TLDTAAAYAETGVDYLAVGALTHS 279 (289)
T ss_pred CHHHHHHHHhcCCCEEEeChhhcC
Confidence 567888888899999999987763
|
|
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.063 Score=48.25 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~ 292 (323)
.++.+++. ++++-+-.+.+.+.|..+..+|+++|.. +-||--+.+...+..+.++.+.+ +.+..|++ ..+|+.
T Consensus 95 Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILa-AS~r~~ 170 (220)
T PRK12655 95 AIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAP--YVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLA-ASFKTP 170 (220)
T ss_pred HHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEe--ecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEE-EecCCH
Confidence 45555443 7888888899999999999999997765 33443333444566666665544 22455555 559999
Q ss_pred HHHHHHHHcCCCEEEEcc
Q 020636 293 TDVFKALALGASGIFVSI 310 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~ 310 (323)
.++.+++.+|||.+-+.-
T Consensus 171 ~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12655 171 RQALDCLLAGCQSITLPL 188 (220)
T ss_pred HHHHHHHHcCCCEEECCH
Confidence 999999999999998874
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.049 Score=49.24 Aligned_cols=107 Identities=21% Similarity=0.152 Sum_probs=65.7
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcCC----------------CC---------CC-----
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH----------------GA---------RQ----- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~~----------------gg---------~~----- 259 (323)
+..+.++++|+.++.|+-+.. +.+++. +....++|+|.|.++-- |- +.
T Consensus 46 fg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~ 125 (229)
T PRK09722 46 LSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIK 125 (229)
T ss_pred cCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 345577778777777776663 344544 56677788888777321 00 00
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc-ccc-
Q 020636 260 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVSIM-PCQ- 314 (323)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~-~~~- 314 (323)
.| ++ +..++-+.++++... -++.|-+||||. .+-+.++.++|||.+.+|+. +++
T Consensus 126 ~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~ 204 (229)
T PRK09722 126 YYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL 204 (229)
T ss_pred HHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC
Confidence 01 11 233444555544332 146799999998 56777888999999999964 665
Q ss_pred Ccchh
Q 020636 315 CPLTE 319 (323)
Q Consensus 315 ~~~~~ 319 (323)
.++.+
T Consensus 205 ~~d~~ 209 (229)
T PRK09722 205 DEDID 209 (229)
T ss_pred CCCHH
Confidence 34443
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.011 Score=56.02 Aligned_cols=90 Identities=19% Similarity=0.395 Sum_probs=71.5
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
+.+....+..+.|.+.+.++++.++++|++.+.|+ | |.++.+..
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVH------G-Rtr~~kg~----------------------------- 184 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVH------G-RTREQKGL----------------------------- 184 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEe------c-ccHHhcCC-----------------------------
Confidence 45677778778899999999999999999988765 3 33443321
Q ss_pred HHHhhccCCccCHHHHHHHHHhcC-CCEEEec-cCCHHHHHHHHH-cCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~~-~pv~vK~-i~~~e~a~~~~~-~Gad~i~vs 253 (323)
..+..+|+.|+.+++..+ +|+++-| |.+.+|+.++.+ .|+|+|.+.
T Consensus 185 ------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 185 ------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred ------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 124468999999999997 9999885 799999999998 999999763
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0066 Score=59.50 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=65.8
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCC---CCCCcchHHHHHHHHHHhc-------CCCeEEEecCCCCHHHHHHHHHcC
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQ-------GRIPVFLDGGVRRGTDVFKALALG 302 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~---~~~~~~~~~~l~~i~~~~~-------~~~pvia~GGI~~~~di~kal~lG 302 (323)
+.+.+++.++.+.|+|+|.++---.+. ....+-.++.|.++.+.+. ..+||++-||| +.+++.++++.|
T Consensus 307 tHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aG 385 (437)
T PRK12290 307 THGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCG 385 (437)
T ss_pred cCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcC
Confidence 467899999999999999885422221 1223345677776665542 26999999999 889999999999
Q ss_pred CCEEEEccccccCcchhh
Q 020636 303 ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 303 Ad~V~iG~~~~~~~~~~~ 320 (323)
|++|.+=|+++..++.++
T Consensus 386 a~GVAVVSAI~~A~DP~a 403 (437)
T PRK12290 386 VSSLAVVRAITLAEDPQL 403 (437)
T ss_pred CCEEEEehHhhcCCCHHH
Confidence 999999999987766543
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.018 Score=54.16 Aligned_cols=93 Identities=25% Similarity=0.228 Sum_probs=62.1
Q ss_pred HHhcCCCEEEe----c--c---CCH----HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 221 QTITKLPILVK----G--V---LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 221 ~~~~~~pv~vK----~--i---~~~----e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.+.|++|+++- | + ..+ .-++.+.+.|||.|.+--.+- . .....+.+.++.+.+ +++||+.+|
T Consensus 163 a~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~-~---~~g~~e~f~~vv~~~-g~vpVviaG 237 (304)
T PRK06852 163 AHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKK-E---GANPAELFKEAVLAA-GRTKVVCAG 237 (304)
T ss_pred HHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCc-C---CCCCHHHHHHHHHhC-CCCcEEEeC
Confidence 45578998862 2 1 111 226888999999999843210 0 012346677777765 369999999
Q ss_pred CCCCH-HHHH----HHHH-cCCCEEEEccccccCcch
Q 020636 288 GVRRG-TDVF----KALA-LGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 288 GI~~~-~di~----kal~-lGAd~V~iG~~~~~~~~~ 318 (323)
|=+.. .|++ .++. .||.+|.+||=.+.+|+-
T Consensus 238 G~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p 274 (304)
T PRK06852 238 GSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLD 274 (304)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCc
Confidence 99853 3444 4566 899999999988777654
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=52.43 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=62.0
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcC---------------CCC---------CC------
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSN---------------HGA---------RQ------ 259 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~---------------~gg---------~~------ 259 (323)
+..+.++++++.++.|+=+.. +.+++. .+.+.++|+|.|.++- +|. +.
T Consensus 44 ~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~ 123 (201)
T PF00834_consen 44 FGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEP 123 (201)
T ss_dssp B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTT
T ss_pred CCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHH
Confidence 345677778777777777764 334433 5666777888777631 010 10
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 260 ----LD-----------YV----PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 260 ----~~-----------~~----~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.| ++ +..++-++++++.. +.++.|.+||||+.. .+.++.++|||.+.+||.+++.
T Consensus 124 ~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 124 YLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp TGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHHHTS
T ss_pred HhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHhCC
Confidence 01 12 23444455554433 236899999999875 6777888999999999987654
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=53.73 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.+.++.+|+.++.|+++. |+.+.++++.+.+.|||+++|..
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 345889999889999998 78999999999999999999943
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.033 Score=50.33 Aligned_cols=101 Identities=8% Similarity=-0.037 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCC----EEEeccCCHHHHHHHHHcCCCEEEE-c---CCCCCCCCCCcchHHHHHHHHHHhc---CCCeEE
Q 020636 216 DVKWLQTITKLP----ILVKGVLTAEDARIAVQAGAAGIIV-S---NHGARQLDYVPATIMALEEVVKATQ---GRIPVF 284 (323)
Q Consensus 216 ~i~~i~~~~~~p----v~vK~i~~~e~a~~~~~~Gad~i~v-s---~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvi 284 (323)
.+++||+. +.+ +.++--...+..+..++ -+|.|.+ + +.||.. .-+..++-+.++++... -++.|-
T Consensus 108 ~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiMtV~PGfgGQ~--f~~~~l~KI~~lr~~~~~~~~~~~Ie 183 (228)
T PRK08091 108 TIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLD-QIDLIQILTLDPRTGTKA--PSDLILDRVIQVENRLGNRRVEKLIS 183 (228)
T ss_pred HHHHHHHC-CCCceEEEEECCCCCHHHHHHHHh-hcCEEEEEEECCCCCCcc--ccHHHHHHHHHHHHHHHhcCCCceEE
Confidence 56667664 321 22222245566666555 3777765 2 222311 22344555555554432 146799
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+||||. .+-+.++.++|||.+.+|+.+++.+++++.
T Consensus 184 VDGGI~-~~ti~~l~~aGaD~~V~GSalF~~~d~~~~ 219 (228)
T PRK08091 184 IDGSMT-LELASYLKQHQIDWVVSGSALFSQGELKTT 219 (228)
T ss_pred EECCCC-HHHHHHHHHCCCCEEEEChhhhCCCCHHHH
Confidence 999998 567778889999999999999887776543
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0092 Score=52.27 Aligned_cols=82 Identities=27% Similarity=0.308 Sum_probs=60.4
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
..+.++.+++.++ ..+....+.+.+.+..+.++|+|+|...+ ...+.+ +..+.. .++++. |+.|
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~----------~~~~~~-~~~~~~--~~~~i~--gv~t 106 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG----------LDPEVV-KAANRA--GIPLLP--GVAT 106 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC----------CCHHHH-HHHHHc--CCcEEC--CcCC
Confidence 3457888988875 55555567889999999999999995421 122333 333333 567776 8899
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 020636 292 GTDVFKALALGASGIFVS 309 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG 309 (323)
.+++.+|+.+|||.+.+-
T Consensus 107 ~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 107 PTEIMQALELGADIVKLF 124 (190)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999983
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.014 Score=55.53 Aligned_cols=83 Identities=23% Similarity=0.240 Sum_probs=56.6
Q ss_pred HHHHHHcCCCEEEEcCCCC----------CCC------CCCcchHHHHHHHHHHh-cCCCeEEEecCCCCH-HH----HH
Q 020636 239 ARIAVQAGAAGIIVSNHGA----------RQL------DYVPATIMALEEVVKAT-QGRIPVFLDGGVRRG-TD----VF 296 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg----------~~~------~~~~~~~~~l~~i~~~~-~~~~pvia~GGI~~~-~d----i~ 296 (323)
++.+.+.|||.|.+--.+. ... .......+.++.+.+.+ .+++||+.+||=+.. .| +.
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 6888999999999853221 000 01123445666667665 457999999999953 33 34
Q ss_pred HH---HHcCCCEEEEccccccCcchhhh
Q 020636 297 KA---LALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 297 ka---l~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
.+ +..||.++.+||=.+..|+-+-+
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIfQ~~~~ea~ 330 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAFQRPMAEGV 330 (348)
T ss_pred HHHHhhhcCCcchhhchhhhcCCcHHHH
Confidence 56 77899999999988887765543
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.012 Score=56.12 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.++.+.++|+|.|+++.+.|.. ....+.++++++..+ ++||++ |.+.+.+++.+++.+|||+|.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 455888899999999986533321 234567777877654 588888 99999999999999999999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.11 Score=48.41 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHc-CCCEEEEcC---CCCCCCCC-CcchHHHHHHHHHHhcCCCeEEEecCCCCHH-HHHHHHHcCCCEEE
Q 020636 234 LTAEDARIAVQA-GAAGIIVSN---HGARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIF 307 (323)
Q Consensus 234 ~~~e~a~~~~~~-Gad~i~vs~---~gg~~~~~-~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~-di~kal~lGAd~V~ 307 (323)
.++++|+...+. |+|.+.++- ||-..... ..-.++.|.+|.+.+ ++|+++=||...+. ++.|++.+|..-|=
T Consensus 149 t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 149 TDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKIN 226 (283)
T ss_pred CCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEE
Confidence 478999988875 999999864 33221111 112588999999888 89999999997665 55678899999999
Q ss_pred Ecccc
Q 020636 308 VSIMP 312 (323)
Q Consensus 308 iG~~~ 312 (323)
++|-+
T Consensus 227 i~T~l 231 (283)
T PRK08185 227 ISSDM 231 (283)
T ss_pred eChHH
Confidence 98865
|
|
| >PRK12376 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.16 Score=46.18 Aligned_cols=170 Identities=16% Similarity=0.180 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHcCCceeecCCC-------CCCHH----HHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 89 GEYATARAASAAGTIMTLSSWS-------TSSVE----EVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~s-------~~~~e----ei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
+++.-.+.+.+.|..-.++|.- ....+ ++++..+ ++..+|+. ..|.+.+.+..++..+.+ ..++|.
T Consensus 13 Ad~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~mv~eA~~l~~~~-~nv~VK 90 (236)
T PRK12376 13 ADLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVF-ADDLETMEKEAEKIASLG-ENVYVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHHHHHhC-CCeEEE
Confidence 3556777777888777777641 11333 3444444 46888885 456655544445544444 234443
Q ss_pred cCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~ 236 (323)
+ |.. ...| ..-.+.++.+.+. ++++-+-.+.++
T Consensus 91 I--P~T-------------------------------~~~G-------------~~gl~Ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T PRK12376 91 I--PIT-------------------------------NTKG-------------ESTIPLIKKLSAD-GVKLNVTAIFTI 123 (236)
T ss_pred E--CCc-------------------------------Cccc-------------hhHHHHHHHHHHC-CCeEEEeeecCH
Confidence 3 220 0000 0013345666554 788888889999
Q ss_pred HHHHHHHHc----CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc--CCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 237 EDARIAVQA----GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 237 e~a~~~~~~----Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
..+..+.++ |+++|.. +-||-.|.+......+.++.+.+. .+..|++.+ ||+..++.+++.+|||.|-+.-
T Consensus 124 ~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR~~~~v~~a~~~Gad~vTvp~ 200 (236)
T PRK12376 124 EQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PREVYNIIQADQLGCDIITVTP 200 (236)
T ss_pred HHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHcCCCEEEcCH
Confidence 998755555 5887765 445544555556666666665552 256677755 9999999999999999998874
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.027 Score=49.86 Aligned_cols=125 Identities=20% Similarity=0.313 Sum_probs=75.4
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
|...+.+.+.+.++.++++|++++++.+=.+ |
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~------------------------------------------------d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE------------------------------------------------D 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC------------------------------------------------C
Confidence 5555566777778888999999998653111 2
Q ss_pred CccCHHHHHHHHHhc-CCCEEEec----cCCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKG----VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~----i~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..++.+.++.+.+.. +.|+.+.- +.+++. .+.+.++|++.|-.|+.-.. ....++.|+++.+..++++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~----a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT----ALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS----TTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC----HHHHHHHHHHHHHHcCCCcEE
Confidence 234555666666554 67777773 344554 46677999999988753322 233467777777776678999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEE
Q 020636 284 FLDGGVRRGTDVFKALA-LGASGIF 307 (323)
Q Consensus 284 ia~GGI~~~~di~kal~-lGAd~V~ 307 (323)
++-|||+. ..+.+.++ .|+..+=
T Consensus 174 m~GgGv~~-~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 174 MPGGGVRA-ENVPELVEETGVREIH 197 (201)
T ss_dssp EEESS--T-TTHHHHHHHHT-SEEE
T ss_pred EecCCCCH-HHHHHHHHhhCCeEEe
Confidence 99999976 44555555 7877653
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0089 Score=53.49 Aligned_cols=81 Identities=26% Similarity=0.228 Sum_probs=59.4
Q ss_pred CHHHHHHHHHhcC----CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 213 SWKDVKWLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 213 ~~~~i~~i~~~~~----~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
..+.|+.+++.++ +.|-+..+++.++++.+.++|++.|+--+ ...+++.... .. ++|++- |
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~----------~~~~v~~~~~-~~--~i~~iP--G 115 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS----------FNRETAKICN-LY--QIPYLP--G 115 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCCEEC--C
Confidence 3567899988873 33444467999999999999999996311 1223343332 22 566665 8
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 020636 289 VRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~i 308 (323)
+.|+.++.+++.+|||.|.+
T Consensus 116 ~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.015 Score=53.30 Aligned_cols=93 Identities=25% Similarity=0.288 Sum_probs=64.0
Q ss_pred HHHHHhcCCCEEEe------cc-----CCHH----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCe
Q 020636 218 KWLQTITKLPILVK------GV-----LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (323)
Q Consensus 218 ~~i~~~~~~pv~vK------~i-----~~~e----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~p 282 (323)
..-...++.|+++- .+ .+++ -++.+.+.|||.|.+.-.| ..+...++.+.+ .+|
T Consensus 136 ~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vp 204 (265)
T COG1830 136 VEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVP 204 (265)
T ss_pred HHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCC
Confidence 33344578888773 12 2222 2568889999999874321 236677778877 599
Q ss_pred EEEecCCCC-HH-HH----HHHHHcCCCEEEEccccccCcchhhh
Q 020636 283 VFLDGGVRR-GT-DV----FKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 283 via~GGI~~-~~-di----~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
|+.+||=++ .+ ++ ..++..||.++.+||=++..++-+.+
T Consensus 205 VviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m 249 (265)
T COG1830 205 VVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAM 249 (265)
T ss_pred EEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHH
Confidence 999999998 32 22 34566899999999988887765554
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.073 Score=47.58 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCEE---Eec-----c---CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCe
Q 020636 214 WKDVKWLQTITKLPIL---VKG-----V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~---vK~-----i---~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~p 282 (323)
.+.++++++.+++|++ .|. + .+.++++.+.++|+|.|++...-....+ +....+++..+.+. ..++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~-~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPD-GETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCC-CCCHHHHHHHHHhC--CCCe
Confidence 4467778887888886 222 1 2467899999999998877532111000 01223455555443 2677
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 283 VFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 283 via~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++. ++.+.+++.++..+|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 775 5789999999999999999874
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.074 Score=50.83 Aligned_cols=96 Identities=27% Similarity=0.437 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCCCEEEecc-C-CHHH----HHHHHHcCCCEEEEcCCCCCCCCC-Cc--chHHHHHHHHHHhcCCCeEE
Q 020636 214 WKDVKWLQTITKLPILVKGV-L-TAED----ARIAVQAGAAGIIVSNHGARQLDY-VP--ATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i-~-~~e~----a~~~~~~Gad~i~vs~~gg~~~~~-~~--~~~~~l~~i~~~~~~~~pvi 284 (323)
...++++.+ ++.||++|-- . +.++ ++.+...|-+-+++.-.|.+.... .. ..+..++.+++.. ..|||
T Consensus 190 ~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 344555543 5889999943 3 6776 345557888878776655544422 22 2455677777655 68999
Q ss_pred EecCCCCH------HHHHHHHHcCCCEEEEcccc
Q 020636 285 LDGGVRRG------TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 285 a~GGI~~~------~di~kal~lGAd~V~iG~~~ 312 (323)
++-.=.+| .-...|+++|||+++|-..+
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~ 300 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHP 300 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecC
Confidence 97544444 45577889999999998765
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.045 Score=50.21 Aligned_cols=197 Identities=16% Similarity=0.189 Sum_probs=96.0
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCC---------CC----C-----------HHHHHhcCC-Ccee
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---------TS----S-----------VEEVASTGP-GIRF 126 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s---------~~----~-----------~eei~~~~~-~~~~ 126 (323)
.||+-+..|. + -.|+.+.+.|+.+++--.| |. + -+||....+ .|.+
T Consensus 15 ~pIig~gaGt-G--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAGT-G--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEESS-H--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeecc-c--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 5777766433 3 4899999999988765311 10 0 133333333 5677
Q ss_pred EEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhh
Q 020636 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (323)
Q Consensus 127 ~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
+-+.....-..+...++++++.||.++. | -|..|.-.-..|+.+. ..++
T Consensus 86 aGv~atDP~~~~~~fl~~lk~~Gf~GV~-N--fPTvgliDG~fR~~LE----------------------e~Gm------ 134 (268)
T PF09370_consen 86 AGVCATDPFRDMDRFLDELKELGFSGVQ-N--FPTVGLIDGQFRQNLE----------------------ETGM------ 134 (268)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHH----------------------HTT-------
T ss_pred EEecCcCCCCcHHHHHHHHHHhCCceEE-E--CCcceeeccHHHHHHH----------------------hcCC------
Confidence 7776533335667788999999998874 3 3544321111111000 0000
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC---CCCCC-CCCCcc---hHHHHHHHHHHh--
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN---HGARQ-LDYVPA---TIMALEEVVKAT-- 277 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~---~gg~~-~~~~~~---~~~~l~~i~~~~-- 277 (323)
--+...+.|+..++. + -+.+.-+.++++|+...++|+|.|+++- .||.- .....+ ..+.+.++.+++
T Consensus 135 --gy~~EVemi~~A~~~-g-l~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~ 210 (268)
T PF09370_consen 135 --GYDREVEMIRKAHEK-G-LFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARA 210 (268)
T ss_dssp ---HHHHHHHHHHHHHT-T--EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHHC-C-CeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHH
Confidence 001123334444432 3 2455557899999999999999999853 12221 111221 123344444433
Q ss_pred -cCCCeEEE-ecCCCCHHHHHHHHH--cCCCEEEEcccc
Q 020636 278 -QGRIPVFL-DGGVRRGTDVFKALA--LGASGIFVSIMP 312 (323)
Q Consensus 278 -~~~~pvia-~GGI~~~~di~kal~--lGAd~V~iG~~~ 312 (323)
+.++-++. -|-|.+++|+...+. -|+++..=|+.+
T Consensus 211 v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 211 VNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp C-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred hCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 33444444 456999999999998 368888877765
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0062 Score=54.27 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=68.1
Q ss_pred cCHHHHHHHHHhcCCCEEEecc---CCHHH-HHHHHHcCCCEEEEcCCCCCC-C--------------------C-----
Q 020636 212 LSWKDVKWLQTITKLPILVKGV---LTAED-ARIAVQAGAAGIIVSNHGARQ-L--------------------D----- 261 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i---~~~e~-a~~~~~~Gad~i~vs~~gg~~-~--------------------~----- 261 (323)
+..+.++++|+...+++=+|.- .+.+. ++.+.++|||.+.++...|.. + .
T Consensus 42 ~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~ 121 (215)
T PRK13813 42 SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGAL 121 (215)
T ss_pred hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCC
Confidence 3467888898876555557753 23443 377889999999986533210 0 0
Q ss_pred --------------------C---CcchHHHHHHHHHHhcCCCeEEEecCCCCHH-HHHHHHHcCCCEEEEccccccCcc
Q 020636 262 --------------------Y---VPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 262 --------------------~---~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~-di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+ ....++-+.++++..+.++ .+++|||+... ++.+++..|||.+.+||.++..++
T Consensus 122 ~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d 200 (215)
T PRK13813 122 EFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDEL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNAAD 200 (215)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCC
Confidence 0 0011122233333332122 34999999863 677888999999999999988776
Q ss_pred hhhh
Q 020636 318 TEKI 321 (323)
Q Consensus 318 ~~~~ 321 (323)
..+.
T Consensus 201 ~~~~ 204 (215)
T PRK13813 201 PREA 204 (215)
T ss_pred HHHH
Confidence 5543
|
|
| >TIGR02134 transald_staph transaldolase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.32 Score=44.21 Aligned_cols=170 Identities=12% Similarity=0.094 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHcCCceeecCCC------C-CCHHHHHh-----cCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 89 GEYATARAASAAGTIMTLSSWS------T-SSVEEVAS-----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~s------~-~~~eei~~-----~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
.++.-.+.+.+.|..-.++|.- . ...+++.+ ..+++..+|++ ..|.+.+.+..+++.+.+ ..++|.
T Consensus 13 Ad~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~m~~eA~~l~~~~-~nv~VK 90 (236)
T TIGR02134 13 ANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVF-ADDLDEMEKEARYIASWG-NNVNVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEe-cCCHHHHHHHHHHHHhcC-CCeEEE
Confidence 3556777788888777777641 1 12333322 22467889986 456665555555555555 334444
Q ss_pred cCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~ 236 (323)
+ |.. .. ......+.++.+++. ++++-+-.+.+.
T Consensus 91 I--P~T-------------------------~~-------------------~G~~~l~ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T TIGR02134 91 I--PVT-------------------------NT-------------------KGESTGPLIQKLSAD-GITLNVTALTTI 123 (236)
T ss_pred E--CCc-------------------------Cc-------------------ccchHHHHHHHHHHC-CCcEEeehcCCH
Confidence 3 220 00 000124456667665 788888889999
Q ss_pred HHHHHH---HHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc--CCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 237 EDARIA---VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 237 e~a~~~---~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
..+..+ ..+| +++|.. +-||--|.+......+.++.+.+. .+..|++.+ +|+..++.++..+|||.+-+.-
T Consensus 124 ~Qa~~aa~A~~aG~a~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~ 200 (236)
T TIGR02134 124 EQVEKVCQSFTDGVPGIVSV--FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAH 200 (236)
T ss_pred HHHHHHHHHHhCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCH
Confidence 888864 4589 587765 445544555556666666665542 257788766 9999999999999999998873
|
This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.095 Score=46.81 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCEEE---ecc--------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 215 KDVKWLQTITKLPILV---KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~v---K~i--------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
+.++++++..++|++. |+. .+.++++.+.++|+|.|.+.....+. .......+.+.++++.. ++++
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~-p~~~~~~~~i~~~~~~g--~~~i 126 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR-PDGETLAELIKRIHEEY--NCLL 126 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC-CCCcCHHHHHHHHHHHh--CCeE
Confidence 3566677767888863 332 23568999999999987764321110 01112335555555543 5777
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++ ++.|.+++.++..+|+|.+.+.
T Consensus 127 iv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 127 MA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 76 6899999999999999999764
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.033 Score=51.46 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.+.++.+|+.++.|+.+. ||.++|+++.+.+.|||+++|..
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 456888999889999998 67899999999999999999943
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0082 Score=54.02 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH--cCCCEEEEccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFVSIMPC 313 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~--lGAd~V~iG~~~~ 313 (323)
.+-|+...+.|+|.+.+-.--+. .+.+..++.+.++.+. +|+.+.|||||.+|+.+++. .||+.|.+||..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 45678888999999987432221 1345678888888774 48999999999999999865 2699999999998
Q ss_pred cCcch
Q 020636 314 QCPLT 318 (323)
Q Consensus 314 ~~~~~ 318 (323)
.+|.+
T Consensus 113 ~~p~~ 117 (221)
T TIGR00734 113 DITEL 117 (221)
T ss_pred CCHHH
Confidence 88863
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.008 Score=58.68 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.+..+.++|+|.|++....|. .....+.++++++.++ +++|+ .|+|.|.+++..++.+|||+|.+|
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~vi-~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDLI-AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcEE-EEecCCHHHHHHHHHcCCCEEEEC
Confidence 36799999999999997542221 2345577888887764 45544 599999999999999999999887
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=52.94 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=32.6
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~v 252 (323)
+...++.|++..++||+|- |+.++.+|..+.+.|+|+|-+
T Consensus 163 n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 163 NPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp THHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 4567888999999999988 789999999999999999987
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.026 Score=51.14 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHhcC-CCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITK-LPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..|+.|+.+++.++ +||+.- ++.+.+||++.++.|||+|.+.
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 46999999999984 887665 5799999999999999999884
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.016 Score=51.13 Aligned_cols=81 Identities=28% Similarity=0.288 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
..+.|+.++++++ +-|-+..+.+.++++.+.++||+.++--+ -+-+.+..+.+ . ++|++- |+.|
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~-~--~i~~iP--G~~T 110 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYARE-Y--GIPYIP--GVMT 110 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHH-H--TSEEEE--EESS
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCcccC--CcCC
Confidence 3567888888874 33445568999999999999999996521 12344444443 2 566664 7999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
+.++.+|+.+||+.|=+
T Consensus 111 ptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 111 PTEIMQALEAGADIVKL 127 (196)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999865
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.015 Score=52.89 Aligned_cols=41 Identities=22% Similarity=0.506 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEE
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~v 252 (323)
.+...|+.|++..++||++- ||.+++|+..+.+.|+|+|-+
T Consensus 176 ~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 176 QNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred CCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 35667888999889999888 889999999999999999976
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.033 Score=52.38 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=67.3
Q ss_pred HHHHHHHhcC-CC---EEEeccCCHHHHHHHHH------cCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 216 DVKWLQTITK-LP---ILVKGVLTAEDARIAVQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 216 ~i~~i~~~~~-~p---v~vK~i~~~e~a~~~~~------~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
.++.+++..+ .+ -|.-.+.+.++++.+.+ +|+|.|.+.|. ..... ..+.+.+.+..+.++++.++
T Consensus 189 av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~---~~~~e~l~~av~~~~~~~~l 265 (308)
T PLN02716 189 AVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENG---DVDVSMLKEAVELINGRFET 265 (308)
T ss_pred HHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCccccccc---CCCHHHHHHHHHhhCCCceE
Confidence 4666666321 11 12335689999999999 99999999874 21111 12556666766666667899
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
-++|||. .+.+.+....|+|.+.+|....
T Consensus 266 EaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 266 EASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 9999994 6778888889999999998665
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.082 Score=48.26 Aligned_cols=125 Identities=16% Similarity=0.250 Sum_probs=79.1
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
|...+.+.+.+-++.++++|++++++.+=.+ +
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~------------------------------------------------d 98 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDV------------------------------------------------D 98 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 4444556677778888899999998754221 2
Q ss_pred CccCHHHHHHHHHhc-CCCEEEec----cCCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKG----VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~----i~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..++.+.++.+.+.. +.|+.+.- +.++.. .+.+.+.|++.|-.|+...+ ....++.|.++.+...+.+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~----a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQD----AEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCC----HHHHHHHHHHHHHhcCCCE-E
Confidence 224555666666555 57777762 234444 46688999999977653221 2334566777766554434 7
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~i 308 (323)
++-|||+ ...+.+.+..|+..+=.
T Consensus 174 m~GgGV~-~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 174 MAGAGVR-LSNLHKFLDAGVREVHS 197 (248)
T ss_pred EeCCCCC-HHHHHHHHHcCCCEEee
Confidence 7777775 56666666799887754
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.12 Score=48.29 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=58.7
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|.... +.|+|.+-++. ||-.. +..-.++.|.+|.+.+ ++|+..-||=..+ +++.+++.+|+.-|=+
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~--~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLED--IPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCCC--CCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEEE
Confidence 5788887766 69999999864 55332 1222478999999888 8999999988777 6677899999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 229 ~Tel 232 (283)
T PRK07998 229 ASDL 232 (283)
T ss_pred CHHH
Confidence 9865
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.49 Score=43.42 Aligned_cols=94 Identities=26% Similarity=0.414 Sum_probs=64.2
Q ss_pred CHHHHHHHHHhcCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCC---cchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~---~~~~~~l~~i~~~~~~~~pv 283 (323)
+++.++++-+ .+.||++|-- .|.|+ |+..+..|-..|++.-+|=|..+.. .-++..++.+++.. ..||
T Consensus 141 NF~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPV 217 (286)
T COG2876 141 NFALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPV 217 (286)
T ss_pred hhHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCE
Confidence 3455555533 4789999933 56666 7778899999999988886655432 22456777777766 7999
Q ss_pred EEec----CCCCHHH--HHHHHHcCCCEEEEc
Q 020636 284 FLDG----GVRRGTD--VFKALALGASGIFVS 309 (323)
Q Consensus 284 ia~G----GI~~~~d--i~kal~lGAd~V~iG 309 (323)
|+|= |=|+.-. +..|++.|||++|+-
T Consensus 218 ivDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 218 IVDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred EECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 9964 3333322 235677999999984
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.075 Score=51.01 Aligned_cols=96 Identities=22% Similarity=0.450 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCCEEEe-ccC-CHHH----HHHHHHcCCCEEEEcCCCCCCCCC----CcchHHHHHHHHHHhcCCCeE
Q 020636 214 WKDVKWLQTITKLPILVK-GVL-TAED----ARIAVQAGAAGIIVSNHGARQLDY----VPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~-~~e~----a~~~~~~Gad~i~vs~~gg~~~~~----~~~~~~~l~~i~~~~~~~~pv 283 (323)
.+.++++.+ ++.||++| |.. +.++ ++.+.+.|-+-|++.-.|-|.... ...++..++.+++.. .+||
T Consensus 198 ~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPV 274 (352)
T PRK13396 198 FSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPI 274 (352)
T ss_pred HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCE
Confidence 445666654 58899999 444 7777 445556798888887665544421 234577888887765 6899
Q ss_pred EEec----CCCC--HHHHHHHHHcCCCEEEEcccc
Q 020636 284 FLDG----GVRR--GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 284 ia~G----GI~~--~~di~kal~lGAd~V~iG~~~ 312 (323)
|+|- |.++ ..-...|+++|||+++|=..+
T Consensus 275 i~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 275 MIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred EECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 9973 3332 244557788999999997665
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0096 Score=53.10 Aligned_cols=73 Identities=23% Similarity=0.289 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.|+...+.||++|.+..-.+. ....++.+..+++.+ ++||+.-|+|++..++..++++|||+|.++...+.
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~----~~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~ 106 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY----FQGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALD 106 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc----cCCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCC
Confidence 46688999999999987432111 112446677777766 79999999999999999999999999999887654
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.014 Score=58.76 Aligned_cols=251 Identities=19% Similarity=0.261 Sum_probs=137.8
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|... ...+++|++|.+- +..++.||+.|||... +|..||.+.+++|...+++. ..++|+..+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~v------t~~~ma~a~a~~GglGvi~~--~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTV------TEHKMAIAMALMGGIGVIHN--NCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCcccc------ccHHHHHHHHHCCCeEEecC--CCCHHHHHH
Confidence 499999999865 3556889998876 4688999999999664 56789999999999999975 456666543
Q ss_pred cC----C--CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC----CCCC-chHHHHhhccCCCCccccccccccc
Q 020636 120 TG----P--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPFLTLKNFQGLD 188 (323)
Q Consensus 120 ~~----~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~----p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~ 188 (323)
.. . ...............+.+.++..++.++..+.|+-+. -..| ...+|++..- .....+..+...
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diMt~- 167 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVMTP- 167 (495)
T ss_pred HHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhhCC-
Confidence 21 1 1111111111112233455566677788777764321 1112 2334443110 000000000000
Q ss_pred cCCCccc-cchhh---HHHHhhc-------cCC------ccCHHHHHHHHHh------cCCCEEEecc-----CCHHHHH
Q 020636 189 LGKMDEA-NDSGL---AAYVAGQ-------IDR------SLSWKDVKWLQTI------TKLPILVKGV-----LTAEDAR 240 (323)
Q Consensus 189 ~~~~~~~-~~~~~---~~~~~~~-------~~~------~~~~~~i~~i~~~------~~~pv~vK~i-----~~~e~a~ 240 (323)
..+.... ....+ .+.+... .|. -.+.+++...... -...+.|... ...+.++
T Consensus 168 ~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~ 247 (495)
T PTZ00314 168 REKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAA 247 (495)
T ss_pred cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHH
Confidence 0000000 00000 0000000 000 0122222222110 0133444321 1246688
Q ss_pred HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 241 ~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.++|+|.|.+....|+. .-.++.++++++..+ +++|++ |.|.|.+++..++.+|||++-+|
T Consensus 248 ~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 248 ALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 9999999999987533321 224678888888764 678887 99999999999999999999765
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.023 Score=50.40 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=58.0
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
..+.|+.+++.++ +-|-...+++.++++.+.++|++.++--+ ...+++.... .. ++|++ =|+.|
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~----------~~~~vi~~a~-~~--~i~~i--PG~~T 106 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG----------TTQELLAAAN-DS--DVPLL--PGAAT 106 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCCEe--CCCCC
Confidence 3566888888774 33444568999999999999999986321 1233443333 22 44444 58999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
+.++..|+.+||+.|=+
T Consensus 107 ptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 107 PSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999866
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.026 Score=50.23 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCCEEE--eccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 214 WKDVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~v--K~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.+.|+.+++.++.++.+ ..+.+.++++.+.++|+|+++..+ .+.+.+.. .... .++++. |+.|
T Consensus 49 ~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~~~-~~~~--~~~~~~--G~~t 113 (206)
T PRK09140 49 FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVIRR-AVAL--GMVVMP--GVAT 113 (206)
T ss_pred HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHHHH-HHHC--CCcEEc--ccCC
Confidence 45688888887644444 467999999999999999996521 12233322 2222 455554 3999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
.+++.++..+|||.|.+
T Consensus 114 ~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 114 PTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999987
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.051 Score=50.17 Aligned_cols=93 Identities=25% Similarity=0.277 Sum_probs=68.9
Q ss_pred CHH-HHHHHHHhcCC-CEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH--hcCCCeEEEecC
Q 020636 213 SWK-DVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGG 288 (323)
Q Consensus 213 ~~~-~i~~i~~~~~~-pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~~pvia~GG 288 (323)
+|+ .++..|+..+. +.+--.+.+.++++++.++|+|.|.+.|. +.+.+.++.+. .++++-+=++||
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGG 242 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCC
Confidence 354 47888887543 22333579999999999999999999873 23445555555 445678889999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
| +.+.+......|.|.+.+|..-...|
T Consensus 243 I-t~~ni~~yA~tGVD~IS~galths~~ 269 (280)
T COG0157 243 I-TLENIREYAETGVDVISVGALTHSAP 269 (280)
T ss_pred C-CHHHHHHHhhcCCCEEEeCccccCCc
Confidence 8 56778888889999999998765555
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.017 Score=54.58 Aligned_cols=92 Identities=20% Similarity=0.356 Sum_probs=60.8
Q ss_pred HhcCCCceeEEeeecCC--hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc
Q 020636 118 ASTGPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (323)
Q Consensus 118 ~~~~~~~~~~QLy~~~d--~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
.+..+.+..+.+....+ .+.+.+++++++++|+++|.|+--++..
T Consensus 118 ~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q--------------------------------- 164 (309)
T PF01207_consen 118 RKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ--------------------------------- 164 (309)
T ss_dssp HHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---------------------------------
T ss_pred hcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---------------------------------
Confidence 33344566666655555 6778899999999999998887432221
Q ss_pred cchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHc-CCCEEEEc
Q 020636 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 253 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~-Gad~i~vs 253 (323)
......+|+.++++++.+++||+.-| +.+.+|++...+. |+|+|.+.
T Consensus 165 -----------~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 165 -----------RYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp -----------CCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred -----------cCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 01123579999999999999998885 7899999998865 99999883
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.063 Score=49.96 Aligned_cols=155 Identities=25% Similarity=0.246 Sum_probs=88.8
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-------------CC----HHHHHhcCCCceeEEeeecC
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-------------SS----VEEVASTGPGIRFFQLYVYK 133 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~-------------~~----~eei~~~~~~~~~~QLy~~~ 133 (323)
..|++++ +.+. .++.=...++.+.++|+.++-=+++. .. ++++++...-+.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4676665 3332 33333577888888887655211111 01 22233333346788876666
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+.+.+.++++.++++|++++.++-.... +..+... ..+.. . ...+. -++. . .....
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~---~~~~~~~--~~~~~---~----~~~~g-----~sg~--~-----~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISG---RVVDLKT--VGPGP---K----RGTGG-----LSGA--P-----IRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCc---cceeccc--Ccccc---C----CCCCc-----cCcH--H-----HHHHH
Confidence 6667888999999999999987632111 0000000 00000 0 00000 0000 0 01235
Q ss_pred HHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
++.++++++.+ ++||+.- ++.+.+++.+++.+|||.|.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 77899999988 7888765 6789999999999999999874
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.049 Score=48.85 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=36.8
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+...++-|+++.++||+|- |+.++.+|..+.+.|+|+|-+.
T Consensus 169 ~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 169 QNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 35667888999999999998 8899999999999999999763
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.014 Score=58.08 Aligned_cols=251 Identities=19% Similarity=0.248 Sum_probs=136.3
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH---
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE--- 116 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee--- 116 (323)
.||++.|+|... ...+++|++|.+- +.+++.||+-|||... +|..++.+.++.|...++... .++|+
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtv------Te~ema~~ma~~gg~GvI~~n--~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTV------TESRMAIAMAREGGIGVIHRN--MSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCcc------CHHHHHHHHHhcCCCceeecC--CCHHHHHH
Confidence 499999999865 3456889999886 7899999999998653 566788888888877777742 33433
Q ss_pred -HHhcC--CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC----CCCC-chHHHHhhccCCCCccccccccccc
Q 020636 117 -VASTG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPFLTLKNFQGLD 188 (323)
Q Consensus 117 -i~~~~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~----p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~ 188 (323)
+.... .....-++..........+.++.+.+.++..+.|.=+. -..| ...+|+..... ....+..+...
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~--~~~~V~dvm~~- 151 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD--KGKPVSEVMTR- 151 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc--CCCCHHHhhCC-
Confidence 22221 11111111111122334455666677788777664322 1112 12344431100 00000000000
Q ss_pred cCCC--cc-ccchhhHHHHhhcc-------C------CccCHHHHHHHHHh------cCCCEEEecc-----CCHHHHHH
Q 020636 189 LGKM--DE-ANDSGLAAYVAGQI-------D------RSLSWKDVKWLQTI------TKLPILVKGV-----LTAEDARI 241 (323)
Q Consensus 189 ~~~~--~~-~~~~~~~~~~~~~~-------~------~~~~~~~i~~i~~~------~~~pv~vK~i-----~~~e~a~~ 241 (323)
.... .. ..-..+.+.+.... | .-.+.+++-+..+. -+.-++|.+. .+.+.++.
T Consensus 152 ~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~ 231 (450)
T TIGR01302 152 EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEA 231 (450)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHH
Confidence 0000 00 00000000000000 0 01223332222111 1223444432 23577899
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.++|+|.|.+....|+. ...++.++++++.++ ++||++ |+|-|.+++..++.+|||+|-+|
T Consensus 232 L~~aG~d~I~vd~a~g~~----~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 232 LVKAGVDVIVIDSSHGHS----IYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHhCCCEEEEECCCCcH----hHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 999999999986533321 345677888887654 789998 99999999999999999999766
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.11 Score=47.70 Aligned_cols=83 Identities=7% Similarity=0.024 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHcCCCEEEE-c---CCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEE
Q 020636 234 LTAEDARIAVQAGAAGIIV-S---NHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGI 306 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~v-s---~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V 306 (323)
...+..+..++. +|.|.+ + +.||.. .-+..++-+.++++... -++.|-+||||.. +-+.++.++|||.+
T Consensus 143 Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~--Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~ 218 (254)
T PRK14057 143 TPLDVIIPILSD-VEVIQLLAVNPGYGSKM--RSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRV 218 (254)
T ss_pred CCHHHHHHHHHh-CCEEEEEEECCCCCchh--ccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEE
Confidence 455666655553 777654 2 222311 22344555555554432 1477999999975 46778889999999
Q ss_pred EEccccccCcchhh
Q 020636 307 FVSIMPCQCPLTEK 320 (323)
Q Consensus 307 ~iG~~~~~~~~~~~ 320 (323)
..|+.+++.+++++
T Consensus 219 V~GSalF~~~d~~~ 232 (254)
T PRK14057 219 VSGSALFRDDRLVE 232 (254)
T ss_pred EEChHhhCCCCHHH
Confidence 99999988766544
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.019 Score=57.90 Aligned_cols=252 Identities=17% Similarity=0.187 Sum_probs=134.9
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|... ...+++|++|.+- ...++.||+.|||... .|..+|.+.+++|...+++. ..+.|+..+
T Consensus 23 tfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~v------t~~~lA~Ama~aGGiGfI~~--~as~E~q~~ 94 (505)
T PLN02274 23 TYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTV------TESDMAIAMAALGGIGIVHY--NNTAEEQAA 94 (505)
T ss_pred CccceEecccccCcCCcccccccccccccCcCCCEeccCCccc------chHHHHHHHHhCCCeEEEcC--CCCHHHHHH
Confidence 499999999865 3456788887775 3577899999999664 35689999999998777774 334444322
Q ss_pred ----cC--CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC----CCCC-chHHHHhhccCCCCccccccccccc
Q 020636 120 ----TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPFLTLKNFQGLD 188 (323)
Q Consensus 120 ----~~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~----p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~ 188 (323)
.. .....-....-.....+.+.++...+.++..+.|+=+. -..| ...+|++..-. + ...+..+....
T Consensus 95 ~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~-~-~~~V~eIMt~~ 172 (505)
T PLN02274 95 IVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND-R-ETKLSEVMTSD 172 (505)
T ss_pred HHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc-c-CCcHHHHhccC
Confidence 11 10010011111122233455666677888877764221 0112 23344431100 0 00000000000
Q ss_pred cC--CCc-cccchhhHHHHhhc-------cC------CccCHHHHHHHHHhc---------CCCEEEec---c--CCHHH
Q 020636 189 LG--KMD-EANDSGLAAYVAGQ-------ID------RSLSWKDVKWLQTIT---------KLPILVKG---V--LTAED 238 (323)
Q Consensus 189 ~~--~~~-~~~~~~~~~~~~~~-------~~------~~~~~~~i~~i~~~~---------~~pv~vK~---i--~~~e~ 238 (323)
.. ... ........+.+... .| .-++.+++....+.- ...+.|.. + ...|-
T Consensus 173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r 252 (505)
T PLN02274 173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKER 252 (505)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHH
Confidence 00 000 00000000000000 00 012344443333320 12344442 2 23577
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++.+.++|+|.|.+....|+ ....++.++++++..+ +.+||+ |+|.|.+++..++.+|||+|.+|
T Consensus 253 ~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 253 LEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 89999999999999654332 1234678888887663 355554 89999999999999999999775
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.13 Score=48.99 Aligned_cols=187 Identities=17% Similarity=0.145 Sum_probs=101.6
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCcee---ecCCCCC------C--------HHHHHhcCCCceeEEeeecC
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWSTS------S--------VEEVASTGPGIRFFQLYVYK 133 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~---vs~~s~~------~--------~eei~~~~~~~~~~QLy~~~ 133 (323)
..|++++=+ + ..++.-..+++.+.++|+.++ +|..... . ++.+++...-|.++.|-+
T Consensus 99 ~~pvi~si~-g---~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASLN-G---VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEeC-C---CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 568887732 2 134334578888888886444 3211110 1 222333334678888854
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+...+.++++.++++|+++++++=-.+.. .-|++. . .. .+.+.+ .+.. .....
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~---~id~~~-~------~~-----~~~~gl---SG~~---------~~~~a 225 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQP---DIDLET-L------EV-----VPNLLL---SSPA---------EIRLP 225 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCC---Cccccc-c------ce-----ecCCCc---CCcc---------chhHH
Confidence 33346678888999999999875221110 011100 0 00 000000 0000 11234
Q ss_pred HHHHHHHHHhcCCCEE-EeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCCCeEEEecCCCC
Q 020636 214 WKDVKWLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
++.+.++++..++||+ +.|+.+.+||.+.+.+|||.|.+...- +..++..+ +...++.+.+ -.-|+++
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~---~~~gp~~~~~i~~~L~~~l-------~~~g~~~ 295 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSAL---LRHGPDYIGTLLAGLEAWM-------EEHGYES 295 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhh---hhcCchHHHHHHHHHHHHH-------HHcCCCC
Confidence 6778888888889987 557899999999999999999885210 11122222 2333443333 2356778
Q ss_pred HHHHHHHHH
Q 020636 292 GTDVFKALA 300 (323)
Q Consensus 292 ~~di~kal~ 300 (323)
-.|+.-.++
T Consensus 296 i~e~~G~~~ 304 (325)
T cd04739 296 VQQLRGSMS 304 (325)
T ss_pred HHHHhcccc
Confidence 777765433
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.018 Score=54.29 Aligned_cols=162 Identities=23% Similarity=0.315 Sum_probs=99.1
Q ss_pred ceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ec--CCC--------------------------CC
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LS--SWS--------------------------TS 112 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs--~~s--------------------------~~ 112 (323)
..+|.|++|++.+++.-=-+ .++ ..+.++....|.-++ ++ ... -.
T Consensus 74 ~~~i~~~~~~sRl~~Gtg~y---~s~---~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ 147 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGTGKY---KDF---EETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCY 147 (326)
T ss_pred CeEECCEEEecceeEecCCC---CCH---HHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCC
Confidence 47789999999999875222 222 245555555665444 11 110 01
Q ss_pred CHHH------HHhcCCCceeEEeeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCCchHHHHhhccCCCCcc
Q 020636 113 SVEE------VASTGPGIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (323)
Q Consensus 113 ~~ee------i~~~~~~~~~~QLy~~~d~~----~~~~~~~~a~~~---G~~al~itvd~p~~g~r~~d~~~~~~~~~~~ 179 (323)
+-+| +++...+..|+.|-+-.|+. ...+.+++++.. |+..+.++.|.|...+|..++.--.-+|
T Consensus 148 ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmP--- 224 (326)
T PRK11840 148 TAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMP--- 224 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEee---
Confidence 2222 12222245799986644322 234566777776 9999899999998777766652110011
Q ss_pred ccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+ ..++ |.+ .+-.+.+.|+.+++..++||++- |+.+++|+..+.+.|+|++-+.
T Consensus 225 -l-------~~pI--Gsg-----------~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 225 -L-------GAPI--GSG-----------LGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred -c-------cccc--cCC-----------CCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 0 0011 111 11125677888888888999888 8899999999999999999773
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.63 Score=43.43 Aligned_cols=190 Identities=15% Similarity=0.137 Sum_probs=107.0
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee-----cCCCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-----s~~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-.++ |++.+.+.+|.. +..+ .+.+++... .+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 47788887655444555556788888888875543 334455655532 2222 345666642 35667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++++.++++|++++++.. |.... + ..+-..+..
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p--P~~~~--------------------------~-----------------~~~~i~~~~ 119 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT--PYYNK--------------------------P-----------------TQEGLYQHF 119 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC--CcCCC--------------------------C-----------------CHHHHHHHH
Confidence 77888899999999998752 32100 0 000112345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.+++|+++=.+ .+++..+++.+.+ .|+-- .+.. .++..+.++.+..+++..|+. |
T Consensus 120 ~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p--~v~gi------K~s~-~d~~~~~~~~~~~~~~~~v~~-G--- 186 (292)
T PRK03170 120 KAIAEATDLPIILYNVPGRTGVDILPETVARLAEHP--NIVGI------KEAT-GDLERVSELIELVPDDFAVYS-G--- 186 (292)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCC--CEEEE------EECC-CCHHHHHHHHHhCCCCeEEEE-C---
Confidence 5566667788876632 5677777775432 22210 1111 134444455544443444443 3
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
....++..+.+|+++++-|..-+....+.+
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~~P~~~~~ 216 (292)
T PRK03170 187 DDALALPFLALGGVGVISVAANVAPKEMAE 216 (292)
T ss_pred ChHhHHHHHHcCCCEEEEhHHhhhHHHHHH
Confidence 233467778999999998876554444433
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.093 Score=48.28 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.++++|+.++.|+++. |+.++++++.+.++|||++++.
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4667999999888999998 4678999999999999999984
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.025 Score=54.29 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+-+..+.++|+|.|++...-|+ .....+.++++++..+ ++|||+ |.|-|.+-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 57788999999999999643232 1334577888888775 789986 88999999999999999999998
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.25 Score=46.18 Aligned_cols=153 Identities=24% Similarity=0.307 Sum_probs=86.0
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecCCC---C-------CC-------HHHHHhcCCCceeEEeeec
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWS---T-------SS-------VEEVASTGPGIRFFQLYVY 132 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~s---~-------~~-------~eei~~~~~~~~~~QLy~~ 132 (323)
..|++++=++. .++.=...|+.+.++|..++ ++-.+ . .+ ++.+++...-|.++.+-+
T Consensus 89 ~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~- 163 (296)
T cd04740 89 GTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP- 163 (296)
T ss_pred CCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-
Confidence 46777664322 33333578888888887655 32110 0 11 222333334567877743
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
+.+...++++.++++|++++.+. ++-. |. .-+.+... | .+ . ...+ + ++.......
T Consensus 164 -~~~~~~~~a~~~~~~G~d~i~~~-nt~~-g~-~~~~~~~~--~-~~--~----~~~g--------g----~sg~~~~~~ 218 (296)
T cd04740 164 -NVTDIVEIARAAEEAGADGLTLI-NTLK-GM-AIDIETRK--P-IL--G----NVTG--------G----LSGPAIKPI 218 (296)
T ss_pred -CchhHHHHHHHHHHcCCCEEEEE-CCCc-cc-ccccccCc--e-ee--c----CCcc--------e----ecCcccchH
Confidence 44456778888999999988653 2211 10 00111000 0 00 0 0000 0 000011224
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.++.++.+++.+++||+.- ++.+.+++..++++|||.|.+.
T Consensus 219 ~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 6788899999889998765 5789999999999999999874
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.41 Score=44.74 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=56.9
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC-HHHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~-~~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||-.. ....-.++.|.+|.+.+ ++|+..=||=.. -+++.|++.+|..-|=+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~-~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYS-KTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCCC-CCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 4688888776 58999999864 55332 11223678999999988 899998775444 46677899999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 232 ~T~l 235 (286)
T PRK12738 232 ATEL 235 (286)
T ss_pred CcHH
Confidence 9865
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.35 Score=45.16 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=57.7
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++. ||-... ...-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMYKG-EPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788988777 48999999874 554321 1223678999999988 7999987754444 5677899999999999
Q ss_pred ccccc
Q 020636 309 SIMPC 313 (323)
Q Consensus 309 G~~~~ 313 (323)
+|-+.
T Consensus 232 ~T~l~ 236 (284)
T PRK09195 232 ATELK 236 (284)
T ss_pred CcHHH
Confidence 98664
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.058 Score=57.15 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHH----Hc---CCCEEEEcCCCCCC-CCCC--cchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHH
Q 020636 232 GVLTAEDARIAV----QA---GAAGIIVSNHGARQ-LDYV--PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 232 ~i~~~e~a~~~~----~~---Gad~i~vs~~gg~~-~~~~--~~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~ 300 (323)
-+.+.+++..+. .. |+|+|.++--..+. .... +..++.+.++.+.+.. .+||++-||| +.+++.++++
T Consensus 107 S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~ 185 (755)
T PRK09517 107 TIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAA 185 (755)
T ss_pred eCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHH
Confidence 346777776542 23 59999986533222 1122 2356788888877721 2999999999 8899999999
Q ss_pred cCCCEEEEccccccCcchh
Q 020636 301 LGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 301 lGAd~V~iG~~~~~~~~~~ 319 (323)
.||++|.+-+.++..++..
T Consensus 186 ~Ga~giAvisai~~a~d~~ 204 (755)
T PRK09517 186 TGIDGLCVVSAIMAAANPA 204 (755)
T ss_pred cCCCEEEEehHhhCCCCHH
Confidence 9999999999998776644
|
|
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.18 Score=45.22 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=77.6
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
|...+.+.+.+-++.++++|++++++.+-++ |
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~------------------------------------------------d 98 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALTA------------------------------------------------D 98 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeecC------------------------------------------------C
Confidence 4444456778888899999999998653221 2
Q ss_pred CccCHHHHHHHHHhc-CCCEEEec----cCCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKG----VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~----i~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..++.+.++.+.+.. ++++.+.- +.++.+ .+.+.+.|+..|-.|+ |. ....-.++.|.++.+..++++.|
T Consensus 99 g~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsG--g~--~sa~eg~~~l~~li~~a~gri~I 174 (241)
T COG3142 99 GNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSG--GK--ASALEGLDLLKRLIEQAKGRIII 174 (241)
T ss_pred CccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCC--Cc--CchhhhHHHHHHHHHHhcCCEEE
Confidence 234455666666654 56676663 344544 5788899999997754 43 22233455666666666678888
Q ss_pred EEecCCCCHHHHHHHHHcCCC
Q 020636 284 FLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd 304 (323)
++-|||+...=..-....|+.
T Consensus 175 m~GaGV~~~N~~~l~~~tg~~ 195 (241)
T COG3142 175 MAGAGVRAENIAELVLLTGVT 195 (241)
T ss_pred EeCCCCCHHHHHHHHHhcCch
Confidence 888888754433333556754
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.36 Score=45.50 Aligned_cols=128 Identities=14% Similarity=0.176 Sum_probs=86.8
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+++. ..+++.+.+.++++.+.|++++-+.++..
T Consensus 127 ~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~~--------------------------------------------- 160 (316)
T cd03319 127 DYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGGD--------------------------------------------- 160 (316)
T ss_pred EEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCCC---------------------------------------------
Confidence 34553 35677777777777788999988765321
Q ss_pred hccCCccCHHHHHHHHHhcC-CCEEEecc--CCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc
Q 020636 206 GQIDRSLSWKDVKWLQTITK-LPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 278 (323)
Q Consensus 206 ~~~~~~~~~~~i~~i~~~~~-~pv~vK~i--~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 278 (323)
++...+.++.+|+.++ .++.++.- .+.++| +.+.+.+++.|.- . ..+..++.++++.+.+
T Consensus 161 ----~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe-------P-~~~~d~~~~~~L~~~~- 227 (316)
T cd03319 161 ----LEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ-------P-VPAGDDDGLAYLRDKS- 227 (316)
T ss_pred ----hhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC-------C-CCCCCHHHHHHHHhcC-
Confidence 1123556778887764 56666642 445554 4445667777631 1 1134577788888876
Q ss_pred CCCeEEEecCCCCHHHHHHHHHc-CCCEEEEccccc
Q 020636 279 GRIPVFLDGGVRRGTDVFKALAL-GASGIFVSIMPC 313 (323)
Q Consensus 279 ~~~pvia~GGI~~~~di~kal~l-GAd~V~iG~~~~ 313 (323)
++||++++.+.+..|+.+++.. ++|.|++--..+
T Consensus 228 -~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~ 262 (316)
T cd03319 228 -PLPIMADESCFSAADAARLAGGGAYDGINIKLMKT 262 (316)
T ss_pred -CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecccc
Confidence 7999999999999999999996 489998865444
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.7 Score=42.70 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=109.1
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hcCC--CceeEEeeecCChHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~~ 138 (323)
|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ + ++.+.+.+|.. +... -+.+++.-. .+.+..
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHH
Confidence 5677787555445555666888888888875543 2 23345555532 2222 345566532 345567
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
.++.+.++++|++++.+.- |... + + ..+-..+..+
T Consensus 82 i~~a~~a~~~Gad~v~v~p--P~y~------------~--------------~-----------------~~~~~~~~~~ 116 (281)
T cd00408 82 IELARHAEEAGADGVLVVP--PYYN------------K--------------P-----------------SQEGIVAHFK 116 (281)
T ss_pred HHHHHHHHHcCCCEEEECC--CcCC------------C--------------C-----------------CHHHHHHHHH
Confidence 7788899999999998742 2210 0 0 0011233456
Q ss_pred HHHHhcCCCEEEecc-------CCHHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 219 WLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 219 ~i~~~~~~pv~vK~i-------~~~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
.+.+..++|+++-.. .+++..+++.+.. +-+|.-+ . .+...+.++.+..++++.|+. |.
T Consensus 117 ~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s---------~-~d~~~~~~~~~~~~~~~~v~~-G~-- 183 (281)
T cd00408 117 AVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDS---------S-GDLDRLTRLIALLGPDFAVLS-GD-- 183 (281)
T ss_pred HHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeC---------C-CCHHHHHHHHHhcCCCeEEEE-cc--
Confidence 666667899987632 5788888887622 2222221 1 344555566555544444443 42
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
...+...+.+|+++.+.|..-+....+.
T Consensus 184 -d~~~~~~l~~G~~G~i~~~~n~~p~~~~ 211 (281)
T cd00408 184 -DDLLLPALALGADGAISGAANVAPKLAV 211 (281)
T ss_pred -hHHHHHHHHcCCCEEEehHHhhCHHHHH
Confidence 5677888999999999887555444443
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.11 Score=49.17 Aligned_cols=88 Identities=8% Similarity=0.206 Sum_probs=61.6
Q ss_pred CceeEEeeecC-ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 123 GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 123 ~~~~~QLy~~~-d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
-+.++.+.... +.+...++++.++++|++.|.|+-.+.. +++
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y---------------------------- 176 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGY---------------------------- 176 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCC----------------------------
Confidence 46777765432 3344678888899999998877622110 011
Q ss_pred HHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHH-HcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAV-QAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~-~~Gad~i~vs 253 (323)
.-+...|+.++++++.+++||+.- ++.++++++.++ ..|||+|.+.
T Consensus 177 ------~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 177 ------RAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred ------CCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 012246899999999999998776 478999999987 5899999883
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.047 Score=49.12 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=54.9
Q ss_pred HHHHHHHHHhc----C-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 214 WKDVKWLQTIT----K-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 214 ~~~i~~i~~~~----~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
.+.|+.+++.+ + +-|-+..|.+.++++.+.++|++.++--+ .+.+++....+ . ++|++ =|
T Consensus 54 ~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~~~-~--~i~~i--PG 118 (222)
T PRK07114 54 HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVCNR-R--KVPYS--PG 118 (222)
T ss_pred HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--CC
Confidence 45566665433 2 33444468999999999999999986421 12234433332 2 45554 58
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 020636 289 VRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~i 308 (323)
+.|+.++..|+.+||+.|=+
T Consensus 119 ~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 119 CGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999999866
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.61 Score=43.41 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=59.2
Q ss_pred CCHHHHHHHHH-cCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH-HHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~~-~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~-di~kal~lGAd~V~i 308 (323)
.++++|+...+ .|+|.+.++. ||........-.++.|.+|.+.+ ++|+..=||=..+. ++.+++..|..-|=+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 56888887775 7999999874 45332101223678999999998 89999999888875 488899999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|.+
T Consensus 226 ~T~l 229 (276)
T cd00947 226 NTDL 229 (276)
T ss_pred ChHH
Confidence 8865
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.039 Score=55.27 Aligned_cols=247 Identities=15% Similarity=0.173 Sum_probs=131.8
Q ss_pred hhccccccccccc-CC-CCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l~-~~-~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|.... .. +++|++|+ .++.++.||+-|||-.. +|..+|.+.++.|...++... .+.++..+
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~Pi~sa~Mdtv------t~~~MAiaLAr~GGiGvih~n--l~~~~q~~ 84 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTA-DGTGTTIPLVVANMTAV------AGRRMAETVARRGGLVVLPQD--IPIDVVAE 84 (479)
T ss_pred CccceEecccccCccCCCceecccC-CCCccccceeecCCcch------hHHHHHHHHHHCCCceEeeCC--CCHHHHHH
Confidence 5999999998763 34 48899997 48899999999998553 577899999999987777742 33333222
Q ss_pred c---CC-Ccee-EEeeecCChHHHHHHHHHHHHcCCcEEEEecCCC-CCC-chHHHHhhccCCCCccccccccccccCCC
Q 020636 120 T---GP-GIRF-FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (323)
Q Consensus 120 ~---~~-~~~~-~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p-~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~~~~ 192 (323)
. .. .... -+...-.....+.+.++...+.++..+.|+-+.- ..| ...+|++.. +.... +.+....+.
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---~~~~~---V~diMt~~~ 158 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---DRFTQ---VRDVMSTDL 158 (479)
T ss_pred HHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---ccCCC---HHHhccCCc
Confidence 1 11 0000 0000111222344556666677777766532210 012 123444320 00000 000000000
Q ss_pred ccc-cchhhHH---HHhhc-------cC------CccCHHHHHHHHHhcC-----CCEEEe---cc--CCHHHHHHHHHc
Q 020636 193 DEA-NDSGLAA---YVAGQ-------ID------RSLSWKDVKWLQTITK-----LPILVK---GV--LTAEDARIAVQA 245 (323)
Q Consensus 193 ~~~-~~~~~~~---~~~~~-------~~------~~~~~~~i~~i~~~~~-----~pv~vK---~i--~~~e~a~~~~~~ 245 (323)
... ....+.+ .+... .| .-++..+|......-. .-+.+. ++ ...+.++.+.+.
T Consensus 159 itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~a 238 (479)
T PRK07807 159 VTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEA 238 (479)
T ss_pred eEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHh
Confidence 000 0000000 00000 00 0012333322221100 001111 11 224668889999
Q ss_pred CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 246 Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
|+|.|++....|. +...++.+++|++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 239 Gvd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 239 GVDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred CCCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 9999998653332 3456788999988775 577776 99999999999999999998754
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.038 Score=55.67 Aligned_cols=254 Identities=18% Similarity=0.149 Sum_probs=129.0
Q ss_pred Hhhccccccccccc---CCCCCccceeec--------CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCC
Q 020636 41 NAFSRILFRPRILI---DVSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW 109 (323)
Q Consensus 41 ~~~~~i~l~pr~l~---~~~~~d~~t~i~--------g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~ 109 (323)
..||++.|+|.... ..+++|++|.+- +.++..|+.-|+|... .+-+||.+..+.|...++...
T Consensus 10 ~tfddvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~Satmdtv------tgdalAiala~~gG~g~Ih~n 83 (502)
T PRK07107 10 RTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSV------SDDNMAIALAREGGLSFIFGS 83 (502)
T ss_pred ccccceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHH------hhHHHHHHHHHcCCCeEeeCC
Confidence 35999999998763 457889988875 4678889999988653 355899999998877776643
Q ss_pred CCCCHHHHHhc----C--CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC----CCCC-chHHHHhhccCCCCc
Q 020636 110 STSSVEEVAST----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT----PRLG-RREADIKNRFTLPPF 178 (323)
Q Consensus 110 s~~~~eei~~~----~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~----p~~g-~r~~d~~~~~~~~~~ 178 (323)
.++|+-++. . ........+.-.....+.+.++...+.+...+.|.=+. -..| ...+|++.....+ .
T Consensus 84 --~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~-~ 160 (502)
T PRK07107 84 --QSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSL-D 160 (502)
T ss_pred --CCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCC-C
Confidence 334442211 1 01000111111122334455666666677666554220 1112 1234443110000 0
Q ss_pred cccccccccccCCCcc-ccchhhHH---HHhhc-------cC------CccCHHHHHHHH-------HhcCCCEEEeccC
Q 020636 179 LTLKNFQGLDLGKMDE-ANDSGLAA---YVAGQ-------ID------RSLSWKDVKWLQ-------TITKLPILVKGVL 234 (323)
Q Consensus 179 ~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~-------~~------~~~~~~~i~~i~-------~~~~~pv~vK~i~ 234 (323)
..+..+.... .+... .....+.+ .+... .| .-++++++...+ +..+-.++...+.
T Consensus 161 ~~V~dIMt~~-~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~ 239 (502)
T PRK07107 161 TKVKDFMTPF-EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGIN 239 (502)
T ss_pred CCHHHHhCCC-CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccC
Confidence 0000000000 00000 00000000 00000 00 012233332221 1111112222332
Q ss_pred C---HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 T---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~---~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
. .+-++.+.++|+|.|++.+.-|. ....++.++++++..+++++ +..|.|-+.+++..++.+|||++.+|
T Consensus 240 ~~~~~~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~-V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 240 TRDYAERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVK-VGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred hhhHHHHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCce-EEeccccCHHHHHHHHHcCCCEEEEC
Confidence 2 35578899999999998543221 12236778888877643344 44599999999999999999999884
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.073 Score=47.61 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=59.5
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
..+.|+.+++.++ .-|....+.+.++++.+.++|++.++.-+ .+.+.+..+.+ . .+|++ =|+.|
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~----------~~~~vi~~a~~-~--~i~~i--PG~~T 117 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG----------LTPPLLKAAQE-G--PIPLI--PGVST 117 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--CCCCC
Confidence 3556888988875 33445567999999999999999997632 12245544443 2 45544 47999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
+.++.+++.+||+.|-+
T Consensus 118 ptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 118 PSELMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999987
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.082 Score=50.33 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=36.9
Q ss_pred cCHHHHHHHHHhcC-CCEEEec-cCCHHHHHHHHH-cCCCEEEEc
Q 020636 212 LSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK~-i~~~e~a~~~~~-~Gad~i~vs 253 (323)
..|+.|+++++.++ +||+.-| |.+.++|+..++ .|+|+|.+.
T Consensus 184 ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 184 ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 68999999999998 9998885 689999998887 679999883
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.75 Score=40.98 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHhcCCCEEEeccCCH---HHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeE
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGVLTA---EDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i~~~---e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
+.+.+.+.++.+++..+.|++--..... .........-+|.+.+..+...+ ..+..-+|+.++.. .. ..|+
T Consensus 82 HG~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~--~~~~ 157 (208)
T COG0135 82 HGDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RL--SKPV 157 (208)
T ss_pred CCCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cc--cCCE
Confidence 3445678899999887777654433221 23445556678999887642111 11233466666654 22 6789
Q ss_pred EEecCCCCHHHHHHHHHcCC-CEEEEccccccCc
Q 020636 284 FLDGGVRRGTDVFKALALGA-SGIFVSIMPCQCP 316 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGA-d~V~iG~~~~~~~ 316 (323)
+.+||+ +++.+.+|++++. .+|=+-+..=..|
T Consensus 158 ~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 158 MLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred EEECCC-CHHHHHHHHHhcCCceEEeccccccCC
Confidence 999998 6899999999987 8887776654444
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.074 Score=49.52 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=56.5
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-.. --.+++..+.+.+.+++||++.=|-.+..|+++ |-++|||+|++-.+..
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 45567899999999887664221111 122355556666677899998666666677665 3458999999999887
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 108 ~~~~~~~i 115 (280)
T PLN02417 108 GKTSQEGL 115 (280)
T ss_pred CCCCHHHH
Confidence 77655544
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.34 Score=43.21 Aligned_cols=42 Identities=19% Similarity=0.590 Sum_probs=35.9
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHc-CCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~-Gad~i~vs 253 (323)
..|+.++.+++..++||+.-| +.+.+++..+++. |+|+|.+.
T Consensus 170 ~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 170 ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 468889999998899988864 6899999999987 89999873
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.80 E-value=1 Score=42.17 Aligned_cols=189 Identities=14% Similarity=0.113 Sum_probs=107.2
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee-----cCCCCCCHHHHHh-------cCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-----s~~s~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++=..+.+-..+.|+-.++ |++.+.+.+|..+ ... -+.+.+... .+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 57788888654434555555777777788864432 3344556666322 222 344555542 35556
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.+++.|++++.+.- |.. + + + +.+-..+..
T Consensus 84 ai~~a~~A~~~Gad~v~v~p--P~y----------~--~--------------~-----------------~~~~l~~~f 118 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV--PYY----------N--K--------------P-----------------NQEALYDHF 118 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC--ccC----------C--C--------------C-----------------CHHHHHHHH
Confidence 66788889999999998652 331 0 0 0 000113345
Q ss_pred HHHHHhc-CCCEEEecc-------CCHHHHHHHHH-c-CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 218 KWLQTIT-KLPILVKGV-------LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 218 ~~i~~~~-~~pv~vK~i-------~~~e~a~~~~~-~-Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
+.+.+.+ ++||++=.+ .+++...++.+ . .+-+|.-+. .++..+.++....+.+..|+. |
T Consensus 119 ~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G 187 (294)
T TIGR02313 119 AEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-G 187 (294)
T ss_pred HHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c
Confidence 6677777 788887643 46777777764 2 233333221 134444555544443444433 3
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 288 GVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
.-..++.++.+||++++.|..-+....+.+
T Consensus 188 ---~d~~~~~~l~~Ga~G~is~~~n~~P~~~~~ 217 (294)
T TIGR02313 188 ---IELLCLPMLAIGAAGSIAATANVEPKEVAE 217 (294)
T ss_pred ---chHHHHHHHHCCCCEEEecHHhhCHHHHHH
Confidence 225566788999999998876555444433
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.094 Score=49.82 Aligned_cols=68 Identities=18% Similarity=0.064 Sum_probs=51.5
Q ss_pred HHHHHHHHHcC--CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~G--ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+-+..+.++| +|.|++...-|+ ....++.++.+++..+ -+.+..|.|-|++++..++.+|||+|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p--~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP--EHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC--CCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 45578888885 999998653332 1345677888887764 35666688999999999999999999776
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.062 Score=49.45 Aligned_cols=167 Identities=22% Similarity=0.266 Sum_probs=87.9
Q ss_pred cCcccccceEECcc-------cccccCCcHHHHHHHHHHHHc--CCceeecCCCC----CCHHHHH-hcCC-CceeEEee
Q 020636 66 LGFKISMPIMIAPT-------AMQKMAHPEGEYATARAASAA--GTIMTLSSWST----SSVEEVA-STGP-GIRFFQLY 130 (323)
Q Consensus 66 ~g~~~~~Pi~iaPm-------~~~~l~~~~~e~~~a~aa~~~--G~~~~vs~~s~----~~~eei~-~~~~-~~~~~QLy 130 (323)
+|.++|-|+.=.|+ +..+=...+.-+.+.+..++. ++|.++=++.+ ..+|+.. ++.. +.-.+ |-
T Consensus 50 LGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGl-iv 128 (265)
T COG0159 50 LGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGL-LV 128 (265)
T ss_pred ecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEE-Ee
Confidence 57788888877775 111111223345677777644 35676665543 2344421 1111 11111 12
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCC-chHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
+.-..+...++.+.+++.|.+.+.+. .|... +|-+.+...-. +... -+ +. .+. +|.. ...
T Consensus 129 pDLP~ee~~~~~~~~~~~gi~~I~lv--aPtt~~~rl~~i~~~a~---GFiY-~v-s~-~Gv--TG~~---------~~~ 189 (265)
T COG0159 129 PDLPPEESDELLKAAEKHGIDPIFLV--APTTPDERLKKIAEAAS---GFIY-YV-SR-MGV--TGAR---------NPV 189 (265)
T ss_pred CCCChHHHHHHHHHHHHcCCcEEEEe--CCCCCHHHHHHHHHhCC---CcEE-EE-ec-ccc--cCCC---------ccc
Confidence 23335555566777778888766543 23332 34333322110 0000 00 00 000 0000 001
Q ss_pred CccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 210 RSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.....+.++++|+.++.|+.+. ||.++++++.+.+. ||+|+|.
T Consensus 190 ~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 190 SADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred chhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 1123557999999999999999 89999999999999 9999993
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.077 Score=48.89 Aligned_cols=39 Identities=38% Similarity=0.550 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.++.+|+.++.|+.+. |+.++++++.+. .|+|+++|.
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEES
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEEC
Confidence 456899999999999999 899999999998 999999994
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=1 Score=42.09 Aligned_cols=76 Identities=25% Similarity=0.330 Sum_probs=59.0
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||-.. ....-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=|
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~-~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 232 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPYK-GEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINV 232 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCcC-CCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 5789988777 58999999864 44321 11223678899999988 8999999987777 6777899999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 233 ~T~l 236 (285)
T PRK07709 233 NTEN 236 (285)
T ss_pred ChHH
Confidence 8865
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.68 Score=43.26 Aligned_cols=77 Identities=25% Similarity=0.266 Sum_probs=57.5
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++. ||-... ...-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi 231 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLYKG-EPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKVNV 231 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEe
Confidence 4788888776 59999999874 553321 1123678899999988 7999998865555 4566789999999999
Q ss_pred ccccc
Q 020636 309 SIMPC 313 (323)
Q Consensus 309 G~~~~ 313 (323)
+|-+.
T Consensus 232 ~T~l~ 236 (284)
T PRK12737 232 ATELK 236 (284)
T ss_pred CcHHH
Confidence 98663
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.66 Score=43.30 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=57.1
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||.... ...-.++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|=+
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~-~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLYKK-TPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCcCC-CCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5688887776 69999999864 553321 1233678999999988 7999998865555 5566788999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 230 ~T~l 233 (282)
T TIGR01858 230 ATEL 233 (282)
T ss_pred CcHH
Confidence 9866
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.44 Score=44.10 Aligned_cols=87 Identities=24% Similarity=0.483 Sum_probs=55.2
Q ss_pred cCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCCCC-CCCCcchHHHHHHHHHHhcCCCeEEEe----------
Q 020636 224 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFLD---------- 286 (323)
Q Consensus 224 ~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg~~-~~~~~~~~~~l~~i~~~~~~~~pvia~---------- 286 (323)
++.||.+|-- .++++ ++.+.+.|-..|++.-+|-+- ...-..++..++.+++.. ...|||.|
T Consensus 129 t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~DpSHsvq~p~~ 207 (281)
T PRK12457 129 TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIFDVTHSLQCRDP 207 (281)
T ss_pred cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEEeCCccccCCCC
Confidence 4567777733 55555 566778899999988777541 111234556677776642 15899986
Q ss_pred -----cCCCCH--HHHHHHHHcCCCEEEEccc
Q 020636 287 -----GGVRRG--TDVFKALALGASGIFVSIM 311 (323)
Q Consensus 287 -----GGI~~~--~di~kal~lGAd~V~iG~~ 311 (323)
||-|.- .=+..|++.|||++++=+.
T Consensus 208 ~g~~s~G~re~v~~larAAvA~GaDGl~iEvH 239 (281)
T PRK12457 208 LGAASGGRRRQVLDLARAGMAVGLAGLFLEAH 239 (281)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCEEEEEec
Confidence 444432 2234677899999999753
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.15 Score=48.43 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=52.7
Q ss_pred HHHHHHHHcC--CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 237 EDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 237 e~a~~~~~~G--ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+-+..+.++| +|.|++...-|+ ....++.++.+++.. +.|.+..|+|-+.+++..++.+|||+|-+|
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 3367778889 799998653332 134567788888877 578888899999999999999999999887
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.097 Score=49.09 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCC-cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-. .--.+++..+.+.+.+++||++--|-.+-.|.++ |-++|||+|++..++.
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 4566789999999987766422111 1123455666666777899998667667766653 4458999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 107 ~~~~~~~l 114 (294)
T TIGR02313 107 NKPNQEAL 114 (294)
T ss_pred CCCCHHHH
Confidence 77765543
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.06 Score=53.90 Aligned_cols=243 Identities=16% Similarity=0.183 Sum_probs=134.0
Q ss_pred hhccccccccccc-CC-CCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l~-~~-~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|.... .. +++|++|. +.++++.||+-|||-- .+|..||.+.++.|...++.. +.++|+..+
T Consensus 13 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~mdt------vTe~~MAi~~A~~GGigvIh~--n~~i~~qae 83 (475)
T TIGR01303 13 TYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMTA------VAGRRMAETVARRGGIVILPQ--DLPIPAVKQ 83 (475)
T ss_pred CccceEEccCccCccCCCceeeccc-ccCccccceeeccchh------hHHHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 5999999998763 33 48899988 4579999999999844 378899999999999999986 345555433
Q ss_pred cC------C--CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC-CCCC-chHHHHhhccCCCCcccccccccccc
Q 020636 120 TG------P--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-PRLG-RREADIKNRFTLPPFLTLKNFQGLDL 189 (323)
Q Consensus 120 ~~------~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~-p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~ 189 (323)
.. + ....+.+.. ...+.+.++...+.+...+.+. |. -..| ...+|++.. +....+. +...
T Consensus 84 ~v~~VKv~eim~~~pvtv~p---~~tI~eA~~lm~~~~~~~~vVv-D~gklvGIVT~rDL~~~---~~~~~V~---dIMt 153 (475)
T TIGR01303 84 TVAFVKSRDLVLDTPITLAP---HDTVSDAMALIHKRAHGAAVVI-LEDRPVGLVTDSDLLGV---DRFTQVR---DIMS 153 (475)
T ss_pred HHhhcchhhccccCCeEECC---CCCHHHHHHHHHhcCCeEEEEE-ECCEEEEEEEHHHhhcC---CCCCCHH---HHcc
Confidence 21 1 001112221 2233455566666676655543 31 1112 123444210 0000000 0000
Q ss_pred CCCcc---c-cchhhHHHHhhc-------cC------CccCHHHHHHHHHhcC-----CCEEEe---cc--CCHHHHHHH
Q 020636 190 GKMDE---A-NDSGLAAYVAGQ-------ID------RSLSWKDVKWLQTITK-----LPILVK---GV--LTAEDARIA 242 (323)
Q Consensus 190 ~~~~~---~-~~~~~~~~~~~~-------~~------~~~~~~~i~~i~~~~~-----~pv~vK---~i--~~~e~a~~~ 242 (323)
.+... . .-....+.+... .| .-.+..+|......-. .-+.+. ++ ...+-++.+
T Consensus 154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~L 233 (475)
T TIGR01303 154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKAL 233 (475)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHH
Confidence 00000 0 000000000000 00 0112333332222110 011111 11 224668899
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.++|+|.|++...-|+. ....+.+++|++..+ ++|||+ |.+.|.+.+..++.+|||+|-+|
T Consensus 234 v~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 234 LDAGVDVLVIDTAHGHQ----VKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHhCCCEEEEeCCCCCc----HHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 99999999986543542 345677888887654 699999 77999999999999999999865
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.17 Score=48.25 Aligned_cols=96 Identities=20% Similarity=0.182 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCCEEEecc-CCH----HHHHHHHHcCCCEEEEcC---CCCCCCCCC-c--chHHHHHHHHHHhcCCCeE
Q 020636 215 KDVKWLQTITKLPILVKGV-LTA----EDARIAVQAGAAGIIVSN---HGARQLDYV-P--ATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i-~~~----e~a~~~~~~Gad~i~vs~---~gg~~~~~~-~--~~~~~l~~i~~~~~~~~pv 283 (323)
+.++.+++..+.|++++.. .+. +.++.+.++|+|+|.+.- ++.....+. . ...+.+.++++.+ ++||
T Consensus 91 ~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV 168 (334)
T PRK07565 91 ELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPV 168 (334)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcE
Confidence 4566666667889999964 344 336777889999999832 111111111 1 1245666666665 7899
Q ss_pred EEe--cCCCCHHHHHHHHH-cCCCEEEEcccc
Q 020636 284 FLD--GGVRRGTDVFKALA-LGASGIFVSIMP 312 (323)
Q Consensus 284 ia~--GGI~~~~di~kal~-lGAd~V~iG~~~ 312 (323)
++- +++.+..++.+++. .|||+|.+-..+
T Consensus 169 ~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 169 AVKLSPYFSNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCeEEEECCc
Confidence 875 45556778888775 899999884433
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.076 Score=48.51 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+-|+...+.||++|.|-.-+. .-..+++.|..+++.+ ++||+.-..|-+..++.++..+|||+|.+=-.++.
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~----~F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQS----YFGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRILT 136 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCC----cCCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCC
Confidence 3557888999999998743211 1123678888888887 89999999999999999999999999977554444
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.22 Score=45.92 Aligned_cols=41 Identities=34% Similarity=0.417 Sum_probs=35.0
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
..+.++.+|+..+.|+++. |+.+.++++.+.+. ||+++|..
T Consensus 188 ~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 188 LAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 3457999999889999998 67899999999986 99999943
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.95 Score=42.40 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=59.7
Q ss_pred CCHHHHHHHHH-cCCCEEEEcC---CCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEE
Q 020636 234 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 307 (323)
Q Consensus 234 ~~~e~a~~~~~-~Gad~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~ 307 (323)
.++++|+...+ .|+|.+-++- ||.... ... -.++.|.+|.+.+ ++|+..=||=..+ +++.+++..|..-|=
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 234 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYKG-EPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKVN 234 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccCC-CCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 56888888774 7999999864 453321 112 4788999999988 8999999988888 578889999999999
Q ss_pred Ecccc
Q 020636 308 VSIMP 312 (323)
Q Consensus 308 iG~~~ 312 (323)
++|-+
T Consensus 235 i~T~l 239 (288)
T TIGR00167 235 IDTEL 239 (288)
T ss_pred cChHH
Confidence 98865
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.93 Score=42.40 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=58.7
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||-.. ....-.++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|=+
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~-~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi 232 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPYK-GEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKINV 232 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeeccccccccC-CCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEe
Confidence 5789988776 57999999874 44322 11123578999999988 8999999988777 6677899999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 233 ~T~l 236 (286)
T PRK08610 233 NTEN 236 (286)
T ss_pred ccHH
Confidence 8865
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.12 Score=49.04 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=50.7
Q ss_pred HHHHHHHHH--cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~--~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+-+..+.+ +|+|.|++...-|+ ....++.++++++.++ +++||+ |.|-|++-+...+.+|||+|=+|
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 344677777 59999998643332 1345678888888775 577665 99999999999999999998655
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.12 Score=48.34 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=55.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-... -.+++..+.+.+.+++|||+.-|- +-.+.++. -++|||++++-.++.
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456678999999998776643221211 234566666666778999997775 66776653 347999999988877
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 106 ~~~~~~~ 112 (289)
T cd00951 106 TEAPQEG 112 (289)
T ss_pred CCCCHHH
Confidence 6554443
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.11 Score=45.33 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=66.0
Q ss_pred HHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEE-c---CCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIV-S---NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 215 ~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~v-s---~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
+.++.||+.- ..-+.+|--.+.+++....+ -+|.+-| + +.||.. ..+.-+.-+..+++..+ +..+-+|||+
T Consensus 103 ~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGFGGQk--Fme~mm~KV~~lR~kyp-~l~ievDGGv 178 (224)
T KOG3111|consen 103 ELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGFGGQK--FMEDMMPKVEWLREKYP-NLDIEVDGGV 178 (224)
T ss_pred HHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCCchhh--hHHHHHHHHHHHHHhCC-CceEEecCCc
Confidence 4577787753 33356666677788776655 4565544 2 233311 01112223333443332 5666699999
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcchhhhc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPLTEKIN 322 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~~ 322 (323)
. ++-+-++.++||+.+..|++.++.+..+++.
T Consensus 179 ~-~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi 210 (224)
T KOG3111|consen 179 G-PSTIDKAAEAGANMIVAGSAVFGAADPSDVI 210 (224)
T ss_pred C-cchHHHHHHcCCCEEEecceeecCCCHHHHH
Confidence 5 5778899999999999999999999988764
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.2 Score=42.12 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=59.1
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCC-CcchHHHHHHHHHHhcCCCeEEEecCCCCHH---------------
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGT--------------- 293 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~-~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~--------------- 293 (323)
.++++|+... +.|+|.+-++- ||-....+ ..-.++.|.+|.+.+ ++|+..=||=..+.
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~ 232 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKG 232 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhcccccc
Confidence 5688888777 57999999864 44322111 223678999999988 89999999877776
Q ss_pred -------HHHHHHHcCCCEEEEcccc
Q 020636 294 -------DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 294 -------di~kal~lGAd~V~iG~~~ 312 (323)
++.|++.+|..-|=++|-+
T Consensus 233 ~~g~~~e~~~kai~~GI~KiNi~T~l 258 (307)
T PRK05835 233 SKGVPFEFLQESVKGGINKVNTDTDL 258 (307)
T ss_pred ccCCCHHHHHHHHHcCceEEEeChHH
Confidence 7999999999999998865
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.16 Score=48.10 Aligned_cols=42 Identities=17% Similarity=0.592 Sum_probs=36.1
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHH-HcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAV-QAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~-~~Gad~i~vs 253 (323)
..|+.++.+++.+++||+.- ++.+.++++.++ +.|||+|.+.
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 35888999999999998776 578999999998 6899999883
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.073 Score=50.67 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCC--CEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~Ga--d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.+..+.++|+ |.|.+...-|+ .....+.++++++..+ ++|||+ |.|.|.+++..++.+|||++.+|
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh----~~~~~e~I~~ir~~~p-~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGH----SDSVINMIQHIKKHLP-ETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----hHHHHHHHHHHHhhCC-CCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 356788889965 99998432221 2345577888887763 356555 77999999999999999999887
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.086 Score=49.42 Aligned_cols=106 Identities=25% Similarity=0.334 Sum_probs=62.6
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
+-+.++.+- .+.+...+++++++++|+++|.++-.. .+. ..+.+.+. | .+. .. .+ ++
T Consensus 157 ~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~--~~~-~~~~~~~~--~---~~~----~~-----~g---g~- 213 (300)
T TIGR01037 157 DVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTL--RGM-KIDIKTGK--P---ILA----NK-----TG---GL- 213 (300)
T ss_pred CCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccC--Ccc-ccccccCc--e---eeC----CC-----Cc---cc-
Confidence 346777763 344556788889999999999875211 111 00111100 0 000 00 00 00
Q ss_pred HHHhhccCCccCHHHHHHHHHhcCCCEEE-eccCCHHHHHHHHHcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~~~pv~v-K~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+........++.+.++++.+++||+. .++.++++|.+++.+|||+|.+.
T Consensus 214 ---sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 214 ---SGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred ---cchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 00001113457788898888999875 57899999999999999999873
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.21 Score=47.45 Aligned_cols=42 Identities=12% Similarity=0.417 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHH-cCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQ-AGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~-~Gad~i~vs 253 (323)
..|+.++++++.+++||+.- ++.+.++++.+.+ .|||+|.+.
T Consensus 181 a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 46899999999999998776 5789999999997 799999884
|
|
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.15 Score=48.12 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=64.7
Q ss_pred HHHHHHHHhcC--CCEEEeccCC----HHHHHHHHHc---CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---c-CCC
Q 020636 215 KDVKWLQTITK--LPILVKGVLT----AEDARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 281 (323)
Q Consensus 215 ~~i~~i~~~~~--~pv~vK~i~~----~e~a~~~~~~---Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~~ 281 (323)
+.++.+++..+ .|+++ .+.+ .++|..+.+. ++|+|.+.|.+++ . ..+.+.+.++++++ + .++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~--~--G~~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR--R--GVFRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC--C--CCHHHHHHHHHHHHHhCCCCCe
Confidence 34677777665 34433 3333 3467767666 4899988876431 1 12344444554443 2 367
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.|+++||| +.+.+.+....|+|.+.+|+.+...|.
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~~~~ 281 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISKAPP 281 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCCCCC
Confidence 89999999 889999998999999999998876543
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.13 Score=48.46 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=53.9
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal----~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+|+|.+.++.|....-... -.+++..+++.+.+++|||+.-|- +-.+.++.. .+|||+|++-.++.
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456778999999998766642211111 234566666777778999986664 666666433 47999999988876
Q ss_pred cCcchh
Q 020636 314 QCPLTE 319 (323)
Q Consensus 314 ~~~~~~ 319 (323)
..+..+
T Consensus 113 ~~~~~~ 118 (303)
T PRK03620 113 TEAPQE 118 (303)
T ss_pred CCCCHH
Confidence 655443
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.12 Score=48.62 Aligned_cols=111 Identities=19% Similarity=0.230 Sum_probs=64.7
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
..|.++.|-+ +...+.++++.++++|+++++++ ++-. +....|+... ++.... +. .... .+
T Consensus 168 ~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~---~~~~~~--------~~-~~~~-gg-- 228 (299)
T cd02940 168 KIPVIAKLTP--NITDIREIARAAKEGGADGVSAI-NTVN-SLMGVDLDGT---PPAPGV--------EG-KTTY-GG-- 228 (299)
T ss_pred CCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEe-cccc-cccccccccC---Cccccc--------cC-CCCc-Cc--
Confidence 3578888853 44456788888999999998753 2111 1000011000 000000 00 0000 00
Q ss_pred HHHhhccCCccCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
++........|+.|.++++.+ ++||+.- |+.+.+|+.+.+.+|||+|.+.
T Consensus 229 --~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 229 --YSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVC 281 (299)
T ss_pred --ccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEc
Confidence 000112234689999999998 7887655 6899999999999999999874
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.079 Score=53.25 Aligned_cols=249 Identities=16% Similarity=0.226 Sum_probs=132.4
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|... ...+++|++|.+- +..+..||+-|||... ++..++.+.++.|...+++. ..+.++..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~v------T~~ela~ava~~GglG~i~~--~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTV------TEARMAIAMAREGGIGVIHK--NMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCc------CHHHHHHHHHhCCCCCEecC--CCCHHHHHH
Confidence 499999999865 3456788988874 5678899999999764 45578888888888888874 234444322
Q ss_pred c----C--CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCC-CCC-chHHHHhhccCCCCccccccccccccCC
Q 020636 120 T----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNRFTLPPFLTLKNFQGLDLGK 191 (323)
Q Consensus 120 ~----~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p-~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~~~ 191 (323)
. . .....-++..-.....+.+.++.+.+.++..+.|.=+.. ..| ...+|++...... ..+..+... .+
T Consensus 82 ~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~--~~V~dim~~--~~ 157 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLS--QPVSEVMTK--ER 157 (486)
T ss_pred HHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCC--CcHHHHcCC--CC
Confidence 1 1 111111111111222334556666677777665532110 011 1223332110000 000000000 00
Q ss_pred C---c-cccchhhHHHHhhcc-------C------CccCHHHHHHHHHh------cCCCEEEeccC-----CHHHHHHHH
Q 020636 192 M---D-EANDSGLAAYVAGQI-------D------RSLSWKDVKWLQTI------TKLPILVKGVL-----TAEDARIAV 243 (323)
Q Consensus 192 ~---~-~~~~~~~~~~~~~~~-------~------~~~~~~~i~~i~~~------~~~pv~vK~i~-----~~e~a~~~~ 243 (323)
. . ...-......+.... | .-.+.+++...... ....+.+.... +.+.++.+.
T Consensus 158 ~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~ 237 (486)
T PRK05567 158 LVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALV 237 (486)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHH
Confidence 0 0 000000000000000 0 01233332221111 11234555432 357889999
Q ss_pred HcCCCEEEEcC-CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 244 QAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 244 ~~Gad~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++|+|.|++.. ||.. ...++.+..+++..+ ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 238 ~agvdvivvD~a~g~~-----~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 238 EAGVDVLVVDTAHGHS-----EGVLDRVREIKAKYP-DVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HhCCCEEEEECCCCcc-----hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 99999988754 3321 234567777776653 688888 99999999999999999999875
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.2 Score=47.57 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=61.3
Q ss_pred CCceeEEeeecCCh----HHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccc
Q 020636 122 PGIRFFQLYVYKDR----NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (323)
Q Consensus 122 ~~~~~~QLy~~~d~----~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (323)
+.|..+.+....+. +...++++.++++|+++|.|+--+.. ..++. + . .
T Consensus 123 ~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~--------~qg~s-g--------------~-~---- 174 (318)
T TIGR00742 123 NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW--------LSGLS-P--------------K-E---- 174 (318)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh--------hcCCC-c--------------c-c----
Confidence 45677777543221 44567788888999998877643221 01111 0 0 0
Q ss_pred hhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 198 SGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
. ..-+...|+.+.++++.+ ++||+.- ++.+.+|+...+. |||+|.+.
T Consensus 175 -------~-~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 175 -------N-REIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred -------c-ccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 0 001235799999999887 7998655 5899999999886 99999884
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.86 Score=40.72 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=38.5
Q ss_pred CccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+..-|+.++++++...+|++.=|-.+.+.+..+.++|+++|.|.
T Consensus 143 ~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 143 PPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred CccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 34568889999998889988888899999999999999999874
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.14 Score=48.41 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=55.3
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal----~lGAd~V~iG~~~~ 313 (323)
+..+.+.|+++|.+.++.|....-... -.+++..+.+.+.+++|||+--|=.+..|.++.. .+|||+|++-.++.
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 445678999999998776642211111 2345555666677789999876655666666543 47999999999887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 115 ~~~~~~~ 121 (309)
T cd00952 115 LPLDVDT 121 (309)
T ss_pred CCCCHHH
Confidence 6665443
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.15 Score=47.98 Aligned_cols=83 Identities=28% Similarity=0.379 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+.+..+++.+.+++|||+--|=.+-.+.++ |-.+|||++++-.+..
T Consensus 31 v~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 45678999999999887764221111 123456666777777899999655555555543 3348999999999998
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 111 ~k~~~~gl 118 (299)
T COG0329 111 NKPSQEGL 118 (299)
T ss_pred cCCChHHH
Confidence 88776543
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.17 Score=46.84 Aligned_cols=82 Identities=24% Similarity=0.362 Sum_probs=55.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-... -.+++..+.+.+++++||++.-|-.+-.+.++ +-.+|||+|++-.++.
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 455678899999998876643222211 23456666666667899998777666666654 3347999999998887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 104 ~~~~~~~ 110 (281)
T cd00408 104 NKPSQEG 110 (281)
T ss_pred CCCCHHH
Confidence 7654443
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.29 E-value=2 Score=39.95 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=106.0
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hcC-C-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STG-P-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~s~~~~eei~-------~~~-~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-.++ ++ +.+.+.+|-. +.. + .+.+++.- ..+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 46677787544334555555677777778865443 22 3344555522 222 2 34566653 234566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
+.++.+.+++.|++++.+.- |... + + +.+-..+..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p--P~y~------------~--------------~-----------------~~~~i~~~~ 116 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT--PYYN------------K--------------P-----------------TQEGLYQHF 116 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC--CcCC------------C--------------C-----------------CHHHHHHHH
Confidence 77788889999999998752 3210 0 0 001113345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.++.||++=.. .+++..+++.+.. ..+-+= +.. .++..+.++.+..+++..|+. |
T Consensus 117 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~-~v~giK-------~s~-~d~~~~~~l~~~~~~~~~v~~-G--- 183 (285)
T TIGR00674 117 KAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEP-NIVAIK-------EAT-GNLERISEIKAIAPDDFVVLS-G--- 183 (285)
T ss_pred HHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCC-CEEEEE-------eCC-CCHHHHHHHHHhcCCCeEEEE-C---
Confidence 5666667888887632 5677888777654 322221 111 234445556555543454443 3
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
...-++..+.+||++.+.|..-+....+.+
T Consensus 184 ~d~~~~~~~~~G~~G~i~~~~~~~P~~~~~ 213 (285)
T TIGR00674 184 DDALTLPMMALGGKGVISVTANVAPKLMKE 213 (285)
T ss_pred chHHHHHHHHcCCCEEEehHHHhhHHHHHH
Confidence 224567788999999998776554444433
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.061 Score=51.65 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=65.8
Q ss_pred CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHH
Q 020636 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (323)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (323)
-|.++.|-+..+.+.+.++++.++++|+++|.++=..+. +. ++.. + ...+ ..+.+ .+..
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~---~~-~~~~----~---~~~~----~~gg~---SG~~--- 270 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLS---RD-GLKG----L---PNAD----EAGGL---SGRP--- 270 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccc---cc-cccc----c---ccCC----CCCCc---ccHH---
Confidence 478888876555556788889999999999987632211 00 1100 0 0000 00000 0000
Q ss_pred HHhhccCCccCHHHHHHHHHhc--CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 203 ~~~~~~~~~~~~~~i~~i~~~~--~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.....|+.++.+++.. ++||+ +.|+.+.++|...+.+|||.|.+.
T Consensus 271 ------~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 271 ------LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred ------HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 0123678899999888 68887 567899999999999999999763
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.16 Score=47.59 Aligned_cols=83 Identities=11% Similarity=0.039 Sum_probs=54.8
Q ss_pred HHHHHHcC-CCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEcccc
Q 020636 239 ARIAVQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMP 312 (323)
Q Consensus 239 a~~~~~~G-ad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~ 312 (323)
++.+.+.| +|+|.+.++.|....-... -.+++..+++.+.+++||++.=|-.+-.|.++ +-.+|||+|++..++
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 45677899 9999998876643221111 23455556666667899988655445555554 334899999999888
Q ss_pred ccCcchhhh
Q 020636 313 CQCPLTEKI 321 (323)
Q Consensus 313 ~~~~~~~~~ 321 (323)
...+..+++
T Consensus 107 y~~~~~~~i 115 (290)
T TIGR00683 107 YYKFSFPEI 115 (290)
T ss_pred CCCCCHHHH
Confidence 777665543
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.12 Score=49.33 Aligned_cols=104 Identities=24% Similarity=0.233 Sum_probs=64.8
Q ss_pred CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHH
Q 020636 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (323)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (323)
.|.++.|-+..+.+.+.++++.++++|+++|.++-.... . +. ..-|. ... . .+.-++.
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~--~---~~---~~~~~---~~~----~-----~gG~sG~-- 260 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTIS--R---PG---LLRSP---LAN----E-----TGGLSGA-- 260 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCccc--c---cc---ccccc---ccC----C-----CCccCCh--
Confidence 478888865455556778889999999999987632211 0 00 00000 000 0 0000000
Q ss_pred HHhhccCCccCHHHHHHHHHhc--CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 203 ~~~~~~~~~~~~~~i~~i~~~~--~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
......|+.++.+++.+ ++||+ +.|+.+.+|+.+++.+|||.|.+.
T Consensus 261 -----~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 261 -----PLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred -----hhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 01113578899999988 68877 557899999999999999999773
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.78 Score=42.16 Aligned_cols=90 Identities=26% Similarity=0.336 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCC--cchHHHHHHHHHHhcCCCeEEEe-
Q 020636 216 DVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD- 286 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~pvia~- 286 (323)
.++++.+ ++.||.+|-- .++++ ++.+...|-.-|++.-+|-+ .... ..++..++.+++ . ..|||+|
T Consensus 116 LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t-f~y~r~~~D~~~vp~~k~-~--~lPVi~Dp 190 (264)
T PRK05198 116 LLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS-FGYNNLVVDMRGLPIMRE-T--GAPVIFDA 190 (264)
T ss_pred HHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-cCCCCeeechhhhHHHhh-C--CCCEEEeC
Confidence 3444433 4667777732 56665 56777888888988777642 2111 234556666654 3 4899996
Q ss_pred --------------cCCCCHHH--HHHHHHcCCCEEEEcc
Q 020636 287 --------------GGVRRGTD--VFKALALGASGIFVSI 310 (323)
Q Consensus 287 --------------GGI~~~~d--i~kal~lGAd~V~iG~ 310 (323)
||-|.--- ...|+++|||++++=.
T Consensus 191 SHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 191 THSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred CccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 55544322 3367889999999964
|
|
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.79 Score=41.97 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCC--cchHHHHHHHHHHhcCCCeEEEe-
Q 020636 216 DVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD- 286 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~pvia~- 286 (323)
.++.+.+ ++.||.+|-- .++++ ++.+...|-+.|++.-+|-+ .... ..++..++.+++ . ..|||+|
T Consensus 108 LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t-f~y~r~~~D~~~ip~~k~-~--~~PVi~Dp 182 (258)
T TIGR01362 108 LLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS-FGYNNLVVDMRSLPIMRE-L--GCPVIFDA 182 (258)
T ss_pred HHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEEEeC
Confidence 3444433 4667777732 56655 66777889999998877642 2111 234556666655 3 5899996
Q ss_pred --------------cCCCCHHH--HHHHHHcCCCEEEEcc
Q 020636 287 --------------GGVRRGTD--VFKALALGASGIFVSI 310 (323)
Q Consensus 287 --------------GGI~~~~d--i~kal~lGAd~V~iG~ 310 (323)
||.|.--- ...|+++|||+++|=.
T Consensus 183 SHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 183 THSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred CccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 55554322 3357889999999965
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=45.46 Aligned_cols=74 Identities=24% Similarity=0.280 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe-----cCCCCH--------HHHHHHH
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVRRG--------TDVFKAL 299 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~-----GGI~~~--------~di~kal 299 (323)
+.+.+++..+.+.|||.|.+..+-. ..+-.|++..+..+++.. ++||.+. |++... .|+..+.
T Consensus 7 v~s~~~a~~A~~~GAdRiELc~~l~--~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~ 82 (201)
T PF03932_consen 7 VESLEDALAAEAGGADRIELCSNLE--VGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLR 82 (201)
T ss_dssp ESSHHHHHHHHHTT-SEEEEEBTGG--GT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEECCCcc--CCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHH
Confidence 3689999999999999999864211 123357888999988877 7888874 333322 4677788
Q ss_pred HcCCCEEEEcc
Q 020636 300 ALGASGIFVSI 310 (323)
Q Consensus 300 ~lGAd~V~iG~ 310 (323)
.+|||++.+|-
T Consensus 83 ~~GadG~VfG~ 93 (201)
T PF03932_consen 83 ELGADGFVFGA 93 (201)
T ss_dssp HTT-SEEEE--
T ss_pred HcCCCeeEEEe
Confidence 89999999993
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.16 Score=47.18 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCCEEEe---ccCCHHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHh----cCCCeEEEe
Q 020636 215 KDVKWLQTITKLPILVK---GVLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLD 286 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK---~i~~~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~~pvia~ 286 (323)
+.++.+++..+.+...+ .+.+.+++..+.++| +|+|-+.+.+...+ .+....+ +..+++ ..++-++++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEEL---DPAVLIL-KARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHHH---HHHHHHH-HHHHhhhhcCCCceEEEEe
Confidence 45677777654223444 236689999999999 99998766432110 1111111 111111 136789999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
|||. .+.+......|.|.+++|+.+...
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCcccccC
Confidence 9997 888888888999999999988766
|
QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.73 Score=42.28 Aligned_cols=87 Identities=21% Similarity=0.217 Sum_probs=61.0
Q ss_pred CHHHHHHHHHhcC--CCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.++ .++.+.. ..+.++| +.+.+.|.+.|.--- .+..++.+.++.+.+ ++||.
T Consensus 115 d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~--------~~~d~~~~~~l~~~~--~ipia 184 (265)
T cd03315 115 DVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPL--------PADDLEGRAALARAT--DTPIM 184 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCC--------CcccHHHHHHHHhhC--CCCEE
Confidence 3456778888763 4555542 2456665 455667877774311 123467778888776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
+++.+.+..|+.++++.+ +|.|++-
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999999999876 8999884
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.9 Score=39.96 Aligned_cols=187 Identities=17% Similarity=0.162 Sum_probs=105.3
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|..+.|+.-.+-.+.++-....+-+.+.|+-.++ + ++.+.+.+|.. +... -+.+++... .+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHH
Confidence 46677787544444555556788888888875443 2 22345555532 2222 245666542 35667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
+.++++.++++|++++++.- |... + + ..+-..+..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~--P~~~------------~--------------~-----------------~~~~l~~~~ 118 (284)
T cd00950 84 AIELTKRAEKAGADAALVVT--PYYN------------K--------------P-----------------SQEGLYAHF 118 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcc--cccC------------C--------------C-----------------CHHHHHHHH
Confidence 77888999999999988641 2210 0 0 000113345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
+.+.+..++|+++=.. .+++..+++.+.. +-+|.-+ . .+...+.++.+..++++.|+ +|.
T Consensus 119 ~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s---------~-~~~~~~~~~~~~~~~~~~v~-~G~- 186 (284)
T cd00950 119 KAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEA---------T-GDLDRVSELIALCPDDFAVL-SGD- 186 (284)
T ss_pred HHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEEC---------C-CCHHHHHHHHHhCCCCeEEE-eCC-
Confidence 5566667888886632 5677777777542 2222211 1 13344455555554455444 342
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
...+..++.+|+++.+.|..-+....+
T Consensus 187 --d~~~~~~~~~G~~G~~s~~~n~~p~~~ 213 (284)
T cd00950 187 --DALTLPFLALGGVGVISVAANVAPKLM 213 (284)
T ss_pred --hHhHHHHHHCCCCEEEehHHHhhHHHH
Confidence 244667788999999888764444433
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.16 Score=47.28 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=55.1
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal----~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+|++.+.++.|....-... -.+++..+.+.+++++|||+.=|-.+-.++++.. .+|||++++..++.
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~ 107 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYY 107 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTS
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecccc
Confidence 556778999999998776642211111 2345555666677789999866665666665433 48999999998887
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..+..+.+
T Consensus 108 ~~~s~~~l 115 (289)
T PF00701_consen 108 FKPSQEEL 115 (289)
T ss_dssp SSCCHHHH
T ss_pred ccchhhHH
Confidence 77665544
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.17 Score=46.13 Aligned_cols=74 Identities=24% Similarity=0.277 Sum_probs=55.2
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE-----ecCCCCH--------HHHHHHH
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFKAL 299 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia-----~GGI~~~--------~di~kal 299 (323)
+.+.+++..|.+.|||.|.+...- ...|..|++.++..+++.+ ++||.+ .|++... .|+..+.
T Consensus 8 v~s~~~a~~A~~~GAdRiELc~~L--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~ 83 (248)
T PRK11572 8 CYSMECALTAQQAGADRIELCAAP--KEGGLTPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVR 83 (248)
T ss_pred ECCHHHHHHHHHcCCCEEEEccCc--CCCCcCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 378999999999999999986421 1223357888899988877 788877 3444332 4667777
Q ss_pred HcCCCEEEEcc
Q 020636 300 ALGASGIFVSI 310 (323)
Q Consensus 300 ~lGAd~V~iG~ 310 (323)
.+|||+|.+|-
T Consensus 84 ~~GadGvV~G~ 94 (248)
T PRK11572 84 ELGFPGLVTGV 94 (248)
T ss_pred HcCCCEEEEee
Confidence 79999999993
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.4 Score=44.38 Aligned_cols=96 Identities=23% Similarity=0.395 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCCEEEecc-C-CHHHH----HHHHHcCCCEEEEcCCCCCCCC-CCc--chHHHHHHHHHHhcCCCeEE
Q 020636 214 WKDVKWLQTITKLPILVKGV-L-TAEDA----RIAVQAGAAGIIVSNHGARQLD-YVP--ATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i-~-~~e~a----~~~~~~Gad~i~vs~~gg~~~~-~~~--~~~~~l~~i~~~~~~~~pvi 284 (323)
.+.++++ ..++.||++|-- . +.++. +.+...|-.-+.+.-.|++... ... ..+..++.+++.. ..||+
T Consensus 124 ~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~ 200 (266)
T PRK13398 124 FELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPII 200 (266)
T ss_pred HHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEE
Confidence 4566666 456899999943 3 77774 4445678877777655554332 112 2345566666555 68999
Q ss_pred EecCCCC------HHHHHHHHHcCCCEEEEcccc
Q 020636 285 LDGGVRR------GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 285 a~GGI~~------~~di~kal~lGAd~V~iG~~~ 312 (323)
.|..=.. ......|+++||++++|-+.+
T Consensus 201 ~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 201 VDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred EeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 9543222 567778899999999998766
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.25 Score=46.28 Aligned_cols=154 Identities=25% Similarity=0.296 Sum_probs=85.9
Q ss_pred cccceEECcccccccCCcHHHHHHHHHHHHcC-Ccee-e--cC----C-C---CCC-------HHHHHhcCCCceeEEee
Q 020636 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMT-L--SS----W-S---TSS-------VEEVASTGPGIRFFQLY 130 (323)
Q Consensus 70 ~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G-~~~~-v--s~----~-s---~~~-------~eei~~~~~~~~~~QLy 130 (323)
+..|++++=++. +++.=...|+.++++| ..++ + |. . . ... ++.+++...-+.++.+-
T Consensus 90 ~~~p~i~si~g~----~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGS----TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 357877764332 3443357777888887 5444 3 10 0 0 011 22233333456777764
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCC
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (323)
.+.+.+.+++++++++|++++.++ ++- .|.+ .+.+... | .+ . ...+ + ++.....
T Consensus 166 --~~~~~~~~~a~~l~~~G~d~i~~~-nt~-~g~~-~~~~~~~--~-~~--~----~~~g--------g----~sg~~~~ 219 (301)
T PRK07259 166 --PNVTDIVEIAKAAEEAGADGLSLI-NTL-KGMA-IDIKTRK--P-IL--A----NVTG--------G----LSGPAIK 219 (301)
T ss_pred --CCchhHHHHHHHHHHcCCCEEEEE-ccc-cccc-cccccCc--e-ee--c----CCcC--------c----cCCcCcc
Confidence 244566778889999999988763 211 1110 0111000 0 00 0 0000 0 0000112
Q ss_pred ccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 211 SLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
...++.++++++.+++||+.- ++.+.+++.+++.+|||.|.+.
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 246888999999889998754 6789999999999999999873
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.31 Score=43.38 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~v 252 (323)
+.+.++.+++.++.|+++. |+.+.|+++.+.++|||+|++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 4678999999999999999 579999999999999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.2 Score=39.00 Aligned_cols=187 Identities=17% Similarity=0.144 Sum_probs=103.7
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-.++ + ++.+.+.||-. +... -+.+.+.- . +-+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 57888887654434555555777788888875442 2 23445555532 2222 34566663 3 6667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++++.++++|++++.+.- |.... + ...+ ..+..
T Consensus 90 ~i~~~~~a~~~Gadav~~~p--P~y~~-----------~-------------------~~~~-------------i~~~f 124 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLP--PYLTE-----------A-------------------PQEG-------------LAAHV 124 (303)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 77888999999999998642 32100 0 0001 12334
Q ss_pred HHHHHhcCCCEEEec----cCCHHHHHHHH-HcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 218 KWLQTITKLPILVKG----VLTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~----i~~~e~a~~~~-~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+.+.+.+++||++=. ..+++...++. +.. +-+|.-+ ..++..+.++.+..+++..|+ +| ..+
T Consensus 125 ~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK~s----------~~d~~~~~~~~~~~~~~f~vl-~G-~d~ 192 (303)
T PRK03620 125 EAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGFKDG----------VGDIELMQRIVRALGDRLLYL-GG-LPT 192 (303)
T ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEE-eC-CCc
Confidence 556666788877652 25677777776 432 2222222 123444555555554445444 33 221
Q ss_pred H-HHHHHHHHcCCCEEEEccccccCcc
Q 020636 292 G-TDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 292 ~-~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
. .-+..++.+||++...|..-+....
T Consensus 193 ~e~~~~~~~~~G~~G~is~~an~~P~~ 219 (303)
T PRK03620 193 AEVFAAAYLALGVPTYSSAVFNFVPEI 219 (303)
T ss_pred chhhHHHHHhCCCCEEEecHHhhhHHH
Confidence 2 2345567899999887765444333
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=94.97 E-value=3.2 Score=38.84 Aligned_cols=187 Identities=16% Similarity=0.131 Sum_probs=104.7
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-.++ ++ +.+.+.||.. +... -+.+++.- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 47778887544334555556788888888865442 33 3345555532 2222 35677764 34666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++++.++++|++++.+.- |... + + ...+ ..+..
T Consensus 88 ai~~a~~a~~~Gadav~~~p--P~y~------------~--------------~----s~~~-------------i~~~f 122 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP--PYLI------------N--------------G----EQEG-------------LYAHV 122 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCCC------------C--------------C----CHHH-------------HHHHH
Confidence 67788888999999998642 3210 0 0 0001 12344
Q ss_pred HHHHHhcCCCEEEec----cCCHHHHHHHHH-c-CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC-
Q 020636 218 KWLQTITKLPILVKG----VLTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR- 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~----i~~~e~a~~~~~-~-Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~- 290 (323)
+.+.+.+++|+++=. -.+++...++.+ . .+-+|.-+ ..++..+.++.+..++++.|+. |-.
T Consensus 123 ~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds----------~~d~~~~~~~~~~~~~~~~v~~--G~~~ 190 (296)
T TIGR03249 123 EAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDG----------IGDMEQMIEITQRLGDRLGYLG--GMPT 190 (296)
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEEe--CCCc
Confidence 556666778877652 257787777765 2 23333322 1244555555555544443333 322
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.-..++..+.+||++++-|..=+....
T Consensus 191 ~d~~~~~~~~~Ga~G~is~~~n~~P~~ 217 (296)
T TIGR03249 191 AEVTAPAYLPLGVTSYSSAIFNFIPHI 217 (296)
T ss_pred chhhHHHHHhCCCCEEEecHHHhhHHH
Confidence 123456778899999987754333333
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.43 Score=44.04 Aligned_cols=97 Identities=24% Similarity=0.389 Sum_probs=62.7
Q ss_pred CHHHHHHHHHhcCCCEEEecc-C-CHHHH----HHHHHcCCCEEEEcCCCCCCCCC---CcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVKGV-L-TAEDA----RIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-~-~~e~a----~~~~~~Gad~i~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~~pv 283 (323)
+...++.+.+ ++.||++|-- . +.++. ..+.+.|.+-|++.-+|-+..+. -...+..+..+++.. .+||
T Consensus 121 n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV 197 (260)
T TIGR01361 121 NFELLKEVGK-QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPI 197 (260)
T ss_pred CHHHHHHHhc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCE
Confidence 3456666644 6899999943 4 67774 44456888777764433322211 234677788887766 6999
Q ss_pred EEe----cCCCC--HHHHHHHHHcCCCEEEEcccc
Q 020636 284 FLD----GGVRR--GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 284 ia~----GGI~~--~~di~kal~lGAd~V~iG~~~ 312 (323)
+.| +|.|. ..-...|+++||++++|-+.|
T Consensus 198 ~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 198 IVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred EEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 994 33222 334457888999999998766
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.31 Score=44.33 Aligned_cols=83 Identities=30% Similarity=0.384 Sum_probs=56.6
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCC----CCCCCCcchH----HHHHHHHHHhcCCCeEEEec--CCCC-HH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA----RQLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRR-GT 293 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg----~~~~~~~~~~----~~l~~i~~~~~~~~pvia~G--GI~~-~~ 293 (323)
+.|+++-++.+.-.|+.+.++|++++.+|+++- ...|.+.-++ +.+.+|.+.+ ++||++|+ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 368999999999999999999999999987541 1245443333 3455566666 89999986 7666 43
Q ss_pred H----HHHHHHcCCCEEEEc
Q 020636 294 D----VFKALALGASGIFVS 309 (323)
Q Consensus 294 d----i~kal~lGAd~V~iG 309 (323)
. +.+..++|+.++.|-
T Consensus 86 ~v~~tv~~~~~aG~agi~IE 105 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIE 105 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEee
Confidence 3 345556899999984
|
... |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.8 Score=37.87 Aligned_cols=129 Identities=18% Similarity=0.107 Sum_probs=77.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEec-CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCC
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itv-d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (323)
..|.....+.++++.++|++.+-+.+ |.+.. | ..
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~-------------~--------------------------------~~ 42 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHFV-------------P--------------------------------NL 42 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCCC-------------C--------------------------------cc
Confidence 45777778889999999998876531 10100 0 01
Q ss_pred ccCHHHHHHHHHhcCCCEEEec--cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 211 SLSWKDVKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~~pv~vK~--i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
.+..+.++++++.++.|+.+.. -...+.++.+.++|+|+|.+ |++.. ....+.++.+.+ . .+.+..+-+
T Consensus 43 ~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~ 113 (211)
T cd00429 43 TFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITF--HAEAT----DHLHRTIQLIKE-L--GMKAGVALN 113 (211)
T ss_pred ccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--Cccch----hhHHHHHHHHHH-C--CCeEEEEec
Confidence 1345678888876655654432 23345688888999999988 44311 122333443332 2 455555545
Q ss_pred CCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
-.+..+..+.+..++|.+.++..+.+
T Consensus 114 ~~~~~~~~~~~~~~~d~i~~~~~~~g 139 (211)
T cd00429 114 PGTPVEVLEPYLDEVDLVLVMSVNPG 139 (211)
T ss_pred CCCCHHHHHHHHhhCCEEEEEEECCC
Confidence 55566667777777999988765433
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.19 Score=49.54 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=64.6
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
.-|.++.|-+ +...+.++++.++++|+++++++ ++-. +.-.-|++..-..| . +. +....+.-+|
T Consensus 168 ~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p-~-----~~----~~~~~gg~SG-- 231 (420)
T PRK08318 168 RLPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMP-I-----VN----GKSSHGGYCG-- 231 (420)
T ss_pred CCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCc-e-----ec----CCCCcccccc--
Confidence 3578888864 33346788888999999998853 2211 10001111000000 0 00 0000000000
Q ss_pred HHHhhccCCccCHHHHHHHHHhc---CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~---~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.......|+.|.++++.+ ++||+ +.||.+.+||...+.+|||+|.+.
T Consensus 232 -----~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 232 -----PAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVC 282 (420)
T ss_pred -----hhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheee
Confidence 001224688999999886 68876 557899999999999999999874
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.25 Score=46.15 Aligned_cols=82 Identities=16% Similarity=0.104 Sum_probs=53.5
Q ss_pred HHHHHHc-CCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEcccc
Q 020636 239 ARIAVQA-GAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMP 312 (323)
Q Consensus 239 a~~~~~~-Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~ 312 (323)
++.+.+. |+++|.+.++.|....-.. --.+++..+.+.+.+++|||+-=|-.+-.|+++ +..+|||+|++-.++
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4556778 9999999887764321111 123455556666667899998444444555443 345899999999888
Q ss_pred ccCcchhh
Q 020636 313 CQCPLTEK 320 (323)
Q Consensus 313 ~~~~~~~~ 320 (323)
...|..+.
T Consensus 107 y~~~~~~~ 114 (288)
T cd00954 107 YYKFSFEE 114 (288)
T ss_pred CCCCCHHH
Confidence 77665443
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.77 Score=45.77 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCC-EEE--eccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 214 WKDVKWLQTITKLP-ILV--KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 214 ~~~i~~i~~~~~~p-v~v--K~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
.+.-..+....+.. ++| -|+.+++|++.+.+ |+|++-|.. .+-..+.....+.++.. ..+. -.|++
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~----~lm~~~d~~~~~~~L~~---~~vK---ICGit 265 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGS----SLMAEDDLELAVRKLIL---GENK---VCGLT 265 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECH----HHcCCCCHHHHHHHHhc---cccc---cCCCC
Confidence 34444555554321 223 38899999999865 799998833 22222333444444422 1222 26899
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 020636 291 RGTDVFKALALGASGIFV 308 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~i 308 (323)
+.+|+..+..+|||++++
T Consensus 266 ~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 266 RPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CHHHHHHHHhCCCCEEee
Confidence 999999999999999987
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.26 Score=45.91 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=54.9
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
+..+.+.|+|+|.+.++.|....-... -.+++..+.+.+.+++||++.=|-.+-.|.++. -.+|||+|++..++.
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 455678999999997776643221111 234555566666778999986666666665543 347999999999887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 105 ~~~~~~~ 111 (285)
T TIGR00674 105 NKPTQEG 111 (285)
T ss_pred CCCCHHH
Confidence 7665443
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.55 Score=44.95 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+++.+.+.++++.+.|++++=+.++...... ..+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-------------------------------------------~~~~~d 175 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG-------------------------------------------EDLRED 175 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch-------------------------------------------HHHHHH
Confidence 4666667777777899998877654321000 012235
Q ss_pred HHHHHHHHHhc--CCCEEEec--cCCHHHHHHH----HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTIT--KLPILVKG--VLTAEDARIA----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK~--i~~~e~a~~~----~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+|+.+ +.++.+.. ..+.++|... .+.+++.|.- . ..+..++.+.++++.+ ++||++
T Consensus 176 ~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~ipi~~ 245 (357)
T cd03316 176 LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE-------P-VPPDDLEGLARLRQAT--SVPIAA 245 (357)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC-------C-CCccCHHHHHHHHHhC--CCCEEe
Confidence 66788899887 35677763 3567776544 3445554421 0 1123567788888776 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
+..+.+..|+.+++..| +|.|.+--..
T Consensus 246 dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 273 (357)
T cd03316 246 GENLYTRWEFRDLLEAGAVDIIQPDVTK 273 (357)
T ss_pred ccccccHHHHHHHHHhCCCCEEecCccc
Confidence 99999999999999876 8888775433
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.25 Score=46.30 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=53.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+|+|.+.++.|....-... -.+++..+.+.+.+++||++.=|- +-.+.++. -.+|||++++-.++.
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456678999999998776643221211 234555566666778999987663 55555543 348999999988887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 111 ~~~s~~~ 117 (296)
T TIGR03249 111 INGEQEG 117 (296)
T ss_pred CCCCHHH
Confidence 6665443
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.24 Score=46.30 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=56.3
Q ss_pred HHHHHH-cCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEcccc
Q 020636 239 ARIAVQ-AGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMP 312 (323)
Q Consensus 239 a~~~~~-~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~ 312 (323)
++.+.+ .|+++|.+.++.|....-.. --.+++..+++.+++++|||+.=|-.+-.|+++ |-.+|||+|++-.++
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 456678 99999999887764221111 123456666677777899999666666676654 345899999999988
Q ss_pred ccCcchhh
Q 020636 313 CQCPLTEK 320 (323)
Q Consensus 313 ~~~~~~~~ 320 (323)
...|..+.
T Consensus 110 y~~~~~~~ 117 (293)
T PRK04147 110 YYPFSFEE 117 (293)
T ss_pred CCCCCHHH
Confidence 77765443
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.15 Score=45.36 Aligned_cols=79 Identities=29% Similarity=0.336 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhcCCCEEEe--ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 213 SWKDVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK--~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
-.+.|+.+++..+ -+++. .++++++++.+.++|++.|+--| -+-+++..+. .. ++|++ =|+.
T Consensus 51 a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~----------~~~ev~~~a~-~~--~ip~~--PG~~ 114 (211)
T COG0800 51 ALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPG----------LNPEVAKAAN-RY--GIPYI--PGVA 114 (211)
T ss_pred HHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-hC--CCccc--CCCC
Confidence 3567999999876 34443 46999999999999999986422 1223333222 22 56665 4899
Q ss_pred CHHHHHHHHHcCCCEEE
Q 020636 291 RGTDVFKALALGASGIF 307 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~ 307 (323)
|+.++..|+++|++.+=
T Consensus 115 TptEi~~Ale~G~~~lK 131 (211)
T COG0800 115 TPTEIMAALELGASALK 131 (211)
T ss_pred CHHHHHHHHHcChhhee
Confidence 99999999999998764
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.17 Score=47.47 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=59.8
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC-----CCCCCcchH----HHHHHHHHHhcCCCeEEEec--CCCCHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 293 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~-----~~~~~~~~~----~~l~~i~~~~~~~~pvia~G--GI~~~~ 293 (323)
+.|+++-++.+.-.|+.+.++|+++|.+|+++=. ..|.+.-++ +.+.+|.+.+ ++||++|+ |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 4588888899999999999999999999876411 235443333 3444455555 79999975 777888
Q ss_pred HH----HHHHHcCCCEEEE
Q 020636 294 DV----FKALALGASGIFV 308 (323)
Q Consensus 294 di----~kal~lGAd~V~i 308 (323)
.+ .+...+||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3445589999998
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.15 Score=46.06 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=56.7
Q ss_pred CHHH-HHH-HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 235 TAED-ARI-AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 235 ~~e~-a~~-~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
+.++ ++. +...++|+|+++++. .+.+++.+.|..+++.. +.||++-.|+ +.+-+.+.|.. ||++.+||-|
T Consensus 164 ~~~~~v~dtver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~l 235 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSL 235 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEE
Confidence 4444 344 556889999998843 24578899999998887 6999999998 45667777776 9999999988
Q ss_pred ccCc
Q 020636 313 CQCP 316 (323)
Q Consensus 313 ~~~~ 316 (323)
-..-
T Consensus 236 K~~G 239 (263)
T COG0434 236 KKGG 239 (263)
T ss_pred ccCC
Confidence 6654
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=94.72 E-value=3.7 Score=38.33 Aligned_cols=190 Identities=16% Similarity=0.127 Sum_probs=106.0
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+..+ .++ +...+.||.. +... -+.+.+.. . +-+.
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 3667788754433455555678888888887544 222 3345666532 2222 35566664 3 6667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..+++++++++|++++.+.- |... + . +.+-..+..
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p--P~y~------------~--~-----------------------------~~~~i~~~f 117 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP--PYLT------------E--A-----------------------------PQEGLYAHV 117 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC--CCCC------------C--C-----------------------------CHHHHHHHH
Confidence 77888999999999998732 2210 0 0 000112345
Q ss_pred HHHHHhcCCCEEEec----cCCHHHHHHHHH-cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 218 KWLQTITKLPILVKG----VLTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~----i~~~e~a~~~~~-~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
+.+.+.+++|+++=. ..+++..+++.+ .. ..+.+= |. ..++..+.++.+..+++..|+ .|-.+.
T Consensus 118 ~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~p-nivgiK-------ds-~~d~~~~~~~~~~~~~~~~v~--~G~~~~ 186 (289)
T cd00951 118 EAVCKSTDLGVIVYNRANAVLTADSLARLAERCP-NLVGFK-------DG-VGDIELMRRIVAKLGDRLLYL--GGLPTA 186 (289)
T ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCC-CEEEEE-------eC-CCCHHHHHHHHHhcCCCeEEE--eCCCcc
Confidence 556666788887763 256777777765 33 222221 11 123444555555554344333 333322
Q ss_pred HH-HHHHHHcCCCEEEEccccccCcchh
Q 020636 293 TD-VFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 293 ~d-i~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
++ +..++.+||++++-|..-+....+.
T Consensus 187 d~~~~~~l~~Ga~G~is~~~n~~P~~~~ 214 (289)
T cd00951 187 EVFALAYLAMGVPTYSSAVFNFVPEIAL 214 (289)
T ss_pred hHhHHHHHHCCCCEEEechhhhhHHHHH
Confidence 33 5778899999998776554444443
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.5 Score=41.00 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=80.3
Q ss_pred CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHH
Q 020636 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (323)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (323)
-|..+-.-...++..+.+.+++.+++|+.++.|. |... .+| .++ +. + .+.. .
T Consensus 79 ~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iE-Dq~~-pk~-----cg~-~~-------------~-----~~~~--~ 130 (285)
T TIGR02320 79 KPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIE-DKLG-LKK-----NSL-FG-------------N-----DVAQ--P 130 (285)
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEe-ccCC-Ccc-----ccc-cC-------------C-----CCcc--c
Confidence 3555554334677888888999999999888763 3211 110 000 00 0 0000 0
Q ss_pred HHhhccCCccCHHHHHHHHHh-c--CCCEEEe----c-cCCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHH
Q 020636 203 YVAGQIDRSLSWKDVKWLQTI-T--KLPILVK----G-VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMAL 270 (323)
Q Consensus 203 ~~~~~~~~~~~~~~i~~i~~~-~--~~pv~vK----~-i~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l 270 (323)
. .+.+...+.|+..++. . +++|+.. . ....++ ++...++|||.|.+.. + ..+.+.+
T Consensus 131 l----~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--~------~~~~~ei 198 (285)
T TIGR02320 131 Q----ASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--R------KKDPDEI 198 (285)
T ss_pred c----cCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--C------CCCHHHH
Confidence 0 0111112345555443 2 3555555 1 123334 6788899999998841 1 2345666
Q ss_pred HHHHHHhcC---CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 271 EEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 271 ~~i~~~~~~---~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.++.+.++. ++|+++..+-.-...+.+.-++|.+.|..|..++
T Consensus 199 ~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 199 LEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLL 244 (285)
T ss_pred HHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence 666666543 4688765431111134555678999999986543
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.6 Score=40.53 Aligned_cols=83 Identities=28% Similarity=0.354 Sum_probs=50.2
Q ss_pred cCCCEEEec--cCCHHH----HHHHHHcCCCEEEEcCCCCCCCCCC--cchHHHHHHHHHHhcCCCeEEEe---------
Q 020636 224 TKLPILVKG--VLTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD--------- 286 (323)
Q Consensus 224 ~~~pv~vK~--i~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~pvia~--------- 286 (323)
++.||.+|- ..++++ ++.+...|-+-|++.-+|-+ .... ..++..++.+++ . ..|||+|
T Consensus 129 tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~t-Fgy~~lv~D~r~ip~mk~-~--~lPVI~DpSHsvQ~pg 204 (290)
T PLN03033 129 TGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMRE-A--NCPVVADITHSLQQPA 204 (290)
T ss_pred cCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEEEeCCccccCCC
Confidence 355666662 245555 56667788888888776642 2111 234556666654 3 6899985
Q ss_pred -----------cCCCCHH--HHHHHHHcCCCEEEEcc
Q 020636 287 -----------GGVRRGT--DVFKALALGASGIFVSI 310 (323)
Q Consensus 287 -----------GGI~~~~--di~kal~lGAd~V~iG~ 310 (323)
||-|.-- =...|+++|||++++=.
T Consensus 205 ~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEv 241 (290)
T PLN03033 205 GKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV 241 (290)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3333322 23467789999999965
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.31 Score=45.24 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=53.3
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-... -.+++..+++.+.+++||++-=|-.+..+.++ |-.+|||+|++..+..
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 456778999999998766643221111 22455556666666899987555556666654 3448999999998877
Q ss_pred cCcchh
Q 020636 314 QCPLTE 319 (323)
Q Consensus 314 ~~~~~~ 319 (323)
..+..+
T Consensus 107 ~~~~~~ 112 (284)
T cd00950 107 NKPSQE 112 (284)
T ss_pred CCCCHH
Confidence 655433
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.44 Score=44.55 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=60.3
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchH----HHHHHHHHHhcCCCeEEEec--CCCCHHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 294 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~~pvia~G--GI~~~~d 294 (323)
+.|+++-++.+.-.|+.+.++|++++.+|+++-. ..|.+.-++ +.+.+|.+.+ ++||++|. |..++..
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 4588888999999999999999999999876421 134333232 3445555555 79999975 8888888
Q ss_pred H----HHHHHcCCCEEEEc
Q 020636 295 V----FKALALGASGIFVS 309 (323)
Q Consensus 295 i----~kal~lGAd~V~iG 309 (323)
+ .+...+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34456899999983
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.1 Score=46.75 Aligned_cols=86 Identities=17% Similarity=0.030 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.+.++++...+.|.+-+++.-.--.+.++..-+...+..+++..+.+..+.++|||+-... .+....|||.+.+||++.
T Consensus 117 ~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~~-~~~~~~~ad~~VvGr~I~ 195 (216)
T PRK13306 117 WTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVEDL-KLFKGIPVKTFIAGRAIR 195 (216)
T ss_pred CCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhhH-HHHhcCCCCEEEECCccc
Confidence 4566666666666655544221111234433344445555554433456999999994322 123445999999999998
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
+.++..+
T Consensus 196 ~a~dp~~ 202 (216)
T PRK13306 196 GAADPAA 202 (216)
T ss_pred CCCCHHH
Confidence 8776543
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.5 Score=42.80 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=33.0
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+|+.|++++ .++||+.- ++.+.++++.+++.|||+|.+.
T Consensus 180 ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 180 ADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 4577788876 57887764 6799999999999999999884
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=94.34 E-value=1 Score=42.51 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
+|+.++++++.+++||+.- |+.+.+++..++..|||+|.+..
T Consensus 149 ~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 149 TMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 5788889999889999888 57899999999999999998843
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.98 Score=43.28 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=102.3
Q ss_pred hhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCC--cHHHHHHHHHH
Q 020636 20 KMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH--PEGEYATARAA 97 (323)
Q Consensus 20 ~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~--~~~e~~~a~aa 97 (323)
......+.++......++++.+.+....-.|.......... .|++...+.+ ..-+..+--.+
T Consensus 37 aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~----------------~~v~~~~l~~~~~~~~~~~~~ii 100 (336)
T COG2070 37 AGGLGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAP----------------APVNVNILVARRNAAEAGVDAII 100 (336)
T ss_pred cCCccccccccCCHHHHHHHHHHHHHhcCCcchhccccccc----------------ccchhheecccccchHHhhhhHH
Confidence 44556777777777788888888887777775422111111 2333222222 22344555566
Q ss_pred HHcCCceeecCCCCCCHHHHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCC
Q 020636 98 SAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (323)
Q Consensus 98 ~~~G~~~~vs~~s~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~ 176 (323)
..+|++.+..++...+-+.+..... +...+.... . .+..+++++.|+++++.. ..-..|
T Consensus 101 ~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~--~----~~~A~~~~~~G~d~vI~~-g~eAGG------------- 160 (336)
T COG2070 101 EGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI--T----VREALKAERAGADAVIAQ-GAEAGG------------- 160 (336)
T ss_pred hcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC--C----HHHHHHHHhCCCCEEEec-CCcCCC-------------
Confidence 6679999999886434444433221 223333222 2 245678889999988742 111111
Q ss_pred CccccccccccccCCCccccchhhHHHHhhccCCcc-CHHHHHHHHHhcC-CCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVKWLQTITK-LPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~-~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
|... .++.. +...+.++++.++ +||+.. |+.+.+++..++..|||+|.+.
T Consensus 161 --------------------------H~g~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~G 213 (336)
T COG2070 161 --------------------------HRGG-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMG 213 (336)
T ss_pred --------------------------cCCC-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhh
Confidence 0000 01223 3456889999998 899888 5789999999999999999873
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.29 E-value=2.1 Score=41.15 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=57.4
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCc----chHHHHHHHHHHhcCCCeEEEecCCCC--------------
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRR-------------- 291 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~pvia~GGI~~-------------- 291 (323)
.++++|+... +.|+|.+-++. ||-......| -.++.|.+|.+.++ ++|+..=||=..
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 5688888776 58999998864 5533211112 36789999998873 599998886544
Q ss_pred --------HHHHHHHHHcCCCEEEEcccc
Q 020636 292 --------GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 292 --------~~di~kal~lGAd~V~iG~~~ 312 (323)
-+++.|++.+|..-|=++|-+
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl 280 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDL 280 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHH
Confidence 467899999999999998865
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.3 Score=43.29 Aligned_cols=226 Identities=17% Similarity=0.127 Sum_probs=106.4
Q ss_pred cceeecCcccccceEECccccccc--CCc-HHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHH
Q 020636 61 MNTTVLGFKISMPIMIAPTAMQKM--AHP-EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (323)
Q Consensus 61 ~~t~i~g~~~~~Pi~iaPm~~~~l--~~~-~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~ 137 (323)
...+|.+.++++-|++|||+...- ..| +-.+..-+.-++-| ++++++....+.+ ....+ ....+|-....+-
T Consensus 14 ~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~--g~~~~--~~~gi~~d~~i~~ 88 (391)
T PLN02411 14 SPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPT--APGFP--HVPGIYSDEQVEA 88 (391)
T ss_pred CCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcc--cCcCC--CCCccCCHHHHHH
Confidence 346888999999999999964321 111 12234444444445 7777664332211 01111 1122332222355
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCC-ccccchhhHHHHhhccCCccCHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM-DEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
.+++++.+.+.|++.+ +.+- +.|+...-.......++ +.... .+.... ......+. ......-..++.++
T Consensus 89 ~~~l~~avH~~G~~i~-~QL~--H~Gr~~~~~~~~~~~~~-~~~s~---~~~~~~~~~~~~~~~--~~~~~~pr~mt~~e 159 (391)
T PLN02411 89 WKKVVDAVHAKGSIIF-CQLW--HVGRASHQVYQPGGAAP-ISSTN---KPISERWRILMPDGS--YGKYPKPRALETSE 159 (391)
T ss_pred HHHHHHHHHhcCCEEE-Eecc--CCCCCCccccccCCCCc-cCCcc---ccccCCcccccCCcc--ccCCCCCccCCHHH
Confidence 5777788888898753 3432 22332110000000000 00000 000000 00000000 00000113467788
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC---CC---------C--CC------cchHHHHHHHHHH
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR---QL---------D--YV------PATIMALEEVVKA 276 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~---~~---------~--~~------~~~~~~l~~i~~~ 276 (323)
|+++.+.+ .+-|++|.++|+|+|.+++..|. |. | |+ .-.++.+..|+++
T Consensus 160 I~~ii~~f-----------~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~ 228 (391)
T PLN02411 160 IPEVVEHY-----------RQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSA 228 (391)
T ss_pred HHHHHHHH-----------HHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 88887764 36689999999999999643221 10 1 21 1134677777777
Q ss_pred hcCC-CeEEEec-----------CCCCHHHHHHHHHc-------CCCEEEEccc
Q 020636 277 TQGR-IPVFLDG-----------GVRRGTDVFKALAL-------GASGIFVSIM 311 (323)
Q Consensus 277 ~~~~-~pvia~G-----------GI~~~~di~kal~l-------GAd~V~iG~~ 311 (323)
++.+ +-|=.++ ++..+..+.+.|+. |.|.+-+...
T Consensus 229 vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g 282 (391)
T PLN02411 229 IGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQP 282 (391)
T ss_pred cCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCC
Confidence 7533 2221221 12334556666652 5888877653
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.27 E-value=3.2 Score=38.78 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=56.7
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||.... ...-.++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|=+
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPYKG-EPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKVNI 231 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 4688888776 68999999864 453321 1123678999999988 7999998866555 4566788999999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 232 ~T~~ 235 (284)
T PRK12857 232 DTNI 235 (284)
T ss_pred CcHH
Confidence 9865
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.8 Score=41.50 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=58.4
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCc----chHHHHHHHHHHhcCCCeEEEecCCCCH-------------
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 292 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~pvia~GGI~~~------------- 292 (323)
.++++|+... +.|+|.+-++. ||-......| -.++.|.+|.+.++ ++|+..=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCchHhhHHHHhhccc
Confidence 5788888776 58999999864 5533211012 45788999988873 5999998876655
Q ss_pred ---------HHHHHHHHcCCCEEEEcccc
Q 020636 293 ---------TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ---------~di~kal~lGAd~V~iG~~~ 312 (323)
+++.+++.+|..-|=|+|-+
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl 278 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDL 278 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHH
Confidence 88999999999999999865
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.14 Score=46.25 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH-----------HHHHHHHcCCCE
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASG 305 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~-----------di~kal~lGAd~ 305 (323)
+-++.+.+.|+|+++++.. .+..+++..+ .-.+++.+||+ +. ....++..|||.
T Consensus 139 ~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCE
Confidence 3466778899999987531 1344555443 34457779997 33 477788999999
Q ss_pred EEEccccccCcchh
Q 020636 306 IFVSIMPCQCPLTE 319 (323)
Q Consensus 306 V~iG~~~~~~~~~~ 319 (323)
+.+||+....++-.
T Consensus 204 iVvGR~I~~a~dP~ 217 (230)
T PRK00230 204 IVVGRPITQAADPA 217 (230)
T ss_pred EEECCcccCCCCHH
Confidence 99999998877643
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.14 Score=46.07 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=38.6
Q ss_pred cCHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 212 LSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
...+.++.+++.+ +.|+++. |+.+.|+++.+.++|||+|++.+
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 4588899999998 8999888 57999999999999999999965
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.6 Score=40.07 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
++++.+.++|||.|.+-. +++ +..+++.+.+ ++|+|.-|
T Consensus 162 ~ra~a~~~AGA~~i~lE~---------v~~-~~~~~i~~~v--~iP~igiG 200 (254)
T cd06557 162 EDALALEEAGAFALVLEC---------VPA-ELAKEITEAL--SIPTIGIG 200 (254)
T ss_pred HHHHHHHHCCCCEEEEcC---------CCH-HHHHHHHHhC--CCCEEEec
Confidence 668889999999998843 333 6888888888 79999765
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=94.04 E-value=1.2 Score=41.73 Aligned_cols=169 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceeecCCCC-----------CCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC
Q 020636 91 YATARAASAAGTIMTLSSWST-----------SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (323)
Q Consensus 91 ~~~a~aa~~~G~~~~vs~~s~-----------~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~ 159 (323)
.++.++|++.+.|.++....+ ..+..+++...-|.+++| |.....+.++++-+.||..+++.
T Consensus 31 ~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHL----DH~~~~e~i~~ai~~GftSVM~D--- 103 (287)
T PF01116_consen 31 RAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHL----DHGKDFEDIKRAIDAGFTSVMID--- 103 (287)
T ss_dssp HHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEE----EEE-SHHHHHHHHHHTSSEEEEE---
T ss_pred HHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeec----ccCCCHHHHHHHHHhCccccccc---
Q ss_pred CCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc---CCCEEEecc---
Q 020636 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT---KLPILVKGV--- 233 (323)
Q Consensus 160 p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~pv~vK~i--- 233 (323)
.+..+-+.+++..+++.+.. ++.|=.=.-
T Consensus 104 ---------------------------------------------gS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~ 138 (287)
T PF01116_consen 104 ---------------------------------------------GSALPFEENIAITREVVEYAHAYGVSVEAELGHIG 138 (287)
T ss_dssp ----------------------------------------------TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSS
T ss_pred ---------------------------------------------CCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeee
Q ss_pred ----------------CCHHHHHHHH-HcCCCEEEEcCCCCCCCCCC--cch--HHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 234 ----------------LTAEDARIAV-QAGAAGIIVSNHGARQLDYV--PAT--IMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 234 ----------------~~~e~a~~~~-~~Gad~i~vs~~gg~~~~~~--~~~--~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.++++|+... +.|+|.+-++-..-+..... .|. ++.|.+|.+.++ ++|+..=||=..+
T Consensus 139 g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~ 217 (287)
T PF01116_consen 139 GKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-DIPLVLHGGSGLP 217 (287)
T ss_dssp SSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH-TSEEEESSCTTS-
T ss_pred ccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC-CCCEEEECCCCCC
Q ss_pred H-HHHHHHHcCCCEEEEcccc
Q 020636 293 T-DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ~-di~kal~lGAd~V~iG~~~ 312 (323)
. ++.+++.+|..-|=++|-+
T Consensus 218 ~e~~~~ai~~Gi~KiNi~T~~ 238 (287)
T PF01116_consen 218 DEQIRKAIKNGISKINIGTEL 238 (287)
T ss_dssp HHHHHHHHHTTEEEEEESHHH
T ss_pred HHHHHHHHHcCceEEEEehHH
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.48 Score=44.19 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=53.1
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-... -.+++..+.+.+++++||++.=|-.+-.|.++ +-.+|||+|++-.+..
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 456778999999997766643221221 23455566666777899987545445555554 3347999999998877
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 108 ~~~~~~~ 114 (292)
T PRK03170 108 NKPTQEG 114 (292)
T ss_pred CCCCHHH
Confidence 6654443
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.25 Score=46.32 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=59.9
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC-----CCCCCcchH----HHHHHHHHHhcCCCeEEEec--CCCCHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGT 293 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~-----~~~~~~~~~----~~l~~i~~~~~~~~pvia~G--GI~~~~ 293 (323)
+.|+++-++.+.-.|+.+.++|++++.+|+++.. ..|.+.-++ +.+.+|...+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 4588888999999999999999999998765421 235443333 3444555555 79999976 777777
Q ss_pred HH----HHHHHcCCCEEEEc
Q 020636 294 DV----FKALALGASGIFVS 309 (323)
Q Consensus 294 di----~kal~lGAd~V~iG 309 (323)
++ .++..+||.++.|-
T Consensus 93 ~v~r~V~~~~~aGaagi~IE 112 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLE 112 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 75 45556899999983
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.98 Score=39.40 Aligned_cols=87 Identities=25% Similarity=0.211 Sum_probs=59.7
Q ss_pred HHHHHHHHHhc-CCCEEEec-cCCH--HHHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCCCeEEEe-c
Q 020636 214 WKDVKWLQTIT-KLPILVKG-VLTA--EDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLD-G 287 (323)
Q Consensus 214 ~~~i~~i~~~~-~~pv~vK~-i~~~--e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~pvia~-G 287 (323)
.+.++++++.. +.|+++-. +.+. ..++.+.++|+|.|.+..... +... +.+..+++ . .++++++ =
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~-~--g~~~~v~~~ 111 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKK-Y--GKEVQVDLI 111 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHH-c--CCeEEEEEe
Confidence 56788888874 67877642 2232 357889999999999853211 1112 23333332 2 5777775 7
Q ss_pred CCCCHHHHHHHHHcCCCEEEEc
Q 020636 288 GVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~iG 309 (323)
+..|+.++.+++..|+|.|.++
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 8999999999888999999985
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.6 Score=43.85 Aligned_cols=87 Identities=22% Similarity=0.181 Sum_probs=59.1
Q ss_pred HHHHHhcCCCEEEeccC--CHH----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 218 KWLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i~--~~e----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+.+++..+.|+.+-... +++ .++.+.+.|+|+|.+.-... + .+....++.+.++++.+ ++||++- ++.+
T Consensus 108 ~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p-~-~~~~~~~~~i~~l~~~~--~~pvivK-~v~s 182 (299)
T cd02809 108 EEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP-V-LGRRLTWDDLAWLRSQW--KGPLILK-GILT 182 (299)
T ss_pred HHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC-C-CCCCCCHHHHHHHHHhc--CCCEEEe-ecCC
Confidence 34444444677666432 333 35666789999998843111 0 01113467888888877 6899885 5899
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 020636 292 GTDVFKALALGASGIFVS 309 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG 309 (323)
.+++.++..+|||+|.+.
T Consensus 183 ~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 183 PEDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999884
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.52 Score=44.22 Aligned_cols=110 Identities=21% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCCchHHHH-hhccCCCCccccccccccccCCCccccch
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADI-KNRFTLPPFLTLKNFQGLDLGKMDEANDS 198 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~--G~~al~itvd~p~~g~r~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (323)
..|.++.|-+..|.+.+.++++.+++. |+++++++ ++-..+.. -|. +.. | .+.. ....+.+ .+.
T Consensus 157 ~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~-id~~~~~---~---~~~~--~~~~gG~---SG~ 223 (294)
T cd04741 157 SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLV-LDPERET---V---VLKP--KTGFGGL---AGA 223 (294)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCcccc-ccCCCCC---c---ccCC--CCCCCCc---Cch
Confidence 467899997766776777888888888 88888753 22110000 000 000 0 0000 0000000 000
Q ss_pred hhHHHHhhccCCccCHHHHHHHHHhcC--CCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 199 GLAAYVAGQIDRSLSWKDVKWLQTITK--LPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~i~~~~~--~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+ ....++.++.+++..+ +||+.- ||.+.+||.+.+.+|||+|.+.
T Consensus 224 ~i---------~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ 272 (294)
T cd04741 224 YL---------HPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVG 272 (294)
T ss_pred hh---------HHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEc
Confidence 00 1124566777888874 787554 6899999999999999999884
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.75 Score=43.93 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=35.8
Q ss_pred CccCHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+...|+.++.+++.+ ++||+.- ++.++++++.+++ |||+|.+.
T Consensus 189 ~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIG 233 (333)
T PRK11815 189 PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIG 233 (333)
T ss_pred CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEc
Confidence 446799999999886 8998775 6799999999987 79999883
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.1 Score=38.47 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
...+.++|+++..++|++.=|..+.+++..+.++|+++|.+..
T Consensus 151 ~gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~GA~giAvis 193 (221)
T PRK06512 151 RNLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETGAEFVALER 193 (221)
T ss_pred CChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhCCCEEEEhH
Confidence 3567788888888999887777799999999999999998853
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.49 Score=45.66 Aligned_cols=42 Identities=31% Similarity=0.478 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+++.|..+++.. ++|||+ .||-+.+|+.+++.+|+|+|.++.
T Consensus 211 tW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 211 SWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 466777777766 799998 568899999999999999999953
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.39 Score=45.95 Aligned_cols=104 Identities=19% Similarity=0.243 Sum_probs=64.5
Q ss_pred CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHH
Q 020636 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (323)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (323)
.|.|+.|.+..+.+.+.++++.++++|+++++++ ++-. . + +. +. .+... ...+-+ .+..+
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~-NT~~-~-~--~~---~~-~~~~~------~~~GGl---SG~~i-- 270 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIAT-NTTV-S-R--SL---VQ-GPKNS------DETGGL---SGKPL-- 270 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEE-CCCC-c-c--cc---cc-Ccccc------CCCCcc---cCHHH--
Confidence 5789999776666678888999999999998864 3321 1 0 00 00 00000 000000 01111
Q ss_pred HHhhccCCccCHHHHHHHHHhc--CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 203 ~~~~~~~~~~~~~~i~~i~~~~--~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.....+.++.+++.. ++||+ +.||.+.+||...+.+|||.|.+.
T Consensus 271 -------~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 271 -------QDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred -------HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 112456677777766 47876 667999999999999999999763
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=3 Score=40.05 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=57.9
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCc----chHHHHHHHHHHhcCCCeEEEecCCCCH-------------
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 292 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~~pvia~GGI~~~------------- 292 (323)
.++++|+... +.|+|.+-++. ||-......| -.++.|.+|.+.++ ++|+..=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 5688888777 57999998864 5532211011 35788999998873 5999998876655
Q ss_pred ---------HHHHHHHHcCCCEEEEcccc
Q 020636 293 ---------TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ---------~di~kal~lGAd~V~iG~~~ 312 (323)
+++.||+.+|..-|=|+|-+
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl 280 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDI 280 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHH
Confidence 78999999999999998755
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.51 Score=45.18 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=62.6
Q ss_pred HHHhcCCCceeEEeee------cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccccccccc
Q 020636 116 EVASTGPGIRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (323)
Q Consensus 116 ei~~~~~~~~~~QLy~------~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~ 189 (323)
+|++..+.+..+.+-. ..+.+...++++++++.|++.+.|+...... + ..
T Consensus 201 ~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~-~~---------- 256 (337)
T PRK13523 201 AVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------A-RI---------- 256 (337)
T ss_pred HHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------C-CC----------
Confidence 3444434455555543 1256667788888889999888877543110 0 00
Q ss_pred CCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 190 GKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
...+...|+..+.+++.+++||+.-| +.++++|+.+++.| +|.|.+
T Consensus 257 -----------------~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 257 -----------------DVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred -----------------CCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 00112356778889999999987664 57999999999887 998865
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.15 Score=45.70 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
+.+.++.+++.+ +.|+++. |+.+.|+|+.+.++|||+|++.+
T Consensus 162 ~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 162 PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 467899999988 8999998 57999999999999999999955
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.32 Score=44.37 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=56.8
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC----CCCCcchHH----HHHHHHHHhcCCCeEEEecCCCCH---H
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIM----ALEEVVKATQGRIPVFLDGGVRRG---T 293 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~----~~~~~~~~~----~l~~i~~~~~~~~pvia~GGI~~~---~ 293 (323)
+-|+++=++.+.-.|+.+.++|+|.|.++++++.. .|...-+++ .++.+.+.++ ..||++|.---++ +
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~-~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP-LALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC-CCCEEEeCCCCCCcCHH
Confidence 46888888899999999999999999998764321 344333443 2333333331 4799998744433 5
Q ss_pred H----HHHHHHcCCCEEEE
Q 020636 294 D----VFKALALGASGIFV 308 (323)
Q Consensus 294 d----i~kal~lGAd~V~i 308 (323)
+ +.+.+.+||++|-|
T Consensus 90 ~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 5 44566799999998
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.74 E-value=6.1 Score=37.13 Aligned_cols=190 Identities=19% Similarity=0.216 Sum_probs=113.6
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHHh-------cCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-.++ + ++.+.|.||-.+ ... -+.+.+... .+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHH
Confidence 67888898754435555666778888888865443 2 234566666332 222 345666643 34566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.+++.|++++.+. +|..-+ | +.+-..+..
T Consensus 88 ai~lak~a~~~Gad~il~v--~PyY~k-----------~--------------------------------~~~gl~~hf 122 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPYYNK-----------P--------------------------------SQEGLYAHF 122 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCCCcC-----------C--------------------------------ChHHHHHHH
Confidence 6788899999999999864 233100 0 001123456
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+++.+.+++|+++=.+ .++|...++.+. -..+-+=.. ..+++.+.++....+.+--++.+|
T Consensus 123 ~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~-~nivgiKd~--------~gd~~~~~~~~~~~~~~~f~v~~G--- 190 (299)
T COG0329 123 KAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEH-PNIVGVKDS--------SGDLDRLEEIIAALGDRDFIVLSG--- 190 (299)
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcC-CCEEEEEeC--------CcCHHHHHHHHHhcCccCeeEEeC---
Confidence 7777888999888754 578888888772 223323111 125666777666553211244445
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
.-+.++-++.+|++++.-+..=+....+.
T Consensus 191 ~d~~~~~~~~~G~~G~is~~~N~~p~~~~ 219 (299)
T COG0329 191 DDELALPALLLGADGVISVTANVAPELAV 219 (299)
T ss_pred chHHHHHHHhCCCCeEEecccccCHHHHH
Confidence 34556777889999999887655444443
|
|
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.71 E-value=5.6 Score=37.73 Aligned_cols=209 Identities=19% Similarity=0.165 Sum_probs=0.0
Q ss_pred ceeecCccccc---ceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCcee-----------E
Q 020636 62 NTTVLGFKISM---PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF-----------F 127 (323)
Q Consensus 62 ~t~i~g~~~~~---Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~-----------~ 127 (323)
..+|.|+++.. |++||=+|..--+.-+--.++.++|+++|...+=- ++-.+.+.+......... +
T Consensus 1 ~~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKf-Qt~~~~d~~t~~~~~~~~~i~~~~~~~sly 79 (347)
T COG2089 1 MIKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKF-QTFYTPDIMTLESKNVPFKIKTLWDKVSLY 79 (347)
T ss_pred CeeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeee-ecccccccccccccCCccccccccccccHH
Q ss_pred Eeee--cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCC-ccccccccccccCCCccccchhhHHHH
Q 020636 128 QLYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 128 QLy~--~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
|+|- .-+.++..++.+.+++.|.-.+. .....+..|+-+.+..|. |+-
T Consensus 80 el~e~~~~p~e~~~~Lke~a~~~Gi~~~S-----SPfd~~svd~l~~~~~~ayKIa------------------------ 130 (347)
T COG2089 80 ELYEEAETPLEWHAQLKEYARKRGIIFFS-----SPFDLTAVDLLESLNPPAYKIA------------------------ 130 (347)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCeEEEe-----cCCCHHHHHHHHhcCCCeEEec------------------------
Q ss_pred hhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHH----HcCCC-EEEEcCCCCCCCCCCcchHHHHHHHHHHhc
Q 020636 205 AGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAV----QAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQ 278 (323)
Q Consensus 205 ~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~----~~Gad-~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 278 (323)
..+.++-.+-+.....+.|+++- |+.+.++.+.+. +.|.. .+.++......-......+..++.+.+..
T Consensus 131 ----S~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F- 205 (347)
T COG2089 131 ----SGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF- 205 (347)
T ss_pred ----CccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEE
Q 020636 279 GRIPVFLDGGVRRGTDVFKALALGASGI 306 (323)
Q Consensus 279 ~~~pvia~GGI~~~~di~kal~lGAd~V 306 (323)
.++|=.|.-=..-.-.+.|.++||..+
T Consensus 206 -n~~vGlSDHT~g~~a~l~AvALGA~vi 232 (347)
T COG2089 206 -NAIVGLSDHTLGILAPLAAVALGASVI 232 (347)
T ss_pred -CCccccccCccchhHHHHHHHhcccce
|
|
| >cd00439 Transaldolase Transaldolase | Back alignment and domain information |
|---|
Probab=93.71 E-value=3.9 Score=37.53 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC-----CCCCCCC-C-----CcchHHHHHHHHHHh---cCCC
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQLD-Y-----VPATIMALEEVVKAT---QGRI 281 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~-----~gg~~~~-~-----~~~~~~~l~~i~~~~---~~~~ 281 (323)
.++.+.+ -++++-+-.+.+.+.+..+.++|+++|...- ++..++. . +-+.+..+.++.+.. ..+.
T Consensus 131 A~~~L~~-~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~t 209 (252)
T cd00439 131 AIKDLIA-AGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQ 209 (252)
T ss_pred HHHHHHH-CCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCC
Confidence 3444444 3788888899999999999999999887631 1211110 0 114455555555443 2256
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.|++ ..+|+..++.+++ |+|.|-+.-.
T Consensus 210 kiL~-AS~r~~~~v~~l~--G~d~vT~~p~ 236 (252)
T cd00439 210 RVLW-ASFSDTLYVAPLI--GCDTVTTMPD 236 (252)
T ss_pred eEEE-EeeCCHHHHHHhh--CCCeeecCHH
Confidence 6655 4599999998766 9999987643
|
Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.57 Score=42.73 Aligned_cols=97 Identities=23% Similarity=0.337 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCEEEeccC---CH----HHHHHHHHcCCCEEEE--------cCCCC-CCCCCCcchHHHHHHHHHHhc
Q 020636 215 KDVKWLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIV--------SNHGA-RQLDYVPATIMALEEVVKATQ 278 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~---~~----e~a~~~~~~Gad~i~v--------s~~gg-~~~~~~~~~~~~l~~i~~~~~ 278 (323)
+.++.|......|+++=+-. +. +.++++.++|+++|.+ .+|.+ ..+-......+.+..++++..
T Consensus 59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~ 138 (243)
T cd00377 59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD 138 (243)
T ss_pred HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence 34666667778898776322 33 3467888999999999 22221 111111112334555555554
Q ss_pred C--CCeEEEe--------cCCCCHHHHHH-HHHcCCCEEEEccc
Q 020636 279 G--RIPVFLD--------GGVRRGTDVFK-ALALGASGIFVSIM 311 (323)
Q Consensus 279 ~--~~pvia~--------GGI~~~~di~k-al~lGAd~V~iG~~ 311 (323)
+ +++|++= .|+...-.-.+ +.++|||+|++-.+
T Consensus 139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4 6888885 23333333333 33589999999643
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.9 Score=43.37 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-----------cCCCEEEEccccccCcc
Q 020636 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-----------LGASGIFVSIMPCQCPL 317 (323)
Q Consensus 267 ~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-----------lGAd~V~iG~~~~~~~~ 317 (323)
+....+++.. +++-|++-|||.+++|...+|- +-.|++.+|++.+.+.+
T Consensus 202 L~tYs~lR~~--~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 202 LATYSELRSR--DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred HHHHHHHhcC--CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhh
Confidence 3444455443 3799999999999999987662 34799999998887654
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.36 Score=44.50 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.|+...+.||++|.+.... .....+++.|..+++.+ ++||+.--=|..+.++..+..+|||+|.+.-.++.
T Consensus 73 ~~~A~~~~~~GA~aisvlte~----~~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~ 145 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDE----RFFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAALD 145 (260)
T ss_pred HHHHHHHHhCCCeEEEEeccc----ccCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCC
Confidence 466888899999999874321 11123478888888887 89999877788899999999999999999766654
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.54 Score=45.48 Aligned_cols=91 Identities=22% Similarity=0.356 Sum_probs=61.5
Q ss_pred CHHHHHHHHHhcCCCEEEecc------CCHHHHHHHHHcCCCEEEEcC----CCCCC--------------CC-------
Q 020636 213 SWKDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSN----HGARQ--------------LD------- 261 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i------~~~e~a~~~~~~Gad~i~vs~----~gg~~--------------~~------- 261 (323)
++|+| .+..+.|.++..- .+.+..+++.++|+.+|++.- .|.|. ..
T Consensus 114 slEev---a~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~ 190 (364)
T PLN02535 114 TVEEV---ASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEV 190 (364)
T ss_pred CHHHH---HhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCC
Confidence 44554 4444567777643 244557889999999998832 11110 00
Q ss_pred ----------------CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 262 ----------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 262 ----------------~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
....+++.+..+++.. +.|||+ .||-+++|+.++..+|+|+|.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 191 VSDKGSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CccccccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0123466777777765 789888 67999999999999999999885
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=93.49 E-value=5.5 Score=35.76 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=56.4
Q ss_pred CHHHHHHHHHhcCCCEEEecc-CCH-HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 213 SWKDVKWLQTITKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-~~~-e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
..+.++++++.++.|+-+... .++ +....+.++|||+|.+ |.+. +........+..+++. .+-+-.+-.-.
T Consensus 53 g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~v--H~~q--~~~d~~~~~~~~i~~~---g~~iGls~~~~ 125 (229)
T PLN02334 53 GPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTF--HIEQ--ASTIHLHRLIQQIKSA---GMKAGVVLNPG 125 (229)
T ss_pred CHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEE--eecc--ccchhHHHHHHHHHHC---CCeEEEEECCC
Confidence 347888898887777655543 344 4477888999999988 4441 0111233455555432 23233333333
Q ss_pred CHHHHHHHHHcC--CCEEEEcccccc
Q 020636 291 RGTDVFKALALG--ASGIFVSIMPCQ 314 (323)
Q Consensus 291 ~~~di~kal~lG--Ad~V~iG~~~~~ 314 (323)
|..+..+.+..+ +|.+++|..+-+
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~~~v~pg 151 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLVMSVEPG 151 (229)
T ss_pred CCHHHHHHHHhccCCCEEEEEEEecC
Confidence 666666666544 999999876643
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.67 Score=43.11 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=60.0
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHH----HHHHHHHHhcCCCeEEEec--CCCCHHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 294 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~~pvia~G--GI~~~~d 294 (323)
+.|+++-++.++-.|+.+.++|++++.+|++|-. -.|.+..+++ ...+|.+.+ ++||++|. |..++..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 4688888999999999999999999999986521 2455555443 345555555 89999975 6666444
Q ss_pred H----HHHHHcCCCEEEE
Q 020636 295 V----FKALALGASGIFV 308 (323)
Q Consensus 295 i----~kal~lGAd~V~i 308 (323)
+ .+++..|+.++.|
T Consensus 95 vartV~~~~~aG~agi~i 112 (289)
T COG2513 95 VARTVRELEQAGAAGIHI 112 (289)
T ss_pred HHHHHHHHHHcCcceeee
Confidence 3 4556689999987
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=93.38 E-value=2.1 Score=41.42 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=85.9
Q ss_pred CcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 77 aPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
+|-++.++.. ++-..+.+.|.++|++++.+-+...+++.+.+..+ ++|+-.. +- ...++++.+.+.|- .+++.
T Consensus 159 sp~~f~g~~~-e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd---~lkI~s~-~~-~n~~LL~~~a~~gk-PVilk 231 (360)
T PRK12595 159 SPYDFQGLGV-EGLKILKQVADEYGLAVISEIVNPADVEVALDYVD---VIQIGAR-NM-QNFELLKAAGRVNK-PVLLK 231 (360)
T ss_pred CCccccCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCC---eEEECcc-cc-cCHHHHHHHHccCC-cEEEe
Confidence 3445665543 56669999999999999887777777777766532 6666321 11 11356776666664 34433
Q ss_pred cCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc---
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--- 233 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i--- 233 (323)
-+. . ....|+..... .+.. .+ ..++.-.. .+...|. .....++++..+..+++.+++||++--.
T Consensus 232 ~G~--~-~t~~e~~~Ave---~i~~---~G--n~~i~L~e-rg~s~yp-~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~ 298 (360)
T PRK12595 232 RGL--S-ATIEEFIYAAE---YIMS---QG--NGQIILCE-RGIRTYE-KATRNTLDISAVPILKQETHLPVMVDVTHST 298 (360)
T ss_pred CCC--C-CCHHHHHHHHH---HHHH---CC--CCCEEEEC-CccCCCC-CCCCCCcCHHHHHHHHHHhCCCEEEeCCCCC
Confidence 322 1 01222222110 0000 00 00000000 0000010 0112346788899999989999988311
Q ss_pred --C--CHHHHHHHHHcCCCEEEEcCCC
Q 020636 234 --L--TAEDARIAVQAGAAGIIVSNHG 256 (323)
Q Consensus 234 --~--~~e~a~~~~~~Gad~i~vs~~g 256 (323)
. .+..++.+..+|||++++--|-
T Consensus 299 G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 299 GRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred cchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 1 1235788899999999987775
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=93.35 E-value=2.8 Score=40.09 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=85.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+...++++.|.++|++++=+.. ++..++-. +.... . .+...+ ...+....+.+. .-.
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt------~~~~~~~~----~~~~~-~---~~~~~~--~~~~~~~~~~~~---~~~ 72 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQT------FKAEDLVS----KNAPK-A---EYQKIN--TGAEESQLEMLK---KLE 72 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeee------CCHHHhhC----ccccc-c---cccccC--CcCCCcHHHHHH---HhC
Confidence 46788889999999999999875432 11222211 00000 0 000000 000111111111 233
Q ss_pred cCHHHHHHHHH---hcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 212 LSWKDVKWLQT---ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 212 ~~~~~i~~i~~---~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.++..+++.+ ..++++ +-.+.+.+.+..+.+.|++.+.+... ....+.+|..+.+. ..|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~-~stpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~~---gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEF-LSTPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIARF---GKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcE-EEEeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCcEEEECC
Confidence 56666555554 446654 44567889999999999999998431 23456777777653 689999999
Q ss_pred CCCHHHHHHHHH----cCCC
Q 020636 289 VRRGTDVFKALA----LGAS 304 (323)
Q Consensus 289 I~~~~di~kal~----lGAd 304 (323)
..+.+++..|+. .|..
T Consensus 142 matl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 142 MATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 999999998875 4664
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=93.24 E-value=7 Score=36.27 Aligned_cols=190 Identities=17% Similarity=0.167 Sum_probs=105.3
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++ +.+.+.+|-. +..+ .+.++++- ..+-+.
T Consensus 6 ~~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~ 84 (289)
T PF00701_consen 6 FPALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEE 84 (289)
T ss_dssp EEEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHH
T ss_pred eeeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHH
Confidence 35667776544333444445777777788875443 22 2234555422 2222 35666664 346677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++++.++++|++++.+.- |.... . ...+ ..+..
T Consensus 85 ~i~~a~~a~~~Gad~v~v~~--P~~~~--------------~----------------s~~~-------------l~~y~ 119 (289)
T PF00701_consen 85 AIELARHAQDAGADAVLVIP--PYYFK--------------P----------------SQEE-------------LIDYF 119 (289)
T ss_dssp HHHHHHHHHHTT-SEEEEEE--STSSS--------------C----------------CHHH-------------HHHHH
T ss_pred HHHHHHHHhhcCceEEEEec--ccccc--------------c----------------hhhH-------------HHHHH
Confidence 77888999999999998753 33100 0 0011 12345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.++.|+++=.. .+++...++.+.. ..+-+-. .. .++..+.++.+....++.|+ .|
T Consensus 120 ~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~-nv~giK~-------s~-~~~~~~~~~~~~~~~~~~v~-~G--- 186 (289)
T PF00701_consen 120 RAIADATDLPIIIYNNPARTGNDLSPETLARLAKIP-NVVGIKD-------SS-GDLERLIQLLRAVGPDFSVF-CG--- 186 (289)
T ss_dssp HHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTST-TEEEEEE-------SS-SBHHHHHHHHHHSSTTSEEE-ES---
T ss_pred HHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCC-cEEEEEc-------Cc-hhHHHHHHHhhhcccCeeee-cc---
Confidence 6677778899988743 4667777776632 2222211 11 23344555555555455544 44
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+...+..++.+|+++++.|..-+....+.+
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~~P~~~~~ 216 (289)
T PF00701_consen 187 DDELLLPALAAGADGFISGLANVFPELIVE 216 (289)
T ss_dssp SGGGHHHHHHTTSSEEEESGGGTHHHHHHH
T ss_pred ccccccccccccCCEEEEcccccChHHHHH
Confidence 445578899999999999987554444433
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=93.22 E-value=2.9 Score=35.34 Aligned_cols=96 Identities=18% Similarity=0.086 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCCEEEecc-CCHHH-----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 215 KDVKWLQTITKLPILVKGV-LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i-~~~e~-----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.+..+++..+.|+++... ....+ ++.+.++|+|+|.+....+.. ..-..+.+.++++.+ .+++++..-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~-~~~~v~~~~~ 122 (200)
T cd04722 47 EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL---AREDLELIRELREAV-PDVKVVVKLS 122 (200)
T ss_pred cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhc-CCceEEEEEC
Confidence 4566777777889888754 22222 468899999999986432210 011345666666665 2577777655
Q ss_pred CCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.....+...+...|++.+.+......
T Consensus 123 ~~~~~~~~~~~~~g~d~i~~~~~~~~ 148 (200)
T cd04722 123 PTGELAAAAAEEAGVDEVGLGNGGGG 148 (200)
T ss_pred CCCccchhhHHHcCCCEEEEcCCcCC
Confidence 44433322246789999999776543
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.71 Score=44.68 Aligned_cols=42 Identities=31% Similarity=0.478 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+++.|..+++.. ++|||+ .||.+++|+.+++.+|+|+|.+..
T Consensus 212 tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 212 SWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 466677777766 799988 568899999999999999999953
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.86 Score=42.72 Aligned_cols=83 Identities=23% Similarity=0.197 Sum_probs=58.5
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchH----HHHHHHHHHhcCCCeEEEec--CCCCHHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPVFLDG--GVRRGTD 294 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~~pvia~G--GI~~~~d 294 (323)
+.++++-++.+.-.|+.+.++|+++|.+|+++-. ..|++.-++ +.+.+|.+.+ ++||++|. |..+...
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 4567777888999999999999999999876411 245543333 3455555555 89999975 6666555
Q ss_pred H----HHHHHcCCCEEEEc
Q 020636 295 V----FKALALGASGIFVS 309 (323)
Q Consensus 295 i----~kal~lGAd~V~iG 309 (323)
+ .++.++|+.++.|-
T Consensus 92 v~~tV~~~~~aGvagi~IE 110 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVME 110 (290)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34456899999983
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.053 Score=46.95 Aligned_cols=141 Identities=20% Similarity=0.238 Sum_probs=78.1
Q ss_pred eeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHH
Q 020636 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 125 ~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
.+|=|+ .+-..+.+++++++++| +-++|++|.-. | +. ......+|+
T Consensus 22 ~vfLl~--g~I~~l~~~v~~~~~~g-K~vfVHiDli~-G---------l~---------------------~D~~~i~~L 67 (175)
T PF04309_consen 22 VVFLLT--GDIGNLKDIVKRLKAAG-KKVFVHIDLIE-G---------LS---------------------RDEAGIEYL 67 (175)
T ss_dssp EEEE-S--EECCCHHHHHHHHHHTT--EEEEECCGEE-T---------B----------------------SSHHHHHHH
T ss_pred EEEEEc--CcHHHHHHHHHHHHHcC-CEEEEEehhcC-C---------CC---------------------CCHHHHHHH
Confidence 444444 45666778899999988 56678888522 2 11 001112233
Q ss_pred hhccCCc--c--CHHHHHHHHHhcCCCEEEec----cCCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH
Q 020636 205 AGQIDRS--L--SWKDVKWLQTITKLPILVKG----VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (323)
Q Consensus 205 ~~~~~~~--~--~~~~i~~i~~~~~~pv~vK~----i~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (323)
.....++ . ....++..++. ++.-+-+. ..+.+. .+.+.+...|+|.+- .+ .....+.++.+
T Consensus 68 ~~~~~~dGIISTk~~~i~~Ak~~-gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil-------Pg--~~p~vi~~i~~ 137 (175)
T PF04309_consen 68 KEYGKPDGIISTKSNLIKRAKKL-GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL-------PG--VMPKVIKKIRE 137 (175)
T ss_dssp HHTT--SEEEESSHHHHHHHHHT-T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE-------SC--CHHHHHCCCCC
T ss_pred HHcCCCcEEEeCCHHHHHHHHHc-CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc-------hH--HHHHHHHHHHH
Confidence 3322222 1 24456666553 55444442 233444 345568999999872 11 11234444444
Q ss_pred HhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 276 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 276 ~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.+ ++|||+.|=|++.+|+.++|..||.+|.....
T Consensus 138 ~~--~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~ 171 (175)
T PF04309_consen 138 ET--NIPIIAGGLIRTKEDVEEALKAGADAVSTSNK 171 (175)
T ss_dssp CC--SS-EEEESS--SHHHHHHHCCTTCEEEEE--H
T ss_pred hc--CCCEEeecccCCHHHHHHHHHcCCEEEEcCCh
Confidence 44 69999999999999999999999999988763
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=3.2 Score=39.43 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=57.9
Q ss_pred CCHHHHHHHHH-cCCCEEEEcC---CCCCCC-C---CCcchHHHHHHHHHHhcCCCeEEEecCCCCH-------------
Q 020636 234 LTAEDARIAVQ-AGAAGIIVSN---HGARQL-D---YVPATIMALEEVVKATQGRIPVFLDGGVRRG------------- 292 (323)
Q Consensus 234 ~~~e~a~~~~~-~Gad~i~vs~---~gg~~~-~---~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~------------- 292 (323)
.++++|+...+ .|+|.+-++. ||-... + ...-.++.|.+|.+.++ ++|+..=||=..+
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 56899887774 7999999874 553321 1 11236789999998873 5999998875333
Q ss_pred ---------HHHHHHHHcCCCEEEEcccc
Q 020636 293 ---------TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ---------~di~kal~lGAd~V~iG~~~ 312 (323)
+|+.|++.+|..-|=++|-+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl 271 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDG 271 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHH
Confidence 88999999999999888755
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.10 E-value=4.9 Score=35.10 Aligned_cols=42 Identities=26% Similarity=0.448 Sum_probs=36.2
Q ss_pred cCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..++.++++++..+ .||++-|..+.+++..+.++|+|+|++.
T Consensus 146 ~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 146 QGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 34788999988887 8998887668999999999999999884
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.25 Score=44.80 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHhcCC-CEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 212 LSWKDVKWLQTITKL-PILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~-pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.+.+.++.+++.++. |+++. |+.+.++++.+.++|||+|+|.+
T Consensus 170 ~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 170 VPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 357889999999888 99998 57999999999999999999954
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.79 Score=42.87 Aligned_cols=45 Identities=20% Similarity=0.456 Sum_probs=39.5
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.+.++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 187 ~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 187 EPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred CCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4678899999999999999999987 46788999999999988764
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=2.9 Score=37.50 Aligned_cols=41 Identities=12% Similarity=0.315 Sum_probs=32.5
Q ss_pred CHHHHHHHHHhc-----CCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~-----~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.++++++.. +.|+.+=|..+.+.+..+.++|||++++.
T Consensus 150 ~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 150 TLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 456677777654 37787777677999999999999999884
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=92.92 E-value=4.9 Score=36.59 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.+.++...++|||.|.+-. + +.+...++.+.+ ++|+++.|
T Consensus 159 i~Ra~ay~~AGAd~i~~e~---------~-~~e~~~~i~~~~--~~P~~~~g 198 (240)
T cd06556 159 IADALAYAPAGADLIVMEC---------V-PVELAKQITEAL--AIPLAGIG 198 (240)
T ss_pred HHHHHHHHHcCCCEEEEcC---------C-CHHHHHHHHHhC--CCCEEEEe
Confidence 3457888899999999842 2 677788888887 78998865
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.71 Score=43.12 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=39.3
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 184 ~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 184 TPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred CCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4778999999999999999999986 46788999999999888664
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.7 Score=40.17 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=59.6
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHHH----HHHHHHHhcCCC-eE
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRI-PV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~~-pv 283 (323)
+...++.+++. +.|+++=++.+.-.|+.+.++|+|.|.++...+. ..|+..-+++. ++.+.+.+ +. +|
T Consensus 3 t~~~lr~~~~~-g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~v 79 (264)
T PRK00311 3 TISDLQKMKQE-GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALV 79 (264)
T ss_pred CHHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcE
Confidence 34455555443 4688888888999999999999999986322110 13444445432 33333333 45 58
Q ss_pred EEecCCC----CHHH----HHHHHH-cCCCEEEE
Q 020636 284 FLDGGVR----RGTD----VFKALA-LGASGIFV 308 (323)
Q Consensus 284 ia~GGI~----~~~d----i~kal~-lGAd~V~i 308 (323)
++|-++. +.++ +.+.+. .||++|-|
T Consensus 80 vaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 80 VADMPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred EEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 8876644 4466 466777 89999998
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.7 Score=41.62 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=34.8
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
..|+.++.+++.+++||++-| +.++++++.+++.| +|.|.+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 272 PFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred hhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 457888999999999998876 68999999999865 999976
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.61 Score=44.74 Aligned_cols=74 Identities=20% Similarity=0.173 Sum_probs=45.0
Q ss_pred HHHHHH--cCCCEEEEcCCCCC----CCC------CCcchHHHHHHHHHHhcCCCeEEE-ecCCCCHHHHHH----HHHc
Q 020636 239 ARIAVQ--AGAAGIIVSNHGAR----QLD------YVPATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALAL 301 (323)
Q Consensus 239 a~~~~~--~Gad~i~vs~~gg~----~~~------~~~~~~~~l~~i~~~~~~~~pvia-~GGI~~~~di~k----al~l 301 (323)
++.+.+ .|+|.+.+---+.. ..+ ......+.+.++.+.+ .+|++. +||+ +.+++++ |+..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 566664 99999998432110 000 1111224566666655 677665 7777 6666665 4457
Q ss_pred CC--CEEEEccccccC
Q 020636 302 GA--SGIFVSIMPCQC 315 (323)
Q Consensus 302 GA--d~V~iG~~~~~~ 315 (323)
|| .+|.+||.....
T Consensus 267 Ga~f~Gvl~GRniwq~ 282 (340)
T PRK12858 267 GADFSGVLCGRATWQD 282 (340)
T ss_pred CCCccchhhhHHHHhh
Confidence 99 999999976543
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=92.77 E-value=6.5 Score=34.64 Aligned_cols=129 Identities=18% Similarity=0.078 Sum_probs=76.6
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.....+.++++.+.|++.+-+.+--.. | .| +..
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~-----------~-~~--------------------------------~~~ 47 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVDVMDGH-----------F-VP--------------------------------NLT 47 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCccCC-----------c-CC--------------------------------CcC
Confidence 356667778889999999998875320000 0 00 111
Q ss_pred cCHHHHHHHHHhcCCCEEE--eccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 212 LSWKDVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~v--K~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
+..+.++++++.++.|+.+ +.-...+....+.++|+|+|.+ |++.. ......++.+++ . .+.+..+-+-
T Consensus 48 ~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~ 118 (220)
T PRK05581 48 IGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF--HVEAS----EHIHRLLQLIKS-A--GIKAGLVLNP 118 (220)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--eeccc----hhHHHHHHHHHH-c--CCEEEEEECC
Confidence 3466788888766544323 2223344567778999999988 44410 112233433332 2 4444444456
Q ss_pred CCHHHHHHHHHcCCCEEEEccccc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.+..+..+.+..++|.+.+++...
T Consensus 119 ~t~~e~~~~~~~~~d~i~~~~~~~ 142 (220)
T PRK05581 119 ATPLEPLEDVLDLLDLVLLMSVNP 142 (220)
T ss_pred CCCHHHHHHHHhhCCEEEEEEECC
Confidence 677788888877899988876443
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=1 Score=39.35 Aligned_cols=117 Identities=23% Similarity=0.212 Sum_probs=76.4
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+-+....+.+...+.++.+-+.|++.+-++...+.
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~-------------------------------------------- 49 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ-------------------------------------------- 49 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--------------------------------------------
Confidence 444555678888888888888999998887643221
Q ss_pred hccCCccCHHHHHHHHHhcCCC-EEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 206 GQIDRSLSWKDVKWLQTITKLP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 206 ~~~~~~~~~~~i~~i~~~~~~p-v~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+++..+.- +-...+.+.++++.+.++|+|+|++ +|-+ .+.+ +..+.. .++.+
T Consensus 50 -------~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~-p~~~---------~~~~-~~~~~~--~~~~i 109 (187)
T PRK07455 50 -------PAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFT-PHVD---------PELI-EAAVAQ--DIPII 109 (187)
T ss_pred -------HHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEEC-CCCC---------HHHH-HHHHHc--CCCEE
Confidence 123345555543321 1122346779999999999999954 2221 1222 233333 45544
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEE
Q 020636 285 LDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~i 308 (323)
. | +.|..++.++..+|||.|.+
T Consensus 110 ~-G-~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 110 P-G-ALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred c-C-cCCHHHHHHHHHCCCCEEEE
Confidence 3 4 99999999999999999987
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.85 Score=42.65 Aligned_cols=45 Identities=18% Similarity=0.441 Sum_probs=39.3
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 186 ~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~ 232 (284)
T PRK12737 186 EPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVA 232 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeC
Confidence 4678999999999999999999987 46788999999999888764
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.2 Score=42.17 Aligned_cols=173 Identities=21% Similarity=0.259 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcC-Ccee---ecCCCCC----------CHHHH----HhcCCCceeEEeeecCChHHHHHHHHHHHHcC
Q 020636 88 EGEYATARAASAAG-TIMT---LSSWSTS----------SVEEV----ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAG 149 (323)
Q Consensus 88 ~~e~~~a~aa~~~G-~~~~---vs~~s~~----------~~eei----~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G 149 (323)
+.-...++...+++ ..++ +|+-.+. .++++ .+....|.++.|-+ +.+.+.++++.++++|
T Consensus 109 ~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P--~~~di~~iA~~~~~~g 186 (310)
T COG0167 109 EAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP--NITDIDEIAKAAEEAG 186 (310)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC--CHHHHHHHHHHHHHcC
Confidence 44457777777777 3333 3332111 12222 22233578888864 7888889999999999
Q ss_pred CcEEEEecCCCCCCchH-HHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC--C
Q 020636 150 FKAIALTVDTPRLGRRE-ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK--L 226 (323)
Q Consensus 150 ~~al~itvd~p~~g~r~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~ 226 (323)
+++++++ ++-.. |. -|.... +....+ ..+-+ .+..+ .....+.|+++++.++ +
T Consensus 187 ~Dgl~~~-NT~~~--~~~id~~~~-----~~~~~~----~~GGL---SG~~i---------kp~al~~v~~l~~~~~~~i 242 (310)
T COG0167 187 ADGLIAI-NTTKS--GMKIDLETK-----KPVLAN----ETGGL---SGPPL---------KPIALRVVAELYKRLGGDI 242 (310)
T ss_pred CcEEEEE-eeccc--ccccccccc-----ccccCc----CCCCc---Ccccc---------hHHHHHHHHHHHHhcCCCC
Confidence 9998864 32221 11 111100 000000 00000 00000 1134677888888876 8
Q ss_pred CEE-EeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCCCeEEEecCCCCHHHHH
Q 020636 227 PIL-VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVF 296 (323)
Q Consensus 227 pv~-vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~pvia~GGI~~~~di~ 296 (323)
||+ +.||.|.+||.+-+.+||+.|-|... -...++.-+ +....+.+.+ -.-|+.|-+|+.
T Consensus 243 pIIGvGGI~s~~DA~E~i~aGA~~vQv~Ta---l~~~Gp~i~~~I~~~l~~~l-------~~~g~~si~d~i 304 (310)
T COG0167 243 PIIGVGGIETGEDALEFILAGASAVQVGTA---LIYKGPGIVKEIIKGLARWL-------EEKGFESIQDII 304 (310)
T ss_pred cEEEecCcCcHHHHHHHHHcCCchheeeee---eeeeCchHHHHHHHHHHHHH-------HHcCCCCHHHHh
Confidence 865 55789999999999999999987431 112223333 2233333333 235677777765
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.71 E-value=3.3 Score=38.29 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.++|+.+.++|||.|++-+ .++ +...++.+.+ ++|+|.-|
T Consensus 164 i~ra~a~~eAGA~~i~lE~---------v~~-~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 164 LEDAKALEEAGAFALVLEC---------VPA-ELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred HHHHHHHHHCCCCEEEEcC---------CCH-HHHHHHHHhC--CCCEEEec
Confidence 4668888999999999843 334 7888888888 79999755
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=92.65 E-value=2 Score=41.11 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=35.0
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEE
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~v 252 (323)
+.++..+.+|+.+++||++-|-.++++++.+++.| +|.|.+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 272 QPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred cchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEe
Confidence 46778889999999999888766699999999876 999977
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.56 Score=43.13 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHHH----HHHHHHHhcCCCe-EEEecC---CCC-
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIP-VFLDGG---VRR- 291 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~~p-via~GG---I~~- 291 (323)
+.|+++=++.+.-.|+.+.++|+|.|.++...+. ..|+...+++. ++.+.+.+ +.| |++|-+ ..+
T Consensus 11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~fg~y~~~ 88 (254)
T cd06557 11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPFGSYQTS 88 (254)
T ss_pred CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCCCcccCC
Confidence 5688888888999999999999999975322111 23454445432 33333333 678 888765 444
Q ss_pred HHH----HHHHHH-cCCCEEEE
Q 020636 292 GTD----VFKALA-LGASGIFV 308 (323)
Q Consensus 292 ~~d----i~kal~-lGAd~V~i 308 (323)
.++ +.+.+. .||++|-|
T Consensus 89 ~~~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKL 110 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE
Confidence 333 567777 99999998
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=5 Score=36.81 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=81.1
Q ss_pred CcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 77 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 77 aPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
||-++.+++. ++=..+.+.++++|++++..-+....++.+.+. .-++|+-.. + -...++++.+.+.|- .+++.
T Consensus 56 s~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~---vdilqIgs~-~-~~n~~LL~~va~tgk-PVilk 128 (250)
T PRK13397 56 SAASFQGLGL-QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDY---LDVIQVGAR-N-MQNFEFLKTLSHIDK-PILFK 128 (250)
T ss_pred CCcccCCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhc---CCEEEECcc-c-ccCHHHHHHHHccCC-eEEEe
Confidence 4545555543 455688999999999988776666666766653 236666321 1 111356666655553 33333
Q ss_pred cCCCCCCchHHHHhhccCCCCcccc---ccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTL---KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV 233 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i 233 (323)
-+ .. ....|+.+... ++.. .++.-...+ ...|. .......+...+..+++.++.||++--.
T Consensus 129 ~G--~~-~t~~e~~~A~e---~i~~~Gn~~i~L~eRg---------~~~Y~-~~~~n~~dl~ai~~lk~~~~lPVivd~S 192 (250)
T PRK13397 129 RG--LM-ATIEEYLGALS---YLQDTGKSNIILCERG---------VRGYD-VETRNMLDIMAVPIIQQKTDLPIIVDVS 192 (250)
T ss_pred CC--CC-CCHHHHHHHHH---HHHHcCCCeEEEEccc---------cCCCC-CccccccCHHHHHHHHHHhCCCeEECCC
Confidence 22 11 11122221110 0000 000000000 00010 0001134566788888888999988633
Q ss_pred C-------CHHHHHHHHHcCCCEEEEcCCC
Q 020636 234 L-------TAEDARIAVQAGAAGIIVSNHG 256 (323)
Q Consensus 234 ~-------~~e~a~~~~~~Gad~i~vs~~g 256 (323)
. -+.-++.+..+|||++++--|-
T Consensus 193 Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 193 HSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 1 1355889999999988886664
|
|
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.58 E-value=2.9 Score=37.00 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 269 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 269 ~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
++.++++.. ++.|+-+-=||.+++++...=.- ||+|.+|+.+
T Consensus 197 L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSki 238 (268)
T KOG4175|consen 197 LLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKI 238 (268)
T ss_pred HHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHH
Confidence 455555554 37898887799999998765444 9999999865
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.91 Score=42.46 Aligned_cols=45 Identities=13% Similarity=0.398 Sum_probs=39.1
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. ...++.+++.+.|+.-|=+.
T Consensus 186 ~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 186 TPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4678899999999999999999986 45788999999999888664
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=92.50 E-value=5.1 Score=34.17 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=35.9
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..++.++++++..+.|+++-|..+.+++..+.++|+|++.+.
T Consensus 137 ~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 137 LGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 457888888887789998877667899999999999999884
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.31 E-value=1 Score=42.07 Aligned_cols=45 Identities=18% Similarity=0.447 Sum_probs=39.5
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 186 ~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK12857 186 EPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNID 232 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4778999999999999999999987 46788999999999888764
|
|
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.31 E-value=2.6 Score=35.24 Aligned_cols=87 Identities=23% Similarity=0.213 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCCEEEecc-CCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh----cCCCeEEEec
Q 020636 214 WKDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDG 287 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i-~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~~pvia~G 287 (323)
-+.+..+-+..+.-++.-+. .++++ +..|++..+|.|.+|..-|. ..++.+.+.+.+ .+++. +..|
T Consensus 29 akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-------h~~l~~~lve~lre~G~~~i~-v~~G 100 (143)
T COG2185 29 AKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-------HLTLVPGLVEALREAGVEDIL-VVVG 100 (143)
T ss_pred hHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-------HHHHHHHHHHHHHHhCCcceE-Eeec
Confidence 34555554555766776665 56766 56667999999999875432 234444444444 12444 4679
Q ss_pred CCCCHHHHHHHHHcCCCEEEE
Q 020636 288 GVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~i 308 (323)
|+-.++|..+..++|.+.+.-
T Consensus 101 Gvip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 101 GVIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred CccCchhHHHHHHhCcceeeC
Confidence 999999998888899998864
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=92.31 E-value=10 Score=36.24 Aligned_cols=195 Identities=18% Similarity=0.220 Sum_probs=103.2
Q ss_pred ceEECcccccccCCcHHH----HHHHHHHHHcCCcee-ecCCCCCCHHHHHhc-CCC-ce-----e-----EEeee--cC
Q 020636 73 PIMIAPTAMQKMAHPEGE----YATARAASAAGTIMT-LSSWSTSSVEEVAST-GPG-IR-----F-----FQLYV--YK 133 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e----~~~a~aa~~~G~~~~-vs~~s~~~~eei~~~-~~~-~~-----~-----~QLy~--~~ 133 (323)
|++||=+|.. | +|+ ..+.++|+++|.-.+ +=+ ...+++... .+. .+ | +.+|- .-
T Consensus 1 ~~iIAEig~N---H-~Gdl~~A~~lI~~A~~aGadaVKfQt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 73 (329)
T TIGR03569 1 TFIIAEAGVN---H-NGSLELAKKLVDAAAEAGADAVKFQT---FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLEL 73 (329)
T ss_pred CEEEEEeCCC---c-cCcHHHHHHHHHHHHHhCCCEEEeee---CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCC
Confidence 6788887663 3 354 378889999997644 222 233443221 111 11 1 11110 12
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc-c
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-L 212 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 212 (323)
+.+....+.+.+++.|...+.- |. ..+.-|+-..+.+| .-.+. ..+ .
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~st----pf-d~~svd~l~~~~v~----~~KIa-----------------------S~~~~ 121 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLST----PF-DLESADFLEDLGVP----RFKIP-----------------------SGEIT 121 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEE----eC-CHHHHHHHHhcCCC----EEEEC-----------------------ccccc
Confidence 3456667777888888765542 22 22233333333211 11100 011 2
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHH----HHHHcCCCE--EEE-c-CCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDAR----IAVQAGAAG--IIV-S-NHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~----~~~~~Gad~--i~v-s-~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
++..|+.+.+ ++.||+++ |..+.++.. .+.+.|.+. |++ . ..... -......+..++.+++.. .+||
T Consensus 122 n~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP-~~~~~~nL~~I~~Lk~~f--~~pV 197 (329)
T TIGR03569 122 NAPLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYP-APFEDVNLNAMDTLKEAF--DLPV 197 (329)
T ss_pred CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCC-CCcccCCHHHHHHHHHHh--CCCE
Confidence 4677887766 58999999 556777744 334678752 433 2 11111 111123566777777776 6899
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
..++--....-.+.|.++||+ +|=+.|
T Consensus 198 G~SdHt~G~~~~~aAvalGA~--iIEkH~ 224 (329)
T TIGR03569 198 GYSDHTLGIEAPIAAVALGAT--VIEKHF 224 (329)
T ss_pred EECCCCccHHHHHHHHHcCCC--EEEeCC
Confidence 987643333445677889999 555444
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=92.25 E-value=5 Score=35.35 Aligned_cols=76 Identities=26% Similarity=0.196 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCC-cchHHHHHHHHHHhcCCCe--EEEecCCCCHHHHHHHH----HcCCCEEEEc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIP--VFLDGGVRRGTDVFKAL----ALGASGIFVS 309 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~~~p--via~GGI~~~~di~kal----~lGAd~V~iG 309 (323)
.+++.+.+.|||.|.+.-.-|.-.++. ....+.+.++++.+. .+| +|..-|--+.+.+.++- .+|||.|-..
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 447788899999999753322211221 224456777777664 344 46666666666666543 4799999999
Q ss_pred cccc
Q 020636 310 IMPC 313 (323)
Q Consensus 310 ~~~~ 313 (323)
+.+.
T Consensus 152 TG~~ 155 (203)
T cd00959 152 TGFG 155 (203)
T ss_pred CCCC
Confidence 8775
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=92.24 E-value=2.6 Score=39.78 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=34.8
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHc-CCCEEEE
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIV 252 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~-Gad~i~v 252 (323)
..++.++.+++.+++||+.-| +.+.+++..+++. |+|.|.+
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 456788899999999998875 5789999999998 7999876
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.24 Score=53.73 Aligned_cols=101 Identities=29% Similarity=0.247 Sum_probs=65.6
Q ss_pred cCHHHHHHHHHhc-----CCCEEEeccCCHH---HHHHHHHcCCCEEEEcCCCC-CC---CC---CCcchHHH-HHHHHH
Q 020636 212 LSWKDVKWLQTIT-----KLPILVKGVLTAE---DARIAVQAGAAGIIVSNHGA-RQ---LD---YVPATIMA-LEEVVK 275 (323)
Q Consensus 212 ~~~~~i~~i~~~~-----~~pv~vK~i~~~e---~a~~~~~~Gad~i~vs~~gg-~~---~~---~~~~~~~~-l~~i~~ 275 (323)
+++|+++++.--. .-.|.||.+.-.- -|--..+..||.|.||+|-| +. +. ...-+|++ |.+-.+
T Consensus 1080 YSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQ 1159 (2142)
T KOG0399|consen 1080 YSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQ 1159 (2142)
T ss_pred ccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhh
Confidence 4678777764322 2458888653211 13345577899999999943 31 11 11223432 334333
Q ss_pred H-----hcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 276 A-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 276 ~-----~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
. +++++-+-.||+++||.|++-|-.+||+-..+++..
T Consensus 1160 tLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~p 1201 (2142)
T KOG0399|consen 1160 TLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAP 1201 (2142)
T ss_pred HHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccH
Confidence 2 345788889999999999999999999999998754
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.20 E-value=2.5 Score=40.27 Aligned_cols=96 Identities=19% Similarity=0.150 Sum_probs=61.1
Q ss_pred CHHHHHHHHHhcC-CCEEEec-c-----CCHHHHHHHH-HcCCCEEEEcCCCCCC--CCCCcchH----HHHHHHHHHhc
Q 020636 213 SWKDVKWLQTITK-LPILVKG-V-----LTAEDARIAV-QAGAAGIIVSNHGARQ--LDYVPATI----MALEEVVKATQ 278 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~-i-----~~~e~a~~~~-~~Gad~i~vs~~gg~~--~~~~~~~~----~~l~~i~~~~~ 278 (323)
.++.++.+|+..+ .|+++-. + .+.+++..+. ..++|++.+.-.-... ...+...+ +.|..+.+.+
T Consensus 99 ~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~- 177 (326)
T cd02811 99 LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL- 177 (326)
T ss_pred hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-
Confidence 3466777887775 7876653 2 1567665555 4899999884311100 11112223 5667777766
Q ss_pred CCCeEEEe--cCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 279 GRIPVFLD--GGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 279 ~~~pvia~--GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
++||++= |--.+.+++.++...|+|++.++.
T Consensus 178 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 -SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 7999983 433677788777789999999854
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.63 Score=39.95 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=49.0
Q ss_pred CHHHH-HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a-~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
..+.+ ..+.+.+.|.|.+- .| -....+.++.+.. .+|||+-|=|++-+|+..||..||-+|.-.
T Consensus 109 Al~~~~~~i~~~~pD~iEvL-------PG--v~Pkvi~~i~~~t--~~piIAGGLi~t~Eev~~Al~aGA~avSTs 173 (181)
T COG1954 109 ALEKGIKQIEKSEPDFIEVL-------PG--VMPKVIKEITEKT--HIPIIAGGLIETEEEVREALKAGAVAVSTS 173 (181)
T ss_pred HHHHHHHHHHHcCCCEEEEc-------Cc--ccHHHHHHHHHhc--CCCEEeccccccHHHHHHHHHhCcEEEeec
Confidence 34443 45567999999872 22 2345677777777 799999999999999999999999999754
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.2 Score=41.74 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=39.4
Q ss_pred CccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
|.+.++.++.+++.+++|+++-|. .+.++.+.+.++|++.|-+.
T Consensus 188 ~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 188 PKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFY 233 (286)
T ss_pred CCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEeh
Confidence 557889999999999999999987 78899999999999999874
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.86 Score=41.00 Aligned_cols=43 Identities=33% Similarity=0.357 Sum_probs=34.1
Q ss_pred cCHHHHHHHHHhcCCCEEEe---ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 212 LSWKDVKWLQTITKLPILVK---GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK---~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.+.++++.+++..+..+-+| ||.+.++|...+++||+.|-.|+
T Consensus 164 at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 164 ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCc
Confidence 35678888888876555566 67999999999999999996653
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=92.06 E-value=2.9 Score=39.93 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=33.3
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
.++..+++|+.+++||++-+ +.++++++.+++.| +|.|-+
T Consensus 280 ~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 280 FLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 46678899999999998875 46899999999876 898866
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=92.00 E-value=8.8 Score=35.37 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHH
Q 020636 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (323)
Q Consensus 89 ~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d 168 (323)
+=..+.+.|+++|++++.+-+...+++.+.+.. -++|+-.. + -....+++.+.+.|- .+++.-+ ..+ ...+
T Consensus 77 gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~---d~lkI~s~-~-~~n~~LL~~~a~~gk-PVilk~G--~~~-t~~e 147 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYA---DILQIGAR-N-MQNFELLKEVGKQGK-PVLLKRG--MGN-TIEE 147 (260)
T ss_pred HHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhC---CEEEECcc-c-ccCHHHHHHHhcCCC-cEEEeCC--CCC-CHHH
Confidence 344788888999998887767666677665542 25555321 1 111245555555553 3333322 211 1122
Q ss_pred HhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEE-ec-c-----CCHHHHHH
Q 020636 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILV-KG-V-----LTAEDARI 241 (323)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~v-K~-i-----~~~e~a~~ 241 (323)
+.+... .+.-....+... .. .+...| .+..+...++..+..+++.++.||++ -. . .....++.
T Consensus 148 ~~~Ave---~i~~~Gn~~i~l---~~---rG~s~y-~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~a 217 (260)
T TIGR01361 148 WLYAAE---YILSSGNGNVIL---CE---RGIRTF-EKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKA 217 (260)
T ss_pred HHHHHH---HHHHcCCCcEEE---EE---CCCCCC-CCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHH
Confidence 221110 000000000000 00 000000 00112346788899999888999988 32 1 12566788
Q ss_pred HHHcCCCEEEEcCCC
Q 020636 242 AVQAGAAGIIVSNHG 256 (323)
Q Consensus 242 ~~~~Gad~i~vs~~g 256 (323)
+...|||++++--|-
T Consensus 218 Ava~Ga~gl~iE~H~ 232 (260)
T TIGR01361 218 AIAAGADGLMIEVHP 232 (260)
T ss_pred HHHcCCCEEEEEeCC
Confidence 999999998876554
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.4 Score=43.26 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=33.7
Q ss_pred CHHHHHHHHHhc--CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.+..+++.+ ++||+ +.||.+.+||.+.+.+||+.|-+.
T Consensus 327 sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 327 STEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeec
Confidence 466788888877 57765 447899999999999999999873
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.1 Score=41.92 Aligned_cols=45 Identities=16% Similarity=0.448 Sum_probs=39.2
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 186 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 186 EPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4678999999999999999999986 46788999999999888664
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=91.94 E-value=3.6 Score=35.44 Aligned_cols=42 Identities=36% Similarity=0.456 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhcCCCEEEecc-CCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-~~~e~a~~~~~~Gad~i~vs~ 254 (323)
..+.++++.+.++.|++..|. .+.|++..++++||-++..||
T Consensus 132 ~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~ 174 (181)
T COG1954 132 MPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSN 174 (181)
T ss_pred cHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecc
Confidence 356889999999999999974 899999999999998887766
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.71 Score=42.11 Aligned_cols=82 Identities=28% Similarity=0.362 Sum_probs=56.9
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHH----HHHHHHHHhcCCCeEEEecCC--CCHHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDGGV--RRGTD 294 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~~pvia~GGI--~~~~d 294 (323)
+.|+++=++.+.-.|+.+.++|+|++.+++++.. ..|....+++ .+..|.+.+ .+||++|+-. .+..+
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~ 85 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALN 85 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHH
Confidence 4678888888899999999999999999876532 1344444443 334444444 7999999755 34344
Q ss_pred H----HHHHHcCCCEEEE
Q 020636 295 V----FKALALGASGIFV 308 (323)
Q Consensus 295 i----~kal~lGAd~V~i 308 (323)
+ .+.+..|+++|.|
T Consensus 86 ~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 86 VARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 4 3445589999999
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.3 Score=41.28 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=86.4
Q ss_pred HHHHHHHHcCCceeecCCCCCCHHHHHhcCC-CceeEEeeec-----CChHHHHHHHHHHHHcCCc--EEEEecCCCCCC
Q 020636 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVY-----KDRNVVAQLVRRAERAGFK--AIALTVDTPRLG 163 (323)
Q Consensus 92 ~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~-~~~~~QLy~~-----~d~~~~~~~~~~a~~~G~~--al~itvd~p~~g 163 (323)
.+...|+++.+|.++.-==..+++.+.++.. +..++|+-.. .+.+.++++.+.+++.|+. +=..+++..-.+
T Consensus 65 ~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~ 144 (281)
T PRK06806 65 LMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDG 144 (281)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCC
Confidence 4456778888998888433346676665543 5678887431 1235678888888888753 333455411111
Q ss_pred chHHHHhhccCCCCccc-c-----ccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec--cCC
Q 020636 164 RREADIKNRFTLPPFLT-L-----KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG--VLT 235 (323)
Q Consensus 164 ~r~~d~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~--i~~ 235 (323)
.. .+...++-|.... . .....+..|+ -.+ .....|.+.++.++++++.+++|+++-| -.+
T Consensus 145 ~~--~~g~s~t~~eea~~f~~~tg~DyLAvaiG~-----~hg-----~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~ 212 (281)
T PRK06806 145 SE--DIEMLLTSTTEAKRFAEETDVDALAVAIGN-----AHG-----MYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS 212 (281)
T ss_pred cc--cccceeCCHHHHHHHHHhhCCCEEEEccCC-----CCC-----CCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC
Confidence 00 0000000000000 0 0000000011 000 0112466789999999999999999998 678
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 020636 236 AEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs 253 (323)
.++...+.++|++.|-+.
T Consensus 213 ~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 213 PEDFKKCIQHGIRKINVA 230 (281)
T ss_pred HHHHHHHHHcCCcEEEEh
Confidence 999999999999999884
|
|
| >PTZ00411 transaldolase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=6.4 Score=37.68 Aligned_cols=95 Identities=14% Similarity=0.234 Sum_probs=63.4
Q ss_pred CHHHHHHHHHh--cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCC-------------CCcchHHHHHHHHHHh
Q 020636 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT 277 (323)
Q Consensus 213 ~~~~i~~i~~~--~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 277 (323)
+|+=++.++.. -++++-+-.+.+...|..|.++|++.|... -||-.| .+.+.+..+.++....
T Consensus 146 T~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 223 (333)
T PTZ00411 146 TWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY 223 (333)
T ss_pred CHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHH
Confidence 45544444322 278888888999999999999999988653 222111 1234556666666554
Q ss_pred c--CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 278 Q--GRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 278 ~--~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
. +--..|....+|+..++.+ .+|||.+-|.-.
T Consensus 224 k~~g~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ 257 (333)
T PTZ00411 224 KKHGYKTIVMGASFRNTGEILE--LAGCDKLTISPK 257 (333)
T ss_pred HHcCCCeEEEecccCCHHHHHH--HHCCCEEeCCHH
Confidence 2 2234566677999999997 389999988743
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.2 Score=41.57 Aligned_cols=45 Identities=27% Similarity=0.455 Sum_probs=39.4
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.++++.+++|++.+++|+++.|. ...++.+++.+.|+.-|=+.
T Consensus 187 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 187 EPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence 5778999999999999999999987 46688999999999888664
|
|
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=91.72 E-value=13 Score=35.95 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCcee-----ecCCCCCCHHH--------HHhcC---CCceeEEeeecCChH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-----LSSWSTSSVEE--------VASTG---PGIRFFQLYVYKDRN 136 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-----vs~~s~~~~ee--------i~~~~---~~~~~~QLy~~~d~~ 136 (323)
|++.+|+--..=..++.-..++....+.|+.++ ++++...+.|| +.++. .+...+-.-...+.+
T Consensus 131 Pli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~ 210 (367)
T cd08205 131 PLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPD 210 (367)
T ss_pred CeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHH
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 137 ~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
.+.+..+.++++|++++++.. +..-+..
T Consensus 211 e~i~~a~~a~~~Gad~vmv~~----------------------------------------------------~~~g~~~ 238 (367)
T cd08205 211 ELRRRADRAVEAGANALLINP----------------------------------------------------NLVGLDA 238 (367)
T ss_pred HHHHHHHHHHHcCCCEEEEec----------------------------------------------------ccccccH
Q ss_pred HHHHHHhcCCCEEEe-------------ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHH--HHHHhcCCC
Q 020636 217 VKWLQTITKLPILVK-------------GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEE--VVKATQGRI 281 (323)
Q Consensus 217 i~~i~~~~~~pv~vK-------------~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~--i~~~~~~~~ 281 (323)
++.+++..++|+... +....--.+.+.-+|+|.+...|.+| .++..+.....+.+ ......-+-
T Consensus 239 ~~~l~~~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~~~~g-k~~~~~~~~~~la~~~~~~~~~iK~ 317 (367)
T cd08205 239 LRALAEDPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFPGPGG-RFPFSREECLAIARACRRPLGGIKP 317 (367)
T ss_pred HHHHHhcCCCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCccccCCCcc-CcCCCHHHHHHHHHHHhCccccCCC
Q ss_pred eEEEecCCCCHHHHHHHHH-cCCCEEEE-ccccccCcc
Q 020636 282 PVFLDGGVRRGTDVFKALA-LGASGIFV-SIMPCQCPL 317 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~-lGAd~V~i-G~~~~~~~~ 317 (323)
..-+.+|=-++..+-..+. +|.|.+.. |..++++|+
T Consensus 318 ~~Pv~sgG~~~~~v~~l~~~~G~dv~~~~GGgi~gHp~ 355 (367)
T cd08205 318 ALPVPSGGMHPGRVPELYRDYGPDVILLAGGGILGHPD 355 (367)
T ss_pred ceeeccCCCCHHHHHHHHHHhCCcEEEEcCchhcCCCC
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.72 E-value=5.5 Score=38.32 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=47.7
Q ss_pred HHHHHHHhc-CCCEEEe---ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc-CCCeEEEecCC
Q 020636 216 DVKWLQTIT-KLPILVK---GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGV 289 (323)
Q Consensus 216 ~i~~i~~~~-~~pv~vK---~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~~pvia~GGI 289 (323)
.+.-+++.. ++|+.+- .+.+.+.++-..+.|+..++++- .-+.+-+.++.+.++ -.+.|++-|+.
T Consensus 103 ~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~r---------Els~~ei~~i~~~~~~veiEvfVhGal 172 (347)
T COG0826 103 LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPR---------ELSLEEIKEIKEQTPDVEIEVFVHGAL 172 (347)
T ss_pred HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCc---------cCCHHHHHHHHHhCCCceEEEEEecch
Confidence 466666666 5888777 35789999999999988887742 346677788887764 35678888864
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=91.67 E-value=3.3 Score=36.28 Aligned_cols=91 Identities=24% Similarity=0.112 Sum_probs=56.6
Q ss_pred CHHHHHHHHHhc-CCCEEEec-cCCHH--HHHHHHHcCCCEEEEcCCCCCCCCCCcch-HHHHHHHHHHhcCCCeEEEe-
Q 020636 213 SWKDVKWLQTIT-KLPILVKG-VLTAE--DARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLD- 286 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~-i~~~e--~a~~~~~~Gad~i~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~~pvia~- 286 (323)
..+.++.+++.. +..+.+-. ++++. +++.+.++|+|.|.++.-. .... .+.+..+.+ . .++++++
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~------~~~~~~~~i~~~~~-~--g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA------DDATIKGAVKAAKK-H--GKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC------CHHHHHHHHHHHHH-c--CCEEEEEe
Confidence 356788888875 33343221 23443 6899999999999985321 1112 234444433 3 5788775
Q ss_pred cCCCCH-HHHHHHHHcCCCEEEEcccc
Q 020636 287 GGVRRG-TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 287 GGI~~~-~di~kal~lGAd~V~iG~~~ 312 (323)
-+..+. +++..+..+|+|.|.+...+
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcCCc
Confidence 355554 77778888999999886543
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.55 E-value=4.6 Score=35.49 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCEE-EeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH
Q 020636 214 WKDVKWLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 276 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~ 276 (323)
...++|+|++++-+.+ +-|..+++.+.++.++||+.|+... ..-+....-+.+..++..
T Consensus 157 m~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGs----avf~a~d~~~vi~~lr~~ 216 (224)
T KOG3111|consen 157 MPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGS----AVFGAADPSDVISLLRNS 216 (224)
T ss_pred HHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecc----eeecCCCHHHHHHHHHHH
Confidence 4579999988865444 7777889999999999999997632 222233344555555543
|
|
| >PRK12309 transaldolase/EF-hand domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=13 Score=36.46 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=61.2
Q ss_pred CHHHHHHHHHh--cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCC-------------CCcchHHHHHHHHHHh
Q 020636 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT 277 (323)
Q Consensus 213 ~~~~i~~i~~~--~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 277 (323)
+|+=++.++.. -++++-+-.+.+.+.|..|.++|++.|... -||-.| ..-|.+..+.++.+..
T Consensus 140 T~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~ 217 (391)
T PRK12309 140 TWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY 217 (391)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHH
Confidence 45444444332 278888888999999999999999888653 232111 1123455666666555
Q ss_pred c---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 278 Q---GRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 278 ~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
. -+..|++ ..+|+..++.+ .+|||.+-|.-
T Consensus 218 ~~~~~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p 250 (391)
T PRK12309 218 KKFGYKTEVMG-ASFRNIGEIIE--LAGCDLLTISP 250 (391)
T ss_pred HhcCCCcEEEe-cccCCHHHHHH--HHCCCeeeCCH
Confidence 2 1344444 56999999997 47999998764
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.3 Score=42.67 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 265 ~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.+++.+.++++.. ++||++- ||.+.+|+.++...|+|++.+..
T Consensus 200 ~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 200 LTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 4567788888776 7899987 78999999999999999999854
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.32 Score=43.99 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 216 DVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.++..++..+.|+++. ||.+.|.|+.+.++|||.|++.|
T Consensus 173 v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 173 VIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 3444444458999999 57999999999999999999966
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=91.18 E-value=11 Score=35.00 Aligned_cols=47 Identities=21% Similarity=0.144 Sum_probs=34.6
Q ss_pred CccCHHHHHHHHHhcCCCEEEecc----CCHHHHHHHHHcCCCEEEEcCCC
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGV----LTAEDARIAVQAGAAGIIVSNHG 256 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i----~~~e~a~~~~~~Gad~i~vs~~g 256 (323)
|....+.++.+++.++.|+-+..= +....+..+.++||+.|.++-.|
T Consensus 177 P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~G 227 (275)
T cd07937 177 PYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISP 227 (275)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 334556788999988877777632 44566788899999999976543
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.3 Score=41.43 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=39.3
Q ss_pred CccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+..|-+.
T Consensus 184 p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 229 (283)
T PRK07998 184 PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIA 229 (283)
T ss_pred CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEEC
Confidence 778899999999999999999987 46788999999999999774
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.6 Score=37.88 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
.+..+.+.++.|+++.. +.+.+.+.|+|+|.+.... ... ..+++..+ ...+....++|..++
T Consensus 48 ~l~~~~~~~~~~l~i~~-----~~~la~~~g~~GvHl~~~~--------~~~---~~~r~~~~--~~~~ig~s~h~~~e~ 109 (196)
T TIGR00693 48 KLQELCRRYGVPFIVND-----RVDLALALGADGVHLGQDD--------LPA---SEARALLG--PDKIIGVSTHNLEEL 109 (196)
T ss_pred HHHHHHHHhCCeEEEEC-----HHHHHHHcCCCEEecCccc--------CCH---HHHHHhcC--CCCEEEEeCCCHHHH
Confidence 45555556678888753 5677889999999774210 111 22222231 224555679999999
Q ss_pred HHHHHcCCCEEEEccccc
Q 020636 296 FKALALGASGIFVSIMPC 313 (323)
Q Consensus 296 ~kal~lGAd~V~iG~~~~ 313 (323)
.++..+|+|.+.+|..|-
T Consensus 110 ~~a~~~g~dyi~~~~v~~ 127 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFP 127 (196)
T ss_pred HHHhHcCCCEEEECCccC
Confidence 999999999999987653
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.3 Score=40.73 Aligned_cols=76 Identities=25% Similarity=0.265 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...++||++|.|-.- ...-..+++.|..+++.+ ++||..-==|-++.++.++.++|||+|.+=-.++..
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe----~~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~ 144 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTE----PKFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSD 144 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE------SCCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGH
T ss_pred HHHHHHHHhcCCCEEEEECC----CCCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCH
Confidence 35578888999999988431 112235788899998888 899999888999999999999999999886555554
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
..
T Consensus 145 ~~ 146 (254)
T PF00218_consen 145 DQ 146 (254)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=90.94 E-value=6.5 Score=37.53 Aligned_cols=86 Identities=10% Similarity=0.166 Sum_probs=61.8
Q ss_pred cCHHH---HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 212 LSWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 212 ~~~~~---i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.++. +...++..++++ +-.+.+.+.+..+.+.|++.+.+... ....+.+|..+.+. ..|||.+-|
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~-~stpfd~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPvilstG 142 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTI-FSSPFDETAVDFLESLDVPAYKIASF-------EITDLPLIRYVAKT---GKPIIMSTG 142 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcE-EEccCCHHHHHHHHHcCCCEEEECCc-------cccCHHHHHHHHhc---CCcEEEECC
Confidence 44444 444466667765 34567888999999999999988431 13456777777653 689999999
Q ss_pred CCCHHHHHHHHH----cCCCEEEE
Q 020636 289 VRRGTDVFKALA----LGASGIFV 308 (323)
Q Consensus 289 I~~~~di~kal~----lGAd~V~i 308 (323)
..+.+++..|+. .|..-|.+
T Consensus 143 ~~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 143 IATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred CCCHHHHHHHHHHHHHCCCCcEEE
Confidence 999999988875 47755555
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=90.91 E-value=3.4 Score=33.99 Aligned_cols=84 Identities=24% Similarity=0.220 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCCEEEecc-CCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh----cCCCeEEEecCC
Q 020636 216 DVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGGV 289 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i-~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~~pvia~GGI 289 (323)
.+..+-+..+.-|+--+. .++++ ++.+.+.++|.|.+|..-+ .+.+.++++.+.+ ..+++|++ ||.
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~-------~~~~~~~~~~~~L~~~g~~~i~viv-GG~ 92 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAG-------GHLTLVPALRKELDKLGRPDILVVV-GGV 92 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchh-------hhHHHHHHHHHHHHhcCCCCCEEEE-eCC
Confidence 344444445665655555 45555 6888899999999986432 2233334433333 12466666 776
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 020636 290 RRGTDVFKALALGASGIF 307 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~ 307 (323)
--.+|..+..++|.|.+.
T Consensus 93 ~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 93 IPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CChHhHHHHHHCCCCEEE
Confidence 677888888899988764
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.75 E-value=3 Score=40.24 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=61.4
Q ss_pred CHHHHHHHHHhc-CCCEEEecc------CCHHHHH-HHHHcCCCEEEEcCCCCCC--CCCCcchH----HHHHHHHHHhc
Q 020636 213 SWKDVKWLQTIT-KLPILVKGV------LTAEDAR-IAVQAGAAGIIVSNHGARQ--LDYVPATI----MALEEVVKATQ 278 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~i------~~~e~a~-~~~~~Gad~i~vs~~gg~~--~~~~~~~~----~~l~~i~~~~~ 278 (323)
..+.++.+|+.. +.|+++-.- .+.+++. .+...++|++.+.-.-... ...+...+ +.+.++++.+
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~- 185 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL- 185 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-
Confidence 345677788877 688877421 2355544 4446899999885321111 11122233 5666777766
Q ss_pred CCCeEEE--ecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 279 GRIPVFL--DGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 279 ~~~pvia--~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
++||++ .|.-.+.+++.++...|+|++.++.
T Consensus 186 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 186 -PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred -CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 789997 5555678888888889999999955
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=90.74 E-value=14 Score=34.34 Aligned_cols=187 Identities=18% Similarity=0.087 Sum_probs=101.7
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHc-CCcee--ec---CCCCCCHHHHHh-------cCC--CceeEEeeecCChH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAA-GTIMT--LS---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRN 136 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~-G~~~~--vs---~~s~~~~eei~~-------~~~--~~~~~QLy~~~d~~ 136 (323)
.|..+.|+.-.+-.+.++-..+.+-..+. |+..+ .+ ++.+.+.||-.+ ... -+.+++.- ..+-+
T Consensus 5 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~ 83 (288)
T cd00954 5 IAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLK 83 (288)
T ss_pred eeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHH
Confidence 46677776544334444545677777777 76443 22 233455555322 222 24455553 23556
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 137 ~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
...++.+.++++|++++.+.- |... + + +.+-..+.
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~~--P~y~------------~--------------~-----------------~~~~i~~~ 118 (288)
T cd00954 84 ESQELAKHAEELGYDAISAIT--PFYY------------K--------------F-----------------SFEEIKDY 118 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEeC--CCCC------------C--------------C-----------------CHHHHHHH
Confidence 667788889999999998652 3310 0 0 00011334
Q ss_pred HHHHHHhc-CCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 217 VKWLQTIT-KLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 217 i~~i~~~~-~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
.+.+.+.+ ++||++=.+ .+++..+++.+.. ..+-+=. .. .++..+.++.+..+++..|+. |.
T Consensus 119 ~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~p-nivgiK~-------s~-~d~~~~~~~~~~~~~~~~v~~-G~ 188 (288)
T cd00954 119 YREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIP-NVIGVKF-------TA-TDLYDLERIRAASPEDKLVLN-GF 188 (288)
T ss_pred HHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCC-CEEEEEe-------CC-CCHHHHHHHHHhCCCCcEEEE-ec
Confidence 55666777 788887632 5677777777532 2222211 11 123444555555543454443 32
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
..-+...+.+|+++.+-|..-+....
T Consensus 189 ---d~~~~~~~~~G~~G~i~~~~n~~P~~ 214 (288)
T cd00954 189 ---DEMLLSALALGADGAIGSTYNVNGKR 214 (288)
T ss_pred ---hHHHHHHHHcCCCEEEeChhhhCHHH
Confidence 23466788899999987764433333
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants | Back alignment and domain information |
|---|
Probab=90.72 E-value=1.2 Score=41.57 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh-----cCCCeEEE-ecCCCCHHHHHHHHHcCCCEEE
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~pvia-~GGI~~~~di~kal~lGAd~V~ 307 (323)
++|..+.+.|+..|++|-++...-.-..|++-++..+..++ +.++.+|+ +|-+|+.-|+...+..|||+|.
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~ 222 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVN 222 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEE
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhc
Confidence 45788899999999998765322112234444455555443 23566666 7789999999999999999984
|
In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=90.71 E-value=13 Score=36.43 Aligned_cols=158 Identities=14% Similarity=0.115 Sum_probs=82.4
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCcee---ecCCCC-----------CC---HHHH----HhcCCCceeEEe
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWST-----------SS---VEEV----ASTGPGIRFFQL 129 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~---vs~~s~-----------~~---~eei----~~~~~~~~~~QL 129 (323)
..|++.|=|+.. .++.=..+++.+.+.|+.++ +|.-.. .. +.+| .+....|.|+.|
T Consensus 113 ~~pvIaSi~~~~---s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 113 DRILIASIMEEY---NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred CCcEEEEccCCC---CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 358888855432 33333478888888886444 321110 11 2333 222335789998
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc--cchhhHHHHhhc
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA--NDSGLAAYVAGQ 207 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 207 (323)
-+ +...+.++++.+++.|+++++++ ++-..+. .-|+...-..| . .. +....+ .+..+. .
T Consensus 190 sP--n~t~i~~ia~aa~~~Gadgi~li-NT~~~~~-~ID~~t~~p~~---~------~~-~~~~~GGlSG~alk-p---- 250 (385)
T PLN02495 190 TP--NITDITQPARVALKSGCEGVAAI-NTIMSVM-GINLDTLRPEP---C------VE-GYSTPGGYSSKAVR-P---- 250 (385)
T ss_pred CC--ChhhHHHHHHHHHHhCCCEEEEe-cccCccc-ccccccCcccc---c------cC-CCCCCCCccchhhh-H----
Confidence 64 44447788888999999999864 3221100 00111100000 0 00 000000 011110 0
Q ss_pred cCCccCHHHHHHHHHhc------CCCEE-EeccCCHHHHHHHHHcCCCEEEEcC
Q 020636 208 IDRSLSWKDVKWLQTIT------KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 208 ~~~~~~~~~i~~i~~~~------~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.....+.++++.. ++||+ +.||.+.+||...+.+||+.|-|..
T Consensus 251 ----iAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~T 300 (385)
T PLN02495 251 ----IALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCT 300 (385)
T ss_pred ----HHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEee
Confidence 1223344444443 36654 5578999999999999999998743
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=90.66 E-value=1.9 Score=40.19 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=86.0
Q ss_pred HHHHHHHHcC-CceeecCCCCCCHHHHHhcCC-CceeEEeeecC-----ChHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Q 020636 92 ATARAASAAG-TIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYK-----DRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (323)
Q Consensus 92 ~~a~aa~~~G-~~~~vs~~s~~~~eei~~~~~-~~~~~QLy~~~-----d~~~~~~~~~~a~~~G~~al~itvd~p~~g~ 164 (323)
.+...|.++. +|.++.---..+++.+.++.. +..++|+-... +.+.+.++++.+++.|+. +-.-+++ +.|.
T Consensus 64 ~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~-Ve~ElG~-~gg~ 141 (282)
T TIGR01859 64 MVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVS-VEAELGT-LGGI 141 (282)
T ss_pred HHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCE-EEEeeCC-CcCc
Confidence 4455677888 898888532345666665543 44577774321 245678888888888873 4444444 2231
Q ss_pred hHHHHhhc----cCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec--cCCHHH
Q 020636 165 READIKNR----FTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG--VLTAED 238 (323)
Q Consensus 165 r~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~--i~~~e~ 238 (323)
- |...+ ++-|... ..+.. ..+...-+-.-|-. +......|.+.++.++++++.+++|++.-| -.+.++
T Consensus 142 e--d~~~g~~~~~t~~eea--~~f~~-~tgvD~Lavs~Gt~-hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~ 215 (282)
T TIGR01859 142 E--DGVDEKEAELADPDEA--EQFVK-ETGVDYLAAAIGTS-HGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQ 215 (282)
T ss_pred c--ccccccccccCCHHHH--HHHHH-HHCcCEEeeccCcc-ccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 1 10000 0000000 00000 00000000000000 000112466889999999999999999998 578899
Q ss_pred HHHHHHcCCCEEEEcC
Q 020636 239 ARIAVQAGAAGIIVSN 254 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~ 254 (323)
.+.+.++|++.|-+..
T Consensus 216 i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 216 IKKAIKLGIAKINIDT 231 (282)
T ss_pred HHHHHHcCCCEEEECc
Confidence 9999999999998854
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.43 Score=41.99 Aligned_cols=49 Identities=29% Similarity=0.419 Sum_probs=41.7
Q ss_pred cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 264 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.++.+++..+.... .-||+..|||+-.+|+.-++.+|+++|.+||++..
T Consensus 167 G~~~E~l~~~~~~s--~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~ 215 (229)
T COG1411 167 GPDYELLTKVLELS--EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE 215 (229)
T ss_pred CCCHHHHHHHHHhc--cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc
Confidence 35677777776654 67999999999999999999999999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 323 | ||||
| 1al7_A | 359 | Three-Dimensional Structures Of Glycolate Oxidase W | 1e-154 | ||
| 1gox_A | 370 | Refined Structure Of Spinach Glycolate Oxidase At 2 | 1e-154 | ||
| 1gyl_A | 369 | Involvement Of Tyr24 And Trp108 In Substrate Bindin | 1e-154 | ||
| 2nzl_A | 392 | Crystal Structure Of Human Hydroxyacid Oxidase 1 Le | 9e-90 | ||
| 2w0u_A | 370 | Crystal Structure Of Human Glycolate Oxidase In Com | 1e-89 | ||
| 2rdt_A | 387 | Crystal Structure Of Human Glycolate Oxidase (Go) I | 1e-89 | ||
| 2a7n_A | 380 | Crystal Structure Of The G81a Mutant Of The Active | 3e-63 | ||
| 1huv_A | 380 | Crystal Structure Of A Soluble Mutant Of The Membra | 9e-63 | ||
| 1tb3_A | 352 | Crystal Structure Analysis Of Recombinant Rat Kidne | 9e-62 | ||
| 3sgz_A | 352 | High Resolution Crystal Structure Of Rat Long Chain | 2e-59 | ||
| 1qcw_A | 410 | Flavocytochrome B2, Arg289lys Mutant Length = 410 | 7e-57 | ||
| 1ltd_A | 506 | The 2.6 Angstroms Refined Structure Of The Escheric | 4e-56 | ||
| 1kbj_A | 412 | Crystallographic Study Of The Recombinant Flavin-Bi | 5e-56 | ||
| 1fcb_A | 511 | Molecular Structure Of Flavocytochrome B2 At 2.4 An | 5e-56 | ||
| 1ldc_A | 511 | X-Ray Structure Of Two Complexes Of The Y143f Flavo | 2e-55 | ||
| 1sze_A | 511 | L230a Mutant Flavocytochrome B2 With Benzoylformate | 2e-55 | ||
| 2oz0_A | 511 | Mechanistic And Structural Studies Of H373q Flavocy | 5e-55 | ||
| 1szf_A | 511 | A198g:l230a Mutant Flavocytochrome B2 With Pyruvate | 7e-55 | ||
| 2cdh_0 | 226 | Architecture Of The Thermomyces Lanuginosus Fungal | 2e-43 | ||
| 2cdh_0 | 226 | Architecture Of The Thermomyces Lanuginosus Fungal | 4e-38 | ||
| 2j6x_A | 374 | The Crystal Structure Of Lactate Oxidase Length = 3 | 1e-39 | ||
| 2nli_A | 368 | Crystal Structure Of The Complex Between L-Lactate | 2e-39 | ||
| 2du2_A | 374 | Crystal Structure Analysis Of The L-Lactate Oxidase | 2e-39 |
| >pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 | Back alignment and structure |
|
| >pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 | Back alignment and structure |
|
| >pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 | Back alignment and structure |
|
| >pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 | Back alignment and structure |
|
| >pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 | Back alignment and structure |
|
| >pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 | Back alignment and structure |
|
| >pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 | Back alignment and structure |
|
| >pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 | Back alignment and structure |
|
| >pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 | Back alignment and structure |
|
| >pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 | Back alignment and structure |
|
| >pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 | Back alignment and structure |
|
| >pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 | Back alignment and structure |
|
| >pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 | Back alignment and structure |
|
| >pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 | Back alignment and structure |
|
| >pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 | Back alignment and structure |
|
| >pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 | Back alignment and structure |
|
| >pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 | Back alignment and structure |
|
| >pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 | Back alignment and structure |
|
| >pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 | Back alignment and structure |
|
| >pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 | Back alignment and structure |
|
| >pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 | Back alignment and structure |
|
| >pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 | Back alignment and structure |
|
| >pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 | Back alignment and structure |
|---|
Score = 549 bits (1418), Expect = 0.0
Identities = 282/306 (92%), Positives = 297/306 (97%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 302
Query: 303 ASGIFV 308
A+G+F+
Sbjct: 303 AAGVFI 308
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 | Back alignment and structure |
|---|
Score = 524 bits (1353), Expect = 0.0
Identities = 177/312 (56%), Positives = 229/312 (73%), Gaps = 4/312 (1%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ + + +YE AK LPK ++DYY SGA D+ TL +N AFSR PR+L +V++ D
Sbjct: 24 LPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETD 83
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST 120
++T+VLG ++SMPI + TAMQ+MAH +GE AT RA + GT M LSSW+TSS+EEVA
Sbjct: 84 LSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEA 143
Query: 121 GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179
GP +R+ QLY+YKDR V +LVR+AE+ G+KAI +TVDTP LG R D++NRF LPP L
Sbjct: 144 GPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQL 203
Query: 180 TLKNFQGLDLGKMDEAN---DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236
+KNF+ L E N DSGLAAYVA ID S+SW+D+KWL+ +T LPI+ KG+L
Sbjct: 204 RMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRG 263
Query: 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296
+DAR AV+ G GI+VSNHGARQLD VPATI L E+V+A +G++ VFLDGGVR+GTDV
Sbjct: 264 DDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVL 323
Query: 297 KALALGASGIFV 308
KALALGA +FV
Sbjct: 324 KALALGAKAVFV 335
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 | Back alignment and structure |
|---|
Score = 509 bits (1314), Expect = 0.0
Identities = 134/306 (43%), Positives = 191/306 (62%), Gaps = 8/306 (2%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP- 122
T+ G +IS PI I+PTA +A P+GE +TARAA A +SS+++ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L +
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
+ L + + S W D+ LQ+IT+LPI++KG+LT EDA +A
Sbjct: 182 ALRALK-------EEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
++ GI+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 303 ASGIFV 308
A IF+
Sbjct: 295 ARCIFL 300
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 | Back alignment and structure |
|---|
Score = 507 bits (1309), Expect = 0.0
Identities = 132/306 (43%), Positives = 195/306 (63%), Gaps = 3/306 (0%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQ 63
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
VLG + SMP++I PT + P+G+ A ARAA+ AG LS+ S S+E++A
Sbjct: 64 AEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCD 123
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G +FQLYV R + +V +A G+ + LT D G RE D+ NRF +PPFLTLK
Sbjct: 124 GDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLK 182
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+G+DLGKMD+AN AA ++ Q+D S +W+ ++WL+ + +LVKG+L+AEDA
Sbjct: 183 NFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
+ GA G+I+SNHG RQLD + + L + V PV +D G RRG+D+ KALALG
Sbjct: 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAK--TGKPVLIDSGFRRGSDIVKALALG 300
Query: 303 ASGIFV 308
A + +
Sbjct: 301 AEAVLL 306
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 | Back alignment and structure |
|---|
Score = 506 bits (1306), Expect = 0.0
Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 7/307 (2%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
++ N + E A + +P F+Y A + D+WT + N A+ L PR+ DV D +
Sbjct: 12 DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTS 71
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T +LG KI P ++AP A +AH E TARA S GTIM++S++S ++ EE++
Sbjct: 72 TEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLN 131
Query: 123 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181
G R+FQ+Y+ KD ++ A+ G AI LT D+ G R+ D+KN+F P + +
Sbjct: 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPI 191
Query: 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241
+ + + G + +S +D++ + + LP+ VKG+ EDA +
Sbjct: 192 VQR------YLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADM 245
Query: 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301
A++ GA+GI VSNHGARQL P + L + + R+P+ D GVRRG V KALA
Sbjct: 246 AIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALAS 305
Query: 302 GASGIFV 308
GA + +
Sbjct: 306 GADVVAL 312
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 | Back alignment and structure |
|---|
Score = 485 bits (1251), Expect = e-172
Identities = 119/319 (37%), Positives = 186/319 (58%), Gaps = 17/319 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHP---EGEYATARAASAAGTIMTLSSWSTSSVEEV 117
++T +LG + +P ++ TA+ K+ +P E + A +S+ ++ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 118 ASTGPG---IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
P I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 234
+ + G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 299 NTKAGPKAMKKT------NVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 352
Query: 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGV 289
ED A + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGV
Sbjct: 353 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412
Query: 290 RRGTDVFKALALGASGIFV 308
RRGTDV KAL LGA G+ +
Sbjct: 413 RRGTDVLKALCLGAKGVGL 431
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 | Back alignment and structure |
|---|
Score = 237 bits (605), Expect = 3e-76
Identities = 53/328 (16%), Positives = 102/328 (31%), Gaps = 63/328 (19%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDM 61
+ ++ + + + + D+ A D + N+F I L D+++ID+
Sbjct: 21 MASMTGGQQMGRGSMTNRKDDHI-KYALDY---RSPYNSFDDIELIHHSLPDYDLAEIDL 76
Query: 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG 121
+T G P I E A+ A G + S
Sbjct: 77 STHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGS------------- 123
Query: 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA-DIKNRFTLPPFLT 180
K+ + + V+++ A + +D P +A L +
Sbjct: 124 ------YSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHIN 177
Query: 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD-VKWLQTITKLPILVKGV---LTA 236
L + G+ + SWK + +LP ++K V +
Sbjct: 178 LMQELLMPEGERE-----------------FRSWKKHLSDYAKKLQLPFILKEVGFGMDV 220
Query: 237 EDARIAVQAGAAGIIVSNHGARQLDYVPA---------------TIMALEEVVKATQGRI 281
+ + A+ G + +S G Y+ T L + ++
Sbjct: 221 KTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLN-AQPLMDKV 279
Query: 282 PVFLDGGVRRGTDVFKALALGASGIFVS 309
+ GG+R D+ KAL LGA + +S
Sbjct: 280 EILASGGIRHPLDIIKALVLGAKAVGLS 307
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 1e-65
Identities = 56/298 (18%), Positives = 103/298 (34%), Gaps = 57/298 (19%)
Query: 35 TLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEY 91
Q+ I F L + + ++D++T + S PI I T E
Sbjct: 17 IGQKRETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINK 76
Query: 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151
+ ARAAS AG + + S ++ + ++VR+ G
Sbjct: 77 SLARAASQAGIPLAVGSQMSALKDPSERLS-----------------YEIVRKENPNGLI 119
Query: 152 AIALTVDTPRLGRREA-DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210
L + +EA ++ L + L + E G
Sbjct: 120 FANLGSEATAAQAKEAVEMIGANALQ----------IHLNVIQEIVMPE------GDRSF 163
Query: 211 SLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVP--- 264
S + K ++ + + +P++VK V ++ A +AGAA + + +G +
Sbjct: 164 SGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLR 223
Query: 265 -------------ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309
+T +L E+ + GG++ DV KA+ALGAS ++
Sbjct: 224 RQRQISFFNSWGISTAASLAEIRSE-FPASTMIASGGLQDALDVAKAIALGASCTGMA 280
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 | Back alignment and structure |
|---|
Score = 183 bits (465), Expect = 3e-55
Identities = 45/315 (14%), Positives = 94/315 (29%), Gaps = 57/315 (18%)
Query: 24 DYYASGAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TA 80
++ A + + + ++ + I S+I+ T +IS+P+M+ T
Sbjct: 10 EHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTG 69
Query: 81 MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 140
+ A A G M + S + + A
Sbjct: 70 GRNELG-RINKIIAEVAEKFGIPMGVGSQRVAIEKAEARES-----------------FA 111
Query: 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200
+VR+ L + G + ++ + + + +
Sbjct: 112 IVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIA---------VHLNPAQEV 162
Query: 201 AAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHG- 256
+ + + ++ + +PI+VK ++ E A++ G S G
Sbjct: 163 FQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGG 222
Query: 257 ----------------------ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294
LD+ T ++ EV + + GG+R G D
Sbjct: 223 TNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPD-SFLVGSGGIRSGLD 281
Query: 295 VFKALALGASGIFVS 309
KA+ALGA ++
Sbjct: 282 AAKAIALGADIAGMA 296
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-40
Identities = 61/304 (20%), Positives = 92/304 (30%), Gaps = 55/304 (18%)
Query: 29 GAEDQWTLQENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86
E + Q+ R + L + +S++D+ T LG + P +I +
Sbjct: 14 CLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENG 73
Query: 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAE 146
A A AA A G M L S A +R V ++A L
Sbjct: 74 ERINLALAEAAEALGVGMMLGSGRILLERPEALRSFRVR----KVAPKALLIANL----- 124
Query: 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206
L R ++ L + + EA G +
Sbjct: 125 ----GLAQLRRYGRDDLLRLVEMLEADALA----------FHVNPLQEAVQRGDTDFR-- 168
Query: 207 QIDRSLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYV 263
+ P++VK V L+ E A A + V+ G V
Sbjct: 169 ------GLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARV 222
Query: 264 PA------------------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 305
T A+ E V+ +P+ GGV GTD KALALGA
Sbjct: 223 EEWVRFGEVRHPELCEIGIPTARAILE-VREVLPHLPLVASGGVYTGTDGAKALALGADL 281
Query: 306 IFVS 309
+ V+
Sbjct: 282 LAVA 285
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 49/271 (18%), Positives = 85/271 (31%), Gaps = 35/271 (12%)
Query: 54 IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113
+D + +K +P M P +A E+ ++
Sbjct: 50 RSSKDVDTTWHIDAYKFDLPFMNHP--SDALA--SPEFVIEMGKQGGLGVINAEG----L 101
Query: 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRR-------AERAGFKAIALTVDTPRLGRRE 166
A I + A + + IA D+ +
Sbjct: 102 WGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVR 161
Query: 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKL 226
+N + P + G DL + A +V + ++K +
Sbjct: 162 VSPQNVREIAPIVIK---AGADLLVIQGTL--ISAEHVNTGGE----ALNLKEFIGSLDV 212
Query: 227 PILVKGVLTAEDARIAVQAGAAGIIV-----SNHGARQLDYVPAT-IM----ALEEVVKA 276
P++ GV A ++ GA GIIV +N A ++ AT I A + +
Sbjct: 213 PVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDE 272
Query: 277 TQGR-IPVFLDGGVRRGTDVFKALALGASGI 306
T GR + + DG + DV KA+A GA +
Sbjct: 273 TGGRYVHIIADGSIENSGDVVKAIACGADAV 303
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-06
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYV 263
+K +++ + ++V V+T E + ++ GA GI IV+ G Q
Sbjct: 176 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ---- 231
Query: 264 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
I A+E+ IP+ DGG+R D+ KALA+GAS
Sbjct: 232 ---ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGAS 270
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 7e-06
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291
+ +D + GA I + G D + L + + V +G
Sbjct: 135 DCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAEGRYNS 192
Query: 292 GTDVFKALALGASGIFV 308
+A+ GA + V
Sbjct: 193 PALAAEAIRYGAWAVTV 209
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 25/109 (22%)
Query: 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDYV 263
+K +++ + ++V V+T E + ++ GA GI IV+ G Q
Sbjct: 137 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ---- 192
Query: 264 PATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFVSIM 311
I A+E+ IP+ DGG+R D+ KALA+GAS S+M
Sbjct: 193 ---ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGAS----SVM 234
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 28/114 (24%)
Query: 206 GQIDRSLSWKDVKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------I 251
QI V ++ Q L ++ V+TA A+ + AG G+
Sbjct: 282 YQIAM------VHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQE 335
Query: 252 VSNHGARQLDYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
V G Q A+ +V + + +P+ DGG++ V KALALGAS
Sbjct: 336 VMACGRPQ-------GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGAS 382
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 5e-05
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 276
++ ++ +L+ + T ++ +A QAG + + G + +
Sbjct: 124 IRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYS-RQEAGPDVALIEAL 182
Query: 277 TQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308
+ I V +G + + K LG +GI V
Sbjct: 183 CKAGIAVIAEGKIHSPEEAKKINDLGVAGIVV 214
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
+K + L ++ ++T E A + GA + IV+ G Q
Sbjct: 185 IKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQ--- 241
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
I A+ +V +A I + DGG+R DV KA+A GA
Sbjct: 242 ----ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGAD 280
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Length = 369 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Query: 233 VLTAEDARIAVQAGAAGIIVSNHGA----------RQLDYVPATIMAL-EEVVKATQGRI 281
T E+AR AGA +I A + D +++L +V +A I
Sbjct: 152 ATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--DI 209
Query: 282 PVFLDGGVRRGTDVFKALALGASGI 306
PV GG+ RG + LA GA
Sbjct: 210 PVVAAGGIMRGGQIAAVLAAGADAA 234
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 22/103 (21%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
++ + LP++ V T E ++AGA + +V+ G Q
Sbjct: 269 LEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ--- 325
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
+ A+ E + + +P+ DGG+R D+ KALA GA
Sbjct: 326 ----LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAE 364
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 22/103 (21%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
VK + L I+ V TAE + ++AGA + +V+ G Q
Sbjct: 288 VKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQ--- 344
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
+ A+ + + IPV DGG++ D+ KALA GA
Sbjct: 345 ----LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAH 383
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 26/110 (23%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
++ L I+ V TAE AR ++AG + + IV+ G Q
Sbjct: 140 IRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ--- 196
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGASGIFVSIM 311
I A+ + IPV DGG+R D+ KA+A GAS +M
Sbjct: 197 ----ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGAS----CVM 238
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 2e-04
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-----ARQLDYVPATIMALE 271
V +++T ++ + T E+A+ A + G I + HG QL Y L+
Sbjct: 110 VSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQND-FQFLK 168
Query: 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308
+V+++ V +G V + + LG V
Sbjct: 169 DVLQSVD--AKVIAEGNVITPDMYKRVMDLGVHCSVV 203
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 22/103 (21%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
+ + ++ + TAE AR AG + +V+ G Q
Sbjct: 265 IAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQ--- 321
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
+ A+ + + + DGG++ D+ KALA G +
Sbjct: 322 ----VTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGN 360
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 22/103 (21%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGAAGI-------------IVSNHGARQLDY 262
++ L I+ V TAE AR ++AG + + IV+ G Q
Sbjct: 263 IRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQ--- 319
Query: 263 VPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
I A+ + IPV DGG+R D+ KA+A GAS
Sbjct: 320 ----ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGAS 358
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 2/81 (2%)
Query: 228 ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287
+ + T + Q G I + G +A+ + V +G
Sbjct: 131 LAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHAG--CRVIAEG 188
Query: 288 GVRRGTDVFKALALGASGIFV 308
A+ GA + V
Sbjct: 189 RYNTPALAANAIEHGAWAVTV 209
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 25/122 (20%)
Query: 205 AGQIDRSLSWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGI------------ 250
Q + W++ K+ + ++ E R AGA I
Sbjct: 268 EWQKIT------IGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICIT 321
Query: 251 -IVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309
G Q V + + + T IPV DGG+ + ALA+GA
Sbjct: 322 REQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGAD----F 377
Query: 310 IM 311
IM
Sbjct: 378 IM 379
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Length = 311 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 24/131 (18%), Positives = 36/131 (27%), Gaps = 33/131 (25%)
Query: 207 QIDRSLSWKDVKWLQTITKLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGA- 257
D + K +K + T P+ VK L A I Q + N
Sbjct: 140 AYDFEATEKLLKEVFTFFTKPLGVK--LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGN 197
Query: 258 --------RQLDYVPATIM-----------ALE---EVVKATQGRIPVFLDGGVRRGTDV 295
+ P AL + I + GG+ G D
Sbjct: 198 GLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDA 257
Query: 296 FKALALGASGI 306
F+ L GA+ +
Sbjct: 258 FEHLLCGATML 268
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 217 VKWL-QTITKLPILVKGVLTAEDARIAVQAGA----AGI---------IVSNHGARQLDY 262
++ + + + + ++ V T E R AGA GI I + G
Sbjct: 140 IQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFG------ 193
Query: 263 VPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304
+ AL KA P+ DGG+R DV K++ GA+
Sbjct: 194 TGGWQLAALRWCAKAA--SKPIIADGGIRTNGDVAKSIRFGAT 234
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 19/100 (19%)
Query: 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAA--GI---------IVSNHGARQLDYVPA 265
+K ++ +V + + A A GI IV+ G Q
Sbjct: 260 MKEMRQKVDADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQ------ 313
Query: 266 TIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGAS 304
I A+ V Q + V DGG+R D+ KA+A GA
Sbjct: 314 -ITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGAD 352
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Length = 328 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 233 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289
A A + G + + G D +P ++ L R+P+ GG
Sbjct: 125 CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVL-LPAAANRL--RVPIIASGGF 181
Query: 290 RRGTDVFKALALGASGIFV 308
G + ALALGA I +
Sbjct: 182 ADGRGLVAALALGADAINM 200
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 100.0 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 100.0 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 100.0 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 100.0 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 100.0 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 100.0 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 100.0 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 100.0 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 100.0 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 100.0 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 100.0 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 100.0 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.97 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 99.97 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.95 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.9 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.9 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.89 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.88 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.88 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.88 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.88 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.86 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.86 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.83 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.83 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.83 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.8 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.8 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.78 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.78 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.78 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.77 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.76 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.76 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.76 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.76 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.75 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.74 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.74 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.73 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 99.71 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.7 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.68 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.66 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.63 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 99.63 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 99.63 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 99.62 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.62 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 99.62 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 99.57 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 99.56 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 99.55 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.53 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 99.5 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 99.49 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.47 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 99.45 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.44 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.44 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.44 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.42 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 99.41 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.41 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 99.39 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.24 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.22 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 99.2 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.18 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.1 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.1 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 99.07 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 99.06 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.05 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 99.05 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.03 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 99.0 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.95 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.94 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.93 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.86 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.85 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.85 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.84 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.83 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.82 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.81 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.78 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.77 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 98.77 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.76 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.76 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.72 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.72 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.71 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 98.69 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.69 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.68 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.68 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.65 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.65 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.65 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.64 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 98.64 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.64 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.63 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.63 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 98.6 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.58 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 98.51 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 98.51 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.5 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.5 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.5 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.49 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.49 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.49 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.48 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 98.46 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.42 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 98.42 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.4 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.38 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 98.36 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 98.35 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 98.34 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 98.3 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 98.3 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 98.29 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.29 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.27 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 98.22 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 98.2 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 98.2 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 98.17 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.17 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 98.17 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.16 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.16 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.14 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.06 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 98.06 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.06 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.02 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 98.01 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 98.0 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.99 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.99 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 97.98 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.97 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.97 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.97 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.96 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.91 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 97.86 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.86 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 97.85 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 97.79 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.79 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 97.75 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.73 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.72 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.7 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 97.68 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.67 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 97.64 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 97.63 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 97.63 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.62 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 97.58 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 97.58 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 97.57 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 97.54 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 97.52 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 97.5 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 97.49 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 97.47 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 97.46 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 97.44 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 97.44 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 97.44 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 97.43 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.4 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 97.38 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.38 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 97.36 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 97.29 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.29 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.27 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 97.22 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 97.22 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 97.18 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.17 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 97.15 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.15 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 97.13 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 97.12 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 97.1 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.97 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.93 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 96.88 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 96.86 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 96.84 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 96.81 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.79 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 96.79 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.78 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 96.75 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 96.71 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 96.71 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 96.68 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 96.64 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.62 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.6 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 96.55 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 96.54 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 96.53 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 96.5 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 96.5 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 96.46 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 96.45 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 96.44 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.42 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 96.41 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.35 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 96.33 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 96.26 | |
| 1vpx_A | 230 | Protein (transaldolase (EC 2.2.1.2)); TM0295, stru | 96.26 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 96.22 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 96.18 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 96.18 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 96.08 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 96.06 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 96.05 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.05 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 96.04 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 96.0 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 95.95 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 95.95 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 95.92 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 95.92 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 95.91 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 95.91 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 95.91 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 95.9 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 95.89 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 95.88 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 95.88 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 95.85 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 95.83 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 95.8 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 95.8 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 95.78 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 95.78 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 95.78 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 95.77 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 95.75 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 95.74 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 95.74 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 95.72 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 95.7 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 95.69 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 95.68 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 95.68 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 95.66 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 95.66 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 95.65 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 95.63 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 95.63 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.63 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 95.6 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 95.6 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.59 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 95.57 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 95.56 | |
| 1l6w_A | 220 | Fructose-6-phosphate aldolase 1; alpha-beta barrel | 95.56 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 95.55 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 95.55 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 95.54 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 95.53 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 95.52 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 95.52 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 95.51 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.5 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 95.49 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 95.47 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 95.45 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 95.42 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 95.41 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 95.38 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 95.38 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 95.36 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 95.36 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 95.36 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 95.33 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 95.31 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 95.3 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 95.3 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 95.29 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 95.29 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 95.27 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 95.25 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 95.25 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 95.25 | |
| 1wx0_A | 223 | Transaldolase; structural genomics, riken structur | 95.22 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 95.21 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 95.2 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 95.2 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 95.15 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 95.15 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 95.12 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 95.11 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 95.11 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 95.11 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 95.1 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 95.08 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 95.07 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 95.05 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 95.05 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 95.03 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 95.01 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 95.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 95.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 95.0 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 94.99 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 94.9 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 94.89 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 94.89 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 94.87 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 94.85 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 94.78 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 94.77 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 94.75 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 94.71 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 94.64 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 94.57 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 94.56 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 94.54 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 94.53 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 94.53 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 94.52 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 94.49 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 94.48 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 94.48 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 94.46 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 94.46 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 94.44 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 94.41 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 94.4 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 94.38 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 94.35 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 94.35 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 94.33 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 94.32 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 94.3 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 94.3 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 94.25 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 94.21 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 94.2 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 94.18 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 94.12 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 94.11 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 94.11 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 94.1 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 94.09 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 94.05 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.05 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 94.02 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 94.01 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 94.01 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 93.99 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 93.98 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 93.98 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 93.94 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 93.93 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 93.92 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 93.9 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 93.9 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 93.89 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 93.89 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 93.85 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 93.84 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 93.84 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 93.83 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 93.76 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 93.74 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 93.73 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 93.72 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 93.7 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.7 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 93.59 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 93.57 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.56 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 93.55 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 93.54 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 93.47 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 93.34 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 93.34 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 93.32 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 93.31 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 93.31 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 93.27 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 93.27 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 93.2 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 93.16 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 93.13 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 93.08 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 93.04 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 93.02 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 93.0 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 92.98 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 92.9 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 92.73 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 92.69 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 92.68 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 92.65 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 92.64 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 92.63 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 92.62 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 92.58 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 92.44 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 92.42 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 92.42 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 92.4 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 92.3 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 92.3 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 92.18 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 92.08 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 92.01 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 92.0 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 91.99 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 91.97 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 91.95 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 91.94 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 91.89 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 91.82 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 91.82 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 91.79 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 91.66 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 91.64 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 91.58 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 91.56 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 91.55 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 91.54 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 91.48 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 91.45 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 91.35 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 91.34 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 91.29 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 91.2 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 91.2 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 91.2 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 91.08 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 91.07 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 90.99 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 90.96 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 90.95 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 90.85 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 90.82 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 90.78 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 90.74 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 90.6 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 90.5 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 90.45 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 90.44 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 90.38 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 90.37 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 90.23 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 90.18 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 90.14 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 90.14 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 90.01 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 89.97 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 89.92 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 89.9 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 89.79 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 89.6 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 89.52 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 89.48 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 89.47 | |
| 2i1o_A | 398 | Nicotinate phosphoribosyltransferase; ZIN ION, zin | 89.37 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 89.32 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 89.3 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 89.21 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 89.1 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 88.99 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 88.9 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 88.89 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 88.85 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 88.83 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 88.8 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 88.64 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 88.54 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 88.5 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 88.5 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 88.47 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 88.42 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 88.37 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 88.36 |
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-75 Score=553.00 Aligned_cols=304 Identities=44% Similarity=0.694 Sum_probs=280.0
Q ss_pred CCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccc
Q 020636 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (323)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~ 83 (323)
+.|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||++||+|+++
T Consensus 2 ~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~ 81 (352)
T 3sgz_A 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (352)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
|.||+||+++|++|+++|+++++|+++++++|||+++.+ ++.|||||+++|++.++++++||+++||++|++|||+|+.
T Consensus 82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~ 161 (352)
T 3sgz_A 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (352)
T ss_dssp GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 999999999999999999999999999999999999887 6899999999999999999999999999999999999999
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
|+|++|+|++|.+|++++++++.+... ...+.+.. ....||.++|++|+++++.+++||++|++.+.++|+.+
T Consensus 162 g~R~~d~r~~~~~p~~~~~~~~~~~~~----~~~~~~~~---~~~~d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a 234 (352)
T 3sgz_A 162 GNRRRDKRNQLNLEANILKAALRALKE----EKPTQSVP---VLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234 (352)
T ss_dssp CCCHHHHHHHHHSCHHHHTTCC----------------------CCCTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHHH
T ss_pred CcchhhhhcCCCCCcccchhhhccccc----ccccchhh---hhccCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 999999999999998777766543210 00011111 14568999999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.++|+|+|+|+||||+++++++++++.|+++++.+.+++|||++|||+++.|++|+|++||++|+|||+|+.
T Consensus 235 ~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~ 306 (352)
T 3sgz_A 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILW 306 (352)
T ss_dssp HHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 999999999999999999999999999999999887789999999999999999999999999999999975
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-68 Score=512.18 Aligned_cols=313 Identities=56% Similarity=0.884 Sum_probs=280.8
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
.+.|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|+|+++++||++||||++
T Consensus 26 ~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~ 105 (392)
T 2nzl_A 26 RLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQ 105 (392)
T ss_dssp CCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHhhCCHHHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEecccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcC-CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 020636 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~ 161 (323)
++.||++|.++|++|+++|+++++|+++++++|++.+.. +++.|||||++.|++.+.+++++++++|++++++|+|||+
T Consensus 106 ~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~ 185 (392)
T 2nzl_A 106 RMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPY 185 (392)
T ss_dssp GGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSS
T ss_pred ccccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 999999999999999999999999999999999998775 4789999999999999999999999999999999999999
Q ss_pred CCchHHHHhhccCCCCcccccccccccc--CCCcc-ccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHH
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDL--GKMDE-ANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED 238 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~ 238 (323)
.|+|++|++++|.+|+++.++++.+... .+... ..+.++..++....+++++|++|+++++.+++||++|++.++++
T Consensus 186 ~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e~ 265 (392)
T 2nzl_A 186 LGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDD 265 (392)
T ss_dssp CCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEECCHHH
T ss_pred ccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEecCCHHH
Confidence 9999999999999998886655432110 00000 11222334666677999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
|+.+.++|+|+|+|+||||++.++++++++.|+++++.+++++|||++|||+++.|++|+|++|||+|++||+|+..
T Consensus 266 A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~ 342 (392)
T 2nzl_A 266 AREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWG 342 (392)
T ss_dssp HHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHH
Confidence 99999999999999999999999999999999999998876799999999999999999999999999999998764
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-67 Score=501.04 Aligned_cols=308 Identities=35% Similarity=0.541 Sum_probs=266.0
Q ss_pred CCCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccc
Q 020636 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (323)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~ 81 (323)
..+.|++|||+.||++||+.+|+|+.||++||.|+++|+.+|++|+|+||+|++++++||+|+|+|+++++||++|||++
T Consensus 11 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma~ 90 (368)
T 2nli_A 11 IDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAA 90 (368)
T ss_dssp CCCSCSHHHHHHHHTTSCHHHHHHHHCCSBTSHHHHHHHHGGGGEEECCCCCCCCSCCCCCEEETTEEESSSEEECCCSC
T ss_pred ccCCCHHHHHHHHHHhCCHHHHhhcccCCCccHHHHHHHHHHhheeeeccccCCCccCCcceEECCEecCCceeecchhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcC-CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCC
Q 020636 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (323)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p 160 (323)
++++||++|.+++++|+++|+++++|+++++++|++.+.. +++.|||||++.|++.+.++++|++++|+++++||+|||
T Consensus 91 ~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p 170 (368)
T 2nli_A 91 HGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 170 (368)
T ss_dssp GGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 9999999999999999999999999999999999998764 478999999999999999999999999999999999999
Q ss_pred CCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHH
Q 020636 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240 (323)
Q Consensus 161 ~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~ 240 (323)
+.|+|++|++++|.+| +...++.... .. ...+..+ ++++.+.++.++|++|+++++.+++||++|++.++++|+
T Consensus 171 ~~g~r~~d~~~~~~~p--~~~~~~~~~~-~~--~~~g~~l-~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v~~~e~a~ 244 (368)
T 2nli_A 171 VSGNRDRDVKNKFVYP--FGMPIVQRYL-RG--TAEGMSL-NNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDAD 244 (368)
T ss_dssp ---CBC--------CC--SCCHHHHHHH-TT--SGGGC------CTTBCSBCCHHHHHHHHHHSSSCEEEEEECSHHHHH
T ss_pred cccchhHHHhhcccCc--chhhhhhccc-cc--CCCCchH-HhhhhccCchhhHHHHHHHHHHcCCCEEEEcCCCHHHHH
Confidence 9999999999999877 3222221000 00 0111222 344555689999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 241 ~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.++|+|+|+|+||||+++++++++++.++++++.+++++|||++|||+++.|++|+|++|||+|+|||+|+..
T Consensus 245 ~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~ 319 (368)
T 2nli_A 245 MAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFG 319 (368)
T ss_dssp HHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 999999999999999999999999999999999998876899999999999999999999999999999998764
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-65 Score=486.70 Aligned_cols=313 Identities=90% Similarity=1.319 Sum_probs=283.9
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
++.|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|+|+++++||++||||++
T Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~~ 82 (370)
T 1gox_A 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQ 82 (370)
T ss_dssp CCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHhhhCCCCCccHHHHHHHHHHhhheeeccccCCCCCCCCceEECCcccCCceeEcccchh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
.+.||++|.+++++|+++|+++++|++++.++||+.+..+++.|||||++.|++.+.++++++++.|+++++||+|||+.
T Consensus 83 ~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~ 162 (370)
T 1gox_A 83 KMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
T ss_dssp GGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred hhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence 99999999999999999999999999999999999988778899999999999999999999999999999999999999
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
|+|+++++++|.+|.++.+.++.+..........++....+++...++.++|+.++++++.+++|+++|++.++++++.+
T Consensus 163 g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a 242 (370)
T 1gox_A 163 GRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242 (370)
T ss_dssp CCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHH
T ss_pred cccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEecCCHHHHHHH
Confidence 99999999999988777655543311110001123334446666778999999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++|+|+|+|+||||+++++++++++.++++++.+++++|||++|||+++.|+.|++++|||+|+|||+|+..
T Consensus 243 ~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~ 315 (370)
T 1gox_A 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFS 315 (370)
T ss_dssp HHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred HHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHH
Confidence 9999999999999999999999999999999998876899999999999999999999999999999998753
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-63 Score=477.84 Aligned_cols=310 Identities=43% Similarity=0.733 Sum_probs=276.8
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
++.|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|+|+++++||++|||+++
T Consensus 4 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~~ 83 (380)
T 1p4c_A 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 83 (380)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHHHhCCCCCccHHHHHHHHHHhheeeeccccCCCccCcceeEECCeecCCceEecCcccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
++.||++|.+++++|+++|+++++|+++++++|++.+..+++.|||||+.+ ++...+++++++++|+++++||+|.|+.
T Consensus 84 ~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~ 162 (380)
T 1p4c_A 84 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVN 162 (380)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhccCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCccc
Confidence 999999999999999999999999999999999998765578999999888 8999999999999999999999999999
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
|+|++|++++|.+|..+...++............+.++..++....+|+++|+.|+++++.+++|+++|++.++++|+.+
T Consensus 163 g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a 242 (380)
T 1p4c_A 163 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242 (380)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred cchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 99999999999877665544431000000100111223333333458999999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++|+|+|+|+||||++.|+++++++.++++++.+ ++|||++|||+++.|+.|+|++|||+|++||+|+..
T Consensus 243 ~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~--~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~ 313 (380)
T 1p4c_A 243 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYG 313 (380)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHH
T ss_pred HHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHH
Confidence 99999999999999999999999999999999988 679999999999999999999999999999998753
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-63 Score=494.97 Aligned_cols=308 Identities=40% Similarity=0.663 Sum_probs=275.6
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
.+.|++|||+.||++||+.+|+|+++|++||.|+++|+++|++|+|+||+|++++++||+|+|+|+++++||++|||+++
T Consensus 121 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~i~l~pr~L~dv~~~d~st~i~G~~l~~Pi~iAPma~~ 200 (511)
T 1kbi_A 121 NIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALC 200 (511)
T ss_dssp GCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred ccCCHHHHHHHHHhhCCHHHhhhccCCCCchhHHHHHHHHhhhhccccccccCcccccCccccCCccCCCCeEeccchhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc-HHHHHHHHHHHH--cCCceeecCCCCCCHHHHHhcC---CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 83 KMAHP-EGEYATARAASA--AGTIMTLSSWSTSSVEEVASTG---PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 83 ~l~~~-~~e~~~a~aa~~--~G~~~~vs~~s~~~~eei~~~~---~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
+++|| ++|++++++|++ +|+++++|++++.++|++.+.. +++.|||||+..|++.+.+++++++++|+++|+||
T Consensus 201 ~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~it 280 (511)
T 1kbi_A 201 KLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVT 280 (511)
T ss_dssp GGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEE
T ss_pred cccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999 999999999999 9999999999999999998765 36899999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCH
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~ 236 (323)
+|||+.|+|+++++++|.+|... ..... +. ....+.++.+++....++.++|+.|+++|+.+++||++|++.+.
T Consensus 281 vd~p~~g~R~~~~r~g~~~p~~~-~~~~~----g~-~~~~~~g~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~ 354 (511)
T 1kbi_A 281 VDAPSLGQREKDMKLKFSNTKAG-PKAMK----KT-NVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRT 354 (511)
T ss_dssp CSCSSCCCCHHHHHHHHTTCC------------CC-CCSSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECSH
T ss_pred CCCCCccccHHHHhccCCCCccc-ccccc----cc-cccccccHHHHHhhccChHhHHHHHHHHHHHhCCcEEEEeCCCH
Confidence 99999999999999999877421 11000 00 00011222334444568999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh-----cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
++|+.+.++|+|+|+|+||||++++..+++++.|+++.+.+ .+++|||++|||+++.|++|+|++|||+|+|||+
T Consensus 355 e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~ 434 (511)
T 1kbi_A 355 EDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRP 434 (511)
T ss_dssp HHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred HHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 99999999999999999999999999999999999999887 3479999999999999999999999999999999
Q ss_pred cccCc
Q 020636 312 PCQCP 316 (323)
Q Consensus 312 ~~~~~ 316 (323)
|+...
T Consensus 435 ~l~~~ 439 (511)
T 1kbi_A 435 FLYAN 439 (511)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=312.46 Aligned_cols=274 Identities=17% Similarity=0.193 Sum_probs=209.3
Q ss_pred HHhCChhhhhhhcCCccchHHHHHhHHhhcccccccc-cccCCCCCccceeecCcccccceEECcccccccCCcHHHHHH
Q 020636 15 KEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (323)
Q Consensus 15 ~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr-~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~ 93 (323)
..+||+..|+|+++|++++ ++|..+||+|.|+|+ .+++++++|++|+|+|++++.||++|||+ ++.++ ++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~fd~v~l~p~~~~~~~~~vdlst~l~g~~l~~Pii~Apm~--g~~~~----~~ 83 (393)
T 2qr6_A 13 ENLYFQGMRDHVEIGIGRE---ARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPSD--ALASP----EF 83 (393)
T ss_dssp -CHHHHHHHHEEEEETTEE---EECCCCGGGEEECCCSCCCCGGGCBCCEEETTEEESSSEEECCCT--TTCCH----HH
T ss_pred ccccccchHHHHhcccccc---cccCCChhhEEEccCCCCCChhHCCceeEEcccccCCCeEeCCCC--CcccH----HH
Confidence 3578999999999999998 469999999999998 88999999999999999999999999998 45666 69
Q ss_pred HHHHHHcCCceeecC--------CCCCCHHHHHhcCC-------CceeEEeeecC-ChHHHHHHHHHHHHcCCcEEEEec
Q 020636 94 ARAASAAGTIMTLSS--------WSTSSVEEVASTGP-------GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTV 157 (323)
Q Consensus 94 a~aa~~~G~~~~vs~--------~s~~~~eei~~~~~-------~~~~~QLy~~~-d~~~~~~~~~~a~~~G~~al~itv 157 (323)
+++++++|.++++++ ..+.++|++++..+ .+.|+|+|... |++...+++++++++|+..++ .+
T Consensus 84 a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~-~v 162 (393)
T 2qr6_A 84 VIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAV-RV 162 (393)
T ss_dssp HHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEE-EE
T ss_pred HHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEE-Ee
Confidence 999999999999997 23345677765432 35799998655 899999999999999987665 23
Q ss_pred CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHH
Q 020636 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE 237 (323)
Q Consensus 158 d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e 237 (323)
. +.+..+....+.- .+...-.+.. .+ .......+...|+.+.++++.+++||++|++.+++
T Consensus 163 ~----~~~~~e~a~~~~~-agad~i~i~~---~~-----------~~~~~~~~~~~~~~i~~l~~~~~~pvi~ggi~t~e 223 (393)
T 2qr6_A 163 S----PQNVREIAPIVIK-AGADLLVIQG---TL-----------ISAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYT 223 (393)
T ss_dssp C----TTTHHHHHHHHHH-TTCSEEEEEC---SS-----------CCSSCCCC-----CHHHHHHHCSSCEEEECCCSHH
T ss_pred C----CccHHHHHHHHHH-CCCCEEEEeC---Cc-----------cccccCCCcccHHHHHHHHHhcCCCEEECCcCCHH
Confidence 2 2344443332210 0010000000 00 00001223447888999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEcC--CCCCCCCC-CcchHHHHHHHHHH-------hcCC-CeEEEecCCCCHHHHHHHHHcCCCEE
Q 020636 238 DARIAVQAGAAGIIVSN--HGARQLDY-VPATIMALEEVVKA-------TQGR-IPVFLDGGVRRGTDVFKALALGASGI 306 (323)
Q Consensus 238 ~a~~~~~~Gad~i~vs~--~gg~~~~~-~~~~~~~l~~i~~~-------~~~~-~pvia~GGI~~~~di~kal~lGAd~V 306 (323)
+|+.+.++|+|+|+|++ |++++.++ ++++++.|+++.+. ++++ +|||++|||+++.|++|+|++|||+|
T Consensus 224 ~a~~~~~~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V 303 (393)
T 2qr6_A 224 TALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAV 303 (393)
T ss_dssp HHHHHHTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHcCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEE
Confidence 99999999999999987 55555554 57889999988877 5333 99999999999999999999999999
Q ss_pred EEccccccCcc
Q 020636 307 FVSIMPCQCPL 317 (323)
Q Consensus 307 ~iG~~~~~~~~ 317 (323)
++||+|+.++.
T Consensus 304 ~iG~~~l~~~e 314 (393)
T 2qr6_A 304 VLGSPLARAEE 314 (393)
T ss_dssp EECGGGGGSTT
T ss_pred EECHHHHcCCC
Confidence 99999988765
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=294.64 Aligned_cols=244 Identities=26% Similarity=0.279 Sum_probs=176.5
Q ss_pred hhhhhcCCccchHHHHHhHHhhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHH---HHHHHH
Q 020636 22 VFDYYASGAEDQWTLQENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGE---YATARA 96 (323)
Q Consensus 22 ~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e---~~~a~a 96 (323)
-.+|+....+++.|+++|+.+|++|+|+||+|+ +++++||+|+|+|+++++||++|||++. |+.++ .+++++
T Consensus 7 k~~hi~~~~~~~~~~~~~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~l~~P~~iapm~g~---~~~~~~~~~~la~~ 83 (332)
T 1vcf_A 7 KRKHLEACLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGG---EENGERINLALAEA 83 (332)
T ss_dssp ----------------CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccchhhhhhcEEehhhCCCCCCCCCCcceEECCcccCCceEEeccccC---CcchhHHHHHHHHH
Confidence 358899999999999999999999999999998 8899999999999999999999999863 66554 799999
Q ss_pred HHHcCCceeecCCCCCCHHHH--------HhcCC-Ccee-----EEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 97 ASAAGTIMTLSSWSTSSVEEV--------ASTGP-GIRF-----FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 97 a~~~G~~~~vs~~s~~~~eei--------~~~~~-~~~~-----~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
|+++|+++++|++++. +|+. ....+ .+.+ .|++ ..+++...+. ++..+++++.+++++..
T Consensus 84 a~~~G~~~~~~~~~~~-le~~~~~~~~ql~~~~~d~pv~~~~~~~q~~-~~~~~~~~~a---~~~~~~~a~~i~~n~~~- 157 (332)
T 1vcf_A 84 AEALGVGMMLGSGRIL-LERPEALRSFRVRKVAPKALLIANLGLAQLR-RYGRDDLLRL---VEMLEADALAFHVNPLQ- 157 (332)
T ss_dssp HHHHTCEEEEEECHHH-HHCTTTHHHHCCTTTCSSSCEEEEEEGGGGG-TCCHHHHHHH---HHHHTCSEEEEECCHHH-
T ss_pred HHHcCCCEEeCCchhc-ccCCCccceEEeeccCCCceeecccChhhhh-ccChHHHHHH---HhhcCCCceeeccchHH-
Confidence 9999999999998764 5531 00011 1221 2332 1233433333 34457788877765310
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc--CHHHHHHHHHhcCCCEEEecc---CCHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAE 237 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~pv~vK~i---~~~e 237 (323)
+ +++ ..++++ .|+.++++++ +++||++|++ .+++
T Consensus 158 -----~----------------------------------~~~-~~~~~~~~~~~~i~~vr~-~~~Pv~vK~v~~g~~~e 196 (332)
T 1vcf_A 158 -----E----------------------------------AVQ-RGDTDFRGLVERLAELLP-LPFPVMVKEVGHGLSRE 196 (332)
T ss_dssp -----H----------------------------------HHT-TSCCCCTTHHHHHHHHCS-CSSCEEEECSSSCCCHH
T ss_pred -----H----------------------------------Hhc-CCCccHHHHHHHHHHHHc-CCCCEEEEecCCCCCHH
Confidence 0 111 112222 3889999999 9999999988 8999
Q ss_pred HHHHHHHcCCCEEEEcCCCC---------CC---------CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH
Q 020636 238 DARIAVQAGAAGIIVSNHGA---------RQ---------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 299 (323)
Q Consensus 238 ~a~~~~~~Gad~i~vs~~gg---------~~---------~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal 299 (323)
+|+.+.++|+|+|+|+|||| ++ .++++++++.|+++++.++ ++|||++|||+++.|++|+|
T Consensus 197 ~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal 275 (332)
T 1vcf_A 197 AALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP-HLPLVASGGVYTGTDGAKAL 275 (332)
T ss_dssp HHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS-SSCEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcC-CCeEEEECCCCCHHHHHHHH
Confidence 99999999999999999988 54 6778899999999998875 69999999999999999999
Q ss_pred HcCCCEEEEccccccCc
Q 020636 300 ALGASGIFVSIMPCQCP 316 (323)
Q Consensus 300 ~lGAd~V~iG~~~~~~~ 316 (323)
++|||+|++||+|+...
T Consensus 276 ~~GAd~V~igr~~l~~~ 292 (332)
T 1vcf_A 276 ALGADLLAVARPLLRPA 292 (332)
T ss_dssp HHTCSEEEECGGGHHHH
T ss_pred HhCCChHhhhHHHHHHH
Confidence 99999999999998543
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=288.17 Aligned_cols=229 Identities=20% Similarity=0.304 Sum_probs=173.0
Q ss_pred Hhhcccccccccc--cCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH--
Q 020636 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-- 116 (323)
Q Consensus 41 ~~~~~i~l~pr~l--~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee-- 116 (323)
..||+|+|+|+.| .+++++||+|+|+|+++++||+++||+++...+++.|.++|++|+++|+++++|+++.. +|+
T Consensus 54 ~~fd~i~l~~~~lP~~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~-le~~~ 132 (365)
T 3sr7_A 54 NSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA-LKNPD 132 (365)
T ss_dssp CGGGGEEECCCSSCCSCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------
T ss_pred CCcceEEEECCCCCcCCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc-ccCcc
Confidence 4799999999999 78899999999999999999999999998888889999999999999999999998642 222
Q ss_pred -----HHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccC
Q 020636 117 -----VASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (323)
Q Consensus 117 -----i~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~ 190 (323)
+.+..| .+.+..|......+ +..+.++..|++++.++++...
T Consensus 133 ~~~~~v~r~~P~~~~ianig~~~~~e---~~~~~ve~~~adal~ihln~~q----------------------------- 180 (365)
T 3sr7_A 133 DTSYQVKKSRPHLLLATNIGLDKPYQ---AGLQAVRDLQPLFLQVHINLMQ----------------------------- 180 (365)
T ss_dssp ------------CCEEEEEETTSCHH---HHHHHHHHHCCSCEEEEECHHH-----------------------------
T ss_pred ccceEehhhCCCCcEEEEeCCCCCHH---HHHHHHHhcCCCEEEEeccccc-----------------------------
Confidence 222223 34455554332332 4456667889999999987421
Q ss_pred CCccccchhhHHHHhhccCCcc-CH-HHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCCCCC-----
Q 020636 191 KMDEANDSGLAAYVAGQIDRSL-SW-KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL----- 260 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg~~~----- 260 (323)
+.+++.+++++ .| +.|+++++.+++||++|++ .++++|+.+.++|+|+|+|+||||+++
T Consensus 181 -----------e~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~ 249 (365)
T 3sr7_A 181 -----------ELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIEN 249 (365)
T ss_dssp -----------HHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC---------
T ss_pred -----------cccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhc
Confidence 01122345556 56 6799999999999999988 899999999999999999999999864
Q ss_pred ----------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 261 ----------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 261 ----------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.+.++.+.|+++. .+.+++|||++|||+++.|++|+|++|||+|++||+|+.
T Consensus 250 ~r~~~~~~~~~~g~pt~~~L~~v~-~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~ 312 (365)
T 3sr7_A 250 RRGGNRSYLNQWGQTTAQVLLNAQ-PLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLE 312 (365)
T ss_dssp -----CGGGTTCSCBHHHHHHHHG-GGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred cccccccccccccccHHHHHHHHH-HhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 56778888888764 444579999999999999999999999999999999975
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=273.15 Aligned_cols=233 Identities=23% Similarity=0.259 Sum_probs=182.1
Q ss_pred hHHhhccccccccccc--CCCCCccceeecCcccccceEECcccccc-cCCcHHHHHHHHHHHHcCCceeecCCCCCCHH
Q 020636 39 NRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQK-MAHPEGEYATARAASAAGTIMTLSSWSTSSVE 115 (323)
Q Consensus 39 N~~~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~-l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~e 115 (323)
+..+|++|+|+||+|+ +++++|++|+|+|.++++||++|||++.. ..++++|.+++++|.++|+++++|++++. ++
T Consensus 21 ~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~-l~ 99 (349)
T 1p0k_A 21 RETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA-LK 99 (349)
T ss_dssp CCCSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT-TT
T ss_pred ccCccceEEEEccccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc-cc
Confidence 3568999999999998 77899999999999999999999996531 22345588999999999999999998654 33
Q ss_pred H---------HHhcC-CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccccc
Q 020636 116 E---------VASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (323)
Q Consensus 116 e---------i~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~ 185 (323)
+ +.+.. ..+.+.|+....+.+... +.++++|++++.++++||... +
T Consensus 100 ~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~---~~~~~~gad~i~i~~~~~~~~---------~------------ 155 (349)
T 1p0k_A 100 DPSERLSYEIVRKENPNGLIFANLGSEATAAQAK---EAVEMIGANALQIHLNVIQEI---------V------------ 155 (349)
T ss_dssp CHHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHH---HHHHHTTCSEEEEEECTTTTC----------------------
T ss_pred CcccccceehhhhhCCCceeEEeecCCCCHHHHH---HHHHhcCCCeEEecccchhhh---------c------------
Confidence 2 22223 357888887445555433 445678999999999997520 0
Q ss_pred ccccCCCccccchhhHHHHhhccCCcc--CHHHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCC---
Q 020636 186 GLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA--- 257 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg--- 257 (323)
+...++.+ .++.++++++.+++||++|++ .+.++++.+.++|+|+|+++||||
T Consensus 156 -------------------~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~ 216 (349)
T 1p0k_A 156 -------------------MPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNF 216 (349)
T ss_dssp --------------------------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC------
T ss_pred -------------------CCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCcch
Confidence 00123444 357899999999999999986 789999999999999999999988
Q ss_pred ------CC-------CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 258 ------RQ-------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 258 ------~~-------~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
++ .++++++.+.|+++.+.+ .++|||++|||++++|+.|++++|||+|++||+|+...
T Consensus 217 ~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~-~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~ 287 (349)
T 1p0k_A 217 SKIENLRRQRQISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKAL 287 (349)
T ss_dssp ---------CCGGGGTTCSCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred hhHHHhhcccchhhhhccCccHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 33 466788899999998876 47999999999999999999999999999999998753
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=267.84 Aligned_cols=218 Identities=19% Similarity=0.207 Sum_probs=181.6
Q ss_pred HhhcccccccccccCCC--CCc--cceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH
Q 020636 41 NAFSRILFRPRILIDVS--KID--MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE 116 (323)
Q Consensus 41 ~~~~~i~l~pr~l~~~~--~~d--~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee 116 (323)
.+||+|.|+|+.+.+++ ++| ++|+|+|++++.||++||| ++.+|.++|++++++|.+++++++ .++|+
T Consensus 8 ~~fddv~l~P~~~~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM------~~vte~~lA~A~a~~Gg~gvi~~~--~s~ee 79 (361)
T 3r2g_A 8 ITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVISANM------DTITESNMANFMHSKGAMGALHRF--MTIEE 79 (361)
T ss_dssp CCGGGEEECCCCCCSCTTCCCCCCEECTTSSCEESSCEEECCS------TTTCSHHHHHHHHHTTCEEBCCSC--SCHHH
T ss_pred cccceEEEECCCCCCCccccccceeeEEECCEEcCCCEEECCC------CCchHHHHHHHHHHcCCCEEEeCC--CCHHH
Confidence 37999999999998877 765 5559999999999999998 445788999999999999999964 78899
Q ss_pred HHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCcccc
Q 020636 117 VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (323)
Q Consensus 117 i~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (323)
+.+..+...|+|.|...+++...+.++++.++|++.|. +|++. |
T Consensus 80 ~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~--id~a~-G--------------------------------- 123 (361)
T 3r2g_A 80 NIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFC--VDVAH-A--------------------------------- 123 (361)
T ss_dssp HHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEE--EECSC-C---------------------------------
T ss_pred HHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEE--EeCCC-C---------------------------------
Confidence 88765555688998877888888899999999999554 55543 1
Q ss_pred chhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCC------CCcchHHH
Q 020636 197 DSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD------YVPATIMA 269 (323)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~------~~~~~~~~ 269 (323)
.+...|+.|+++|+.+ +.||++|.+.++++|+.+.++|+|+|+|++|+|+..+ .+.+.++.
T Consensus 124 ------------~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~a 191 (361)
T 3r2g_A 124 ------------HAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTC 191 (361)
T ss_dssp ------------SSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHH
T ss_pred ------------CcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHH
Confidence 0112378899999988 6899999999999999999999999999998886542 23557777
Q ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 270 l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+.++.+.+ + |||++|||+++.|+.|+|++|||+|++||+|+++.+
T Consensus 192 I~~~~~~~--~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~E 236 (361)
T 3r2g_A 192 IQDCSRAD--R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAP 236 (361)
T ss_dssp HHHHTTSS--S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTT
T ss_pred HHHHHHhC--C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCcc
Confidence 77776554 3 999999999999999999999999999999999864
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=264.65 Aligned_cols=230 Identities=19% Similarity=0.206 Sum_probs=176.8
Q ss_pred Hhhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCC------
Q 020636 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------ 112 (323)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~------ 112 (323)
..||+|+|+|+.|. +.+++||+|+|+|++++.||++|||+++.....+.+..+|++|+++|+++++|+++..
T Consensus 27 ~~~~~v~l~~~~lp~~~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~ 106 (368)
T 3vkj_A 27 TFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEA 106 (368)
T ss_dssp CSGGGEEECCCSSCBSBGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGG
T ss_pred CCcceEEEEcCCCCccCcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHH
Confidence 36999999999997 8899999999999999999999999885322223467899999999999999998421
Q ss_pred --CHHHHHhcCC-CceeEEeee----c-CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccc
Q 020636 113 --SVEEVASTGP-GIRFFQLYV----Y-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (323)
Q Consensus 113 --~~eei~~~~~-~~~~~QLy~----~-~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~ 184 (323)
+.+-+++.+| .+.+..+.. . .+.+...+. ++..++.++.|+++...
T Consensus 107 ~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~~a---v~~~~a~al~Ihln~~~----------------------- 160 (368)
T 3vkj_A 107 RESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDA---IQMIEADAIAVHLNPAQ----------------------- 160 (368)
T ss_dssp SHHHHHHHHHCSSSCEEEEEEGGGGGTTCCHHHHHHH---HHHTTCSEEEEECCHHH-----------------------
T ss_pred HhhHHHHHHhCcCcceecCcCeeecCCCCCHHHHHHH---HHHhcCCCeEEEecchh-----------------------
Confidence 1222444455 334444433 2 344443333 34457788888865210
Q ss_pred cccccCCCccccchhhHHHHhhccCCcc---CHHHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCC-
Q 020636 185 QGLDLGKMDEANDSGLAAYVAGQIDRSL---SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA- 257 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg- 257 (323)
+.+++.+++++ .++.|+++++.+++||++|++ .++++|+.+.++|+|+|+|+||||
T Consensus 161 -----------------~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt 223 (368)
T 3vkj_A 161 -----------------EVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGT 223 (368)
T ss_dssp -----------------HHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSB
T ss_pred -----------------hhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 01122334545 377899999999999999987 899999999999999999999999
Q ss_pred --------CCC--------------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 258 --------RQL--------------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 258 --------~~~--------------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
|+. +.+.|+...|.++++.++ ++|||++|||+++.|++|+|++|||+|++||+|+.
T Consensus 224 ~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~-~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~ 301 (368)
T 3vkj_A 224 NWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVP-DSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLK 301 (368)
T ss_dssp CHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHST-TCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred cccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 332 236778888999988874 69999999999999999999999999999999884
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=251.98 Aligned_cols=222 Identities=16% Similarity=0.141 Sum_probs=161.1
Q ss_pred HHHHHhHHhhccccccccc--ccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcC-CceeecCCC
Q 020636 34 WTLQENRNAFSRILFRPRI--LIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWS 110 (323)
Q Consensus 34 ~t~~~N~~~~~~i~l~pr~--l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G-~~~~vs~~s 110 (323)
+-.-+|..+||+|.|+||+ +++++++|++|+|+|++++.||++|||++. . +..+++++.+.| +.+...++.
T Consensus 7 ~~~~~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~--s----~~~la~a~~~~gg~g~~~~~~~ 80 (336)
T 1ypf_A 7 HHHMGNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFKLPVVPANMQTI--I----DERIATYLAENNYFYIMHRFQP 80 (336)
T ss_dssp -----CCCCGGGEEECCCCCCCSSGGGCBCCEEETTEEESSSEEECSSTTT--C----CHHHHHHHHHTTCCCCCCCSSG
T ss_pred cccccccCCcceEEEecccCCCCCcccCcceEEECCEEecCcEEECCCCCC--C----hHHHHHHHHhCCCEEEecCCCC
Confidence 4456899999999999999 589999999999999999999999999874 1 235666645544 444443322
Q ss_pred CCCHHH-HHhc--CCCceeEEeeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCCchHHHHhhccCCCCcccccccc
Q 020636 111 TSSVEE-VAST--GPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (323)
Q Consensus 111 ~~~~ee-i~~~--~~~~~~~QLy~~~d~~~~~~~~~~a~~~G--~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~ 185 (323)
. ..++ +.+. ..-+..+|+ ..+++.. +.++.+.+.| ++.+.+++ ..
T Consensus 81 ~-~~~~~i~~~~~~g~~v~v~~--g~~~~~~-~~a~~~~~~g~~~~~i~i~~--~~------------------------ 130 (336)
T 1ypf_A 81 E-KRISFIRDMQSRGLIASISV--GVKEDEY-EFVQQLAAEHLTPEYITIDI--AH------------------------ 130 (336)
T ss_dssp G-GHHHHHHHHHHTTCCCEEEE--CCSHHHH-HHHHHHHHTTCCCSEEEEEC--SS------------------------
T ss_pred H-HHHHHHHHHHhcCCeEEEeC--CCCHHHH-HHHHHHHhcCCCCCEEEEEC--CC------------------------
Confidence 1 1222 2211 111344553 2233322 3345555666 55555432 10
Q ss_pred ccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcCCCCCCCCC--
Q 020636 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDY-- 262 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~-- 262 (323)
+++...|+.|+++++.++.|+++|+ +.+.++|+.+.++|||+|+++||||++.++
T Consensus 131 ----------------------G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~ 188 (336)
T 1ypf_A 131 ----------------------GHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKI 188 (336)
T ss_dssp ----------------------CCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHH
T ss_pred ----------------------CCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeeccc
Confidence 1333568899999999987788888 899999999999999999999999987642
Q ss_pred ----Ccc--hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 263 ----VPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 263 ----~~~--~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+.+ +++.|+++++.+ ++|||++|||+++.|++|+|++|||+|++||+|+++
T Consensus 189 ~~~~g~~g~~~~~l~~v~~~~--~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t 245 (336)
T 1ypf_A 189 KTGFGTGGWQLAALRWCAKAA--SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGH 245 (336)
T ss_dssp HHSCSSTTCHHHHHHHHHHTC--SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTC
T ss_pred ccCcCCchhHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhcc
Confidence 234 788999999887 899999999999999999999999999999999964
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=243.27 Aligned_cols=224 Identities=19% Similarity=0.153 Sum_probs=167.7
Q ss_pred HHHHhHHhhccccccccccc-CC-CCCccceeec-----CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec
Q 020636 35 TLQENRNAFSRILFRPRILI-DV-SKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS 107 (323)
Q Consensus 35 t~~~N~~~~~~i~l~pr~l~-~~-~~~d~~t~i~-----g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs 107 (323)
-+++|..+||+|.|+|+++. ++ +++||+|+|+ +++++.||++|||++. ++..+|++++++|..++++
T Consensus 14 ~~~~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~~------~~~~lA~Ava~~Gglg~i~ 87 (351)
T 2c6q_A 14 LVPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTV------GTFEMAKVLCKFSLFTAVH 87 (351)
T ss_dssp -----CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTTT------SCHHHHHHHHHTTCEEECC
T ss_pred ccccCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCCC------CcHHHHHHHHHCCCEEEEc
Confidence 36889999999999999985 67 7999999999 9999999999999863 4568999999999988887
Q ss_pred CCCCCCHHHHHhc---CCC---ceeEEeeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCCchHHHHhhccCCCCcc
Q 020636 108 SWSTSSVEEVAST---GPG---IRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (323)
Q Consensus 108 ~~s~~~~eei~~~---~~~---~~~~QLy~~~d~~~~~~~~~~a~~~--G~~al~itvd~p~~g~r~~d~~~~~~~~~~~ 179 (323)
. +.++|++.+. .|. .....+ ..+.+.. +.++.+.+. |++.+.+++. .
T Consensus 88 ~--~~s~e~~~~~i~~~p~~l~~v~~~~--g~~~~~~-~~~~~l~~~~~g~~~i~i~~~--~------------------ 142 (351)
T 2c6q_A 88 K--HYSLVQWQEFAGQNPDCLEHLAASS--GTGSSDF-EQLEQILEAIPQVKYICLDVA--N------------------ 142 (351)
T ss_dssp T--TCCHHHHHHHHHHCGGGCTTEEEEE--CSSHHHH-HHHHHHHHHCTTCCEEEEECS--C------------------
T ss_pred C--CCCHHHHHHHHhhCchhhheeEeec--CCChHHH-HHHHHHHhccCCCCEEEEEec--C------------------
Confidence 4 4567776543 221 112222 2233322 233333343 7777665431 1
Q ss_pred ccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC
Q 020636 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR 258 (323)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~ 258 (323)
+++...|+.++++|+.+ ++||++|++.+.++|+.+.++|+|+|+|++++|.
T Consensus 143 ----------------------------g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~ 194 (351)
T 2c6q_A 143 ----------------------------GYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGS 194 (351)
T ss_dssp ----------------------------TTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCST
T ss_pred ----------------------------CCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCc
Confidence 01223578999999999 7999999999999999999999999999988763
Q ss_pred -----CCC-CCcchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 259 -----QLD-YVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 259 -----~~~-~~~~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+.+ .+.+++..|.++.+.++. ++|||++|||+++.|++|||++|||+|++||+|+.+++
T Consensus 195 ~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~E 260 (351)
T 2c6q_A 195 VCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSE 260 (351)
T ss_dssp TBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred CcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCcc
Confidence 222 246778888888766532 69999999999999999999999999999999987543
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=228.32 Aligned_cols=261 Identities=18% Similarity=0.199 Sum_probs=157.0
Q ss_pred Hhhccccccccccc-CCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH
Q 020636 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (323)
Q Consensus 41 ~~~~~i~l~pr~l~-~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~ 118 (323)
.+||+|.|+|+.+. +++++|++|+|+ |++++.||++|||++. +++ .++.++.++|...+++ ++.++|++.
T Consensus 10 ~~fd~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~~----~~~--ela~a~a~aGglg~i~--~~~s~e~~~ 81 (404)
T 1eep_A 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV----TES--QMAIAIAKEGGIGIIH--KNMSIEAQR 81 (404)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTT----CSH--HHHHHHHHHTSEEEEC--SSSCHHHHH
T ss_pred CCcccEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCCC----CCH--HHHHHHHHCCCEEEEC--CCCCHHHHH
Confidence 46999999999996 789999999999 9999999999999873 333 5666688888888887 456788776
Q ss_pred hcCCCceeEE----eeecCChHHH-HHHHHHHHHc----CCcEEEEecCCCCCCchHHHHhhccCCCCcccccccccccc
Q 020636 119 STGPGIRFFQ----LYVYKDRNVV-AQLVRRAERA----GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (323)
Q Consensus 119 ~~~~~~~~~Q----Ly~~~d~~~~-~~~~~~a~~~----G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~ 189 (323)
+..+...++| ++...+.... .+++...... +++.+..+.+.|.. .|+.+-+..+ .. ++....
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~----~~---~i~~~~- 152 (404)
T 1eep_A 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNA-CKDLNNKLRV----GA---AVSIDI- 152 (404)
T ss_dssp HHHHHHHTCC--------------------------------------CCTTC-CBCTTSCBCC----EE---EECSCT-
T ss_pred HHHHHHHhhccCCCceeccccccccccccccCCCCCHHHHHHHHHHhhhcchh-hhhcccCceE----EE---EeCCCh-
Confidence 5432222222 3322221100 0011000000 11111122222321 1110000000 00 000000
Q ss_pred CCCc---c--ccchhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC----
Q 020636 190 GKMD---E--ANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---- 259 (323)
Q Consensus 190 ~~~~---~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~---- 259 (323)
.... . ..+...........++...|+.++++++.+ ++||+++++.+.++|+.+.++|+|+|+++.++|+.
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~ 232 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTR 232 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHH
T ss_pred hHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCcCcCcc
Confidence 0000 0 000000000001235556789999999999 78999999999999999999999999995544431
Q ss_pred --CCCCcchHHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 260 --LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 260 --~~~~~~~~~~l~~i~~~~~-~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
...+.+.++.+.++.+.++ .++|||++|||+++.|+.|++++|||+|++||+|+.+++.
T Consensus 233 ~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~ 294 (404)
T 1eep_A 233 IVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKES 294 (404)
T ss_dssp HHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTS
T ss_pred ccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCC
Confidence 1123456778888877553 3799999999999999999999999999999999887654
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-23 Score=194.43 Aligned_cols=215 Identities=20% Similarity=0.255 Sum_probs=159.6
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHH--
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-- 117 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei-- 117 (323)
.||++.|+|+.- .+.+++|++|+|. ++.+..||+.+||+.. ++..+|.+.++.|...++.. ..+.++.
T Consensus 14 ~fddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~v------t~~~lA~avA~~GGlgii~~--~~s~e~~~~ 85 (361)
T 3khj_A 14 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTV------TEHLMAVGMARLGGIGIIHK--NMDMESQVN 85 (361)
T ss_dssp CGGGEEECCCCBCCCGGGCCCCEESSSSCEESSSEEECSSTTT------CSHHHHHHHHHTTCEEEECS--SSCHHHHHH
T ss_pred CcceEEEECCCCCCCHHHccCceecccccccCCCEEeecCCCC------CcHHHHHHHHHcCCCeEEec--CCCHHHHHH
Confidence 699999999832 3457899999997 6899999999999864 24478988777776666653 3344443
Q ss_pred --Hhc---CCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCC
Q 020636 118 --AST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (323)
Q Consensus 118 --~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~ 192 (323)
.+. ...+..+++... + .+.++.+.++|++.+.|+ ++.
T Consensus 86 ~I~~vk~~~~~pvga~ig~~-~----~e~a~~l~eaGad~I~ld--~a~------------------------------- 127 (361)
T 3khj_A 86 EVLKVKNSGGLRVGAAIGVN-E----IERAKLLVEAGVDVIVLD--SAH------------------------------- 127 (361)
T ss_dssp HHHHHHHTTCCCCEEEECTT-C----HHHHHHHHHTTCSEEEEC--CSC-------------------------------
T ss_pred HHHHHHhccCceEEEEeCCC-H----HHHHHHHHHcCcCeEEEe--CCC-------------------------------
Confidence 222 223456666532 2 456777888999977654 322
Q ss_pred ccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC------CCCcch
Q 020636 193 DEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPAT 266 (323)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~------~~~~~~ 266 (323)
.++....+.++++++.++.|++++.+.+.++++.+.++|+|+|+++.++|... ..+.+.
T Consensus 128 ---------------G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~ 192 (361)
T 3khj_A 128 ---------------GHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQ 192 (361)
T ss_dssp ---------------CSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCH
T ss_pred ---------------CCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCc
Confidence 01222356788999988999999999999999999999999999965444211 223567
Q ss_pred HHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 267 IMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 267 ~~~l~~i~~~~~-~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+..+.++.+.+. .++|||++|||+++.|+.|++++|||+|++|++|+++++
T Consensus 193 ~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~E 244 (361)
T 3khj_A 193 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEE 244 (361)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTT
T ss_pred HHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCc
Confidence 788888765432 179999999999999999999999999999999999875
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=196.74 Aligned_cols=203 Identities=21% Similarity=0.197 Sum_probs=153.4
Q ss_pred ccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCC---------CHHHHHhcCCCceeEEeeecCChHHHH
Q 020636 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS---------SVEEVASTGPGIRFFQLYVYKDRNVVA 139 (323)
Q Consensus 69 ~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~---------~~eei~~~~~~~~~~QLy~~~d~~~~~ 139 (323)
+++.||++|||++. . +.+++..+++.|..++++++.+. .++.+....+.+.++||+ ..+++...
T Consensus 2 ~l~nri~~APM~~~--t----~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l~~~~~~~~~~QL~-g~~~~~~~ 74 (318)
T 1vhn_A 2 SLEVKVGLAPMAGY--T----DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIF-GSEPNELS 74 (318)
T ss_dssp ---CEEEECCCTTT--C----SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEE-CSCHHHHH
T ss_pred ccCCCEEECCCCCC--C----cHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhhhCcCCCeEEEEeC-CCCHHHHH
Confidence 57899999999853 2 46899999999999999887431 122221112368999999 67899999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHH
Q 020636 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 219 (323)
Q Consensus 140 ~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (323)
+.+++++++ +++|.||++||....|. .++ |+++ ..++.+.++.+++
T Consensus 75 ~aa~~a~~~-~d~Iein~gcP~~~~r~----~~~-----------------------G~~l------~~~~~~~~eiv~~ 120 (318)
T 1vhn_A 75 EAARILSEK-YKWIDLNAGCPVRKVVK----EGA-----------------------GGAL------LKDLRHFRYIVRE 120 (318)
T ss_dssp HHHHHHTTT-CSEEEEEECCCCHHHHH----TTC-----------------------GGGG------GSCHHHHHHHHHH
T ss_pred HHHHHHHHh-CCEEEEECCCCcHhcCC----CCc-----------------------ccch------hhCHHHHHHHHHH
Confidence 999999999 99999999999842221 111 1111 2367788999999
Q ss_pred HHHhcCCCEEEe---ccC---CHHHHHHHHHcCCCEEEEcCCCCCCCC--CCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 220 LQTITKLPILVK---GVL---TAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 220 i~~~~~~pv~vK---~i~---~~e~a~~~~~~Gad~i~vs~~gg~~~~--~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+++.++.||.+| |+. +.+.++.+.++|+|+|+|++ ++..+ .+++.++.++++++ ++|||++|||+|
T Consensus 121 v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g--~~~~~~~~~~~~~~~i~~i~~----~ipVi~~GgI~s 194 (318)
T 1vhn_A 121 LRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHT--RTVVQSFTGRAEWKALSVLEK----RIPTFVSGDIFT 194 (318)
T ss_dssp HHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEES--SCTTTTTSSCCCGGGGGGSCC----SSCEEEESSCCS
T ss_pred HHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcC--CCccccCCCCcCHHHHHHHHc----CCeEEEECCcCC
Confidence 999999999999 443 23789999999999999954 43322 34455666665543 799999999999
Q ss_pred HHHHHHHHH-cCCCEEEEccccccCcch
Q 020636 292 GTDVFKALA-LGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 292 ~~di~kal~-lGAd~V~iG~~~~~~~~~ 318 (323)
++|+.++++ .|||+|++||+++.+|++
T Consensus 195 ~~da~~~l~~~gad~V~iGR~~l~~P~l 222 (318)
T 1vhn_A 195 PEDAKRALEESGCDGLLVARGAIGRPWI 222 (318)
T ss_dssp HHHHHHHHHHHCCSEEEESGGGTTCTTH
T ss_pred HHHHHHHHHcCCCCEEEECHHHHhCcch
Confidence 999999999 799999999999999976
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-22 Score=188.57 Aligned_cols=219 Identities=23% Similarity=0.244 Sum_probs=158.8
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|..- .+.+++|++|+|. .+.+..||+.|||+.. ++..+|.+.+++|...++.. +.+.|++.+
T Consensus 15 ~fddv~lvp~~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~v------s~~~lA~avA~aGGlg~i~~--~~s~e~~~~ 86 (366)
T 4fo4_A 15 TFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTV------TEARLAIALAQEGGIGFIHK--NMSIEQQAA 86 (366)
T ss_dssp CGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHTTCEEEECS--SSCHHHHHH
T ss_pred CcceEEEECCCCCCChhhcccceecccccccCCCEEeCCCCCC------ChHHHHHHHHHcCCceEeec--CCCHHHHHH
Confidence 599999999733 3456899999997 5889999999999864 34479988888888777764 344554322
Q ss_pred c----CC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCcc
Q 020636 120 T----GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194 (323)
Q Consensus 120 ~----~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (323)
. .. +++.+.+-...++ ...+.++.+.++|++.+.|+. .. |
T Consensus 87 ~i~~vk~~~~l~vga~vg~~~-~~~~~~~~lieaGvd~I~idt--a~-G------------------------------- 131 (366)
T 4fo4_A 87 QVHQVKISGGLRVGAAVGAAP-GNEERVKALVEAGVDVLLIDS--SH-G------------------------------- 131 (366)
T ss_dssp HHHHHHTTTSCCCEEECCSCT-TCHHHHHHHHHTTCSEEEEEC--SC-T-------------------------------
T ss_pred HHHHHHhcCceeEEEEeccCh-hHHHHHHHHHhCCCCEEEEeC--CC-C-------------------------------
Confidence 1 11 2233333222222 234567778889999877642 21 0
Q ss_pred ccchhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC------CCCcchH
Q 020636 195 ANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPATI 267 (323)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~------~~~~~~~ 267 (323)
++....+.++++++.+ ++|++++.+.+.++|+.+.++|+|+|+++...|... ..+.+.+
T Consensus 132 --------------~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~ 197 (366)
T 4fo4_A 132 --------------HSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQI 197 (366)
T ss_dssp --------------TSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHH
T ss_pred --------------CCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchH
Confidence 1112345688999988 788888889999999999999999999943333211 2245778
Q ss_pred HHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 268 MALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 268 ~~l~~i~~~~~-~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
..+.++.+.+. .++|||++|||+++.|+.|+|++|||+|++|++|+++++
T Consensus 198 ~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~E 248 (366)
T 4fo4_A 198 TAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEE 248 (366)
T ss_dssp HHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred HHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCC
Confidence 88888876542 279999999999999999999999999999999999765
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=184.85 Aligned_cols=237 Identities=16% Similarity=0.156 Sum_probs=148.4
Q ss_pred CCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeee------
Q 020636 58 KIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYV------ 131 (323)
Q Consensus 58 ~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~------ 131 (323)
.+|++++|+|.++++||++|+ ++ +++++ +++++++.|++++++... +.+.. ...+.++|+|+|-
T Consensus 42 ~~~l~~~i~g~~l~npi~~aa-g~----~~~~~--~~~~~a~~G~g~i~~~~~--~~~~~-~g~~~pr~~~~~~d~~~in 111 (336)
T 1f76_A 42 VPAKPVNCMGLTFKNPLGLAA-GL----DKDGE--CIDALGAMGFGSIEIGTV--TPRPQ-PGNDKPRLFRLVDAEGLIN 111 (336)
T ss_dssp CCCCCEEETTEEESSSEEECT-TS----STTCC--CHHHHHHTTCSEEEEEEE--CSSCB-CCSCSCCEEEETTTTEEEE
T ss_pred CCCCCeEECCEEcCCCcEeCc-cc----CCcHH--HHHHHHHcCccEEEeCCC--CCCCC-CCCCCcceeeccccceeee
Confidence 489999999999999999996 23 33343 888899999998755321 12211 1123456777651
Q ss_pred ---cCChHHHHHHHHHHHHcCCc-EEEEecCCCCC---CchHHHHhhccCC----CCccccccccccccCCCccccchhh
Q 020636 132 ---YKDRNVVAQLVRRAERAGFK-AIALTVDTPRL---GRREADIKNRFTL----PPFLTLKNFQGLDLGKMDEANDSGL 200 (323)
Q Consensus 132 ---~~d~~~~~~~~~~a~~~G~~-al~itvd~p~~---g~r~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (323)
..+++ ..++++++++.+.+ .+++++..... .....++...+.. .+.+++.. + .|.. ++
T Consensus 112 ~~g~~~~g-~~~~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~--~---sP~~--~g--- 180 (336)
T 1f76_A 112 RMGFNNLG-VDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINI--S---SPNT--PG--- 180 (336)
T ss_dssp CCCCCBCC-HHHHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEEC--C---CSSS--TT---
T ss_pred cCCCCCcC-HHHHHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEc--c---CCCC--CC---
Confidence 01111 23445555554443 56666532110 0112333222210 00111100 0 0000 00
Q ss_pred HHHHhhccCCccCHHHHHHHHHhc---------CCCEEEeccC--CHHH----HHHHHHcCCCEEEEcCCC-CCC-----
Q 020636 201 AAYVAGQIDRSLSWKDVKWLQTIT---------KLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHG-ARQ----- 259 (323)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~i~~~~---------~~pv~vK~i~--~~e~----a~~~~~~Gad~i~vs~~g-g~~----- 259 (323)
.+. ..++.+.++.++++|+.+ +.||++|... +.++ |+.+.++|+|+|+++|++ +++
T Consensus 181 ~~~---~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~ 257 (336)
T 1f76_A 181 LRT---LQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGM 257 (336)
T ss_dssp GGG---GGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTS
T ss_pred ccc---ccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccc
Confidence 011 124567789999999988 8999999653 3333 789999999999999875 222
Q ss_pred ----CCC---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc-Ccch
Q 020636 260 ----LDY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ-CPLT 318 (323)
Q Consensus 260 ----~~~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~-~~~~ 318 (323)
..+ + +.+++.++++++.+++++|||++|||+|++|+.++|++|||+|++||+|+. .|++
T Consensus 258 ~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~ 328 (336)
T 1f76_A 258 KNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPL 328 (336)
T ss_dssp TTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHH
T ss_pred cccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHH
Confidence 011 1 124578888888886689999999999999999999999999999999987 6765
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=186.09 Aligned_cols=220 Identities=20% Similarity=0.256 Sum_probs=149.4
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|... +..+++|++|.|. ...+..||+.|||++ +..+ .||.+.+++|...+++. ..++|++++
T Consensus 11 t~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~--Vs~~----~lA~Ava~aGGlGvi~~--~~~~e~~~~ 82 (400)
T 3ffs_A 11 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDT--VTEH----LMAVGMARLGGIGIIHK--NMDMESQVN 82 (400)
T ss_dssp CGGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTT--TCSS----HHHHHHHTTTCEEEECS--SSCHHHHHH
T ss_pred CceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCC--cCcH----HHHHHHHHCCCEEEeCC--CCCHHHHHH
Confidence 599999999754 4557899999985 578899999999985 3444 79999999999999985 455655432
Q ss_pred c-------CC----Ccee--EEeeec-CChHHH------------------------------HHHHHHHHHcCCcEEEE
Q 020636 120 T-------GP----GIRF--FQLYVY-KDRNVV------------------------------AQLVRRAERAGFKAIAL 155 (323)
Q Consensus 120 ~-------~~----~~~~--~QLy~~-~d~~~~------------------------------~~~~~~a~~~G~~al~i 155 (323)
. .. .|+- ..|++. .+.+.. .+.++.+.++|++.+++
T Consensus 83 ~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~~e~~~~lveaGvdvIvl 162 (400)
T 3ffs_A 83 EVLKVKNWISNLEKNESTPDQNLDKESTDGKDTKSNNNIDAYSNENLDNKGRLRVGAAIGVNEIERAKLLVEAGVDVIVL 162 (400)
T ss_dssp HHHHHHCCC-------------------------------CCTTCCBCTTSSBCCEEEECCC-CHHHHHHHHHTCSEEEE
T ss_pred HHHHHHhhccCcccCCCCccccccCCCCCHHHHHHHHHhhhCcchhhccccceeEEeecCCCHHHHHHHHHHcCCCEEEE
Confidence 1 11 1111 222210 000000 11222222223332221
Q ss_pred ecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC
Q 020636 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT 235 (323)
Q Consensus 156 tvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~ 235 (323)
+ + ..+++....+.++++++.+++||+++.+.+
T Consensus 163 d--t----------------------------------------------a~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t 194 (400)
T 3ffs_A 163 D--S----------------------------------------------AHGHSLNIIRTLKEIKSKMNIDVIVGNVVT 194 (400)
T ss_dssp C--C----------------------------------------------SCCSBHHHHHHHHHHHTTCCCEEEEEEECS
T ss_pred e--C----------------------------------------------CCCCcccHHHHHHHHHhcCCCeEEEeecCC
Confidence 1 0 011222336778999998899999999999
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCC-----CC-CCCcchHHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 236 AEDARIAVQAGAAGIIVSNHGAR-----QL-DYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~-----~~-~~~~~~~~~l~~i~~~~~-~~~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
.++|+.+.++|+|+|+++..+|+ .. ..+.+.+.++.++.+.+. .++|||++|||+++.|+.++|++||++|++
T Consensus 195 ~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 195 EEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999533231 11 224678889999887753 279999999999999999999999999999
Q ss_pred ccccccCcc
Q 020636 309 SIMPCQCPL 317 (323)
Q Consensus 309 G~~~~~~~~ 317 (323)
|++|+++++
T Consensus 275 Gt~f~~t~E 283 (400)
T 3ffs_A 275 GSILAGTEE 283 (400)
T ss_dssp CGGGTTBTT
T ss_pred ChHHhcCCC
Confidence 999999765
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=209.56 Aligned_cols=220 Identities=23% Similarity=0.300 Sum_probs=165.7
Q ss_pred CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceee-cCCCC----------------------
Q 020636 55 DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST---------------------- 111 (323)
Q Consensus 55 ~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~s~---------------------- 111 (323)
.+.+++++++++|.++++||++|||++. .+.++++.+.+.|.++++ .+.+.
T Consensus 527 ev~~v~ls~~~~G~~~~nPv~lAa~~~~------~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~ 600 (1025)
T 1gte_A 527 PVDLVDISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMY 600 (1025)
T ss_dssp GGGGCCCCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCC
T ss_pred ccccccceeeeccccccCcccccCCCCC------CCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEecccccccc
Confidence 4578999999999999999999999764 344678888888988886 21110
Q ss_pred ---------------CC-------HHHHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHH
Q 020636 112 ---------------SS-------VEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (323)
Q Consensus 112 ---------------~~-------~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d 168 (323)
.. ++++.+..+ .+.|+|++...+++...+.+++++++|+++|.||++||.. .+.++
T Consensus 601 ~~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~~ 679 (1025)
T 1gte_A 601 GPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGERG 679 (1025)
T ss_dssp SSCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC---
T ss_pred CCchhheeeeccccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCC
Confidence 01 133444343 6789999777889999999999999999999999999973 11111
Q ss_pred HhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC----HHHHHHHHH
Q 020636 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQ 244 (323)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~----~e~a~~~~~ 244 (323)
+ +..+ ..++.+.++.++++++.+++||++|...+ .+.|+.+.+
T Consensus 680 ~---------------------------G~~~------~~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~~ 726 (1025)
T 1gte_A 680 M---------------------------GLAC------GQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKE 726 (1025)
T ss_dssp -----------------------------SBG------GGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHH
T ss_pred c---------------------------cccc------ccCHHHHHHHHHHHHHhhCCceEEEeCCChHHHHHHHHHHHH
Confidence 1 0000 12566778899999999999999997643 455899999
Q ss_pred cCCCEEEEcCC--------------------CCCCCCC--Ccc----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH
Q 020636 245 AGAAGIIVSNH--------------------GARQLDY--VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 298 (323)
Q Consensus 245 ~Gad~i~vs~~--------------------gg~~~~~--~~~----~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka 298 (323)
+|+|+|+++|+ |.+...+ +++ +++.+.++++.++ ++|||++|||+|++|+.++
T Consensus 727 ~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~-~ipvi~~GGI~s~~da~~~ 805 (1025)
T 1gte_A 727 GGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALP-GFPILATGGIDSAESGLQF 805 (1025)
T ss_dssp HTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHST-TCCEEEESSCCSHHHHHHH
T ss_pred cCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcC-CCCEEEecCcCCHHHHHHH
Confidence 99999999873 2221111 222 2578888888773 6999999999999999999
Q ss_pred HHcCCCEEEEccccccC
Q 020636 299 LALGASGIFVSIMPCQC 315 (323)
Q Consensus 299 l~lGAd~V~iG~~~~~~ 315 (323)
|++|||+|++||+++..
T Consensus 806 l~~Ga~~v~vg~~~l~~ 822 (1025)
T 1gte_A 806 LHSGASVLQVCSAVQNQ 822 (1025)
T ss_dssp HHTTCSEEEESHHHHTS
T ss_pred HHcCCCEEEEeeccccC
Confidence 99999999999999973
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-22 Score=184.78 Aligned_cols=214 Identities=16% Similarity=0.144 Sum_probs=157.9
Q ss_pred CccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCC-CC--------------------------
Q 020636 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-ST-------------------------- 111 (323)
Q Consensus 59 ~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~-s~-------------------------- 111 (323)
+|++++|+|.++++||++||+.. +. +....+.+.+.|+++++... +.
T Consensus 2 ~dl~~~i~g~~l~nPi~~Aag~~----~~--~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~ 75 (314)
T 2e6f_A 2 MCLKLNLLDHVFANPFMNAAGVL----CS--TEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN 75 (314)
T ss_dssp CCCCEEETTEEESSSEEECTTSS----CS--SHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred CCcceEECCEecCCCcEECCCCC----CC--CHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence 58999999999999999998432 22 23456778999998865421 11
Q ss_pred CCH----HHHHhc-C--CCceeEEeeecCChHHHHHHHHHHHHcCCc---EEEEecCCCCCCchHHHHhhccCCCCcccc
Q 020636 112 SSV----EEVAST-G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFK---AIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (323)
Q Consensus 112 ~~~----eei~~~-~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~---al~itvd~p~~g~r~~d~~~~~~~~~~~~~ 181 (323)
... +++.+. . ..+.+.|+. ..+.+...+.+++++++|++ ++.+|+.||.. .+.++
T Consensus 76 ~g~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g~~~------------- 140 (314)
T 2e6f_A 76 LGFDFYLKYASDLHDYSKKPLFLSIS-GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PGKPQ------------- 140 (314)
T ss_dssp SCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TTCCC-------------
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEeC-CCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CCchh-------------
Confidence 112 233332 1 357888986 46778888889999999999 89999999873 11000
Q ss_pred ccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc--CCHHH----HHHHHHcC-CCEEEEcC
Q 020636 182 KNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAG-AAGIIVSN 254 (323)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~----a~~~~~~G-ad~i~vs~ 254 (323)
+ ..+++..++.++++++.++.||++|.. .+.++ ++.+.++| +|+|+++|
T Consensus 141 ---------------------~---g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~ 196 (314)
T 2e6f_A 141 ---------------------V---AYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVN 196 (314)
T ss_dssp ---------------------G---GGSHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECC
T ss_pred ---------------------h---cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeC
Confidence 0 113444578899999998999999965 35555 78889999 99999998
Q ss_pred CCCC--CCC-----------------CC----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 255 HGAR--QLD-----------------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 255 ~gg~--~~~-----------------~~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
+.++ ..+ .+ +..++.+.++++.+ +++|||++|||+|++|+.+++++|||+|++||+
T Consensus 197 ~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~-~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~ 275 (314)
T 2e6f_A 197 SVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRC-PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTA 275 (314)
T ss_dssp CEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHH
T ss_pred CCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchh
Confidence 7631 010 01 22467888888887 589999999999999999999999999999999
Q ss_pred ccc-Ccch
Q 020636 312 PCQ-CPLT 318 (323)
Q Consensus 312 ~~~-~~~~ 318 (323)
++. .|++
T Consensus 276 ~l~~~p~~ 283 (314)
T 2e6f_A 276 LQEEGPGI 283 (314)
T ss_dssp HHHHCTTH
T ss_pred hHhcCcHH
Confidence 995 7754
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=180.27 Aligned_cols=213 Identities=19% Similarity=0.177 Sum_probs=156.6
Q ss_pred cceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCC-CC--------------------------
Q 020636 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-SS-------------------------- 113 (323)
Q Consensus 61 ~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~-~~-------------------------- 113 (323)
++++|+|.++++||++||... +. +....+.+.+.|..+++....+ .+
T Consensus 2 l~~~i~g~~l~npv~~Aag~~----~~--~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g 75 (311)
T 1jub_A 2 LNTTFANAKFANPFMNASGVH----CM--TIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECTTSS----CS--SHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred CceEECCEEcCCCcEECCCCC----CC--CHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence 678999999999999997321 22 3467788999999888754321 11
Q ss_pred H----HHHHh---cC--CCceeEEeeecCChHHHHHHHHHHHHcCCc-EEEEecCCCCCCchHHHHhhccCCCCcccccc
Q 020636 114 V----EEVAS---TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (323)
Q Consensus 114 ~----eei~~---~~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~-al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~ 183 (323)
. +++.. .. ..+.+.|+. ..+.+...+.+++++++|++ ++.+++.||.. .+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~-~g~~~--------------- 138 (311)
T 1jub_A 76 FDYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNV-PGEPQ--------------- 138 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS-SSCCC---------------
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC-CCccc---------------
Confidence 2 22322 12 357888986 46778888899999999999 99999999973 11000
Q ss_pred ccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccC--CHHH----HHHHHHcCCCEEEEcCCCC
Q 020636 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGA 257 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~--~~e~----a~~~~~~Gad~i~vs~~gg 257 (323)
+ ..+++..++.++++++.+++||++|... +.++ |+.+.++|+|+|+++|+.+
T Consensus 139 -------------------~---g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~ 196 (311)
T 1jub_A 139 -------------------L---AYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIG 196 (311)
T ss_dssp -------------------G---GGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEE
T ss_pred -------------------c---cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 0 1134445788999999989999999763 4333 7888899999999998752
Q ss_pred --CCCC--------------C---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 258 --RQLD--------------Y---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 258 --~~~~--------------~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
...+ + + +.+++.+.++++.+++++|||++|||+|++|+.+++++|||+|++||+|+.
T Consensus 197 ~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 197 NGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp EEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred cCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 1111 0 1 124677888887776689999999999999999999999999999999995
Q ss_pred -Ccch
Q 020636 315 -CPLT 318 (323)
Q Consensus 315 -~~~~ 318 (323)
.|++
T Consensus 277 ~~p~~ 281 (311)
T 1jub_A 277 EGPAI 281 (311)
T ss_dssp HCTHH
T ss_pred cCcHH
Confidence 7763
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=179.78 Aligned_cols=207 Identities=16% Similarity=0.202 Sum_probs=154.8
Q ss_pred cccceEECcccccccCCcHHHHHHHHHHHHcCC-ceeecCCCCCC------HHHHHhcC--CCceeEEeeecCChHHHHH
Q 020636 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTSS------VEEVASTG--PGIRFFQLYVYKDRNVVAQ 140 (323)
Q Consensus 70 ~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~-~~~vs~~s~~~------~eei~~~~--~~~~~~QLy~~~d~~~~~~ 140 (323)
+++||++|||++. ++..++..++++|. .++++++.+.. -+++.+.. +.+.++||+ ..+++.+.+
T Consensus 2 l~nriv~APM~g~------td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~p~~~~~ 74 (350)
T 3b0p_A 2 LDPRLSVAPMVDR------TDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLA-GSDPKSLAE 74 (350)
T ss_dssp CCCSEEECCCTTT------SSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHHHHHCCCGGGCSEEEEEE-CSCHHHHHH
T ss_pred CCCCEEECCCCCC------CHHHHHHHHHHcCCCCEEEeCCEEechhhcCCHHHHhccCCCCCeEEEEeC-CCCHHHHHH
Confidence 6789999999852 45678888889986 78888774321 12344333 268999998 578888899
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHH
Q 020636 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (323)
Q Consensus 141 ~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 220 (323)
.+++++++|++.|.|+++||..-.| ..++ ++.+ ..++.+..+.++.+
T Consensus 75 aA~~a~~~G~D~IeIn~gcP~~~~~----~d~~-----------------------G~~l------~~~~~~~~eiv~av 121 (350)
T 3b0p_A 75 AARIGEAFGYDEINLNLGCPSEKAQ----EGGY-----------------------GACL------LLDLARVREILKAM 121 (350)
T ss_dssp HHHHHHHTTCSEEEEEECCCSHHHH----HTTC-----------------------GGGG------GGCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCcCCCCcCc----CCCc-----------------------chhH------HhCHHHHHHHHHHH
Confidence 9999999999999999999973111 1111 1111 13566778889999
Q ss_pred HHhcCCCEEEeccC----------CHHHHHHHHHcCCCEEEEcCCCCCC-C------CCCcchHHHHHHHHHHhcCCCeE
Q 020636 221 QTITKLPILVKGVL----------TAEDARIAVQAGAAGIIVSNHGARQ-L------DYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 221 ~~~~~~pv~vK~i~----------~~e~a~~~~~~Gad~i~vs~~gg~~-~------~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
++.+++||++|... ..+.++.+.++|+|+|+|++....+ . ...+..++.+.++++.++ ++||
T Consensus 122 ~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~-~iPV 200 (350)
T 3b0p_A 122 GEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFP-QLTF 200 (350)
T ss_dssp HHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCT-TSEE
T ss_pred HHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCC-CCeE
Confidence 99899999998531 2455789999999999997532111 0 111346788999988764 6999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
|++|||+|++|+.++++ |||+|++||+++.+|++
T Consensus 201 ianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~l 234 (350)
T 3b0p_A 201 VTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPFV 234 (350)
T ss_dssp EEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGGG
T ss_pred EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcHH
Confidence 99999999999999998 99999999999999975
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=175.00 Aligned_cols=224 Identities=15% Similarity=0.058 Sum_probs=154.8
Q ss_pred ccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecCCCC----------------
Q 020636 49 RPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWST---------------- 111 (323)
Q Consensus 49 ~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~s~---------------- 111 (323)
.|+.-..+++.|++++++|.+|++||++|+=.. . .+....+.+..+|..++ +.+.+.
T Consensus 25 ~~~~~~~~~~~~L~~~~~Gl~~~NPv~lAAG~~----~--~~~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~ 98 (354)
T 4ef8_A 25 TGGQQMGRGSMSLQVNLLNNTFANPFMNAAGVM----C--TTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPL 98 (354)
T ss_dssp ---------CCCCCEEETTEEESSSEEECTTSS----C--SSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETT
T ss_pred CchhhcCCCCCCcceEECCEECCCCCEeccCCC----C--CCHHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecch
Confidence 455555678899999999999999999997211 1 23456788888888766 333221
Q ss_pred ----------CCH----HHHHhcC---CCceeEEeeecCChHHHHHHHHHHH---HcCCcEEEEecCCCCCCchHHHHhh
Q 020636 112 ----------SSV----EEVASTG---PGIRFFQLYVYKDRNVVAQLVRRAE---RAGFKAIALTVDTPRLGRREADIKN 171 (323)
Q Consensus 112 ----------~~~----eei~~~~---~~~~~~QLy~~~d~~~~~~~~~~a~---~~G~~al~itvd~p~~g~r~~d~~~ 171 (323)
..+ +++.+.. ..+.++||. ..+++...+.+++++ +.|+++|.||+.||...
T Consensus 99 ~~iN~~G~~n~G~~~~~~~l~~~~~~~~~pvivsI~-G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~-------- 169 (354)
T 4ef8_A 99 GSINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMS-GLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP-------- 169 (354)
T ss_dssp EEEECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST--------
T ss_pred hhhccCCCCCcCHHHHHHHHHHHhhcCCCcEEEEec-cCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC--------
Confidence 122 3344321 257899997 467888888888888 57899999999999731
Q ss_pred ccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccC--CHHH----HHHHHHc
Q 020636 172 RFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQA 245 (323)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~--~~e~----a~~~~~~ 245 (323)
+ .+ .+ +.+++...+.++++++.+++||++|... +.++ ++.+.++
T Consensus 170 ------g--g~--------------------~l--~~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~ 219 (354)
T 4ef8_A 170 ------G--KP--------------------QV--AYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEF 219 (354)
T ss_dssp ------T--SC--------------------CG--GGSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTC
T ss_pred ------C--ch--------------------hh--ccCHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhC
Confidence 0 00 00 1245556778999999999999999763 3332 3444578
Q ss_pred C-CCEEEEcCCCC---------CC-------CCCC-------cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 020636 246 G-AAGIIVSNHGA---------RQ-------LDYV-------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (323)
Q Consensus 246 G-ad~i~vs~~gg---------~~-------~~~~-------~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l 301 (323)
| +|+|+++|+.+ +. ..++ +.+++.+.++++.. +++|||++|||+|++|+.+++.+
T Consensus 220 Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~-~~ipII~~GGI~s~~da~~~l~a 298 (354)
T 4ef8_A 220 PKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFGCGGVYTGEDAFLHVLA 298 (354)
T ss_dssp TTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEEESCCCSHHHHHHHHHH
T ss_pred CCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhC-CCCCEEEECCcCCHHHHHHHHHc
Confidence 7 99999987541 10 0111 23578888888874 37999999999999999999999
Q ss_pred CCCEEEEccccccC-cch
Q 020636 302 GASGIFVSIMPCQC-PLT 318 (323)
Q Consensus 302 GAd~V~iG~~~~~~-~~~ 318 (323)
|||+|++||+++.. |++
T Consensus 299 GAd~V~vgra~l~~GP~~ 316 (354)
T 4ef8_A 299 GASMVQVGTALQEEGPSI 316 (354)
T ss_dssp TEEEEEECHHHHHHCTTH
T ss_pred CCCEEEEhHHHHHhCHHH
Confidence 99999999999886 653
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=172.13 Aligned_cols=216 Identities=19% Similarity=0.209 Sum_probs=151.4
Q ss_pred CCCCccceeecCcccccceEECc-ccccccCCcHHHHHHHHHHHHcCCceee-------------------------cCC
Q 020636 56 VSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAASAAGTIMTL-------------------------SSW 109 (323)
Q Consensus 56 ~~~~d~~t~i~g~~~~~Pi~iaP-m~~~~l~~~~~e~~~a~aa~~~G~~~~v-------------------------s~~ 109 (323)
.+++|++++|+|.++++||++|| |.+. .. .+.+.+.+.|..+++ +..
T Consensus 2 ~~~~~l~~~~~g~~l~npi~~aag~~~~--~~-----~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~ 74 (311)
T 1ep3_A 2 TENNRLSVKLPGLDLKNPIIPASGCFGF--GE-----EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAI 74 (311)
T ss_dssp CCCTTTCEEETTEEESSSEEECTTSSTT--ST-----TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECC
T ss_pred CCCCccceEECCEECCCCcEECCCCCCC--CH-----HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCccccccc
Confidence 36889999999999999999999 4332 11 233444344444443 121
Q ss_pred --CCCCHHHH--------HhcC-CCceeEEeeecCChHHHHHHHHHHHH-cCCcEEEEecCCCCCCchHHHHhhccCCCC
Q 020636 110 --STSSVEEV--------ASTG-PGIRFFQLYVYKDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (323)
Q Consensus 110 --s~~~~eei--------~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~-~G~~al~itvd~p~~g~r~~d~~~~~~~~~ 177 (323)
.+.+.+++ .+.. ..+.++||.. .+.+...+.++++++ +|++++.|++.||....| +.
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~-~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g------~~---- 143 (311)
T 1ep3_A 75 GLQNPGLEVIMTEKLPWLNENFPELPIIANVAG-SEEADYVAVCAKIGDAANVKAIELNISCPNVKHG------GQ---- 143 (311)
T ss_dssp CCCBCCHHHHHHTHHHHHHHHCTTSCEEEEECC-SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT------TE----
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCcEEEEEcC-CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCc------hh----
Confidence 12233332 2213 4678999974 467778888888888 899999999998862100 00
Q ss_pred ccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc---CC-HHHHHHHHHcCCCEEEEc
Q 020636 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV---LT-AEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i---~~-~e~a~~~~~~Gad~i~vs 253 (323)
. + ..++.+..+.++++++.++.||++|.. .+ .+.++.+.++|+|+|+++
T Consensus 144 ----------~--------------~---g~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~ 196 (311)
T 1ep3_A 144 ----------A--------------F---GTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMI 196 (311)
T ss_dssp ----------E--------------G---GGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEEC
T ss_pred ----------h--------------h---cCCHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEe
Confidence 0 0 113445678899999988999999965 23 455899999999999998
Q ss_pred C-------CCCCCC------C---CCcc----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 254 N-------HGARQL------D---YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 254 ~-------~gg~~~------~---~~~~----~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
| |+.+.. . .++. .++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||+|+
T Consensus 197 ~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~--~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l 274 (311)
T 1ep3_A 197 NTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANF 274 (311)
T ss_dssp CCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHH
T ss_pred CCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 7 321110 0 1121 246777777766 8999999999999999999999999999999999
Q ss_pred cCcch
Q 020636 314 QCPLT 318 (323)
Q Consensus 314 ~~~~~ 318 (323)
..|++
T Consensus 275 ~~p~~ 279 (311)
T 1ep3_A 275 ADPFV 279 (311)
T ss_dssp HCTTH
T ss_pred cCcHH
Confidence 88865
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=174.95 Aligned_cols=107 Identities=24% Similarity=0.319 Sum_probs=90.2
Q ss_pred ccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC------CCCcchHHHHHHHHHHhcC-CCe
Q 020636 211 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKATQG-RIP 282 (323)
Q Consensus 211 ~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~------~~~~~~~~~l~~i~~~~~~-~~p 282 (323)
...++.++++++.+ +++|+...+.|.+.++.+.++|||+|.|.-.+|.-. --+.|.+.++.++.++... .+|
T Consensus 307 ~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vp 386 (556)
T 4af0_A 307 VYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIP 386 (556)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCC
T ss_pred HHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCC
Confidence 34577899999988 689999999999999999999999999975555321 2356788888888776643 699
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 283 VFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 283 via~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
||+||||++..|++|||++|||+||+|++|.++.+
T Consensus 387 vIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt~E 421 (556)
T 4af0_A 387 CIADGGIGNIGHIAKALALGASAVMMGGLLAGTTE 421 (556)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred EEecCCcCcchHHHHHhhcCCCEEEEchhhccccC
Confidence 99999999999999999999999999999998754
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-19 Score=168.50 Aligned_cols=229 Identities=18% Similarity=0.162 Sum_probs=144.4
Q ss_pred ccccccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecCCCCCC----------
Q 020636 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSS---------- 113 (323)
Q Consensus 45 ~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~s~~~---------- 113 (323)
++.+.|+. .......++|+++|.+|++||++|+ |.. .+++ ......++|..++ +++.+..+
T Consensus 69 ~~~~~~~~-~~~~~~~l~v~~~Gl~f~NPvglAA-G~d----k~~~--~~~~l~~lGfG~vevgtvT~~pq~GNp~PRlf 140 (415)
T 3i65_A 69 KYNILPYD-TSNDSIYACTNIKHLDFINPFGVAA-GFD----KNGV--CIDSILKLGFSFIEIGTITPRGQTGNAKPRIF 140 (415)
T ss_dssp HTTCSCCC-CSCCCGGGCEEETTEEESSSEEECT-TSS----TTCS--SHHHHHTTTCSEEEEEEECSSCBCCSCSCCEE
T ss_pred HhcCCCcc-cccccccccEEECCEECCCCCEECC-CCC----CCHH--HHHHHHHcCCCeEEeCcccCCcCCCCCCCeEE
Confidence 34455542 2334566899999999999999997 222 2232 3466678887665 55543211
Q ss_pred ------------------H----HHHHhc---C-------CCceeEEeeecCC----hHHHHHHHHHHHHcCCcEEEEec
Q 020636 114 ------------------V----EEVAST---G-------PGIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTV 157 (323)
Q Consensus 114 ------------------~----eei~~~---~-------~~~~~~QLy~~~d----~~~~~~~~~~a~~~G~~al~itv 157 (323)
+ +++.+. . ..+..+||...++ .+...+.++++... ++.+.||+
T Consensus 141 rl~e~~aiiN~~GfnN~G~d~~~~~l~~~~~~~~~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNi 219 (415)
T 3i65_A 141 RDVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINV 219 (415)
T ss_dssp EEGGGTEEEECCCSCBCCHHHHHHHHHHHHHHHTTCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEEC
T ss_pred eccCCCceeecCCCCchhHHHHHHHHHHHHhhccccccccCceEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEEC
Confidence 1 122110 0 1234556643221 23334444444443 66677777
Q ss_pred CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh--------------
Q 020636 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI-------------- 223 (323)
Q Consensus 158 d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-------------- 223 (323)
.||... ++. . ..+++...+.++++++.
T Consensus 220 ScPNt~-----------------------------------Gl~-~---lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~ 260 (415)
T 3i65_A 220 SSPNTP-----------------------------------GLR-D---NQEAGKLKNIILSVKEEIDNLEKNNIMNDEF 260 (415)
T ss_dssp CCCC-----------------------------------------------CCHHHHHHHHHHHHHHHHHHHHCCSCHHH
T ss_pred CCCCCC-----------------------------------Ccc-c---ccCHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 766521 000 0 11333444556666654
Q ss_pred ------cCCC-EEEeccC--C----HHHHHHHHHcCCCEEEEcCCCCCCCC--------CC-------cchHHHHHHHHH
Q 020636 224 ------TKLP-ILVKGVL--T----AEDARIAVQAGAAGIIVSNHGARQLD--------YV-------PATIMALEEVVK 275 (323)
Q Consensus 224 ------~~~p-v~vK~i~--~----~e~a~~~~~~Gad~i~vs~~gg~~~~--------~~-------~~~~~~l~~i~~ 275 (323)
.+.| |+||... + .+.|+.+.++|+|+|+++|++..+.+ ++ +.+++.++++++
T Consensus 261 ~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~ 340 (415)
T 3i65_A 261 LWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYN 340 (415)
T ss_dssp HCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHH
T ss_pred cccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHH
Confidence 2689 8999763 3 23488899999999999998865432 21 235688999999
Q ss_pred HhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC-cc-hhhh
Q 020636 276 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC-PL-TEKI 321 (323)
Q Consensus 276 ~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~-~~-~~~~ 321 (323)
.+++++|||++|||+|++|+.+++++|||+|+|||+++.. |+ .++|
T Consensus 341 ~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i 388 (415)
T 3i65_A 341 YTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQI 388 (415)
T ss_dssp HTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHH
T ss_pred HhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHH
Confidence 8877899999999999999999999999999999999865 54 3443
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=164.05 Aligned_cols=237 Identities=20% Similarity=0.162 Sum_probs=149.9
Q ss_pred chHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecCCC
Q 020636 32 DQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWS 110 (323)
Q Consensus 32 ~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~s 110 (323)
-|.+++--..++.. .+.|+. +..++.+++++++|.+|++||++|+ |. ..+++ ..+...++|.+++ +.+.+
T Consensus 23 pe~ah~~~~~~l~~-~~~~~~-~~~~~~~L~~~~~Gl~~~NPvglAa-G~----~~~~~--~~~~~~~~g~G~v~~ktvt 93 (367)
T 3zwt_A 23 PESAHRLAVRFTSL-GLLPRA-RFQDSDMLEVRVLGHKFRNPVGIAA-GF----DKHGE--AVDGLYKMGFGFVEIGSVT 93 (367)
T ss_dssp HHHHHHHHHHHHHT-TCC----CCCCCGGGCEEETTEEESSSEEECT-TS----STTSS--SHHHHHHTTCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHh-cccccc-ccCCCCCCcEEECCEEcCCCCEeCC-Cc----CCCHH--HHHHHHhcCcCeEEeCCcc
Confidence 34444444444442 345542 3356788999999999999999996 22 22333 3344455677666 33432
Q ss_pred C----------------------------CC----HHHHHhc---------CCCceeEEeeecC----ChHHHHHHHHHH
Q 020636 111 T----------------------------SS----VEEVAST---------GPGIRFFQLYVYK----DRNVVAQLVRRA 145 (323)
Q Consensus 111 ~----------------------------~~----~eei~~~---------~~~~~~~QLy~~~----d~~~~~~~~~~a 145 (323)
. .. ++++.+. ...+.++||..++ +.+...+.++++
T Consensus 94 ~~pq~GNp~PR~~~~~~~~~~iN~~G~~N~G~~~~~~~l~~~~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~ 173 (367)
T 3zwt_A 94 PKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVL 173 (367)
T ss_dssp SSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCeEEEecCccceeeccCCCCccHHHHHHHHHHHhhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHH
Confidence 1 11 2233321 1246889986432 234444444444
Q ss_pred HHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh--
Q 020636 146 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI-- 223 (323)
Q Consensus 146 ~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-- 223 (323)
.. +++++.||+.||... + .+. ..+++...+.++.+++.
T Consensus 174 ~~-~ad~ielNisCPn~~--------------G--~~~-----------------------l~~~~~l~~ll~av~~~~~ 213 (367)
T 3zwt_A 174 GP-LADYLVVNVSSPNTA--------------G--LRS-----------------------LQGKAELRRLLTKVLQERD 213 (367)
T ss_dssp GG-GCSEEEEECCCTTST--------------T--GGG-----------------------GGSHHHHHHHHHHHHHHHH
T ss_pred hh-hCCEEEEECCCCCCC--------------C--ccc-----------------------cCCHHHHHHHHHHHHHHHh
Confidence 33 478999999999731 0 000 01222233455555543
Q ss_pred -----cCCCEEEeccC--CH----HHHHHHHHcCCCEEEEcCCC-CCC---------CCCC-------cchHHHHHHHHH
Q 020636 224 -----TKLPILVKGVL--TA----EDARIAVQAGAAGIIVSNHG-ARQ---------LDYV-------PATIMALEEVVK 275 (323)
Q Consensus 224 -----~~~pv~vK~i~--~~----e~a~~~~~~Gad~i~vs~~g-g~~---------~~~~-------~~~~~~l~~i~~ 275 (323)
+++||++|... +. +.|+.+.++|+|+|+++|+. ++. ..++ +.+++.+.++++
T Consensus 214 ~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~ 293 (367)
T 3zwt_A 214 GLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYA 293 (367)
T ss_dssp TSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHH
T ss_pred hccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHH
Confidence 68999999763 32 34788899999999999876 221 0121 124688999999
Q ss_pred HhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc-cCcc
Q 020636 276 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC-QCPL 317 (323)
Q Consensus 276 ~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~-~~~~ 317 (323)
.+++++|||++|||+|++|+.+++++|||+|++||+++ ..|+
T Consensus 294 ~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~ 336 (367)
T 3zwt_A 294 LTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPP 336 (367)
T ss_dssp HTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTH
T ss_pred HcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcH
Confidence 98778999999999999999999999999999999995 3354
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=164.08 Aligned_cols=215 Identities=14% Similarity=0.100 Sum_probs=152.9
Q ss_pred CccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCC--------------------------
Q 020636 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST-------------------------- 111 (323)
Q Consensus 59 ~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~-------------------------- 111 (323)
.|++++++|.+|++||++|+ |.. . .+....+.+..+|..+++. +.+.
T Consensus 36 ~~L~~~~~Gl~~~NPv~lAa-G~~----~-~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n 109 (345)
T 3oix_A 36 VSTHTTIGSFDFDNCLMNAA-GVY----C-MTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPN 109 (345)
T ss_dssp CCCCEEETTEEESCSEEECT-TSS----C-SSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCB
T ss_pred CCcCeEECCEECCCCCEEcC-CCC----C-CCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCC
Confidence 58999999999999999996 221 1 1335778888999877744 3321
Q ss_pred CC----HHHHHhc----CCCceeEEeeecCChHHHHHHHHHHHHcCCc-EEEEecCCCCCCchHHHHhhccCCCCccccc
Q 020636 112 SS----VEEVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (323)
Q Consensus 112 ~~----~eei~~~----~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~-al~itvd~p~~g~r~~d~~~~~~~~~~~~~~ 182 (323)
.. ++++.+. ...+.++||. ..+++...+.+++++++|+. +|.||+.||... +. +
T Consensus 110 ~G~~~~~~~l~~~~~~~~~~pvivsI~-g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~--------G~--------~ 172 (345)
T 3oix_A 110 LGINYYLDYVTELQKQPDSKNHFLSLV-GMSPEETHTILXMVEASKYQGLVELNLSCPNVP--------GX--------P 172 (345)
T ss_dssp SCHHHHHHHHHHHHHSTTCCCCEEEEC-CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST--------TC--------C
T ss_pred hhHHHHHHHHHHHhhccCCCCEEEEec-CCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC--------Cc--------h
Confidence 11 2334331 2367899997 46788888899999989987 999999999731 00 0
Q ss_pred cccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccC--C-HHHHHHHHHcCCCEEEEcCC----
Q 020636 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--T-AEDARIAVQAGAAGIIVSNH---- 255 (323)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~--~-~e~a~~~~~~Gad~i~vs~~---- 255 (323)
. + ..+++...+.++++++.+++||++|... + .+.++.+.++|+++|.+.|.
T Consensus 173 ~-------------------l---~~~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~~a~~~~~aga~~i~~int~nt~ 230 (345)
T 3oix_A 173 Q-------------------I---AYDFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSI 230 (345)
T ss_dssp C-------------------G---GGCHHHHHHHHHHHTTTCCSCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEECCCE
T ss_pred h-------------------h---cCCHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHhCCCceEEEEeeccc
Confidence 0 0 1244455678899999889999999763 3 45577888888887753221
Q ss_pred -------CCC-CC-----CC---Ccc----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc-ccc
Q 020636 256 -------GAR-QL-----DY---VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM-PCQ 314 (323)
Q Consensus 256 -------gg~-~~-----~~---~~~----~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~-~~~ 314 (323)
..+ .+ .+ +++ +++.+.++++.+++++|||++|||+|++|+.+++++|||+|++||+ ++.
T Consensus 231 g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~ 310 (345)
T 3oix_A 231 GNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQE 310 (345)
T ss_dssp EEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH
T ss_pred ccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhc
Confidence 111 01 01 122 3678888888886689999999999999999999999999999999 566
Q ss_pred Ccch
Q 020636 315 CPLT 318 (323)
Q Consensus 315 ~~~~ 318 (323)
.|++
T Consensus 311 gP~~ 314 (345)
T 3oix_A 311 GPQI 314 (345)
T ss_dssp CTHH
T ss_pred ChHH
Confidence 6654
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=186.53 Aligned_cols=240 Identities=17% Similarity=0.115 Sum_probs=156.9
Q ss_pred Hhhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH
Q 020636 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (323)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~ 118 (323)
-.|+++.+.+..+. +++++++++ ++..||+++||+++.+ +++...++|++|+++|+.+.+++.. .+.++..
T Consensus 823 ~~~~dl~~~~~~l~~i~~~ev~~~~-----~I~~Pf~isaMS~Gal-S~ea~~aLA~Aa~~aGg~~~tGeGg-~~pe~~~ 895 (1479)
T 1ea0_A 823 MQLRDLLELRSTKAPVPVDEVESIT-----AIRKRFITPGMSMGAL-SPEAHGTLNVAMNRIGAKSDSGEGG-EDPARFR 895 (1479)
T ss_dssp CSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEEEEECCBTTB-CHHHHHHHHHHHHHTTCEEECCTTC-CCGGGSS
T ss_pred CchhhhhhccCCCCCCCcccccccc-----cccCCeEecCcccccc-CHHHHHHHHHHHHHcCCeeEcCCCc-cCHHHhh
Confidence 35777776665543 345666555 6789999999998654 5678889999999999999999853 3444432
Q ss_pred hcC----CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC----C----chHH-HHhhccCCCCcccccccc
Q 020636 119 STG----PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL----G----RREA-DIKNRFTLPPFLTLKNFQ 185 (323)
Q Consensus 119 ~~~----~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~----g----~r~~-d~~~~~~~~~~~~~~~~~ 185 (323)
... ....+.|+.. .........+ ..++++-|.+..-.. | .+.. .+..-..+++++.
T Consensus 896 ~~~~g~~~~~~IrQ~as-g~FGVn~~~l-----~~a~~ieIKigQGAKpG~GG~Lp~~kv~~~IA~~R~~~~Gv~----- 964 (1479)
T 1ea0_A 896 PDKNGDNWNSAIKQVAS-GRFGVTAEYL-----NQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVM----- 964 (1479)
T ss_dssp BCTTSCBCCCSEEEECS-SCTTCCHHHH-----TSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCC-----
T ss_pred hccccchhhhhhhhhcC-CCCCcChHHc-----cccchHHHHHhccCCCCcCCCCCHHHHHHHHHHHcCCCCCCC-----
Confidence 110 1235677753 2222211222 356677777632211 0 0000 0000000111111
Q ss_pred ccccCCCccccchhhHHHHhhccCCcc-CH----HHHHHHHHhc-CCCEEEeccC---CHHHHHHHHHcCCCEEEEcCCC
Q 020636 186 GLDLGKMDEANDSGLAAYVAGQIDRSL-SW----KDVKWLQTIT-KLPILVKGVL---TAEDARIAVQAGAAGIIVSNHG 256 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~i~~i~~~~-~~pv~vK~i~---~~e~a~~~~~~Gad~i~vs~~g 256 (323)
.+++..++++ ++ +.|+++|+.+ +.||++|++. ..++|+.+.++|||+|+|+||+
T Consensus 965 -----------------lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~e 1027 (1479)
T 1ea0_A 965 -----------------LISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNS 1027 (1479)
T ss_dssp -----------------EECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTT
T ss_pred -----------------ccCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCC
Confidence 0111122332 33 4588899988 7899999885 4678999999999999999995
Q ss_pred C-CC-------CCCCcchHHHHHHHHHHh-----cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 257 A-RQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 257 g-~~-------~~~~~~~~~~l~~i~~~~-----~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
| +. .+.+.|+...|+++.+.+ ++++|||++|||+++.|++|++++||++|++||+|+.+
T Consensus 1028 GGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a 1099 (1479)
T 1ea0_A 1028 GGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIA 1099 (1479)
T ss_dssp CCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHH
T ss_pred CCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHH
Confidence 4 31 134567788999998875 34799999999999999999999999999999999654
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-18 Score=165.97 Aligned_cols=98 Identities=23% Similarity=0.273 Sum_probs=78.6
Q ss_pred cCCC-EEEeccC--CHHH----HHHHHHcCCCEEEEcCCCCCCCC--------CC-------cchHHHHHHHHHHhcCCC
Q 020636 224 TKLP-ILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLD--------YV-------PATIMALEEVVKATQGRI 281 (323)
Q Consensus 224 ~~~p-v~vK~i~--~~e~----a~~~~~~Gad~i~vs~~gg~~~~--------~~-------~~~~~~l~~i~~~~~~~~ 281 (323)
.+.| |++|... +.++ |+.+.++|+|+|+++|++..+.+ ++ +.+++.++++++.+++++
T Consensus 295 ~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~i 374 (443)
T 1tv5_A 295 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQI 374 (443)
T ss_dssp SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCC
Confidence 4689 9999763 3334 88999999999999998764332 11 124678889998887689
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEcccccc-Cc-chhhh
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ-CP-LTEKI 321 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~-~~-~~~~~ 321 (323)
|||++|||+|++|+.++|++|||+|++||+|+. .| +.++|
T Consensus 375 PVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~gP~l~~~i 416 (443)
T 1tv5_A 375 PIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQI 416 (443)
T ss_dssp CEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHH
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcChHHHHHH
Confidence 999999999999999999999999999999875 66 44444
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=164.56 Aligned_cols=105 Identities=26% Similarity=0.292 Sum_probs=88.9
Q ss_pred CHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC------CCCcchHHHHHHHHHHhcC-CCeEE
Q 020636 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKATQG-RIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~------~~~~~~~~~l~~i~~~~~~-~~pvi 284 (323)
.++.++++++.++ .|++++.+.+.++|+.+.++|+|+|+++.++|... ..+.+.+..+.++.+.++. ++|||
T Consensus 284 v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVI 363 (511)
T 3usb_A 284 VIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVI 363 (511)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEE
T ss_pred hhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEE
Confidence 4678999999985 79999999999999999999999999965554321 2346788888888766542 69999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
++|||+++.|+.||+++||++|++|++|+++.+
T Consensus 364 a~GGI~~~~di~kala~GA~~V~vGs~~~~~~e 396 (511)
T 3usb_A 364 ADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAE 396 (511)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred EeCCCCCHHHHHHHHHhCchhheecHHHhcCcc
Confidence 999999999999999999999999999988754
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=161.75 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=90.3
Q ss_pred cCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC------CCCCcchHHHHHHHHHHhcC-CCeE
Q 020636 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~~pv 283 (323)
..++.++++++.+ +.|++++.+.+.++|+.+.++|||+|+++..+|.. ...+.+.++.+.++.+.++. ++||
T Consensus 256 ~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPV 335 (490)
T 4avf_A 256 GVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPL 335 (490)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCE
T ss_pred hHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcE
Confidence 4467899999998 68999998999999999999999999996544432 12346788999999887632 6999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
|++|||+++.|+.|++++||++|++|++|+++.+
T Consensus 336 Ia~GGI~~~~di~kal~~GAd~V~vGs~~~~~~E 369 (490)
T 4avf_A 336 IADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEE 369 (490)
T ss_dssp EEESCCCSHHHHHHHHHHTCSEEEECTTTTTBTT
T ss_pred EEeCCCCCHHHHHHHHHcCCCeeeecHHHhcCCC
Confidence 9999999999999999999999999999998664
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-17 Score=152.71 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=138.7
Q ss_pred eeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH-------HHhcCCCceeEEeeecC--
Q 020636 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYK-- 133 (323)
Q Consensus 63 t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee-------i~~~~~~~~~~QLy~~~-- 133 (323)
+++++ ++.||+.+||++ +.+ ..++.++.++|...++...+..+.++ +++..+.++.++++...
T Consensus 9 ~~~l~--~~~Pii~apM~g--vs~----~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~ 80 (328)
T 2gjl_A 9 TETFG--VEHPIMQGGMQW--VGR----AEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQ 80 (328)
T ss_dssp HHHHT--CSSSEEECCCTT--TCS----HHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCS
T ss_pred HHHhC--CCCCEEECCCCC--CCc----HHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 34554 468999999965 344 37999999999766665433222333 22223356788888741
Q ss_pred -ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 134 -DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 134 -d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
++. ..+.++.+.+.|++.+.++.++|
T Consensus 81 ~~~~-~~~~~~~~~~~g~d~V~~~~g~p---------------------------------------------------- 107 (328)
T 2gjl_A 81 KPVP-YAEYRAAIIEAGIRVVETAGNDP---------------------------------------------------- 107 (328)
T ss_dssp SCCC-HHHHHHHHHHTTCCEEEEEESCC----------------------------------------------------
T ss_pred cCcc-HHHHHHHHHhcCCCEEEEcCCCc----------------------------------------------------
Confidence 122 35667888889999888765432
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
++.++++++. ++|++.+ +.+.++++.+.+.|+|+|++++. ||+......++++.++++++.+ ++|||++|||+
T Consensus 108 -~~~~~~l~~~-gi~vi~~-v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~--~iPviaaGGI~ 182 (328)
T 2gjl_A 108 -GEHIAEFRRH-GVKVIHK-CTAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL--RVPIIASGGFA 182 (328)
T ss_dssp -HHHHHHHHHT-TCEEEEE-ESSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC--CSCEEEESSCC
T ss_pred -HHHHHHHHHc-CCCEEee-CCCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc--CCCEEEECCCC
Confidence 3345666664 7777754 78899999999999999999763 3332111346888999988776 89999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+++|+.+++++|||+|++||+|+.+++
T Consensus 183 ~~~~v~~al~~GAdgV~vGs~~~~~~e 209 (328)
T 2gjl_A 183 DGRGLVAALALGADAINMGTRFLATRE 209 (328)
T ss_dssp SHHHHHHHHHHTCSEEEESHHHHTSSS
T ss_pred CHHHHHHHHHcCCCEEEECHHHHcCcc
Confidence 999999999999999999999999887
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=162.69 Aligned_cols=106 Identities=27% Similarity=0.305 Sum_probs=89.8
Q ss_pred cCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC------CCCcchHHHHHHHHHHhcC-CCeE
Q 020636 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKATQG-RIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~------~~~~~~~~~l~~i~~~~~~-~~pv 283 (323)
..++.++++++.+ +.||+++.+.+.++|+.+.++|+|+|++++..|... ..+.+.+..+.++.+.+.. ++||
T Consensus 258 ~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPV 337 (496)
T 4fxs_A 258 GVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPV 337 (496)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCE
T ss_pred HHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeE
Confidence 3467899999998 789999999999999999999999999975444221 2246788888998886632 6999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
|++|||+++.|+.|++++|||+|++|++|+++.+
T Consensus 338 Ia~GGI~~~~di~kala~GAd~V~iGs~f~~t~E 371 (496)
T 4fxs_A 338 IADGGIRFSGDISKAIAAGASCVMVGSMFAGTEE 371 (496)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred EEeCCCCCHHHHHHHHHcCCCeEEecHHHhcCCC
Confidence 9999999999999999999999999999998764
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=155.73 Aligned_cols=184 Identities=21% Similarity=0.236 Sum_probs=136.9
Q ss_pred ecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH-------HHhcCCCceeEEeeecCChHH
Q 020636 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYKDRNV 137 (323)
Q Consensus 65 i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee-------i~~~~~~~~~~QLy~~~d~~~ 137 (323)
++| ++.||+.+||++ +.++ .++.++.++|...++... ..+.++ +.+..+.++.+|++.. ++.
T Consensus 8 ~l~--~~~Pii~apM~g--~s~~----~la~av~~aG~lG~i~~~-~~~~~~~~~~i~~i~~~~~~p~gvnl~~~-~~~- 76 (332)
T 2z6i_A 8 LLK--IDYPIFQGGMAW--VADG----DLAGAVSKAGGLGIIGGG-NAPKEVVKANIDKIKSLTDKPFGVNIMLL-SPF- 76 (332)
T ss_dssp HHT--CSSSEEECCCTT--TCCH----HHHHHHHHHTSBEEEECT-TCCHHHHHHHHHHHHHHCCSCEEEEECTT-STT-
T ss_pred HhC--CCCCEEeCCCCC--CCcH----HHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEecCC-CCC-
Confidence 455 679999999984 3443 688999999975555432 123333 2222345788998752 332
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..+.++.+.+.|++.+.++.++|. +.+
T Consensus 77 ~~~~~~~a~~~g~d~V~~~~g~p~-----------------------------------------------------~~i 103 (332)
T 2z6i_A 77 VEDIVDLVIEEGVKVVTTGAGNPS-----------------------------------------------------KYM 103 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCGG-----------------------------------------------------GTH
T ss_pred HHHHHHHHHHCCCCEEEECCCChH-----------------------------------------------------HHH
Confidence 356778888999999887654331 134
Q ss_pred HHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 218 KWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
+++++ .+.|+++| +.+.++++.+.+.|+|+|++++. ||+. +..++++.++++++.+ ++|||++|||.+++++
T Consensus 104 ~~l~~-~g~~v~~~-v~~~~~a~~~~~~GaD~i~v~g~~~GG~~--g~~~~~~ll~~i~~~~--~iPViaaGGI~~~~~~ 177 (332)
T 2z6i_A 104 ERFHE-AGIIVIPV-VPSVALAKRMEKIGADAVIAEGMEAGGHI--GKLTTMTLVRQVATAI--SIPVIAAGGIADGEGA 177 (332)
T ss_dssp HHHHH-TTCEEEEE-ESSHHHHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSCCSHHHH
T ss_pred HHHHH-cCCeEEEE-eCCHHHHHHHHHcCCCEEEEECCCCCCCC--CCccHHHHHHHHHHhc--CCCEEEECCCCCHHHH
Confidence 45555 47888887 57899999999999999999764 3332 2356789999999887 8999999999999999
Q ss_pred HHHHHcCCCEEEEccccccCcch
Q 020636 296 FKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 296 ~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
.+++++|||+|++||+|+.+|+.
T Consensus 178 ~~al~~GAdgV~vGs~~l~~~e~ 200 (332)
T 2z6i_A 178 AAGFMLGAEAVQVGTRFVVAKES 200 (332)
T ss_dssp HHHHHTTCSEEEECHHHHTBTTC
T ss_pred HHHHHcCCCEEEecHHHhcCccc
Confidence 99999999999999999998864
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=179.86 Aligned_cols=237 Identities=17% Similarity=0.126 Sum_probs=152.5
Q ss_pred Hhhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH
Q 020636 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (323)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~ 118 (323)
-.|+++.+.+..+. +++++++.+ ++..||+++||+++.+ .++...++|.+|.++|+.+++++... +.+++.
T Consensus 840 ~~~r~l~~~~~~~~~i~~~ev~~~~-----~I~~Pfii~aMS~Gsl-S~ea~~aLA~Aas~aGg~~~tGeGg~-~pe~~~ 912 (1520)
T 1ofd_A 840 TALRDLLDFNADQPAISLEEVESVE-----SIVKRFCTGGMSLGAL-SREAHETLAIAMNRLGAKSNSGEGGE-DVVRYL 912 (1520)
T ss_dssp CSGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEECCCBCTTTS-CHHHHHHHHHHHHHHTCBCEECTTCC-CGGGGS
T ss_pred cchhhhccccCCCCCCCchhhcccc-----cccCceEecCcCcccc-cHHHHHHHHHHHHHcCCceEeCCCCC-CHHHHH
Confidence 34666666554442 334555544 5689999999998653 56788899999999999999998643 334332
Q ss_pred -----------hcCC-----------CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC----Cc----h---
Q 020636 119 -----------STGP-----------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL----GR----R--- 165 (323)
Q Consensus 119 -----------~~~~-----------~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~----g~----r--- 165 (323)
..+| ...+.|+-. ..-....+.+. .++.+-+.+..-.. |. +
T Consensus 913 ~eir~~~~~~~~~~p~~~~~~nG~~~~~~I~Ql~s-g~FGVn~~~l~-----~ad~IeIKi~QGAKpG~GG~Lp~~kV~~ 986 (1520)
T 1ofd_A 913 TLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIAS-GRFGVTPEYLM-----SGKQLEIKMAQGAKPGEGGQLPGKKVSE 986 (1520)
T ss_dssp CCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEEECT-TCTTCCHHHHH-----HCSEEEEECCCTTSTTSCCEECGGGCCH
T ss_pred hhhccccccccccccccccccCcchHHHHHHHhcC-CCCccChhhcc-----chHHHHHHHhccCCCCCCCCCCHHHHHH
Confidence 0111 125777721 11111111221 25667666532211 00 0
Q ss_pred -HHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc-CH----HHHHHHHHhc-CCCEEEeccC---C
Q 020636 166 -EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW----KDVKWLQTIT-KLPILVKGVL---T 235 (323)
Q Consensus 166 -~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~i~~i~~~~-~~pv~vK~i~---~ 235 (323)
...+| .+++++. .+++..++++ ++ +.|+++|+.+ +.||++|.+. .
T Consensus 987 ~iA~~R---~~~~Gv~----------------------lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi 1041 (1520)
T 1ofd_A 987 YIAMLR---RSKPGVT----------------------LISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGI 1041 (1520)
T ss_dssp HHHHHH---TSCTTCC----------------------EECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTH
T ss_pred HHHHHc---CCCCCCC----------------------eeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecCCCCh
Confidence 00011 0111111 1111122333 23 4688899988 7899999885 4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCC--------CCCCcchHHHHHHHHHHh-----cCCCeEEEecCCCCHHHHHHHHHcC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQ--------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALG 302 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~--------~~~~~~~~~~l~~i~~~~-----~~~~pvia~GGI~~~~di~kal~lG 302 (323)
.++|+.+.++|||+|+|+||+|.. .+.+.|+...|+++.+.+ ++++|||++|||+++.|++||+++|
T Consensus 1042 ~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLG 1121 (1520)
T 1ofd_A 1042 GTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMG 1121 (1520)
T ss_dssp HHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcC
Confidence 678999999999999999996432 134567788899988765 3379999999999999999999999
Q ss_pred CCEEEEccccccC
Q 020636 303 ASGIFVSIMPCQC 315 (323)
Q Consensus 303 Ad~V~iG~~~~~~ 315 (323)
|++|++||+|+.+
T Consensus 1122 AdaV~iGTafL~a 1134 (1520)
T 1ofd_A 1122 AEEYGFGSIAMIA 1134 (1520)
T ss_dssp CSEEECSHHHHHH
T ss_pred CCeeEEcHHHHHH
Confidence 9999999998654
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=152.17 Aligned_cols=207 Identities=22% Similarity=0.213 Sum_probs=130.1
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHH-------HhcCCCceeEEeeecCCh----HHHH
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDR----NVVA 139 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei-------~~~~~~~~~~QLy~~~d~----~~~~ 139 (323)
+.||+.+||++ ++..+ .++.++.++|...+++.. ..+.+++ .+..+.++.+|++...+. +...
T Consensus 10 ~~Pii~apMag-gvs~~----~la~av~~aGglG~i~~~-~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~ 83 (369)
T 3bw2_A 10 PLPIVQAPMAG-GVSVP----QLAAAVCEAGGLGFLAAG-YKTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVE 83 (369)
T ss_dssp SSSEEECCCTT-TTSCH----HHHHHHHHTTSBEEEECT-TSCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHH
T ss_pred cCCEEeCCCCC-CCCcH----HHHHHHHHCCCEEEcCCC-CCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHH
Confidence 79999999985 23344 799999999987777642 2334433 222345778888764331 2222
Q ss_pred HHH----HHHHHcCCcEEEEecCCCCCCch---HHHHhhccCCCCccccccccccccCCCccccchhhHHHHh-hccCCc
Q 020636 140 QLV----RRAERAGFKAIALTVDTPRLGRR---EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA-GQIDRS 211 (323)
Q Consensus 140 ~~~----~~a~~~G~~al~itvd~p~~g~r---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 211 (323)
+.+ ..+++.|.. ++.|....+ +..++.-... +.. .+. ....
T Consensus 84 ~~~~~l~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~--g~~----------------------~V~~~~g~-- 132 (369)
T 3bw2_A 84 VYAHQLAGEAAWYETE-----LGDPDGGRDDGYDAKLAVLLDD--PVP----------------------VVSFHFGV-- 132 (369)
T ss_dssp HHHHHTHHHHHHTTCC-----CCCSCSCSSTTHHHHHHHHHHS--CCS----------------------EEEEESSC--
T ss_pred HHHHHHHHHHHHcCCC-----cCcccccccccHHHHHHHHHhc--CCC----------------------EEEEeCCC--
Confidence 222 233444543 222321100 0001000000 000 000 0011
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC--CC---CCCCCC------cchHHHHHHHHHHhcCC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GA---RQLDYV------PATIMALEEVVKATQGR 280 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~--gg---~~~~~~------~~~~~~l~~i~~~~~~~ 280 (323)
..++.++++++. +.|+++ .+.+.++++.+.+.|+|+|++++. || +..+.. ...++.++++++.+ +
T Consensus 133 ~~~~~i~~~~~~-g~~v~~-~v~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~--~ 208 (369)
T 3bw2_A 133 PDREVIARLRRA-GTLTLV-TATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV--D 208 (369)
T ss_dssp CCHHHHHHHHHT-TCEEEE-EESSHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC--S
T ss_pred CcHHHHHHHHHC-CCeEEE-ECCCHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc--C
Confidence 246778888774 676655 467899999999999999999763 22 221111 23488899988877 8
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 281 IPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 281 ~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+|||++|||.+++++.+++++|||+|++||.|+.+|+.
T Consensus 209 iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~ 246 (369)
T 3bw2_A 209 IPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDES 246 (369)
T ss_dssp SCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTC
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccc
Confidence 99999999999999999999999999999999998875
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-17 Score=159.05 Aligned_cols=109 Identities=22% Similarity=0.328 Sum_probs=93.1
Q ss_pred CccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC-----CC-CCcchHHHHHHHHHHhcC-CC
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----LD-YVPATIMALEEVVKATQG-RI 281 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~-----~~-~~~~~~~~l~~i~~~~~~-~~ 281 (323)
+...|+.++++++.+ +.|++++++.+.++++.+.++|+|+|++++++|.. .+ .+.+....++++.+.++. ++
T Consensus 262 ~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~i 341 (494)
T 1vrd_A 262 SRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDV 341 (494)
T ss_dssp SHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCC
Confidence 344688999999999 69999999999999999999999999999887631 11 245678888888776543 79
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
|||++|||+++.|+.|+|++|||+|++||+|+.+|+.
T Consensus 342 pvia~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~ 378 (494)
T 1vrd_A 342 PIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEA 378 (494)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTS
T ss_pred CEEEECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcC
Confidence 9999999999999999999999999999999987654
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=148.23 Aligned_cols=190 Identities=21% Similarity=0.263 Sum_probs=137.3
Q ss_pred ccceeecC-cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHH-------HhcCCCceeEEeee
Q 020636 60 DMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYV 131 (323)
Q Consensus 60 d~~t~i~g-~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei-------~~~~~~~~~~QLy~ 131 (323)
.++|.+.. ..++.||+.+||++ +.++ .++.++.++|...+++.. ..+.+++ .+....++.+++..
T Consensus 14 ~~~t~~~~~l~~~~Pii~apM~g--vs~~----~la~av~~aGglG~i~~~-~~~~~~l~~~i~~i~~~~~~p~gVnl~~ 86 (326)
T 3bo9_A 14 TVRTRVTDLLEIEHPILMGGMAW--AGTP----TLAAAVSEAGGLGIIGSG-AMKPDDLRKAISELRQKTDKPFGVNIIL 86 (326)
T ss_dssp CCCCHHHHHHTCSSSEEECCCTT--TSCH----HHHHHHHHTTSBEEEECT-TCCHHHHHHHHHHHHTTCSSCEEEEEET
T ss_pred eecchhHHhcCCCCCEEECCCCC--CCCH----HHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 33444332 35679999999985 3444 799999999976666532 2233332 22223467788765
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
. ++. ..+.++.+.+.|++.+.++.++|
T Consensus 87 ~-~~~-~~~~~~~~~~~g~d~V~l~~g~p--------------------------------------------------- 113 (326)
T 3bo9_A 87 V-SPW-ADDLVKVCIEEKVPVVTFGAGNP--------------------------------------------------- 113 (326)
T ss_dssp T-STT-HHHHHHHHHHTTCSEEEEESSCC---------------------------------------------------
T ss_pred c-CCC-HHHHHHHHHHCCCCEEEECCCCc---------------------------------------------------
Confidence 2 222 34667778889999888765433
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC--CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
.+.++++++ .+.++++ .+.+.++++.+.+.|+|+|++++ +||+. +..++++.++++.+.+ ++|||++|||
T Consensus 114 --~~~~~~l~~-~g~~v~~-~v~s~~~a~~a~~~GaD~i~v~g~~~GG~~--G~~~~~~ll~~i~~~~--~iPviaaGGI 185 (326)
T 3bo9_A 114 --TKYIRELKE-NGTKVIP-VVASDSLARMVERAGADAVIAEGMESGGHI--GEVTTFVLVNKVSRSV--NIPVIAAGGI 185 (326)
T ss_dssp --HHHHHHHHH-TTCEEEE-EESSHHHHHHHHHTTCSCEEEECTTSSEEC--CSSCHHHHHHHHHHHC--SSCEEEESSC
T ss_pred --HHHHHHHHH-cCCcEEE-EcCCHHHHHHHHHcCCCEEEEECCCCCccC--CCccHHHHHHHHHHHc--CCCEEEECCC
Confidence 123455555 3666654 56899999999999999999987 45532 2356889999998887 8999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
++++|+.+++++||++|++||+|+.+++
T Consensus 186 ~~~~dv~~al~~GA~gV~vGs~~~~~~e 213 (326)
T 3bo9_A 186 ADGRGMAAAFALGAEAVQMGTRFVASVE 213 (326)
T ss_dssp CSHHHHHHHHHHTCSEEEESHHHHTBSS
T ss_pred CCHHHHHHHHHhCCCEEEechHHHcCcc
Confidence 9999999999999999999999998765
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-16 Score=146.09 Aligned_cols=232 Identities=15% Similarity=0.112 Sum_probs=151.1
Q ss_pred ceeecCcccccceEECcccccccC----Cc-HHHHHHHHHHHHcCCceeecCCCCC--------------C------HHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMA----HP-EGEYATARAASAAGTIMTLSSWSTS--------------S------VEE 116 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~----~~-~~e~~~a~aa~~~G~~~~vs~~s~~--------------~------~ee 116 (323)
..+|.+.+++++|++|||+...-. .| +-....-+.-++.|..++++++... + ++.
T Consensus 8 p~~ig~~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~ 87 (338)
T 1z41_A 8 PITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAK 87 (338)
T ss_dssp CEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHH
T ss_pred CeeECCEEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHHcCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHHH
Confidence 367899999999999999865321 12 1122333333356888888764211 1 222
Q ss_pred HHh---cCCCceeEEeeec----------------------CCh------------HHHHHHHHHHHHcCCcEEEEecCC
Q 020636 117 VAS---TGPGIRFFQLYVY----------------------KDR------------NVVAQLVRRAERAGFKAIALTVDT 159 (323)
Q Consensus 117 i~~---~~~~~~~~QLy~~----------------------~d~------------~~~~~~~~~a~~~G~~al~itvd~ 159 (323)
+.+ ..+.+.++||+.. ..+ +...+..++++++||+++-|+..|
T Consensus 88 ~~~~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~~ 167 (338)
T 1z41_A 88 LTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAH 167 (338)
T ss_dssp HHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred HHHHHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 322 2345789999742 111 334555677888999999999876
Q ss_pred CCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccC-----
Q 020636 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL----- 234 (323)
Q Consensus 160 p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~----- 234 (323)
.+ +-+.|--|. .+.+ ....+..+ +.++.+..+.++.+|+.++.||.+|...
T Consensus 168 gy-------Ll~qFlsp~-~n~R----------~d~yGGsl------enr~r~~~eiv~avr~~v~~pv~vris~~~~~~ 223 (338)
T 1z41_A 168 GY-------LIHEFLSPL-SNHR----------TDEYGGSP------ENRYRFLREIIDEVKQVWDGPLFVRVSASDYTD 223 (338)
T ss_dssp TS-------HHHHHHCTT-TCCC----------CSTTSSSH------HHHHHHHHHHHHHHHHHCCSCEEEEEECCCCST
T ss_pred ch-------HHHHccCCC-cCCc----------CcccCcch------hhhHHHHHHHHHHHHHHcCCcEEEEecCcccCC
Confidence 43 111121110 0000 00011111 1134466889999999999999999532
Q ss_pred ---CHH----HHHHHHHcCCCEEEEcCCCCC-C-CCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-C
Q 020636 235 ---TAE----DARIAVQAGAAGIIVSNHGAR-Q-LDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 303 (323)
Q Consensus 235 ---~~e----~a~~~~~~Gad~i~vs~~gg~-~-~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-A 303 (323)
+.+ -++.+.+.|+|+|.+++.... + ....+ ..++.+.++++.+ ++|||+.|||++++++.++|+.| |
T Consensus 224 ~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~s~~~a~~~l~~G~a 301 (338)
T 1z41_A 224 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQNGRA 301 (338)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHcCCc
Confidence 343 367888999999999864321 1 11122 2467888898888 89999999999999999999999 9
Q ss_pred CEEEEccccccCcchh
Q 020636 304 SGIFVSIMPCQCPLTE 319 (323)
Q Consensus 304 d~V~iG~~~~~~~~~~ 319 (323)
|+|++||+|+.+|++-
T Consensus 302 D~V~iGR~~i~nPdl~ 317 (338)
T 1z41_A 302 DLIFIGRELLRDPFFA 317 (338)
T ss_dssp SEEEECHHHHHCTTHH
T ss_pred eEEeecHHHHhCchHH
Confidence 9999999999999764
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=155.30 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=89.7
Q ss_pred CccCHHHHHHHHHhc-C-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC-----CCC-CCcchHHHHHHHHHHhcC--
Q 020636 210 RSLSWKDVKWLQTIT-K-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLD-YVPATIMALEEVVKATQG-- 279 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~-----~~~-~~~~~~~~l~~i~~~~~~-- 279 (323)
+...++.++++++.+ + .|++++.+.+.++++.+.++|+|+|+++.++|. ... .+.|++.++.++.+.+..
T Consensus 267 ~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~ 346 (503)
T 1me8_A 267 SEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYF 346 (503)
T ss_dssp SHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHh
Confidence 334577899999987 4 899999999999999999999999999655542 222 356788888888776532
Q ss_pred -----CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 280 -----RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 280 -----~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
++|||++|||+++.|++|||++||++|++|++|+++.
T Consensus 347 ~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~ 388 (503)
T 1me8_A 347 EETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFE 388 (503)
T ss_dssp HHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBT
T ss_pred hhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccc
Confidence 5999999999999999999999999999999998754
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=150.23 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=90.1
Q ss_pred CccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC------CCCcchHHHHHHHHHHhc-CCC
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPATIMALEEVVKATQ-GRI 281 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~------~~~~~~~~~l~~i~~~~~-~~~ 281 (323)
....|+.++++++.+ ++|++.+++.+.++++.+.++|+|+|.+++.+|... ..+.+.++.+.++...+. .++
T Consensus 258 ~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~i 337 (491)
T 1zfj_A 258 SAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGK 337 (491)
T ss_dssp CHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCC
Confidence 334578899999999 899999999999999999999999999987655321 224567888888876542 379
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
|||++|||+++.|+.|++++||++|++|++|+.++
T Consensus 338 pvia~GGi~~~~di~kal~~GA~~v~vG~~~~~~~ 372 (491)
T 1zfj_A 338 TIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTD 372 (491)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBS
T ss_pred CEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhCCC
Confidence 99999999999999999999999999999998754
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=145.15 Aligned_cols=222 Identities=14% Similarity=0.060 Sum_probs=128.3
Q ss_pred CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecCCCCC---------------------
Q 020636 55 DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTS--------------------- 112 (323)
Q Consensus 55 ~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~s~~--------------------- 112 (323)
...+.+++|+++|++|++||++|+ | .++.+ ....+++...|..++ ++|.+..
T Consensus 31 g~~~~~L~v~~~Gl~f~NPvglAa-G---~~~~~--~e~~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~ 104 (354)
T 3tjx_A 31 GRGSMSLQVNLLNNTFANPFMNAA-G---VMCTT--TEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSM 104 (354)
T ss_dssp --CCCCCCEEETTEEESSSEEECT-T---SSCSS--HHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECC
T ss_pred CCCCCceeEEECCEEcCCCcEEcc-C---CCCCC--HHHHHHHHHcCCCEEEeCCcCcccccCCCCCeEEEccccccccc
Confidence 345789999999999999999996 2 12333 346777788887766 3343221
Q ss_pred -----CH----HHHHhcC---CCceeEEeeecCChHHHHHHHHHHHH---cCCcEEEEecCCCCCCchHHHHhhccCCCC
Q 020636 113 -----SV----EEVASTG---PGIRFFQLYVYKDRNVVAQLVRRAER---AGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (323)
Q Consensus 113 -----~~----eei~~~~---~~~~~~QLy~~~d~~~~~~~~~~a~~---~G~~al~itvd~p~~g~r~~d~~~~~~~~~ 177 (323)
.+ +++.+.. ..+..+++.. .+.+...+..+++++ .+++++.||+.||...
T Consensus 105 G~~n~G~~~~~~~~~~~~~~~~~pvivsi~g-~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~-------------- 169 (354)
T 3tjx_A 105 GLPNNGFDFYLAYAAEQHDYGKKPLFLSMSG-LSMRENVEMCKRLAAVATEKGVILELNLSCPNVP-------------- 169 (354)
T ss_dssp CCCBCCHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECC-------------------
T ss_pred ccCCHHHHHHHHHHHHhhccCCceEEEEEec-CChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCc--------------
Confidence 12 2222221 1345666653 334444444444333 3566777777777520
Q ss_pred ccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC--H----HHHHHHHHcC-CCEE
Q 020636 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT--A----EDARIAVQAG-AAGI 250 (323)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~--~----e~a~~~~~~G-ad~i 250 (323)
+.. ..+.+++...+.++++++..+.|+.+|.... . ..+..+.+.+ ++.+
T Consensus 170 ---------------------g~~---~l~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i 225 (354)
T 3tjx_A 170 ---------------------GKP---QVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFI 225 (354)
T ss_dssp ----------------------------CTTSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEE
T ss_pred ---------------------chh---hhccCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhhcccchh
Confidence 000 0012333445678888998999999997532 1 1133334444 3444
Q ss_pred EEcCCCCC-------------------CCCCCcc----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 251 IVSNHGAR-------------------QLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 251 ~vs~~gg~-------------------~~~~~~~----~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
...|.... ....+++ +++.+.++.+.++ ++|||++|||+|++|++++|.+|||+||
T Consensus 226 ~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~-~~pIIg~GGI~s~~Da~e~i~aGAs~Vq 304 (354)
T 3tjx_A 226 TCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCP-GKLIFGCGGVYTGEDAFLHVLAGASMVQ 304 (354)
T ss_dssp EECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHHTEEEEE
T ss_pred heecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhcC-CCcEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 33222100 0011233 2345556655553 7899999999999999999999999999
Q ss_pred Eccccc--cCcchhhhc
Q 020636 308 VSIMPC--QCPLTEKIN 322 (323)
Q Consensus 308 iG~~~~--~~~~~~~~~ 322 (323)
|||+|+ +...+++|+
T Consensus 305 v~Ta~~y~GP~~~~~I~ 321 (354)
T 3tjx_A 305 VGTALQEEGPSIFERLT 321 (354)
T ss_dssp ECHHHHHHCTTHHHHHH
T ss_pred EChhhhhcCchHHHHHH
Confidence 999975 355556654
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=146.44 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC-------CCCcchHHHHHH---HHHHhcCCCeE
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-------DYVPATIMALEE---VVKATQGRIPV 283 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~-------~~~~~~~~~l~~---i~~~~~~~~pv 283 (323)
++.++++++.+++|+++|++.+.++++.+. |+|+|.+ +.|+... ..+.+.+..+.+ +.+.+ ++||
T Consensus 257 L~~I~~l~~~~~vpvi~k~v~~~~~a~~l~--G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~--~vpV 331 (486)
T 2cu0_A 257 IKSMKEMRQKVDADFIVGNIANPKAVDDLT--FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEY--GLYV 331 (486)
T ss_dssp HHHHHHHHHTCCSEEEEEEECCHHHHTTCT--TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHH--TCEE
T ss_pred hhHHHHHHHHhCCccccCCcCCHHHHHHhh--CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHc--CCcE
Confidence 567899999999999999999999999888 9999999 4443321 123344444444 44444 7999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
|++|||+++.|++|||++|||+|++|++|+++.
T Consensus 332 ia~GGi~~~~di~kalalGA~~v~~g~~~~~~~ 364 (486)
T 2cu0_A 332 IADGGIRYSGDIVKAIAAGADAVMLGNLLAGTK 364 (486)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESTTTTTBT
T ss_pred EecCCCCCHHHHHHHHHcCCCceeeChhhhcCc
Confidence 999999999999999999999999999999763
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-14 Score=137.48 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=153.0
Q ss_pred ceeecCcccccceEECcccccccCCcH---HHHHHHHHHHHcCCceeecCCCCC--------------C------HHHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------S------VEEVA 118 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~---~e~~~a~aa~~~G~~~~vs~~s~~--------------~------~eei~ 118 (323)
..+|.+.++++.|++|||+...-..++ .+..+..-++++|..++++++... + ++.+.
T Consensus 8 P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~ 87 (364)
T 1vyr_A 8 PLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKIT 87 (364)
T ss_dssp CEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCHHHHHHHHHHH
Confidence 367889999999999999875310222 366777778888988888874210 1 22232
Q ss_pred h---cCCCceeEEeeec-----------------------------------------CCh------------HHHHHHH
Q 020636 119 S---TGPGIRFFQLYVY-----------------------------------------KDR------------NVVAQLV 142 (323)
Q Consensus 119 ~---~~~~~~~~QLy~~-----------------------------------------~d~------------~~~~~~~ 142 (323)
+ ..+.+.++||+.. ..+ +...+..
T Consensus 88 ~~vh~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA 167 (364)
T 1vyr_A 88 AGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAV 167 (364)
T ss_dssp HHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 1 2345789999620 122 3445566
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
++++++|+++|-|+..|.+ +-..|-.|. .+.+ ....+..+ ..++.+..+.++.+|+
T Consensus 168 ~~a~~aGfDgVeih~a~Gy-------Ll~qFlsp~-~N~R----------~D~yGGsl------enr~r~~~eiv~avr~ 223 (364)
T 1vyr_A 168 ANAREAGFDLVELHSAHGY-------LLHQFLSPS-SNQR----------TDQYGGSV------ENRARLVLEVVDAVCN 223 (364)
T ss_dssp HHHHHTTCSEEEEEECTTS-------HHHHHHCTT-TCCC----------CSTTSSSH------HHHTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEcCccch-------HHHhccCCc-cccc----------CCcCCcch------hcChhhHHHHHHHHHH
Confidence 7788899999999987633 111121010 0000 00011111 1235567888999999
Q ss_pred hcC-CCEEEeccC------------CHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 223 ITK-LPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 223 ~~~-~pv~vK~i~------------~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.++ .||.+|... +.++ ++.+.+.|+|+|.+++.+..+. ....++.+.++++.+ ++|||+
T Consensus 224 ~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~--~~~~~~~~~~v~~~~--~iPvi~ 299 (364)
T 1vyr_A 224 EWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGG--KPYSEAFRQKVRERF--HGVIIG 299 (364)
T ss_dssp HSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBC--CCCCHHHHHHHHHHC--CSEEEE
T ss_pred hcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCC--CcccHHHHHHHHHHC--CCCEEE
Confidence 984 399998542 2333 7888999999999986432111 112467788888888 899999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
.||| +++++.++|+.| ||+|++||+++.+|++-
T Consensus 300 ~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~~P~~~ 333 (364)
T 1vyr_A 300 AGAY-TAEKAEDLIGKGLIDAVAFGRDYIANPDLV 333 (364)
T ss_dssp ESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred ECCc-CHHHHHHHHHCCCccEEEECHHHHhChhHH
Confidence 9999 999999999998 99999999999999764
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-15 Score=140.84 Aligned_cols=228 Identities=15% Similarity=0.057 Sum_probs=151.7
Q ss_pred ceeecCcccccceEECcccccccCCcH---HHHHHHHHHHHcCCceeecCCCCC--------------C------HHHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------S------VEEVA 118 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~---~e~~~a~aa~~~G~~~~vs~~s~~--------------~------~eei~ 118 (323)
..+|.+.+++++|++|||+...-..++ .+..+..-+++++..+++++.... + ++.+.
T Consensus 8 P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~ 87 (365)
T 2gou_A 8 PITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVT 87 (365)
T ss_dssp CEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCCCCCccCCHHHHHHHHHHH
Confidence 367889999999999999875321123 366777777888888888764211 1 22222
Q ss_pred hc---CCCceeEEeeec-----------------------------------------CCh------------HHHHHHH
Q 020636 119 ST---GPGIRFFQLYVY-----------------------------------------KDR------------NVVAQLV 142 (323)
Q Consensus 119 ~~---~~~~~~~QLy~~-----------------------------------------~d~------------~~~~~~~ 142 (323)
+. .+.+.++||+.. ..+ +...+..
T Consensus 88 ~~vh~~g~~i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA 167 (365)
T 2gou_A 88 EAVHAKGCAIFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAA 167 (365)
T ss_dssp HHHHHHSCEEEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 11 235679999630 112 3445566
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
++++++||++|-|+..|.+. -..|.-|. .+.+ ....+..+ +.++.+..+.++.+|+
T Consensus 168 ~~a~~aGfDgVeih~a~gYL-------l~qFlsp~-~N~R----------~D~yGGsl------enr~r~~~eiv~avr~ 223 (365)
T 2gou_A 168 LNAMEAGFDGIELHAANGYL-------INQFIDSE-ANNR----------SDEYGGSL------ENRLRFLDEVVAALVD 223 (365)
T ss_dssp HHHHHTTCSEEEEECCTTSH-------HHHHHSGG-GCCC----------CSTTSSSH------HHHTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEecccchh-------HhhccCCC-ccCc----------CcccCcch------hhhHHHHHHHHHHHHH
Confidence 77888999999999876431 11111010 0000 00011111 1234566788999999
Q ss_pred hcC-CCEEEeccC-----------CHHH----HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEE
Q 020636 223 ITK-LPILVKGVL-----------TAED----ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 223 ~~~-~pv~vK~i~-----------~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia 285 (323)
.++ .||.+|... +.++ ++.+.+.|+|+|.+++.... +.+ -.++.+.++++.+ ++|||+
T Consensus 224 ~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~---~~~~~~~~~~~~i~~~~--~iPvi~ 298 (365)
T 2gou_A 224 AIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWD---DAPDTPVSFKRALREAY--QGVLIY 298 (365)
T ss_dssp HHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTT---BCCCCCHHHHHHHHHHC--CSEEEE
T ss_pred HcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcC---CCCCccHHHHHHHHHHC--CCcEEE
Confidence 984 399999653 2344 78889999999999874311 111 1356788888888 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
.||| +++++.++|+.| ||+|++||+++.+|++-
T Consensus 299 ~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~~P~l~ 332 (365)
T 2gou_A 299 AGRY-NAEKAEQAINDGLADMIGFGRPFIANPDLP 332 (365)
T ss_dssp ESSC-CHHHHHHHHHTTSCSEEECCHHHHHCTTHH
T ss_pred eCCC-CHHHHHHHHHCCCcceehhcHHHHhCchHH
Confidence 9999 999999999998 99999999999999874
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-15 Score=140.93 Aligned_cols=228 Identities=13% Similarity=0.076 Sum_probs=150.2
Q ss_pred ceeecCcccccceEECcccccccCCcH---HHHHHHHHHHHcCCceeecCCCCC--------------C------HHHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPE---GEYATARAASAAGTIMTLSSWSTS--------------S------VEEVA 118 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~---~e~~~a~aa~~~G~~~~vs~~s~~--------------~------~eei~ 118 (323)
..+|.+.++++.|++|||+...- ++ .+..+..-++++|..+++++.... + ++.+.
T Consensus 14 P~~ig~~~l~NRiv~aPm~~~~a--~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~ 91 (377)
T 2r14_A 14 PLQLGSLSLPNRVIMAPLTRSRT--PDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVV 91 (377)
T ss_dssp CEEETTEEESCSEEECCCCCCCC--TTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHHH
T ss_pred CeeECCEEecCCeEECCCcCCcC--CCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCCCCcccCCHHHHHHHHHHH
Confidence 46889999999999999986521 22 466777777888888887764211 1 22232
Q ss_pred h---cCCCceeEEeeec------------------------------------------CCh------------HHHHHH
Q 020636 119 S---TGPGIRFFQLYVY------------------------------------------KDR------------NVVAQL 141 (323)
Q Consensus 119 ~---~~~~~~~~QLy~~------------------------------------------~d~------------~~~~~~ 141 (323)
+ ..+.+.++||+.. ..+ +...+.
T Consensus 92 ~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~a 171 (377)
T 2r14_A 92 EAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQA 171 (377)
T ss_dssp HHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHH
T ss_pred HHHhhcCCeEEEEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHHHH
Confidence 1 2345789999641 112 344566
Q ss_pred HHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHH
Q 020636 142 VRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 221 (323)
Q Consensus 142 ~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 221 (323)
.++++++||++|-|+..|.+ +-+.|--| ..+.+ ....+..+ +.++.+..+.++.+|
T Consensus 172 A~~a~~aGfDgVEIh~a~GY-------Ll~QFlsp-~~N~R----------~D~yGGsl------enR~r~~~eiv~aVr 227 (377)
T 2r14_A 172 AQRAKRAGFDMVEVHAANAC-------LPNQFLAT-GTNRR----------TDQYGGSI------ENRARFPLEVVDAVA 227 (377)
T ss_dssp HHHHHHHTCSEEEEEECTTC-------HHHHHHST-TTCCC----------CSTTSSSH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCcccc-------hHHhccCC-ccccC----------CCccCcch------hhchHHHHHHHHHHH
Confidence 67788899999999987632 11112101 00000 00011111 113446678899999
Q ss_pred HhcC-CCEEEeccC-----------CHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 222 TITK-LPILVKGVL-----------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 222 ~~~~-~pv~vK~i~-----------~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
+.++ .||.+|... +.++ ++.+.++|+|+|.+++....+.... ..++.+.++++.+ ++|||+
T Consensus 228 ~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~ik~~~--~iPvi~ 304 (377)
T 2r14_A 228 EVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT-YPEGFREQMRQRF--KGGLIY 304 (377)
T ss_dssp HHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------C-CCTTHHHHHHHHC--CSEEEE
T ss_pred HHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCc-chHHHHHHHHHHC--CCCEEE
Confidence 9985 399999632 2333 7888899999999976432111111 1456778888888 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
.||| +++++.++|+.| ||+|++||+++.+|++-
T Consensus 305 ~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~~P~l~ 338 (377)
T 2r14_A 305 CGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLP 338 (377)
T ss_dssp ESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred ECCC-CHHHHHHHHHCCCceEEeecHHHHhCchHH
Confidence 9999 699999999998 99999999999999764
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=148.04 Aligned_cols=104 Identities=23% Similarity=0.339 Sum_probs=87.1
Q ss_pred cCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC-----C-CCC---cchHHHHHHHHHHhcCCC
Q 020636 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----L-DYV---PATIMALEEVVKATQGRI 281 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~-----~-~~~---~~~~~~l~~i~~~~~~~~ 281 (323)
..++.++++++.+ ++||++|.+.+.++|+.+.++|+|+|++++|+|.. . +.+ .+.+..++++++.+ ++
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~--~i 359 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF--GV 359 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG--TC
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC--CC
Confidence 4578899999998 89999999999999999999999999997764421 1 112 23456666666665 79
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
|||++|||+++.|+.|++++|||+|++||+|+++++
T Consensus 360 pVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e 395 (514)
T 1jcn_A 360 PIIADGGIQTVGHVVKALALGASTVMMGSLLAATTE 395 (514)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTT
T ss_pred CEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCc
Confidence 999999999999999999999999999999999874
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-14 Score=134.36 Aligned_cols=233 Identities=16% Similarity=0.127 Sum_probs=148.0
Q ss_pred cceeecCcccccceEECccccccc----CCc-HHHHHHHHHHHHcCCceeecCCCC--------------CC------HH
Q 020636 61 MNTTVLGFKISMPIMIAPTAMQKM----AHP-EGEYATARAASAAGTIMTLSSWST--------------SS------VE 115 (323)
Q Consensus 61 ~~t~i~g~~~~~Pi~iaPm~~~~l----~~~-~~e~~~a~aa~~~G~~~~vs~~s~--------------~~------~e 115 (323)
...+|.+.++++-|++|||+...- +.| +-.+..-+.-++-|+++++++... .+ +.
T Consensus 7 ~p~~ig~~~l~NRiv~apm~~~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~ 86 (340)
T 3gr7_A 7 SPYTIRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLR 86 (340)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSEECSSTTHHHHHH
T ss_pred CCEeECCEEEcCceEECCcCCCcccCCCCCCCHHHHHHHHHHhcCCceEEEEcceEecccccCCCCCcccCCHHHHHHHH
Confidence 347788999999999999975321 112 112344444445577777765311 01 12
Q ss_pred HHHh---cCCCceeEEeeecC---------------------------ChH-------HHHHHHHHHHHcCCcEEEEecC
Q 020636 116 EVAS---TGPGIRFFQLYVYK---------------------------DRN-------VVAQLVRRAERAGFKAIALTVD 158 (323)
Q Consensus 116 ei~~---~~~~~~~~QLy~~~---------------------------d~~-------~~~~~~~~a~~~G~~al~itvd 158 (323)
.+.+ ..+...++||.... +.+ ...+..++++++||+++-|+..
T Consensus 87 ~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a 166 (340)
T 3gr7_A 87 ELVGLVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAA 166 (340)
T ss_dssp HHHHHHHHTTCEEEEEEECCGGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHHHhCCCeEEEEeccCCCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 2222 23456788984310 111 2234456677889999999987
Q ss_pred CCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccC----
Q 020636 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL---- 234 (323)
Q Consensus 159 ~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~---- 234 (323)
+-+ +-+.|--| ..+.+ ....+..+ +.++.+..+.++.+|+.++.||.+|...
T Consensus 167 ~Gy-------Ll~qFlsp-~~N~R----------~D~yGGsl------enR~r~~~eiv~avr~~v~~pv~vRls~~~~~ 222 (340)
T 3gr7_A 167 HGY-------LINEFLSP-LSNRR----------QDEYGGSP------ENRYRFLGEVIDAVREVWDGPLFVRISASDYH 222 (340)
T ss_dssp TTC-------HHHHHHCT-TTCCC----------CSTTSSSH------HHHHHHHHHHHHHHHHHCCSCEEEEEESCCCS
T ss_pred cch-------HHHHcCCC-ccCcC----------CCcccCCH------HHHHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 532 11112101 00000 00011111 1134466889999999999999999652
Q ss_pred ----C----HHHHHHHHHcCCCEEEEcCCCCCC--CCCC-cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-
Q 020636 235 ----T----AEDARIAVQAGAAGIIVSNHGARQ--LDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 302 (323)
Q Consensus 235 ----~----~e~a~~~~~~Gad~i~vs~~gg~~--~~~~-~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG- 302 (323)
+ .+-++.+.++|+|+|.+++.+... .... ...++.+.++++.+ ++|||+.|||++++++.++|+.|
T Consensus 223 ~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~iPVi~~GgI~s~e~a~~~L~~G~ 300 (340)
T 3gr7_A 223 PDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA--DIPTGAVGLITSGWQAEEILQNGR 300 (340)
T ss_dssp TTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT--TCCEEEESSCCCHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc--CCcEEeeCCCCCHHHHHHHHHCCC
Confidence 2 345788899999999998633211 1111 22567888888888 89999999999999999999999
Q ss_pred CCEEEEccccccCcchh
Q 020636 303 ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 303 Ad~V~iG~~~~~~~~~~ 319 (323)
||+|++||+++.+|++-
T Consensus 301 aD~V~iGR~~lanPdl~ 317 (340)
T 3gr7_A 301 ADLVFLGRELLRNPYWP 317 (340)
T ss_dssp CSEEEECHHHHHCTTHH
T ss_pred eeEEEecHHHHhCchHH
Confidence 99999999999999863
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=133.55 Aligned_cols=157 Identities=12% Similarity=-0.004 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHH
Q 020636 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (323)
Q Consensus 136 ~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (323)
+...+..++++++||++|-|+..+-+ +-+.|--| ..+.+ ....+..+ +.++.+..+
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGY-------Ll~QFLsp-~~N~R----------tD~yGGsl------enR~rf~~E 226 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGY-------LIDQFLKD-GINDR----------TDEYGGSL------ANRCKFITQ 226 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTS-------HHHHHHCT-TTCCC----------CSTTSSSH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCccch-------HHHhccCC-ccCcc----------CCccCcCh------hhhhHHHHH
Confidence 34456677888999999999986632 11122111 00000 00011111 123456788
Q ss_pred HHHHHHHhcC-CCEEEeccC-----------C----HHHHHHHHHcC------CCEEEEcCCCCCCCCCCc--------c
Q 020636 216 DVKWLQTITK-LPILVKGVL-----------T----AEDARIAVQAG------AAGIIVSNHGARQLDYVP--------A 265 (323)
Q Consensus 216 ~i~~i~~~~~-~pv~vK~i~-----------~----~e~a~~~~~~G------ad~i~vs~~gg~~~~~~~--------~ 265 (323)
.++.+|+.++ .||.+|... + .+-++.+.++| +|+|.+++....+....+ .
T Consensus 227 iv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~ 306 (402)
T 2hsa_B 227 VVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEE 306 (402)
T ss_dssp HHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHH
T ss_pred HHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcc
Confidence 9999999985 599999542 1 23367888999 999999864321111111 2
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
.++.+.++++.+ ++|||+.||| +++++.++|+.| ||+|++||+|+.+|++-
T Consensus 307 ~~~~~~~vk~~~--~iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~dP~l~ 358 (402)
T 2hsa_B 307 EARLMRTLRNAY--QGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFISNPDLV 358 (402)
T ss_dssp HHHHHHHHHHHC--SSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred hHHHHHHHHHHC--CCCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHhCchHH
Confidence 456777888888 7999999999 999999999998 99999999999999764
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-14 Score=134.57 Aligned_cols=230 Identities=13% Similarity=0.063 Sum_probs=143.1
Q ss_pred ceeecCcccccceEECccccccc--CCcHHHHHHHHHHHHc-CCceeecCCCCC--------------C------HHHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKM--AHPEGEYATARAASAA-GTIMTLSSWSTS--------------S------VEEVA 118 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l--~~~~~e~~~a~aa~~~-G~~~~vs~~s~~--------------~------~eei~ 118 (323)
..+|.+.++++.|++|||+...- ..| .+..+.--.+.+ |.++++++.... + +..+.
T Consensus 19 P~~ig~~~l~NRiv~aPm~~~~a~~g~p-t~~~~~yy~~rA~g~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~ 97 (376)
T 1icp_A 19 PCKMGKFELCHRVVLAPLTRQRSYGYIP-QPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIV 97 (376)
T ss_dssp CEEETTEEESCSEEECCCCCCCCGGGSC-CHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHH
T ss_pred CeeECCEEECCccEECCcCcCcCCCCCC-CHHHHHHHHHhcCCeeEEEECceeeccccccCcccCccCCHHHHHHHHHHH
Confidence 36788999999999999986521 122 233322222223 677777765321 1 22232
Q ss_pred h---cCCCceeEEeeec-------------------------------------CCh------------HHHHHHHHHHH
Q 020636 119 S---TGPGIRFFQLYVY-------------------------------------KDR------------NVVAQLVRRAE 146 (323)
Q Consensus 119 ~---~~~~~~~~QLy~~-------------------------------------~d~------------~~~~~~~~~a~ 146 (323)
+ ..+.+.++||+.. ..+ +...+..++++
T Consensus 98 ~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~AA~~a~ 177 (376)
T 1icp_A 98 DAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAI 177 (376)
T ss_dssp HHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEeecCCCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 2 1345779999641 012 34456667888
Q ss_pred HcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC-
Q 020636 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK- 225 (323)
Q Consensus 147 ~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~- 225 (323)
++||++|-|+..|.+ +-+.|--| ..+.+ ....+.++ ..++.+..+.++.+|+.++
T Consensus 178 ~aGfDgVEih~a~Gy-------Ll~qFlsp-~~N~R----------~D~yGGsl------enR~r~~~eiv~aVr~avg~ 233 (376)
T 1icp_A 178 EAGFDGVEIHGAHGY-------LIDQFMKD-QVNDR----------SDKYGGSL------ENRCRFALEIVEAVANEIGS 233 (376)
T ss_dssp HTTCSEEEEEECTTS-------HHHHHHCT-TTCCC----------CSTTSSSH------HHHHHHHHHHHHHHHHHHCG
T ss_pred HcCCCEEEEcCccch-------hhhhccCC-cccCC----------CCccCccH------HHhHHHHHHHHHHHHHHhcC
Confidence 999999999987633 11112101 00000 00011111 1134466888999999985
Q ss_pred CCEEEeccC-----------C----HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 226 LPILVKGVL-----------T----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 226 ~pv~vK~i~-----------~----~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
.||.+|... + .+-++.+.+.|+|+|.+++....+.......++.+.++++.+ ++|||+.|||
T Consensus 234 ~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~--~iPvi~~G~i- 310 (376)
T 1icp_A 234 DRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY--KGTFIVAGGY- 310 (376)
T ss_dssp GGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHC--CSCEEEESSC-
T ss_pred CceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHc--CCCEEEeCCC-
Confidence 399999642 1 234778889999999997643211000011234566777777 7999999999
Q ss_pred CHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 291 RGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 291 ~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
+++++.++|+.| ||+|++||+++.+|++-
T Consensus 311 ~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~ 340 (376)
T 1icp_A 311 DREDGNRALIEDRADLVAYGRLFISNPDLP 340 (376)
T ss_dssp CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred CHHHHHHHHHCCCCcEEeecHHHHhCccHH
Confidence 899999999998 99999999999999764
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-13 Score=127.53 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=86.4
Q ss_pred CccCHHHHHHHHHhc--CCCEEEeccC--------CHHH----HHHHHHcCCCEEEEcCCCCCC---CC-CCcchHHHHH
Q 020636 210 RSLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQ---LD-YVPATIMALE 271 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~--~~pv~vK~i~--------~~e~----a~~~~~~Gad~i~vs~~gg~~---~~-~~~~~~~~l~ 271 (323)
..+..+.++.+|+.+ +.||.+|... +.++ ++.+.++|+|+|.+++.+... .. .....++.+.
T Consensus 202 ~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 281 (349)
T 3hgj_A 202 MRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFAD 281 (349)
T ss_dssp HHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHH
Confidence 346688999999998 6899999652 4555 778889999999998632111 11 1123567888
Q ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 272 ~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++++.+ ++|||+.|||++++++.++|+.| ||+|++||+|+.+|++-
T Consensus 282 ~ir~~~--~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~ 328 (349)
T 3hgj_A 282 AVRKRV--GLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPYFP 328 (349)
T ss_dssp HHHHHH--CCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHH
T ss_pred HHHHHc--CceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHhCchHH
Confidence 888888 89999999999999999999999 99999999999999863
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.3e-14 Score=155.97 Aligned_cols=209 Identities=15% Similarity=0.161 Sum_probs=138.5
Q ss_pred cccccccC-CCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH-------HHh
Q 020636 48 FRPRILID-VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VAS 119 (323)
Q Consensus 48 l~pr~l~~-~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee-------i~~ 119 (323)
|.||..+. -.+++++|.|....-..||+.|||++. .. +..++.++.++|...+++.....+.|+ +++
T Consensus 558 f~prlv~~~~~~~~l~t~~t~~lg~~PIi~a~M~~~-vs----~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~ 632 (2060)
T 2uva_G 558 HGPRLVKTSVGQTFVDTKMSRLLGVPPVMVAGMTPT-TV----PWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEK 632 (2060)
T ss_dssp HCCEEEECTTCCEEEECHHHHHHTSCSEEECCCTTT-TC----SHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGG
T ss_pred cCCcceecCCCceecchhhhhccccceEEecCCCCc-cc----cHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHh
Confidence 45766542 234456655422111699999999842 22 337999999999999993222333333 333
Q ss_pred cC--CCceeEEeeecCCh--HHHHHHHHHHHHcCCcE--EEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCc
Q 020636 120 TG--PGIRFFQLYVYKDR--NVVAQLVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (323)
Q Consensus 120 ~~--~~~~~~QLy~~~d~--~~~~~~~~~a~~~G~~a--l~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
.. ..++.+.+...... ....++++.+.+.|+.. +.++.+.|
T Consensus 633 ~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p--------------------------------- 679 (2060)
T 2uva_G 633 AIPPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGVP--------------------------------- 679 (2060)
T ss_dssp GSCTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSCC---------------------------------
T ss_pred hcccCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecCCCC---------------------------------
Confidence 33 25667776543222 12457778888889876 44332111
Q ss_pred cccchhhHHHHhhccCCccCHH-HHHHHHHhcCCCEEEeccCCHHHHHHH----HHcCCCEEE---EcC--CCCCC--CC
Q 020636 194 EANDSGLAAYVAGQIDRSLSWK-DVKWLQTITKLPILVKGVLTAEDARIA----VQAGAAGII---VSN--HGARQ--LD 261 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~pv~vK~i~~~e~a~~~----~~~Gad~i~---vs~--~gg~~--~~ 261 (323)
..+ .++.+++ .+++++ +.+.+..+|+.+ .++|+|+|+ +.+ .||+. .+
T Consensus 680 -------------------~~e~~~~~l~~-~gi~~i-~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d 738 (2060)
T 2uva_G 680 -------------------SIEVANEYIQT-LGIRHI-SFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFED 738 (2060)
T ss_dssp -------------------CHHHHHHHHHH-SCCSEE-EECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCC
T ss_pred -------------------CHHHHHHHHHH-cCCeEE-EecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCccc
Confidence 122 2333433 477776 566677777766 899999999 654 22321 23
Q ss_pred CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH-----------HcCCCEEEEccccccCcc
Q 020636 262 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal-----------~lGAd~V~iG~~~~~~~~ 317 (323)
...+.+.++++|++.+ ++|||++|||.++.|+.++| ++|||+|++||+|+.+.+
T Consensus 739 ~~~~~l~lv~~i~~~~--~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~E 803 (2060)
T 2uva_G 739 FHQPILLMYSRIRKCS--NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKE 803 (2060)
T ss_dssp SHHHHHHHHHHHHTST--TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTT
T ss_pred ccchHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcC
Confidence 3356788999999877 79999999999999999999 999999999999998754
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=123.91 Aligned_cols=108 Identities=13% Similarity=0.011 Sum_probs=84.4
Q ss_pred CCccCHHHHHHHHHhc--CCCEEEeccC--------CHHH----HHHHHHcCCCEEEEcCCCCCCC--CCC-cchHHHHH
Q 020636 209 DRSLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQL--DYV-PATIMALE 271 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~--~~pv~vK~i~--------~~e~----a~~~~~~Gad~i~vs~~gg~~~--~~~-~~~~~~l~ 271 (323)
+..+..+.++.+|+.+ +.||.+|... +.++ ++.+.++ +|+|.++..+.... ... ...++.+.
T Consensus 192 R~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3kru_A 192 RARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAE 270 (343)
T ss_dssp HTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHH
Confidence 3456788999999999 5799999653 3444 6777788 99999974221110 111 12467788
Q ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 272 ~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++++.+ ++|||+.|||++++++.++|+.| ||+|++||+|+.+|++-
T Consensus 271 ~ir~~~--~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~ 317 (343)
T 3kru_A 271 TIKKRC--NIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWV 317 (343)
T ss_dssp HHHHHH--TCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred HHHHhc--CcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEE
Confidence 888888 79999999999999999999998 99999999999999874
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-13 Score=129.45 Aligned_cols=247 Identities=17% Similarity=0.171 Sum_probs=145.0
Q ss_pred cccccccc--CCCCCccceee-cCcccccceEECcccccccCCcHH---H--HHHHHHHHHcCCceeecCCCC-------
Q 020636 47 LFRPRILI--DVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEG---E--YATARAASAAGTIMTLSSWST------- 111 (323)
Q Consensus 47 ~l~pr~l~--~~~~~d~~t~i-~g~~~~~Pi~iaPm~~~~l~~~~~---e--~~~a~aa~~~G~~~~vs~~s~------- 111 (323)
.|+||..+ ..+..-...+| .|.++++-|++|||+... ..++| + +..-+.-++ |+++++++...
T Consensus 13 ~~~~~~~~M~~~~~Lf~P~~i~g~~~lkNRiv~aPm~~~~-a~~dg~~t~~~~~yy~~rA~-G~GLiIte~~~V~~~g~~ 90 (419)
T 3l5a_A 13 GLVPRGSHMYRYKPLLQSIHLPNGIKISNRFVLSPMTVNA-STKEGYITKADLAYAARRSN-SAGMQVTGAAYIEPYGKL 90 (419)
T ss_dssp --------CCTTGGGGSCEECTTSCEESSSEEECCCCCCC-SCTTCCCCHHHHHHHHHTTT-SCSEEEEEEEESSGGGCC
T ss_pred CcccccccccchhhcCCCEEeCCCCEECCCeEeCCCCCCc-cCCCCCCCHHHHHHHHHHhc-CCcEEEecceEeCccccc
Confidence 46777643 33444456788 899999999999997532 22222 2 222222223 77777765311
Q ss_pred -------CC------HHHHHhc---CCCceeEEeeecC--------------------------------ChH-------
Q 020636 112 -------SS------VEEVAST---GPGIRFFQLYVYK--------------------------------DRN------- 136 (323)
Q Consensus 112 -------~~------~eei~~~---~~~~~~~QLy~~~--------------------------------d~~------- 136 (323)
.+ +..+.++ .+...++||+-.. +.+
T Consensus 91 ~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~vapS~i~~~~~~~~~pr~mt~~eI~~ii~ 170 (419)
T 3l5a_A 91 FEYGFNIDHDACIPGLTNMASTMKQHGSLAIIQLAHAGRFSNQAILNFGKVYGPSPMTLHSPIEHVVIAMSHEKINSIIQ 170 (419)
T ss_dssp STTCEECSSGGGHHHHHHHHHHHHTTSCEEEEEEECCGGGCHHHHHHHSEEEESSCEEECSSSSEEEEECCHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHHHHHHHHhcCCEEEEEeccCCCcccccccCCCceeCCCCCccccCCCCCCccCCHHHHHHHHH
Confidence 01 2222221 2356788885311 011
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 137 ~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
...+..++|+++||+++-|+..+-+ +-+.|--| ..+.| ....|.++. +....+..+.
T Consensus 171 ~F~~AA~rA~~AGfDgVEIH~ahGY-------Ll~QFlSp-~~N~R----------tD~yGGs~l-----enR~Rf~~ev 227 (419)
T 3l5a_A 171 QYRDATLRAIKAGFDGVEISIAQRL-------LIQTFFST-FSNRR----------TDHYGADSL-----KNRARLCLEV 227 (419)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTS-------HHHHHHCT-TTCCC----------CSTTSTTCH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCccch-------HHHHccCC-ccccc----------ccCCCCchh-----hhhhHHHHHH
Confidence 2234456778899999999976622 11122101 00000 000111110 0123466888
Q ss_pred HHHHHHhc------CCCEEEeccC----------CHHH----HHHHHH-cCCCEEEEcCCCC-----CCCCCCc-chHHH
Q 020636 217 VKWLQTIT------KLPILVKGVL----------TAED----ARIAVQ-AGAAGIIVSNHGA-----RQLDYVP-ATIMA 269 (323)
Q Consensus 217 i~~i~~~~------~~pv~vK~i~----------~~e~----a~~~~~-~Gad~i~vs~~gg-----~~~~~~~-~~~~~ 269 (323)
++.+|+.+ +.||.+|... +.++ ++.+.+ +|+|+|.|++.+. .....+. ...+.
T Consensus 228 v~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~ 307 (419)
T 3l5a_A 228 MRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPV 307 (419)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBH
T ss_pred HHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHH
Confidence 99999887 5689999532 3444 677788 9999999987542 1111111 12356
Q ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchh
Q 020636 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 270 l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
+..+++.+++++|||+.|||++++++.++|+. ||+|++||+|+.+|++-
T Consensus 308 a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~IanPdlv 356 (419)
T 3l5a_A 308 NQIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMSSPFVTEPDFV 356 (419)
T ss_dssp HHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHHCTTHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHHCcHHH
Confidence 67777777657999999999999999999999 99999999999999873
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.8e-13 Score=135.45 Aligned_cols=232 Identities=11% Similarity=0.018 Sum_probs=147.2
Q ss_pred ceeecCcccccceEECcccccccCCcH-HH--HHHHHHHHHcCCceeecCCCCC--------------C------HHHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPE-GE--YATARAASAAGTIMTLSSWSTS--------------S------VEEVA 118 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~-~e--~~~a~aa~~~G~~~~vs~~s~~--------------~------~eei~ 118 (323)
..+|.+.+++++|++|||+...-..+. .+ ...-+.-++.|..++++++.+. + +..+.
T Consensus 8 p~~ig~~~l~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (671)
T 1ps9_A 8 PLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTIT 87 (671)
T ss_dssp CEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHH
T ss_pred CeeECCEEEcCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHHHHHHHH
Confidence 467889999999999999863211121 22 2333333366888888764210 0 12222
Q ss_pred h---cCCCceeEEeeecC---------------------Ch------------HHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 119 S---TGPGIRFFQLYVYK---------------------DR------------NVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 119 ~---~~~~~~~~QLy~~~---------------------d~------------~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
+ ..+.+.++||+... .+ +...+..++++++||+++-|+..+.+
T Consensus 88 ~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~~~gy- 166 (671)
T 1ps9_A 88 EAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGY- 166 (671)
T ss_dssp HHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTS-
T ss_pred HHHHhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch-
Confidence 1 23457899997420 12 34455667788899999999987643
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc--CCCEEEecc-------
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGV------- 233 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~i------- 233 (323)
+-+.|--| ..+.+ .+..+..+ +.++.+..+.++.+|+.+ +.|+.+|..
T Consensus 167 ------l~~qFlsp-~~n~r----------~d~yGgs~------~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~ 223 (671)
T 1ps9_A 167 ------LINEFLTL-RTNQR----------SDQWGGDY------RNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVED 223 (671)
T ss_dssp ------HHHHHHCT-TTCCC----------CSTTSSSH------HHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTT
T ss_pred ------HHHHhCCC-ccCCC----------cCcCCCcH------HHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCC
Confidence 11122111 00000 00011111 113446688999999998 688989853
Q ss_pred -CCHHH----HHHHHHcCCCEEEEcCCCCCCC------CCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 020636 234 -LTAED----ARIAVQAGAAGIIVSNHGARQL------DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (323)
Q Consensus 234 -~~~e~----a~~~~~~Gad~i~vs~~gg~~~------~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l 301 (323)
.+.++ ++.+.++|+|+|.+++...... ...+ ..++.+.++++.+ ++||++.|||.+++++.++++.
T Consensus 224 g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~iPvi~~Ggi~~~~~a~~~l~~ 301 (671)
T 1ps9_A 224 GGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV--SLPLVTTNRINDPQVADDILSR 301 (671)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC--SSCEEECSSCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHHc
Confidence 23433 6788899999999975321110 0111 1256677777766 8999999999999999999999
Q ss_pred C-CCEEEEccccccCcchh
Q 020636 302 G-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 302 G-Ad~V~iG~~~~~~~~~~ 319 (323)
| ||+|++||+|+.+|++-
T Consensus 302 g~aD~V~~gR~~l~~P~l~ 320 (671)
T 1ps9_A 302 GDADMVSMARPFLADAELL 320 (671)
T ss_dssp TSCSEEEESTHHHHCTTHH
T ss_pred CCCCEEEeCHHHHhCcHHH
Confidence 8 99999999999999874
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=123.38 Aligned_cols=108 Identities=18% Similarity=0.066 Sum_probs=85.1
Q ss_pred CccCHHHHHHHHHhc--CCCEEEecc---------CCHHH----HHHHHHcCCCEEEEcCCCCCC---CCCCc-chHHHH
Q 020636 210 RSLSWKDVKWLQTIT--KLPILVKGV---------LTAED----ARIAVQAGAAGIIVSNHGARQ---LDYVP-ATIMAL 270 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~--~~pv~vK~i---------~~~e~----a~~~~~~Gad~i~vs~~gg~~---~~~~~-~~~~~l 270 (323)
..+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.++|+|+|.+++.+... ....+ ..++.+
T Consensus 208 ~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~ 287 (363)
T 3l5l_A 208 SRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIA 287 (363)
T ss_dssp HHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHH
Confidence 345678899999998 479999964 22333 778889999999998633111 11112 246778
Q ss_pred HHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 271 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 271 ~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
..+++.+ ++|||+.|||++++++.++|+.| ||+|++||+|+.+|++-
T Consensus 288 ~~ir~~~--~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~ 335 (363)
T 3l5l_A 288 ERVRREA--KLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWA 335 (363)
T ss_dssp HHHHHHH--TCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTTHH
T ss_pred HHHHHHc--CCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCchHH
Confidence 8888888 79999999999999999999999 99999999999999863
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-12 Score=134.32 Aligned_cols=231 Identities=11% Similarity=0.085 Sum_probs=144.4
Q ss_pred ceeecCcccccceEECccccccc-CCcHHHHHHHHHHHHcCCceeecCCCCC---------------C------HHHHHh
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKM-AHPEGEYATARAASAAGTIMTLSSWSTS---------------S------VEEVAS 119 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l-~~~~~e~~~a~aa~~~G~~~~vs~~s~~---------------~------~eei~~ 119 (323)
..+|.+.+++++|++|||+...- ..|.-....-+.-++.|+.+++++..+. + +.++.+
T Consensus 12 p~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~y~~ra~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (729)
T 1o94_A 12 PIQIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTD 91 (729)
T ss_dssp CEEETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHH
T ss_pred CeeECCEEECCccEECCCcCCcCCCCcHHHHHHHHHHhcCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHH
Confidence 36889999999999999976311 1232122333333366788877763210 0 122221
Q ss_pred ---cCCCceeEEeeecC-----------------------C---------------hHHHHHHHHHHHHcCCcEEEEecC
Q 020636 120 ---TGPGIRFFQLYVYK-----------------------D---------------RNVVAQLVRRAERAGFKAIALTVD 158 (323)
Q Consensus 120 ---~~~~~~~~QLy~~~-----------------------d---------------~~~~~~~~~~a~~~G~~al~itvd 158 (323)
..+.+.++||+... + .+...+..++|+++||+++-|+..
T Consensus 92 ~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a 171 (729)
T 1o94_A 92 EVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGA 171 (729)
T ss_dssp HHHTTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHhCCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 12467899997510 0 134455667888899999999987
Q ss_pred CCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc--CCCEEEecc---
Q 020636 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGV--- 233 (323)
Q Consensus 159 ~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~i--- 233 (323)
+.+ +-+.|--| ..+.+ .+..+.++ +.++.+..+.++.+|+.+ +.||.+|..
T Consensus 172 ~gy-------Ll~qFlsp-~~N~R----------~D~yGGs~------enR~r~~~eiv~avr~~vg~~~pv~vrls~~~ 227 (729)
T 1o94_A 172 HSY-------LPLQFLNP-YYNKR----------TDKYGGSL------ENRARFWLETLEKVKHAVGSDCAIATRFGVDT 227 (729)
T ss_dssp TTC-------HHHHHHCT-TTCCC----------CSTTSSSH------HHHTHHHHHHHHHHHHHHTTTSEEEEEEEEEC
T ss_pred cch-------HHHHhcCC-ccCCC----------cCcCCCCH------HHHhHHHHHHHHHHHHHhCCCceEEEEEcccc
Confidence 732 11222101 00000 00011111 124567789999999999 689999963
Q ss_pred ------CC-HHH----HHHHHHcCCCEEEEcCCCC-----CCC---CCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 234 ------LT-AED----ARIAVQAGAAGIIVSNHGA-----RQL---DYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 234 ------~~-~e~----a~~~~~~Gad~i~vs~~gg-----~~~---~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
.+ .++ ++.+.+ |+|.+.+++.+. ... ..... .++...++++.+ ++|||+.|||.+++
T Consensus 228 ~~~~~G~~~~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pvi~~G~i~~~~ 304 (729)
T 1o94_A 228 VYGPGQIEAEVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS--KKPVLGVGRYTDPE 304 (729)
T ss_dssp SSCTTSCCTTTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC--SSCEECCSCCCCHH
T ss_pred CcCCCCCCchHHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHC--CCEEEEeCCCCCHH
Confidence 12 223 444444 899998875321 000 11111 356777788777 89999999999999
Q ss_pred HHHHHHHcC-CCEEEEccccccCcchh
Q 020636 294 DVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 294 di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++.++|+.| ||+|++||+|+.+|++-
T Consensus 305 ~a~~~l~~g~aD~V~~gR~~l~~P~~~ 331 (729)
T 1o94_A 305 KMIEIVTKGYADIIGCARPSIADPFLP 331 (729)
T ss_dssp HHHHHHHTTSCSBEEESHHHHHCTTHH
T ss_pred HHHHHHHCCCCCEEEeCchhhcCchHH
Confidence 999999998 99999999999999874
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-12 Score=114.19 Aligned_cols=172 Identities=16% Similarity=0.014 Sum_probs=114.9
Q ss_pred HHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCcee---EEeeec----CChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF---FQLYVY----KDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 90 e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~---~QLy~~----~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
-..+|+++.+.|...+.. .+...++++++...-|.+ -+-|.. -++ ..+.++.+.++|++.+.+. +...
T Consensus 38 ~~~~A~a~~~~Ga~~i~~-~~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~--~~~~i~~~~~aGad~I~l~--~~~~ 112 (229)
T 3q58_A 38 VAAMAQAAASAGAVAVRI-EGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITP--YLQDVDALAQAGADIIAFD--ASFR 112 (229)
T ss_dssp HHHHHHHHHHTTCSEEEE-ESHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSEEEEE--CCSS
T ss_pred HHHHHHHHHHCCCcEEEE-CCHHHHHHHHHhcCCCEEEEEeecCCCCceEeCc--cHHHHHHHHHcCCCEEEEC--cccc
Confidence 358999999999877543 222234444444433432 121211 111 1234667788999987653 2210
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
.+|....+.++.+++. +.++ +-.+.+.++++.+
T Consensus 113 ---------------------------------------------~~p~~l~~~i~~~~~~-g~~v-~~~v~t~eea~~a 145 (229)
T 3q58_A 113 ---------------------------------------------SRPVDIDSLLTRIRLH-GLLA-MADCSTVNEGISC 145 (229)
T ss_dssp ---------------------------------------------CCSSCHHHHHHHHHHT-TCEE-EEECSSHHHHHHH
T ss_pred ---------------------------------------------CChHHHHHHHHHHHHC-CCEE-EEecCCHHHHHHH
Confidence 0222234456777664 5544 4468899999999
Q ss_pred HHcCCCEEEEcCCCCCCC-CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 243 VQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.++|+|.|.+.++|.+.. ....++++.++++++. ++|||++|||+|++|+.+++++||++|++|++|+...
T Consensus 146 ~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~---~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~p~ 217 (229)
T 3q58_A 146 HQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA---GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRIE 217 (229)
T ss_dssp HHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT---TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHCHH
T ss_pred HhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcChH
Confidence 999999998776664321 1235678888888763 7999999999999999999999999999999987643
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-12 Score=112.52 Aligned_cols=172 Identities=16% Similarity=0.095 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEE----------eeecCChHHHHHHHHHHHHcCCcEEEEec
Q 020636 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ----------LYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (323)
Q Consensus 88 ~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~Q----------Ly~~~d~~~~~~~~~~a~~~G~~al~itv 157 (323)
..-..+++++.+.|+..+... +...++++++....+. +. ++...+ .+.++.+.++|++.+.+..
T Consensus 23 ~~~~~~a~~~~~~Ga~~i~~~-~~~~i~~i~~~~~~pv-~~~~~~~~~~~~~~i~~~----~~~i~~~~~~Gad~v~l~~ 96 (223)
T 1y0e_A 23 FIMSKMALAAYEGGAVGIRAN-TKEDILAIKETVDLPV-IGIVKRDYDHSDVFITAT----SKEVDELIESQCEVIALDA 96 (223)
T ss_dssp HHHHHHHHHHHHHTCSEEEEE-SHHHHHHHHHHCCSCE-EEECBCCCTTCCCCBSCS----HHHHHHHHHHTCSEEEEEC
T ss_pred ccHHHHHHHHHHCCCeeeccC-CHHHHHHHHHhcCCCE-EeeeccCCCccccccCCc----HHHHHHHHhCCCCEEEEee
Confidence 344589999999998766432 2233455555443332 11 222122 2345667788998877653
Q ss_pred CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc-cCHHHHHHHHHhcCCCEEEeccCCH
Q 020636 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKDVKWLQTITKLPILVKGVLTA 236 (323)
Q Consensus 158 d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~pv~vK~i~~~ 236 (323)
..- .+|. ...+.++++++.++...++..+.+.
T Consensus 97 ~~~-----------------------------------------------~~p~~~~~~~i~~~~~~~~~~~v~~~~~t~ 129 (223)
T 1y0e_A 97 TLQ-----------------------------------------------QRPKETLDELVSYIRTHAPNVEIMADIATV 129 (223)
T ss_dssp SCS-----------------------------------------------CCSSSCHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred ecc-----------------------------------------------cCcccCHHHHHHHHHHhCCCceEEecCCCH
Confidence 210 0121 1245688899887433445577899
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCC--CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQ--LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~--~~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
++++.+.+.|+|+|.++++|.+. .+. ..+.++.++++++.+ ++||+++|||++++|+.+++++|||+|++|+++
T Consensus 130 ~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al 207 (223)
T 1y0e_A 130 EEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAI 207 (223)
T ss_dssp HHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC--CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 99999999999999887776532 222 455678899998887 799999999999999999999999999999998
Q ss_pred cc
Q 020636 313 CQ 314 (323)
Q Consensus 313 ~~ 314 (323)
+.
T Consensus 208 ~~ 209 (223)
T 1y0e_A 208 TR 209 (223)
T ss_dssp HC
T ss_pred cC
Confidence 76
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.6e-12 Score=112.45 Aligned_cols=170 Identities=15% Similarity=0.012 Sum_probs=113.8
Q ss_pred HHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEe---ee----cCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQL---YV----YKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 90 e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QL---y~----~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
-..+|+++.+.|...+.. .+...++++++...-|.+-+. |. .-++ ..+.++.+.++|++.+.+. +...
T Consensus 38 ~~~~A~a~~~~Ga~~i~~-~~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~--~~~~i~~~~~~Gad~V~l~--~~~~ 112 (232)
T 3igs_A 38 VAAMALAAEQAGAVAVRI-EGIDNLRMTRSLVSVPIIGIIKRDLDESPVRITP--FLDDVDALAQAGAAIIAVD--GTAR 112 (232)
T ss_dssp HHHHHHHHHHTTCSEEEE-ESHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSEEEEE--CCSS
T ss_pred HHHHHHHHHHCCCeEEEE-CCHHHHHHHHHhcCCCEEEEEeecCCCcceEeCc--cHHHHHHHHHcCCCEEEEC--cccc
Confidence 358999999999886533 222334445544433432111 10 0112 1234667788999987654 2210
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
.+|....+.++.+++. +.++ +-.+.+.++++.+
T Consensus 113 ---------------------------------------------~~p~~l~~~i~~~~~~-g~~v-~~~v~t~eea~~a 145 (232)
T 3igs_A 113 ---------------------------------------------QRPVAVEALLARIHHH-HLLT-MADCSSVDDGLAC 145 (232)
T ss_dssp ---------------------------------------------CCSSCHHHHHHHHHHT-TCEE-EEECCSHHHHHHH
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHC-CCEE-EEeCCCHHHHHHH
Confidence 0222234456777664 5544 4467899999999
Q ss_pred HHcCCCEEEEcCCCCCCC-CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 243 VQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.++|+|+|.+.++|.+.. ....++++.++++++. ++|||++|||+|++|+.+++++|||+|++|++|+.
T Consensus 146 ~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~---~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 146 QRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA---GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp HHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT---TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 999999998766654321 1235678889888764 79999999999999999999999999999999875
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-12 Score=119.24 Aligned_cols=100 Identities=14% Similarity=-0.042 Sum_probs=80.4
Q ss_pred CCccCHHHHHHHHHhcC-CCEEEeccCC-----------HH----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHH
Q 020636 209 DRSLSWKDVKWLQTITK-LPILVKGVLT-----------AE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEE 272 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~-~pv~vK~i~~-----------~e----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~ 272 (323)
+..+..+.++.+|+.++ .||.+|.... .+ -++.+.++|+|+|.+++.. . ++ +.+.+
T Consensus 210 R~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~----~-~~---~~~~~ 281 (361)
T 3gka_A 210 RARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESF----G-GD---AIGQQ 281 (361)
T ss_dssp HSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC----S-TT---CCHHH
T ss_pred cHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC----C-CH---HHHHH
Confidence 35567889999999984 3999996521 22 3678889999999997643 1 11 34667
Q ss_pred HHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 273 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 273 i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
+++.+ ++|||+.||| +++++.++|+.| ||+|++||+++.+|++-
T Consensus 282 ik~~~--~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~ladPdl~ 326 (361)
T 3gka_A 282 LKAAF--GGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIANPDLP 326 (361)
T ss_dssp HHHHH--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred HHHHc--CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcHHH
Confidence 77777 7999999999 999999999998 99999999999999874
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=131.82 Aligned_cols=231 Identities=13% Similarity=0.026 Sum_probs=145.3
Q ss_pred ceeecCcccccceEECcccccccCCcHHH--HHHHHHHHHcCCceeecCCCC----------CC--------H---HHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGE--YATARAASAAGTIMTLSSWST----------SS--------V---EEVA 118 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e--~~~a~aa~~~G~~~~vs~~s~----------~~--------~---eei~ 118 (323)
..+|.+.+++++|++|||+.. ...+..+ ....+..++.|+.+++++... .. + .++.
T Consensus 17 p~~ig~~~l~NRiv~apm~~~-~~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (690)
T 3k30_A 17 PVQIGPFTTKNRFYQVPHCNG-MGYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIA 95 (690)
T ss_dssp CCEETTEECSSSEEECCCCCS-CSSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHH
T ss_pred CeeECCEEECCCeEeCCCcCC-CCCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHHHHHHHH
Confidence 368899999999999999753 2233222 234455667788888876421 00 1 1122
Q ss_pred h---cCCCceeEEeeecC-------------------------C---------------hHHHHHHHHHHHHcCCcEEEE
Q 020636 119 S---TGPGIRFFQLYVYK-------------------------D---------------RNVVAQLVRRAERAGFKAIAL 155 (323)
Q Consensus 119 ~---~~~~~~~~QLy~~~-------------------------d---------------~~~~~~~~~~a~~~G~~al~i 155 (323)
+ ..+.+.++||+... + .+...+..++|+++||+++-|
T Consensus 96 ~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVei 175 (690)
T 3k30_A 96 DAIHEGGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYV 175 (690)
T ss_dssp HHHHHTTCEEEEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCEEEEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 12457899997310 0 134455667888899999999
Q ss_pred ecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc--CCCEEEecc
Q 020636 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGV 233 (323)
Q Consensus 156 tvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~i 233 (323)
+..+++. +-+.|--| ..+.+ .+..+.++ +.+..+..+.++.+|+.+ +.||.+|..
T Consensus 176 h~a~gy~------L~~qFlsp-~~N~R----------~D~yGGs~------enR~r~~~ei~~avr~~~g~~~~v~~r~s 232 (690)
T 3k30_A 176 YGAHGYS------GVHHFLSK-RYNQR----------TDEYGGSL------ENRMRLLRELLEDTLDECAGRAAVACRIT 232 (690)
T ss_dssp EECTTCS------HHHHHHCT-TTCCC----------CSTTSSSH------HHHTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cccccch------HHHHhCCC-ccCCC----------ccccCCCH------HHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 9866540 11222111 00000 01111111 123456788999999998 578999953
Q ss_pred --------CCHHH----HHHHHHcCCCEEEEcCCCC---CC--C-CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 234 --------LTAED----ARIAVQAGAAGIIVSNHGA---RQ--L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 234 --------~~~e~----a~~~~~~Gad~i~vs~~gg---~~--~-~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
.+.++ ++.+.+ |+|.+.++..+. .. . ......++....+++.+ ++|||+.|||++++++
T Consensus 233 ~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pvi~~G~i~~~~~a 309 (690)
T 3k30_A 233 VEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLT--TKPVVGVGRFTSPDAM 309 (690)
T ss_dssp CCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGC--SSCEEECSCCCCHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHc--CCeEEEeCCCCCHHHH
Confidence 23444 455555 899999975321 00 0 11111245666677776 8999999999999999
Q ss_pred HHHHHcC-CCEEEEccccccCcchh
Q 020636 296 FKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 296 ~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
.++|+.| ||+|++||+++.+|++-
T Consensus 310 ~~~l~~g~~d~v~~gR~~~~~P~~~ 334 (690)
T 3k30_A 310 VRQIKAGILDLIGAARPSIADPFLP 334 (690)
T ss_dssp HHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred HHHHHCCCcceEEEcHHhHhCccHH
Confidence 9999998 99999999999999874
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=117.71 Aligned_cols=99 Identities=17% Similarity=0.002 Sum_probs=79.7
Q ss_pred CccCHHHHHHHHHhcC-CCEEEeccCC-----------HHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHH
Q 020636 210 RSLSWKDVKWLQTITK-LPILVKGVLT-----------AED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~-~pv~vK~i~~-----------~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i 273 (323)
..+..+.++.+|+.++ .||.+|.... .++ ++.+.++|+|+|.+++.. . ++ +.+.++
T Consensus 203 ~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~----~-~~---~~~~~i 274 (362)
T 4ab4_A 203 ARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRERE----A-DD---SIGPLI 274 (362)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC----C-TT---CCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC----C-CH---HHHHHH
Confidence 4466889999999984 3999996421 233 778889999999997643 1 11 346677
Q ss_pred HHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 274 ~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++.+ ++|||+.||| +++++.++|+.| ||+|++||+++.+|++-
T Consensus 275 k~~~--~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~lanPdl~ 318 (362)
T 4ab4_A 275 KEAF--GGPYIVNERF-DKASANAALASGKADAVAFGVPFIANPDLP 318 (362)
T ss_dssp HHHH--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred HHHC--CCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcHHH
Confidence 7777 7999999999 999999999998 99999999999999864
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-10 Score=103.21 Aligned_cols=203 Identities=13% Similarity=0.098 Sum_probs=118.2
Q ss_pred ceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecC-CC---CCCHHHHHhcCC---CceeEEeeecC
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSS-WS---TSSVEEVASTGP---GIRFFQLYVYK 133 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~-~s---~~~~eei~~~~~---~~~~~QLy~~~ 133 (323)
.++|.|++|++|++++.-++ |+.+ .+.++..+.|.-.+ ++- .+ ..+++++.+..+ .+...+.....
T Consensus 3 ~~~i~~~~~~~~~~~~t~g~-----p~~~-~~~~~l~~~Gad~ielg~pr~~~~g~~~~~~~~~l~~~~~~~~pn~~~~~ 76 (264)
T 1xm3_A 3 MLTIGGKSFQSRLLLGTGKY-----PSFD-IQKEAVAVSESDILTFAVRRMNIFEASQPNFLEQLDLSKYTLLPNTAGAS 76 (264)
T ss_dssp CEEETTEEESCCEEEECSCS-----SCHH-HHHHHHHHHTCSEEEEETTSSTTC-------CTTCCGGGSEEEEECTTCS
T ss_pred CeEECCEEecCCCEEEecCC-----CCHH-HHHHHHHHcCCeEEEEcccccccCCCCHHHHHHHHHhcCCeEcCCccccC
Confidence 46799999999999998544 3333 23467777786554 331 11 123444444332 12222332224
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+.+.....++.++++|...+ ++++.... .|. .....
T Consensus 77 ~~~~~~~f~~~a~~agg~~~-i~l~i~~d------------~~~-------------------------------~~~e~ 112 (264)
T 1xm3_A 77 TAEEAVRIARLAKASGLCDM-IKVEVIGC------------SRS-------------------------------LLPDP 112 (264)
T ss_dssp SHHHHHHHHHHHHHTTCCSS-EEECCBCC------------TTT-------------------------------CCBCH
T ss_pred CHHHHHHHHHHHHHcCCCCe-EEEeecCC------------Ccc-------------------------------cccch
Confidence 44444456666766643322 23322110 000 00011
Q ss_pred HHHHHHHHHhc--CCCEEEeccCCHHHHHHHHHcCCCEEEEcCC-CCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 214 WKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
.+.++..++.+ +..++.-...+.+.++++.+.|+|+|...+. .|.. .+....+.++.+++.. ++||++.|||+
T Consensus 113 ~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~--~~~~~~~~l~~i~~~~--~iPviv~gGI~ 188 (264)
T 1xm3_A 113 VETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSG--QGILNPLNLSFIIEQA--KVPVIVDAGIG 188 (264)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCC--CCCSCHHHHHHHHHHC--SSCBEEESCCC
T ss_pred HHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCcccCCC--CCCCCHHHHHHHHhcC--CCCEEEEeCCC
Confidence 23455555543 4445434456788999999999999944221 1211 1222366788887755 89999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+++|+.+++++|||+|.+|++++..++-
T Consensus 189 t~eda~~~~~~GAdgViVGSAi~~a~dp 216 (264)
T 1xm3_A 189 SPKDAAYAMELGADGVLLNTAVSGADDP 216 (264)
T ss_dssp SHHHHHHHHHTTCSEEEESHHHHTSSSH
T ss_pred CHHHHHHHHHcCCCEEEEcHHHhCCCCH
Confidence 9999999999999999999999876543
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-10 Score=101.78 Aligned_cols=168 Identities=17% Similarity=0.158 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEE----------eeecCChHHHHHHHHHHHHcCCcEEEEecCCC
Q 020636 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQ----------LYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (323)
Q Consensus 91 ~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~Q----------Ly~~~d~~~~~~~~~~a~~~G~~al~itvd~p 160 (323)
..+++++.+.|+..+.-. +...++.+++...-+. +. ++... ..+.++.+.++|++.+.++...-
T Consensus 39 ~~~a~~~~~~G~~~i~~~-~~~~i~~i~~~~~~p~-i~~~~~~~~~~~~~i~~----~~~~i~~~~~~Gad~V~l~~~~~ 112 (234)
T 1yxy_A 39 PLMAKAAQEAGAVGIRAN-SVRDIKEIQAITDLPI-IGIIKKDYPPQEPFITA----TMTEVDQLAALNIAVIAMDCTKR 112 (234)
T ss_dssp HHHHHHHHHHTCSEEEEE-SHHHHHHHHTTCCSCE-EEECBCCCTTSCCCBSC----SHHHHHHHHTTTCSEEEEECCSS
T ss_pred HHHHHHHHHCCCcEeecC-CHHHHHHHHHhCCCCE-EeeEcCCCCccccccCC----hHHHHHHHHHcCCCEEEEccccc
Confidence 579999999998665321 2223455555443332 21 22211 13456778889999887653210
Q ss_pred CCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCC--ccCHHHHHHHHHhcCCCEEEeccCCHHH
Q 020636 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR--SLSWKDVKWLQTITKLPILVKGVLTAED 238 (323)
Q Consensus 161 ~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~pv~vK~i~~~e~ 238 (323)
. +| ....+.++.+++.++...++-.+.+.++
T Consensus 113 ~-----------------------------------------------~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~~e 145 (234)
T 1yxy_A 113 D-----------------------------------------------RHDGLDIASFIRQVKEKYPNQLLMADISTFDE 145 (234)
T ss_dssp C-----------------------------------------------CTTCCCHHHHHHHHHHHCTTCEEEEECSSHHH
T ss_pred C-----------------------------------------------CCCCccHHHHHHHHHHhCCCCeEEEeCCCHHH
Confidence 0 11 1225678888888733234446788999
Q ss_pred HHHHHHcCCCEE--EEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 239 ARIAVQAGAAGI--IVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 239 a~~~~~~Gad~i--~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
++.+.++|+|+| .+.+..........+.++.+.++++. ++||+++|||+|.+|+.+++++|||+|++|++|+.
T Consensus 146 a~~a~~~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~---~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 146 GLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA---GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR 220 (234)
T ss_dssp HHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT---TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred HHHHHHcCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 999999999999 44432211111234567888887764 69999999999999999999999999999999876
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=129.21 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=124.5
Q ss_pred eeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH-------hcC--CCceeEEeeecC
Q 020636 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STG--PGIRFFQLYVYK 133 (323)
Q Consensus 63 t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~-------~~~--~~~~~~QLy~~~ 133 (323)
|+++|+ .||+.+||+... .+..++.|+.++|....+...+..+.|+++ +.. +.++.+.+...
T Consensus 584 t~llg~---~PIi~~gM~~~~-----~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~- 654 (2051)
T 2uv8_G 584 SKLIGR---PPLLVPGMTPCT-----VSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIEKGSTFGINLIYV- 654 (2051)
T ss_dssp HHHHSS---CSEEECCCHHHH-----TCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHHSCTTCCEEEEEETT-
T ss_pred HHhhCc---cceecCCCcccc-----ccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHhcCCCCceEEEEeec-
Confidence 446883 699999997321 234799999999999998443333433332 222 25667776432
Q ss_pred ChH---HHHHHHHHHHHcCCcE--EEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhcc
Q 020636 134 DRN---VVAQLVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (323)
Q Consensus 134 d~~---~~~~~~~~a~~~G~~a--l~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (323)
++. ...++++.+.+.|+.. +.+.-+.|
T Consensus 655 ~~~~~~~~~~~~~~~~~~gv~i~~v~~~ag~p------------------------------------------------ 686 (2051)
T 2uv8_G 655 NPFMLQWGIPLIKELRSKGYPIQFLTIGAGVP------------------------------------------------ 686 (2051)
T ss_dssp CTTHHHHHHHHHHHHHHTTCSEEEEEEESSCC------------------------------------------------
T ss_pred ChhhhhhhHHHHHHHHHcCCCcceEEecCCCC------------------------------------------------
Confidence 321 1226778888889887 43332211
Q ss_pred CCccCHHH-HHHHHHhcCCCEEEeccCC---HHHHHHHHHcCCCEE---EEcCC--CCCC--CCCCcchHHHHHHHHHHh
Q 020636 209 DRSLSWKD-VKWLQTITKLPILVKGVLT---AEDARIAVQAGAAGI---IVSNH--GARQ--LDYVPATIMALEEVVKAT 277 (323)
Q Consensus 209 ~~~~~~~~-i~~i~~~~~~pv~vK~i~~---~e~a~~~~~~Gad~i---~vs~~--gg~~--~~~~~~~~~~l~~i~~~~ 277 (323)
.++. ++.+ +.++++++.....+ ...++.+.++|+|.+ ++.|. ||+. .|...+.+.+++++++.+
T Consensus 687 ----~~~~~~~~i-~~lG~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~ 761 (2051)
T 2uv8_G 687 ----SLEVASEYI-ETLGLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHP 761 (2051)
T ss_dssp ----CHHHHHHHH-HHSCCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCT
T ss_pred ----chhhHHHHH-HHcCCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcC
Confidence 1122 2223 33388877654433 344677788899994 33332 3432 123355667889998877
Q ss_pred cCCCeEEEecCCCCHHHHHHHH-----------HcCCCEEEEccccccCcc
Q 020636 278 QGRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 278 ~~~~pvia~GGI~~~~di~kal-----------~lGAd~V~iG~~~~~~~~ 317 (323)
++|||+.|||.++.++..+| +||||+|+|||+|+.+.+
T Consensus 762 --~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~E 810 (2051)
T 2uv8_G 762 --NIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKE 810 (2051)
T ss_dssp --TBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTT
T ss_pred --CceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCcc
Confidence 89999999999999999999 899999999999987543
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-10 Score=100.83 Aligned_cols=95 Identities=25% Similarity=0.255 Sum_probs=75.2
Q ss_pred CHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..++++.+++.++ |+++|.+ .+.++ ++.+.++|+|+|.++ +|. ..+..+++.++.+++.+++++||
T Consensus 104 ~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~ts-tg~---~~gga~~~~i~~v~~~v~~~ipV 178 (225)
T 1mzh_A 104 VVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTS-TGF---APRGTTLEEVRLIKSSAKGRIKV 178 (225)
T ss_dssp HHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECC-CSC---SSSCCCHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEC-CCC---CCCCCCHHHHHHHHHHhCCCCcE
Confidence 4556888999887 9999973 34444 788889999999554 332 12335788888888888668999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
+++|||+|++|+.+++++|||.|++++.+
T Consensus 179 ia~GGI~t~~da~~~l~aGA~~iG~s~~~ 207 (225)
T 1mzh_A 179 KASGGIRDLETAISMIEAGADRIGTSSGI 207 (225)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEESCHH
T ss_pred EEECCCCCHHHHHHHHHhCchHHHHccHH
Confidence 99999999999999999999988887643
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=98.33 Aligned_cols=142 Identities=22% Similarity=0.284 Sum_probs=99.9
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHH
Q 020636 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 219 (323)
Q Consensus 140 ~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (323)
+..+.+|++|+.++.+-..||. |+|. +. ++ ...-+.+.|+.
T Consensus 22 eqa~iae~aGa~av~~l~~~p~------d~r~-~g---Gv-----------------------------~Rm~dp~~I~~ 62 (291)
T 3o07_A 22 EQAKIAEKSGACAVMALESIPA------DMRK-SG---KV-----------------------------CRMSDPKMIKD 62 (291)
T ss_dssp HHHHHHHHHTCSEEEECSSCHH------HHHT-TT---CC-----------------------------CCCCCHHHHHH
T ss_pred HHHHHHHHhCchhhhhccCCCc------hhhh-cC---Cc-----------------------------cccCCHHHHHH
Confidence 5577889999999999988875 4431 00 00 11124667888
Q ss_pred HHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcC---------C----------------------------------
Q 020636 220 LQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN---------H---------------------------------- 255 (323)
Q Consensus 220 i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~---------~---------------------------------- 255 (323)
|++.+++||+-|- +....+|+.+.++|+|.|.-|. |
T Consensus 63 I~~aVsIPVm~k~righ~~EAqilea~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTt 142 (291)
T 3o07_A 63 IMNSVSIPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTK 142 (291)
T ss_dssp HHTTCSSCEEEEEETTCHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEEC
T ss_pred HHHhCCCCeEEEEecCcHHHHHHHHHcCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEec
Confidence 8888888888774 3556777777777777775542 1
Q ss_pred --CCCC---------------------CCC----------CcchHHHHHHHHHHhcCCCeE--EEecCCCCHHHHHHHHH
Q 020636 256 --GARQ---------------------LDY----------VPATIMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALA 300 (323)
Q Consensus 256 --gg~~---------------------~~~----------~~~~~~~l~~i~~~~~~~~pv--ia~GGI~~~~di~kal~ 300 (323)
.|+. +.. -.++++.+.++++.. ++|| |++|||.|++|+.+++.
T Consensus 143 ge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~--~IPVV~IAnGGI~TpedA~~~le 220 (291)
T 3o07_A 143 GEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKG--KLPVVNFAAGGVATPADAALLMQ 220 (291)
T ss_dssp CCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHT--SCSSCEEBCSSCCSHHHHHHHHH
T ss_pred CcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHcc--CCCEEEecCCCCCCHHHHHHHHH
Confidence 0000 000 024567888888776 7888 56999999999999999
Q ss_pred cCCCEEEEccccccCcchhhhc
Q 020636 301 LGASGIFVSIMPCQCPLTEKIN 322 (323)
Q Consensus 301 lGAd~V~iG~~~~~~~~~~~~~ 322 (323)
+|||+|++||.++..++-.++.
T Consensus 221 ~GaDGVmVGrAI~~s~DP~~~A 242 (291)
T 3o07_A 221 LGCDGVFVGSGIFKSSNPVRLA 242 (291)
T ss_dssp TTCSCEEECGGGGGSSCHHHHH
T ss_pred hCCCEEEEchHHhCCCCHHHHH
Confidence 9999999999999987766543
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-09 Score=98.46 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=69.9
Q ss_pred eccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 231 KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 231 K~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
-.+.+.++++++.++|+|.|-+.|+..+ ....+++...++.+.++.++|+|+.|||+|++|+.++..+||++|.||+
T Consensus 174 vevh~~eEl~~A~~~ga~iIGinnr~l~---t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~ 250 (272)
T 3tsm_A 174 IEVHDEAEMERALKLSSRLLGVNNRNLR---SFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGE 250 (272)
T ss_dssp EEECSHHHHHHHTTSCCSEEEEECBCTT---TCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECH
T ss_pred EEeCCHHHHHHHHhcCCCEEEECCCCCc---cCCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcH
Confidence 3457788888888888888877665432 2234566677777777767999999999999999999999999999999
Q ss_pred ccccCcchhh
Q 020636 311 MPCQCPLTEK 320 (323)
Q Consensus 311 ~~~~~~~~~~ 320 (323)
.|+..++.++
T Consensus 251 almr~~d~~~ 260 (272)
T 3tsm_A 251 SLMRQHDVAA 260 (272)
T ss_dssp HHHTSSCHHH
T ss_pred HHcCCcCHHH
Confidence 9999887654
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-09 Score=95.85 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=118.2
Q ss_pred ceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCC------HHHHHhcCCCceeEEeeec---
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS------VEEVASTGPGIRFFQLYVY--- 132 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~------~eei~~~~~~~~~~QLy~~--- 132 (323)
..+|.|++|.+.+++.-=-+ .+ ...+.++....|.-++.=.+.... .+.+.+..+. .-+.+.++
T Consensus 10 ~l~i~~~~f~SRl~~Gtgky---~~---~~~~~~a~~asg~e~vtva~rR~~~~~~~~~~~~~~~i~~-~~~~~lpNTag 82 (265)
T 1wv2_A 10 PFVIAGRTYGSRLLVGTGKY---KD---LDETRRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPP-DRYTILPNTAG 82 (265)
T ss_dssp CEEETTEEESCCEEECCSCS---SS---HHHHHHHHHHSCCSEEEEEGGGCCC-------------CT-TTSEEEEECTT
T ss_pred CeEECCEEeecceEEecCCC---CC---HHHHHHHHHHhCCCeEEEEEEeeccccCCCcchHHhhhhh-cCCEECCcCCC
Confidence 47899999999999975212 12 225666777888766533322111 2334443332 11223332
Q ss_pred -CChHHHHHHHHHHHH-cC-CcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 133 -KDRNVVAQLVRRAER-AG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 133 -~d~~~~~~~~~~a~~-~G-~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
.+-+.-....+.+++ ++ -+.+=+-|= +.+ +.. ..|
T Consensus 83 ~~ta~eAv~~a~lare~~~~~~~iKlEv~----~d~------------~~l--------------------------lpD 120 (265)
T 1wv2_A 83 CYDAVEAVRTCRLARELLDGHNLVKLEVL----ADQ------------KTL--------------------------FPN 120 (265)
T ss_dssp CCSHHHHHHHHHHHHTTTTSCCEEEECCB----SCT------------TTC--------------------------CBC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEEEee----cCc------------ccc--------------------------CcC
Confidence 333433444555666 53 344333221 000 000 012
Q ss_pred CccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC-CCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+..+.+..+.+.+. +..++.-...++..++++.++|++.|...+. -|+ ..+..+.+.|+.+.+.. ++|||++||
T Consensus 121 ~~~tv~aa~~L~~~-Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGs--G~Gi~~~~lI~~I~e~~--~vPVI~eGG 195 (265)
T 1wv2_A 121 VVETLKAAEQLVKD-GFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGS--GLGICNPYNLRIILEEA--KVPVLVDAG 195 (265)
T ss_dssp HHHHHHHHHHHHTT-TCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESC
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCC--CCCcCCHHHHHHHHhcC--CCCEEEeCC
Confidence 22233344444332 4544444568899999999999999977332 121 11345688899998865 899999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
|.+++|+.+++++|||+|++|+++....
T Consensus 196 I~TPsDAa~AmeLGAdgVlVgSAI~~a~ 223 (265)
T 1wv2_A 196 VGTASDAAIAMELGCEAVLMNTAIAHAK 223 (265)
T ss_dssp CCSHHHHHHHHHHTCSEEEESHHHHTSS
T ss_pred CCCHHHHHHHHHcCCCEEEEChHHhCCC
Confidence 9999999999999999999999986533
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-08 Score=93.41 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHcCC--ceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 020636 88 EGEYATARAASAAGT--IMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (323)
Q Consensus 88 ~~e~~~a~aa~~~G~--~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r 165 (323)
+.|........+... +-.++.+...+.+++....+... |-+....+.+.++++++.+.|+.+++|+ |..-..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~IDhTl---L~p~~T~~dI~~lc~eA~~~g~aaVCV~---P~~V~~ 100 (288)
T 3oa3_A 27 NEEWDLLISGKKATLQYPIPLLCYPAPEVVSIAQIIDHTQ---LSLSATGSQIDVLCAEAKEYGFATVCVR---PDYVSR 100 (288)
T ss_dssp HHHHHHHHHHHHTTSCSSCCCSCSCCCCGGGGGGGEEEEC---CCTTCCHHHHHHHHHHHHHHTCSEEEEC---GGGHHH
T ss_pred cHHHHHHHHHHHHhcCCccccccCCCCCHHHHHHhcCccc---CCCCCCHHHHHHHHHHHHhcCCcEEEEC---HHHHHH
Confidence 556655555555555 34444444444666665544222 4445568888999999999999999986 332122
Q ss_pred HHHHhhccCCCCccccccccccccCCCccc-----------cchhhHHH---Hh--hccCCccCHHHHHHHHHhcCCCEE
Q 020636 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEA-----------NDSGLAAY---VA--GQIDRSLSWKDVKWLQTITKLPIL 229 (323)
Q Consensus 166 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~~--~~~~~~~~~~~i~~i~~~~~~pv~ 229 (323)
.++.-.+ ..+.+..+.+||.+..... .|+.-.+. +. ..++.+...++|+.+++..+.| +
T Consensus 101 a~~~L~~----s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~-~ 175 (288)
T 3oa3_A 101 AVQYLQG----TQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDA-I 175 (288)
T ss_dssp HHHHTTT----SSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTS-E
T ss_pred HHHHcCC----CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCC-C
Confidence 2222111 1344555667776643210 00000000 00 0122233456788888887766 4
Q ss_pred Eecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 020636 230 VKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 230 vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~ 300 (323)
+|.+ ++.++ ++.+.++|+|.|..|. |.......+..+.++.++.+.++.+++|.++||||+.+|+++++.
T Consensus 176 lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTST-Gf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~ 254 (288)
T 3oa3_A 176 LKVILETSQLTADEIIAGCVLSSLAGADYVKTST-GFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVR 254 (288)
T ss_dssp EEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCC-SSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHH
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCC-CCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH
Confidence 7854 56666 6777899999999983 221111123455566665544355899999999999999999999
Q ss_pred cCCCEEEEcc
Q 020636 301 LGASGIFVSI 310 (323)
Q Consensus 301 lGAd~V~iG~ 310 (323)
+||+.++..+
T Consensus 255 aGA~RiGtS~ 264 (288)
T 3oa3_A 255 AGAERLGASA 264 (288)
T ss_dssp TTCSEEEESC
T ss_pred cCCceeehhh
Confidence 9999776644
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-09 Score=125.13 Aligned_cols=209 Identities=17% Similarity=0.213 Sum_probs=132.3
Q ss_pred ccccccccCC-CCCccc---eeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH------
Q 020636 47 LFRPRILIDV-SKIDMN---TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE------ 116 (323)
Q Consensus 47 ~l~pr~l~~~-~~~d~~---t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee------ 116 (323)
.|.|+..+.- ..+.++ ++++| +.||+.+||+.. ...| .|+.+..++|....++.....+.+.
T Consensus 402 ~f~P~l~~~~~g~~~~~t~~~~~lg---~~PIi~a~M~~~-~s~~----~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~ 473 (3089)
T 3zen_D 402 SYAPTVVKLPDGSVKLETKFTRLTG---RSPILLAGMTPT-TVDA----KIVAAAANAGHWAELAGGGQVTEQIFNDRIA 473 (3089)
T ss_dssp GGCCEEEECTTCCEEEECHHHHHHS---SCSEEECCCHHH-HTSH----HHHHHHHHTTCEEEECSTTCCSHHHHHHHHH
T ss_pred ccCCcccccCCCcccccchhhhhcC---CCCEEeCCCcCC-cCCH----HHHHHHHhCCCceeecCCCCCCHHHHHHHHH
Confidence 3666655421 222233 34566 689999999864 1233 7999999999999996544334333
Q ss_pred -HHhcC--CCceeEEeeecCChHH------HHHHHHHHHHcC--CcEEEEecCCCCCCchHHHHhhccCCCCcccccccc
Q 020636 117 -VASTG--PGIRFFQLYVYKDRNV------VAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (323)
Q Consensus 117 -i~~~~--~~~~~~QLy~~~d~~~------~~~~~~~a~~~G--~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~ 185 (323)
+++.. +.++.+.+.. .++.. .+++++.+.+.| +++++++.|.|.. +
T Consensus 474 ~~r~~~~~~~p~~vNl~~-~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~~-----e----------------- 530 (3089)
T 3zen_D 474 ELETLLEPGRAIQFNTLF-LDPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPDL-----E----------------- 530 (3089)
T ss_dssp HHHHHSCTTCCCEEEEEC-SCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCCH-----H-----------------
T ss_pred HHHHhcCCCCceeechhh-cChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCch-----h-----------------
Confidence 33333 2344455432 23322 146788888899 6668776555420 0
Q ss_pred ccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCC------EEEEcCC--CC
Q 020636 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAA------GIIVSNH--GA 257 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad------~i~vs~~--gg 257 (323)
...+.++.+++. ++.++.=.+.+.++++++.+.|+| +|++.+. ||
T Consensus 531 --------------------------e~~~~i~~l~~~-Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~eaGG 583 (3089)
T 3zen_D 531 --------------------------EAVDIIDELNEV-GISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGG 583 (3089)
T ss_dssp --------------------------HHHHHHTSTTHH-HHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCSSSSE
T ss_pred --------------------------HhHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCCCcCC
Confidence 001123333332 344444246788999999999999 7888653 23
Q ss_pred CCCCCCcchHHHH----HHHHHHhcCCCeEEEecCCCCHHHHHHHH-----------HcCCCEEEEccccccCcc
Q 020636 258 RQLDYVPATIMAL----EEVVKATQGRIPVFLDGGVRRGTDVFKAL-----------ALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 258 ~~~~~~~~~~~~l----~~i~~~~~~~~pvia~GGI~~~~di~kal-----------~lGAd~V~iG~~~~~~~~ 317 (323)
+. +......++ .++++.. ++|||+.|||.+++++..+| ++|||+|++||+|+.+.+
T Consensus 584 H~--g~~~~~~ll~~~~~~ir~~~--~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~E 654 (3089)
T 3zen_D 584 HH--SWEDLDDLLLATYSELRSRS--NITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLE 654 (3089)
T ss_dssp EC--CSCCHHHHHHHHHHHHTTCT--TEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTT
T ss_pred CC--CcccHHHHHHHHHHHHhhcC--CCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCcc
Confidence 22 223344555 4444333 79999999999999999999 999999999999998764
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.7e-10 Score=105.48 Aligned_cols=103 Identities=6% Similarity=-0.168 Sum_probs=79.4
Q ss_pred CccCHHHHHHHHHhcC-CCEEEeccC-----------CHH----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHH
Q 020636 210 RSLSWKDVKWLQTITK-LPILVKGVL-----------TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~-~pv~vK~i~-----------~~e----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i 273 (323)
..+..+.++.+|+.++ .||.+|... +.+ -++.+.+.|+|+|.+++.+... . ..+ .+ +.++
T Consensus 227 ~r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~-~-~~~-~~-~~~i 302 (379)
T 3aty_A 227 CQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN-Q-QIG-DV-VAWV 302 (379)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS-C-CCC-CH-HHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC-C-Ccc-HH-HHHH
Confidence 4456788999999885 489998542 223 3677789999999998743211 1 111 25 6777
Q ss_pred HHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 274 ~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++.+ ++|||+.||| +++++.++|+.| ||+|++||+|+.+|++-
T Consensus 303 r~~~--~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~~P~l~ 346 (379)
T 3aty_A 303 RGSY--SGVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIANPDLV 346 (379)
T ss_dssp HTTC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred HHHC--CCcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHhCcHHH
Confidence 7777 7999999999 999999999998 99999999999999764
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.5e-09 Score=97.91 Aligned_cols=106 Identities=12% Similarity=-0.094 Sum_probs=73.3
Q ss_pred ccCHHHHHHHHHhcC-CCEEEeccC-----------CH----HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHH
Q 020636 211 SLSWKDVKWLQTITK-LPILVKGVL-----------TA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 274 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~-~pv~vK~i~-----------~~----e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~ 274 (323)
.+..|.++.+|+.++ -++.+|... .. +.++.+.+.|++.+.++..................+++
T Consensus 203 Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik 282 (358)
T 4a3u_A 203 RLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIR 282 (358)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHhhhccCccccccccccccCcccccccHHHHHHHH
Confidence 356789999999884 467888431 12 22567778999999987543211111111112344566
Q ss_pred HHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 275 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 275 ~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
+.. ..||+ .||+.+++++.++|+.| ||.|.+||+|+.+|+|-
T Consensus 283 ~~~--~~~v~-~~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp 325 (358)
T 4a3u_A 283 KVF--KPPLV-LNQDYTFETAQAALDSGVADAISFGRPFIGNPDLP 325 (358)
T ss_dssp HHC--CSCEE-EESSCCHHHHHHHHHHTSCSEEEESHHHHHCTTHH
T ss_pred Hhc--CCcEE-EeCCCCHHHHHHHHHcCCceEeHhhHHHHhChhHH
Confidence 655 55665 58889999999999999 99999999999999874
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=90.84 Aligned_cols=182 Identities=20% Similarity=0.134 Sum_probs=113.2
Q ss_pred HHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCc
Q 020636 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (323)
Q Consensus 114 ~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
.+++....+... |-+....+.+.++++++.+.|+.+++|+ |..-.+.++.-.+ ..+.+..+.+||.+...
T Consensus 24 ~~~l~~~IDhTl---L~p~~t~~~i~~lc~eA~~~~~~aVcV~---p~~v~~a~~~L~~----s~v~v~tVigFP~G~~~ 93 (239)
T 3ngj_A 24 KATLAKYIDHTL---LKADATEEQIRKLCSEAAEYKFASVCVN---PTWVPLCAELLKG----TGVKVCTVIGFPLGATP 93 (239)
T ss_dssp HHHHHTTEEEEE---CCTTCCHHHHHHHHHHHHHHTCSEEEEC---GGGHHHHHHHHTT----SSCEEEEEESTTTCCSC
T ss_pred HHHHHhhcCccc---CCCCCCHHHHHHHHHHHHhcCCcEEEEC---HHHHHHHHHHhCC----CCCeEEEEeccCCCCCc
Confidence 556665544221 4445568888999999999999999986 3322222222211 13445556678776532
Q ss_pred cc-----------cchhhHHH---Hh--hccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHHHHH----HHHcCCC
Q 020636 194 EA-----------NDSGLAAY---VA--GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAEDARI----AVQAGAA 248 (323)
Q Consensus 194 ~~-----------~~~~~~~~---~~--~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~a~~----~~~~Gad 248 (323)
.. .++.-.+. +. ..++.+...++|+.+++..+. .++|.| ++.++... +.++|+|
T Consensus 94 ~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia~~aGAD 172 (239)
T 3ngj_A 94 SEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRCVAAGAE 172 (239)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHHHHHCcC
Confidence 10 00000000 00 012333445678888888753 366744 56666444 4899999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 249 GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 249 ~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+|..|..-+ .+..+++.+..+++.++++++|.++||||+.+|+++++++||+.++..+
T Consensus 173 fVKTSTGf~----~ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~riGtS~ 230 (239)
T 3ngj_A 173 YVKTSTGFG----THGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGASRIGASA 230 (239)
T ss_dssp EEECCCSSS----SCCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEEEEEESC
T ss_pred EEECCCCCC----CCCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhcccceeccc
Confidence 999984211 1235566666666666668999999999999999999999999877654
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.5e-09 Score=91.10 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=55.6
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
++.|.++++.+.+.|+|.|.+... ....++.+.++.+.++ ++||+++|||. .+++.+++.+||++|.+|+.
T Consensus 110 g~~t~~e~~~a~~~Gad~vk~~~~-------~~~g~~~~~~l~~~~~-~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~ 180 (205)
T 1wa3_A 110 GVMTPTELVKAMKLGHTILKLFPG-------EVVGPQFVKAMKGPFP-NVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSA 180 (205)
T ss_dssp EECSHHHHHHHHHTTCCEEEETTH-------HHHHHHHHHHHHTTCT-TCEEEEBSSCC-TTTHHHHHHHTCSCEEECHH
T ss_pred CcCCHHHHHHHHHcCCCEEEEcCc-------cccCHHHHHHHHHhCC-CCcEEEcCCCC-HHHHHHHHHCCCCEEEECcc
Confidence 334566666666666666655320 0123456666665554 79999999996 78999999999999999999
Q ss_pred cccCcchhh
Q 020636 312 PCQCPLTEK 320 (323)
Q Consensus 312 ~~~~~~~~~ 320 (323)
++. ++|.+
T Consensus 181 i~~-~d~~~ 188 (205)
T 1wa3_A 181 LVK-GTPDE 188 (205)
T ss_dssp HHC-SCHHH
T ss_pred ccC-CCHHH
Confidence 987 66443
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-08 Score=93.72 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=75.3
Q ss_pred hcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC
Q 020636 223 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302 (323)
Q Consensus 223 ~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG 302 (323)
.+++.++ -.+.+.++++.+.+.|+|.|.+.|.. +......++.+.++.+.++.++||++.|||++++|+.+++.+|
T Consensus 160 ~lGl~~l-vev~t~ee~~~A~~~Gad~IGv~~r~---l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~G 235 (272)
T 3qja_A 160 SLGMTAL-VEVHTEQEADRALKAGAKVIGVNARD---LMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAG 235 (272)
T ss_dssp HTTCEEE-EEESSHHHHHHHHHHTCSEEEEESBC---TTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTT
T ss_pred HCCCcEE-EEcCCHHHHHHHHHCCCCEEEECCCc---ccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcC
Confidence 3566554 35788999999999999999997643 2222345666777777665579999999999999999999999
Q ss_pred CCEEEEccccccCcchhhh
Q 020636 303 ASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 303 Ad~V~iG~~~~~~~~~~~~ 321 (323)
|++|.||+.|+..++-.+.
T Consensus 236 adgvlVGsal~~a~dp~~~ 254 (272)
T 3qja_A 236 ADAVLVGEGLVTSGDPRAA 254 (272)
T ss_dssp CSEEEECHHHHTCSCHHHH
T ss_pred CCEEEEcHHHhCCCCHHHH
Confidence 9999999999987765543
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=94.65 Aligned_cols=91 Identities=23% Similarity=0.316 Sum_probs=64.5
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC-----------------------CCCC-------CcchHHHHHHHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----------------------QLDY-------VPATIMALEEVV 274 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~-----------------------~~~~-------~~~~~~~l~~i~ 274 (323)
+.++++ .+.+.+++.++.+.|+|.|.+++..|. ..+. .+..++.+.++.
T Consensus 125 g~~v~~-~~~~~~e~~~a~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~ 203 (305)
T 2nv1_A 125 TVPFVC-GCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIK 203 (305)
T ss_dssp SSCEEE-EESSHHHHHHHHHTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHH
T ss_pred CCcEEE-EeCCHHHHHHHHHCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHH
Confidence 444433 455667777777777777777432110 0000 123567788887
Q ss_pred HHhcCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 275 KATQGRIPVF--LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 275 ~~~~~~~pvi--a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+.+ ++||+ ++|||++++|+.+++.+|||+|++||.++..++.
T Consensus 204 ~~~--~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p 247 (305)
T 2nv1_A 204 KDG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNP 247 (305)
T ss_dssp HHT--SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCH
T ss_pred Hhc--CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCH
Confidence 765 78998 9999999999999999999999999999976543
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-08 Score=86.66 Aligned_cols=184 Identities=19% Similarity=0.180 Sum_probs=114.8
Q ss_pred CCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCC
Q 020636 112 SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (323)
Q Consensus 112 ~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~ 191 (323)
.+..++....+... |-+....+.+.++++++.+.|+.+++|+ |..-...++.-.+ ..+.+..+.+||.+.
T Consensus 38 ~~~~~la~~IDhTl---L~p~~t~~~I~~lc~eA~~~~~aaVCV~---p~~V~~a~~~L~g----s~v~v~tVigFP~G~ 107 (260)
T 3r12_A 38 AGIEDVKSAIEHTN---LKPFATPDDIKKLCLEARENRFHGVCVN---PCYVKLAREELEG----TDVKVVTVVGFPLGA 107 (260)
T ss_dssp CCHHHHHHHEEEEE---CCTTCCHHHHHHHHHHHHHTTCSEEEEC---GGGHHHHHHHHTT----SCCEEEEEESTTTCC
T ss_pred CCHHHHHHhcCccc---CCCCCCHHHHHHHHHHHHhcCCcEEEEC---HHHHHHHHHHhcC----CCCeEEEEecCCCCC
Confidence 45667776554222 4445668888999999999999999985 3322222222211 134455566787775
Q ss_pred Cccc-cchhhHHHHh---------------hccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcC
Q 020636 192 MDEA-NDSGLAAYVA---------------GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAG 246 (323)
Q Consensus 192 ~~~~-~~~~~~~~~~---------------~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~G 246 (323)
.... .-....+.+. ..++.+...++|+.+++..+ ...+|.+ ++.++ ++.+.++|
T Consensus 108 ~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~Lt~eei~~A~~ia~eaG 186 (260)
T 3r12_A 108 NETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLAG 186 (260)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 3210 0000000000 01222333456888888765 3456855 45555 45667999
Q ss_pred CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 247 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 247 ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+|.|..|..-+ .+..+++.+..+++.++++++|-++||||+.+|+++++++||+.++..+
T Consensus 187 ADfVKTSTGf~----~~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS~ 246 (260)
T 3r12_A 187 AHFVKTSTGFG----TGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSS 246 (260)
T ss_dssp CSEEECCCSSS----SCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred cCEEEcCCCCC----CCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeecch
Confidence 99999984211 2245666666667777778999999999999999999999999776544
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.85 E-value=5.8e-08 Score=86.31 Aligned_cols=184 Identities=22% Similarity=0.184 Sum_probs=114.6
Q ss_pred CCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCC
Q 020636 112 SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (323)
Q Consensus 112 ~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~ 191 (323)
.+..++....++.. |-+....+.+.++++++.+.|+.+++++ |..-.+.+.+ . ...+.+..+.+||.+.
T Consensus 8 ~~~~~l~~~IDhTl---L~p~~t~~~i~~lc~eA~~~~~~aVcV~---p~~v~~a~~l-~----~~~v~v~tVigFP~G~ 76 (231)
T 3ndo_A 8 HTRAQVAALVDHTL---LKPEATPSDVTALVDEAADLGVFAVCVS---PPLVSVAAGV-A----PSGLAIAAVAGFPSGK 76 (231)
T ss_dssp CCHHHHHTTEEEEC---CCTTCCHHHHHHHHHHHHHHTCSEEEEC---GGGHHHHHHH-C----CTTCEEEEEESTTTCC
T ss_pred cCHHHHHHhcCccc---CCCCCCHHHHHHHHHHHHHhCCcEEEEC---HHHHHHHHHh-c----CCCCeEEEEecCCCCC
Confidence 34566766544322 4445568888999999999999999985 3322222211 1 1234555566788775
Q ss_pred Cccc-cchhhHHHHh---------------hccCCccCHHHHHHHHHhcCCCEEEecc-----C----CHHH----HHHH
Q 020636 192 MDEA-NDSGLAAYVA---------------GQIDRSLSWKDVKWLQTITKLPILVKGV-----L----TAED----ARIA 242 (323)
Q Consensus 192 ~~~~-~~~~~~~~~~---------------~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~----~~e~----a~~~ 242 (323)
.... .-....+.+. ..++.+...++|+.+++..+. ..+|.+ + +.++ ++.+
T Consensus 77 ~~~~~K~~E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~-~~lKvIiEt~~L~~~~t~eei~~a~~ia 155 (231)
T 3ndo_A 77 HVPGIKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRA-ATLKVIVESAALLEFSGEPLLADVCRVA 155 (231)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCHHHHHHHTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccC-CceEEEEECcccCCCCCHHHHHHHHHHH
Confidence 3210 0000000000 012223345578888888753 456855 4 5555 4566
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.++|+|.|..|..-+ ..+..+++.+..+++.++++++|-++||||+.+|+++++++||+.++..+
T Consensus 156 ~~aGADfVKTSTGf~---~~~gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~RiGtS~ 220 (231)
T 3ndo_A 156 RDAGADFVKTSTGFH---PSGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRLGLSG 220 (231)
T ss_dssp HHTTCSEEECCCSCC---TTCSCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEEEESS
T ss_pred HHHCcCEEEcCCCCC---CCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcchhcccch
Confidence 799999999875211 01235667777777777778999999999999999999999999766543
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=93.88 Aligned_cols=91 Identities=24% Similarity=0.303 Sum_probs=68.5
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCC---C--------------------CCCCC-------CCcchHHHHHHHH
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH---G--------------------ARQLD-------YVPATIMALEEVV 274 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~---g--------------------g~~~~-------~~~~~~~~l~~i~ 274 (323)
++++.+. +.+++++..+.++|+|+|.+.+- | |.... ..++.++.+.+++
T Consensus 125 ~i~l~~~-v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~ 203 (297)
T 2zbt_A 125 KVPFVCG-ARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVH 203 (297)
T ss_dssp SSCEEEE-ESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHH
T ss_pred CceEEee-cCCHHHHHHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHH
Confidence 5666543 67889999999999999988531 0 00000 0123467788887
Q ss_pred HHhcCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 275 KATQGRIPVF--LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 275 ~~~~~~~pvi--a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+.. ++||+ ++|||++++|+.+++.+|||+|++|+.++..++.
T Consensus 204 ~~~--~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp 247 (297)
T 2zbt_A 204 DHG--RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDP 247 (297)
T ss_dssp HHS--SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCH
T ss_pred Hhc--CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCH
Confidence 765 78888 9999999999999999999999999999976544
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.83 E-value=6e-08 Score=88.49 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=99.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+.+.+.++++.+++.|++.|-+.+ |.. =| ...||.-. .+..+.+........
T Consensus 31 P~~~~~~~~~~~l~~~GaD~iElGi--PfS------------DP----------~aDGpvIq---~a~~rAL~~G~~~~~ 83 (271)
T 3nav_A 31 PNPEQSLAIMQTLIDAGADALELGM--PFS------------DP----------LADGPTIQ---GANLRALAAKTTPDI 83 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEEC--CCC------------CG----------GGCCSHHH---HHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC--CCC------------CC----------CCCCHHHH---HHHHHHHHcCCCHHH
Confidence 4568888999999999999887654 431 01 01111100 111112222222334
Q ss_pred CHHHHHHHHHh-cCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCC---------------CCC--------C--
Q 020636 213 SWKDVKWLQTI-TKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNH---------------GAR--------Q-- 259 (323)
Q Consensus 213 ~~~~i~~i~~~-~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~---------------gg~--------~-- 259 (323)
.++.++++|+. .++|+++-+- .....++.+.++|+|++++..- |-. .
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~ 163 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASD 163 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 46789999987 6899987642 1244589999999999887321 100 0
Q ss_pred ------------------CC---CC----cc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 260 ------------------LD---YV----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 260 ------------------~~---~~----~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.. |. +. ..+.+.++++.. ++||++.+||++++++.+++..|||+|.+|+++.
T Consensus 164 eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv 241 (271)
T 3nav_A 164 ETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD--APPALLGFGISEPAQVKQAIEAGAAGAISGSAVV 241 (271)
T ss_dssp HHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 00 11 11 235677777766 7999999999999999999999999999999886
Q ss_pred c
Q 020636 314 Q 314 (323)
Q Consensus 314 ~ 314 (323)
.
T Consensus 242 ~ 242 (271)
T 3nav_A 242 K 242 (271)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-08 Score=89.30 Aligned_cols=84 Identities=14% Similarity=0.155 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC---CCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.+.+++..+.+.|+|.|-+.+...+. ....++.+.++.+.++. ++|+++.|||+|++|+.++.. ||++|.||
T Consensus 161 v~~~~E~~~a~~~gad~IGvn~~~l~~---~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVG 236 (254)
T 1vc4_A 161 VHTERELEIALEAGAEVLGINNRDLAT---LHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIG 236 (254)
T ss_dssp ECSHHHHHHHHHHTCSEEEEESBCTTT---CCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEEC
T ss_pred ECCHHHHHHHHHcCCCEEEEccccCcC---CCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEe
Confidence 467777788888888888776654332 23445555666665543 689999999999999999999 99999999
Q ss_pred cccccCcchhh
Q 020636 310 IMPCQCPLTEK 320 (323)
Q Consensus 310 ~~~~~~~~~~~ 320 (323)
++++..++.++
T Consensus 237 sAl~~~~d~~~ 247 (254)
T 1vc4_A 237 TSLMRAPDLEA 247 (254)
T ss_dssp HHHHTSSCHHH
T ss_pred HHHcCCCCHHH
Confidence 99998887654
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-08 Score=91.13 Aligned_cols=51 Identities=33% Similarity=0.440 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCeE--EEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 268 MALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 268 ~~l~~i~~~~~~~~pv--ia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+.++++.+.. ++|| |+.|||.|++|+.+++++|||+|+||+.++..++-++
T Consensus 230 ell~~i~~~~--~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~ 282 (330)
T 2yzr_A 230 EVLLEVKKLG--RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLE 282 (330)
T ss_dssp HHHHHHHHHT--SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHH
T ss_pred HHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHH
Confidence 6777777765 7888 6999999999999999999999999999996655443
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-08 Score=94.61 Aligned_cols=94 Identities=24% Similarity=0.319 Sum_probs=75.9
Q ss_pred cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC---------------------C--CC-------CcchHHHHHHH
Q 020636 224 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------L--DY-------VPATIMALEEV 273 (323)
Q Consensus 224 ~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~---------------------~--~~-------~~~~~~~l~~i 273 (323)
.+.++++ ++.+.++++++.+.|+|.|.+.|++|+. + +. ..+++++++++
T Consensus 124 ~g~~vvv-~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i 202 (297)
T 4adt_A 124 FKTPFVC-GCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLT 202 (297)
T ss_dssp CSSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHH
T ss_pred CCCeEEE-EeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHH
Confidence 3567766 6899999999999999999998775532 0 11 13467888888
Q ss_pred HHHhcCCCeEE--EecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 274 VKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 274 ~~~~~~~~pvi--a~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
.+.+ ++||+ ++|||++++|+.+++.+|||+|++|+.|+..++-.+
T Consensus 203 ~~~~--~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~ 249 (297)
T 4adt_A 203 RKLK--RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQK 249 (297)
T ss_dssp HHHT--SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHH
T ss_pred HHhc--CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHH
Confidence 8877 67776 999999999999999999999999999998765443
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-07 Score=84.64 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
..+.+.++++.. ++||++.|||++++++.+++.+|||+|.+|+++...
T Consensus 189 ~~~~i~~v~~~~--~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 189 VESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQ 236 (262)
T ss_dssp HHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHHHHHhhc--CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhH
Confidence 345777887776 799999999999999999999999999999998754
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-09 Score=100.61 Aligned_cols=108 Identities=18% Similarity=0.012 Sum_probs=76.3
Q ss_pred CccCHHHHHHHHHhcC-CCEEEeccC-----------C--------HHHHHHH---HHcC--CCEEEEcCCC-CCCCCCC
Q 020636 210 RSLSWKDVKWLQTITK-LPILVKGVL-----------T--------AEDARIA---VQAG--AAGIIVSNHG-ARQLDYV 263 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~-~pv~vK~i~-----------~--------~e~a~~~---~~~G--ad~i~vs~~g-g~~~~~~ 263 (323)
..+..+.++.+|+.++ .||.+|... + .+-++.+ .+.| +|+|.++... ..+.+..
T Consensus 218 ~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~ 297 (407)
T 3tjl_A 218 ARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVS 297 (407)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECC
T ss_pred hHHHHHHHHHHHHHhCCCeEEEEECcccccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCC
Confidence 4466889999999985 589999552 2 2235677 7789 9999997421 1111111
Q ss_pred cc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc---C-CCEEEEccccccCcchh
Q 020636 264 PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---G-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 264 ~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l---G-Ad~V~iG~~~~~~~~~~ 319 (323)
+. ....+..+++.+ ++|||++|||.+..|+.+++.. | ||+|++||.|+.+|++-
T Consensus 298 ~~~~~~~~~~ir~~~--~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~ 356 (407)
T 3tjl_A 298 EEDQAGDNEFVSKIW--KGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLV 356 (407)
T ss_dssp GGGCCCCSHHHHHHC--CSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCTTHH
T ss_pred ccchhHHHHHHHHHh--CCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhhCchHH
Confidence 11 112345566666 6899999999999988877775 5 99999999999999864
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.8e-08 Score=87.21 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=97.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+.+.+.+.++.+++.|++.|-+.+ |..- ++.++..+. ....+.+....+....
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgi--PfSD----------P~aDGp~Iq---------------~a~~~AL~~G~~~~~~ 82 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGF--PFSD----------PLADGPVIQ---------------GANLRSLAAGTTSSDC 82 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEEC--CCSC----------CTTCCHHHH---------------HHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC--CCCC----------CCCCCHHHH---------------HHHHHHHHcCCCHHHH
Confidence 348889999999999999876553 4310 001111110 0011112222222234
Q ss_pred HHHHHHHHHh-cCCCEEEeccCC-------HHHHHHHHHcCCCEEEEcCC---------------CCC--------C---
Q 020636 214 WKDVKWLQTI-TKLPILVKGVLT-------AEDARIAVQAGAAGIIVSNH---------------GAR--------Q--- 259 (323)
Q Consensus 214 ~~~i~~i~~~-~~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~~---------------gg~--------~--- 259 (323)
++.++++|+. .++|+++-+-.+ ...++.+.++|+|++++..- |-. .
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~e 162 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADAD 162 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHH
Confidence 6789999987 789988764322 34588999999999988321 100 0
Q ss_pred -----------------CC---CC-----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 260 -----------------LD---YV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 260 -----------------~~---~~-----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.. +. ....+.+.++++.. ++||++.|||++++++.+++..|||+|.+|+++..
T Consensus 163 ri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~--~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~ 240 (267)
T 3vnd_A 163 TLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN--APPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVK 240 (267)
T ss_dssp HHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT--CCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 00 11 11245677776655 79999999999999999999999999999998864
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.76 E-value=8.8e-08 Score=87.29 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCH
Q 020636 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (323)
Q Consensus 135 ~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
.+.+.+.++.+++.|++.|-+.+ |... | ...++.- .....+.+..........
T Consensus 30 ~~~~~~~~~~l~~~GaD~ieig~--P~sd------------p----------~~DG~~i---~~a~~~al~~G~~~~~~~ 82 (268)
T 1qop_A 30 IEQSLKIIDTLIDAGADALELGV--PFSD------------P----------LADGPTI---QNANLRAFAAGVTPAQCF 82 (268)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEC--CCSC------------C----------TTCCHHH---HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECC--CCCC------------c----------cCCCHHH---HHHHHHHHHcCCCHHHHH
Confidence 37778889999999999887644 4410 0 0000000 000011111111122335
Q ss_pred HHHHHHHHh-cCCCEEEec----c---CCHHHHHHHHHcCCCEEEEcCC---------------CCC-----CC------
Q 020636 215 KDVKWLQTI-TKLPILVKG----V---LTAEDARIAVQAGAAGIIVSNH---------------GAR-----QL------ 260 (323)
Q Consensus 215 ~~i~~i~~~-~~~pv~vK~----i---~~~e~a~~~~~~Gad~i~vs~~---------------gg~-----~~------ 260 (323)
+.++++|+. .++|+++=+ + ...+.++.+.++|+|++++..- |-. ..
T Consensus 83 ~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~ 162 (268)
T 1qop_A 83 EMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDL 162 (268)
T ss_dssp HHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHH
T ss_pred HHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHH
Confidence 789999998 789976521 1 1246788899999999987421 100 00
Q ss_pred -----------------C--CC------cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 261 -----------------D--YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 261 -----------------~--~~------~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
. ++ +...+.+.++++.. ++||+++|||++++++.+++..|||+|++|+.+...
T Consensus 163 i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~--~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 163 LRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI 240 (268)
T ss_dssp HHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhcc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence 0 01 12357778887766 799999999999999999999999999999998653
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-08 Score=88.77 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc---CCCEEEEcccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFVSIMP 312 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l---GAd~V~iG~~~ 312 (323)
.+.++.+.+.|++.|.+++...... .....++.+.++++.+ ++|||++|||++.+|+.+++++ ||++|++||+|
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~-~~g~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGT-LGGPNLDLLAGVADRT--DAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTT-TSCCCHHHHHHHHTTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHhCCCCEEEEEecCCccc-cCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 6778999999999998865321111 1134788888888766 8999999999999999999998 99999999999
Q ss_pred ccCcch
Q 020636 313 CQCPLT 318 (323)
Q Consensus 313 ~~~~~~ 318 (323)
+..|+.
T Consensus 229 ~~~~~~ 234 (244)
T 2y88_A 229 YARRFT 234 (244)
T ss_dssp HTTSSC
T ss_pred HCCCcC
Confidence 998853
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-07 Score=81.52 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=70.9
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
..+.++.. +..+.++++. +.++++++.+.+.|+|+|.+.. + .+..++.+.++.+.++.++||+++|||. .
T Consensus 90 ~~~~~~~~-~~~g~~~~~g-~~t~~e~~~a~~~G~d~v~v~~-t------~~~g~~~~~~l~~~~~~~ipvia~GGI~-~ 159 (212)
T 2v82_A 90 HSEVIRRA-VGYGMTVCPG-CATATEAFTALEAGAQALKIFP-S------SAFGPQYIKALKAVLPSDIAVFAVGGVT-P 159 (212)
T ss_dssp CHHHHHHH-HHTTCEEECE-ECSHHHHHHHHHTTCSEEEETT-H------HHHCHHHHHHHHTTSCTTCEEEEESSCC-T
T ss_pred CHHHHHHH-HHcCCCEEee-cCCHHHHHHHHHCCCCEEEEec-C------CCCCHHHHHHHHHhccCCCeEEEeCCCC-H
Confidence 34455544 4456666554 7899999999999999998732 1 1224577777776653249999999997 9
Q ss_pred HHHHHHHHcCCCEEEEccccccC
Q 020636 293 TDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+++.+++++||++|.+|+.++..
T Consensus 160 ~~i~~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 160 ENLAQWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp TTHHHHHHHTCSEEEECTTTCCT
T ss_pred HHHHHHHHcCCCEEEEChHHhCC
Confidence 99999999999999999999876
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.71 E-value=8.9e-08 Score=85.80 Aligned_cols=101 Identities=21% Similarity=0.207 Sum_probs=76.6
Q ss_pred CHHHHHHHHHhcCCCEEEeccCC-------HHHHHHHHHcCCCEEEEcCC---------------CC---------CC--
Q 020636 213 SWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSNH---------------GA---------RQ-- 259 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~~---------------gg---------~~-- 259 (323)
..+.++++++.+++|+.+.+..+ .+.++.+.++|+|+|++..- |- +.
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e 147 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDE 147 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHH
Confidence 46788999988888988876423 47789999999999998531 10 00
Q ss_pred --------CC------------CC-----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 260 --------LD------------YV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 260 --------~~------------~~-----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+ +. +..++.+.++++.+ ++||+++|||++++++.+++.+|||+|.+|++++.
T Consensus 148 ~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~--~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~ 225 (248)
T 1geq_A 148 RLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVK 225 (248)
T ss_dssp HHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc--CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHh
Confidence 01 01 12356777777776 79999999999999999999999999999999876
Q ss_pred C
Q 020636 315 C 315 (323)
Q Consensus 315 ~ 315 (323)
.
T Consensus 226 ~ 226 (248)
T 1geq_A 226 I 226 (248)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-07 Score=83.39 Aligned_cols=92 Identities=10% Similarity=0.052 Sum_probs=73.6
Q ss_pred cCCCEEEeccCCHHHHHHHHHc-CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC
Q 020636 224 TKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302 (323)
Q Consensus 224 ~~~pv~vK~i~~~e~a~~~~~~-Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG 302 (323)
.+. ..+-.+.+.++++++.++ |+|.|-+.|++-+ +...+++...++.+.++.++++|+.|||+|++|+.++..+
T Consensus 149 lGl-~~lvEv~~~eE~~~A~~l~g~~iIGinnr~l~---t~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~- 223 (251)
T 1i4n_A 149 LGM-DSLVEVHSREDLEKVFSVIRPKIIGINTRDLD---TFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK- 223 (251)
T ss_dssp TTC-EEEEEECSHHHHHHHHTTCCCSEEEEECBCTT---TCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-
T ss_pred cCC-eEEEEeCCHHHHHHHHhcCCCCEEEEeCcccc---cCCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-
Confidence 454 445567899999999999 9999999886532 2234455556666666667899999999999999999999
Q ss_pred CCEEEEccccccCcchhh
Q 020636 303 ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 303 Ad~V~iG~~~~~~~~~~~ 320 (323)
|++|.||+.++..++..+
T Consensus 224 a~avLVG~aimr~~d~~~ 241 (251)
T 1i4n_A 224 VNAVLVGTSIMKAENPRR 241 (251)
T ss_dssp CSEEEECHHHHHCSSHHH
T ss_pred CCEEEEcHHHcCCcCHHH
Confidence 999999999998877654
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=9.2e-08 Score=84.33 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=65.7
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCC-CCC-CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQ-LDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~-~~~-~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.+.++++.+.+.|+|+|.+++..+++ ..+ .+..++.++++.+.+ ++||+++||| +++++.+++++||++|.+|
T Consensus 116 sv~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~--~~pvia~GGI-~~~nv~~~~~~Ga~gv~vg 192 (221)
T 1yad_A 116 SVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI--SIPVIAIGGM-TPDRLRDVKQAGADGIAVM 192 (221)
T ss_dssp EECSHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC--CSCEEEESSC-CGGGHHHHHHTTCSEEEES
T ss_pred EcCCHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHcCCCEEEEh
Confidence 4578999999999999999986532221 112 234577888887766 7999999999 9999999999999999999
Q ss_pred cccccCcc
Q 020636 310 IMPCQCPL 317 (323)
Q Consensus 310 ~~~~~~~~ 317 (323)
+.++..++
T Consensus 193 s~i~~~~d 200 (221)
T 1yad_A 193 SGIFSSAE 200 (221)
T ss_dssp HHHHTSSS
T ss_pred HHhhCCCC
Confidence 99998776
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.2e-08 Score=87.40 Aligned_cols=83 Identities=20% Similarity=0.196 Sum_probs=66.8
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.+.++.+.+.|++.|.++..+.... ...+.++.+.++++.+ ++|||++|||++.+|+.+++.+|||+|++|++|+.
T Consensus 154 ~~e~~~~~~~~G~~~i~~~~~~~~g~-~~g~~~~~i~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~ 230 (252)
T 1ka9_F 154 AVEWAVKGVELGAGEILLTSMDRDGT-KEGYDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF 230 (252)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTTTTT-CSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCC-cCCCCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHc
Confidence 36778999999999998863221111 1223689999999887 89999999999999999999999999999999998
Q ss_pred Cc-chhh
Q 020636 315 CP-LTEK 320 (323)
Q Consensus 315 ~~-~~~~ 320 (323)
.+ ..++
T Consensus 231 ~~~~~~~ 237 (252)
T 1ka9_F 231 GEIPIPK 237 (252)
T ss_dssp TSSCHHH
T ss_pred CCCCHHH
Confidence 87 4443
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-06 Score=77.16 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=75.6
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.+.+.++..++ .+.|++.. +.|++++..+.+.|+|+|.++. .. . ...++.|+.++..++ ++|+++.|||.
T Consensus 92 ~d~~v~~~~~~-~g~~~i~G-~~t~~e~~~A~~~Gad~v~~fp--a~-~---~gG~~~lk~l~~~~~-~ipvvaiGGI~- 161 (207)
T 2yw3_A 92 LLEEVAALAQA-RGVPYLPG-VLTPTEVERALALGLSALKFFP--AE-P---FQGVRVLRAYAEVFP-EVRFLPTGGIK- 161 (207)
T ss_dssp CCHHHHHHHHH-HTCCEEEE-ECSHHHHHHHHHTTCCEEEETT--TT-T---TTHHHHHHHHHHHCT-TCEEEEBSSCC-
T ss_pred CCHHHHHHHHH-hCCCEEec-CCCHHHHHHHHHCCCCEEEEec--Cc-c---ccCHHHHHHHHhhCC-CCcEEEeCCCC-
Confidence 34445555555 67787774 8899999999999999999942 11 0 113566777776664 79999999997
Q ss_pred HHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 292 GTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
.+++.+.+++||++|.+|+.++. ++|.++
T Consensus 162 ~~n~~~~l~aGa~~vavgSai~~-~d~~~i 190 (207)
T 2yw3_A 162 EEHLPHYAALPNLLAVGGSWLLQ-GNLEAV 190 (207)
T ss_dssp GGGHHHHHTCSSBSCEEESGGGS-SCHHHH
T ss_pred HHHHHHHHhCCCcEEEEehhhhC-CCHHHH
Confidence 69999999999999999999887 665544
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.4e-07 Score=79.23 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=100.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc-cchhhHHHH------
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA-NDSGLAAYV------ 204 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------ 204 (323)
....+.+.++++++.+.|+.+++++ |..-.+.++. +. ..++.+..+.++|.+..... .-....+.+
T Consensus 15 ~~t~~~i~~l~~~a~~~~~~aVcv~---p~~v~~~~~~---l~-~~~v~v~~vigFP~G~~~~~~k~~e~~~Ai~~GAde 87 (220)
T 1ub3_A 15 TATLEEVAKAAEEALEYGFYGLCIP---PSYVAWVRAR---YP-HAPFRLVTVVGFPLGYQEKEVKALEAALACARGADE 87 (220)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEECC---GGGHHHHHHH---CT-TCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSE
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEC---HHHHHHHHHH---hC-CCCceEEEEecCCCCCCchHHHHHHHHHHHHcCCCE
Confidence 3457788889999999999999976 3221122221 11 11344444556776542210 000000000
Q ss_pred -------hh--ccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcch
Q 020636 205 -------AG--QIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPAT 266 (323)
Q Consensus 205 -------~~--~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~ 266 (323)
.. ..+.+...+++..+++..+.+ .+|.+ ++.++ ++.+.++|||.|..|..-+ .+..+
T Consensus 88 vd~vinig~~~~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsTGf~----~~gat 162 (220)
T 1ub3_A 88 VDMVLHLGRAKAGDLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG----PRGAS 162 (220)
T ss_dssp EEEECCHHHHHTTCHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCC
T ss_pred EEecccchhhhCCCHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCC
Confidence 00 112223355788888877544 66744 46555 5677899999999875111 12345
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 267 ~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++.+..+++.++.++||.++|||++.+|+++++.+||+.++..
T Consensus 163 ~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aGa~RiG~S 205 (220)
T 1ub3_A 163 LEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTS 205 (220)
T ss_dssp HHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCCCcccchh
Confidence 5555555665666899999999999999999999999955443
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.65 E-value=6e-08 Score=86.71 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc---CCCEEEEcccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFVSIMP 312 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l---GAd~V~iG~~~ 312 (323)
.+.++.+.+.|++.|.+.+... ........++.+.++++.+ ++||+++|||++++|+.+++++ |||+|++|++|
T Consensus 149 ~e~~~~~~~~G~~~i~~~~~~~-~~~~~g~~~~~~~~i~~~~--~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al 225 (244)
T 1vzw_A 149 YETLDRLNKEGCARYVVTDIAK-DGTLQGPNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKAL 225 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEEC--------CCCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHhCCCCEEEEeccCc-ccccCCCCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHH
Confidence 4557999999999998864221 0111224788899998877 7999999999999999999999 99999999999
Q ss_pred ccCcc
Q 020636 313 CQCPL 317 (323)
Q Consensus 313 ~~~~~ 317 (323)
+..++
T Consensus 226 ~~~~~ 230 (244)
T 1vzw_A 226 YAKAF 230 (244)
T ss_dssp HTTSS
T ss_pred HcCCC
Confidence 98874
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.3e-08 Score=87.52 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCC-CCCCCCCCcchHHHHHHHHH-HhcCC-CeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVK-ATQGR-IPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~-gg~~~~~~~~~~~~l~~i~~-~~~~~-~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
..+++.++++.+.|+++|.--+. -|+ ..+..+.+.|..+.+ .. + +|||++|||.+++|+.+++++|||+|++|
T Consensus 132 ~~D~~~ak~l~~~G~~aVmPlg~pIGs--G~Gi~~~~~L~~i~~~~~--~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVg 207 (268)
T 2htm_A 132 GPDLVLAKRLAALGTATVMPLAAPIGS--GWGVRTRALLELFAREKA--SLPPVVVDAGLGLPSHAAEVMELGLDAVLVN 207 (268)
T ss_dssp CSCHHHHHHHHHHTCSCBEEBSSSTTT--CCCSTTHHHHHHHHHTTT--TSSCBEEESCCCSHHHHHHHHHTTCCEEEES
T ss_pred CCCHHHHHHHHhcCCCEEEecCccCcC--CcccCCHHHHHHHHHhcC--CCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 47889999999999999966232 121 113445677888877 43 6 99999999999999999999999999999
Q ss_pred cccccCcchh
Q 020636 310 IMPCQCPLTE 319 (323)
Q Consensus 310 ~~~~~~~~~~ 319 (323)
+++....+-.
T Consensus 208 SAI~~a~dP~ 217 (268)
T 2htm_A 208 TAIAEAQDPP 217 (268)
T ss_dssp HHHHTSSSHH
T ss_pred hHHhCCCCHH
Confidence 9987644433
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.8e-07 Score=80.47 Aligned_cols=176 Identities=13% Similarity=0.079 Sum_probs=110.9
Q ss_pred CcHHHHHHHHHHHHcCCce-eecC-----CCCCCHHHHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 020636 86 HPEGEYATARAASAAGTIM-TLSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (323)
Q Consensus 86 ~~~~e~~~a~aa~~~G~~~-~vs~-----~s~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd 158 (323)
+.+..+.+++++. .|+.. .++. .....++++++..+ .+..+.+.. .+.. ...++.+.++|++.+.+..-
T Consensus 11 ~~~~~~~~~~~~~-~~~diie~G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~-~~~~--~~~~~~~~~~Gad~v~v~~~ 86 (211)
T 3f4w_A 11 TLPEAMVFMDKVV-DDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKI-MDGG--HFESQLLFDAGADYVTVLGV 86 (211)
T ss_dssp CHHHHHHHHHHHG-GGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEE-CSCH--HHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhh-cCccEEEeCcHHHHhccHHHHHHHHHhCCCCEEEEEEEe-ccch--HHHHHHHHhcCCCEEEEeCC
Confidence 4455667777775 46655 4552 12234566666543 344444433 2322 23478888999998887521
Q ss_pred CCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC-HHHHHHHHHhcCCCEEEe--ccCC
Q 020636 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-WKDVKWLQTITKLPILVK--GVLT 235 (323)
Q Consensus 159 ~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~vK--~i~~ 235 (323)
. . + .. .+.++.+++ .+.++++- ...+
T Consensus 87 ~-~----~---------------------------------------------~~~~~~~~~~~~-~g~~~~v~~~~~~t 115 (211)
T 3f4w_A 87 T-D----V---------------------------------------------LTIQSCIRAAKE-AGKQVVVDMICVDD 115 (211)
T ss_dssp S-C----H---------------------------------------------HHHHHHHHHHHH-HTCEEEEECTTCSS
T ss_pred C-C----h---------------------------------------------hHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 1 0 0 01 123444444 36666553 2334
Q ss_pred H-HHHHHHHHcCCCEEEEcCC-CCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 236 A-EDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 236 ~-e~a~~~~~~Gad~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
+ +.++.+.+.|+|.|.+... +|... .+..++.+.++++.++ ++||+++|||+ ++++.+++++|||+|.+||+++
T Consensus 116 ~~~~~~~~~~~g~d~i~v~~g~~g~~~--~~~~~~~i~~l~~~~~-~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~ 191 (211)
T 3f4w_A 116 LPARVRLLEEAGADMLAVHTGTDQQAA--GRKPIDDLITMLKVRR-KARIAVAGGIS-SQTVKDYALLGPDVVIVGSAIT 191 (211)
T ss_dssp HHHHHHHHHHHTCCEEEEECCHHHHHT--TCCSHHHHHHHHHHCS-SCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccccc--CCCCHHHHHHHHHHcC-CCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHc
Confidence 4 6689999999999887531 11111 1235678888887653 69999999996 9999999999999999999998
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..++..+
T Consensus 192 ~~~d~~~ 198 (211)
T 3f4w_A 192 HAADPAG 198 (211)
T ss_dssp TCSSHHH
T ss_pred CCCCHHH
Confidence 8766443
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=6e-07 Score=80.48 Aligned_cols=191 Identities=10% Similarity=0.096 Sum_probs=113.9
Q ss_pred HHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHh---hc
Q 020636 96 AASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK---NR 172 (323)
Q Consensus 96 aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~---~~ 172 (323)
...+.|...++.+ +.++.|...++ ..|+.. +.+ ..+.|+.+|-|-.|...++-...+++ ..
T Consensus 39 ~~~~~~~~~iIAE--------iKraSPSkg~i----~~dp~~---iA~-~~~~GA~aiSVLTd~~~F~Gs~~~L~~vr~~ 102 (258)
T 4a29_A 39 EFNKRNITAIIAV--------YERKSPSGLDV----ERDPIE---YAK-FMERYAVGLSITTEEKYFNGSYETLRKIASS 102 (258)
T ss_dssp HHHHTTCCCEEEE--------ECSBCTTSCBC----CCCHHH---HHH-HHTTTCSEEEEECCSTTTCCCHHHHHHHHTT
T ss_pred HHhhCCCcEEEEE--------EecCCCCCCCc----cCCHHH---HHH-HHhCCCeEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 3344555545544 44555633332 235543 233 33579999988888888765555543 22
Q ss_pred cCCCCccccccccccccCCCccccchhhHHHHhhccCCccC------HHHHHHH---HHhcCCCEEEeccCCHHHHHHHH
Q 020636 173 FTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS------WKDVKWL---QTITKLPILVKGVLTAEDARIAV 243 (323)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~i---~~~~~~pv~vK~i~~~e~a~~~~ 243 (323)
..+| + ++ .+|...+. .+.+.....-|.-+- .+.++.+ ....+.-+++ .+.+.++.+++.
T Consensus 103 v~lP--v-Lr--KDFiid~y------QI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~Lv-EVh~~~El~rAl 170 (258)
T 4a29_A 103 VSIP--I-LM--SDFIVKES------QIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLI-LINDENDLDIAL 170 (258)
T ss_dssp CSSC--E-EE--ESCCCSHH------HHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEE-EESSHHHHHHHH
T ss_pred cCCC--E-ee--ccccccHH------HHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHH-hcchHHHHHHHh
Confidence 2333 0 11 12222221 111111111122221 1223333 2334554443 567888888888
Q ss_pred HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 244 ~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
++|++.|-|.|+ .+.+-..+++...++...++.++.+|+.+||++++|+.++...|+++|.||..|+..|+
T Consensus 171 ~~~a~iIGINNR---nL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d 241 (258)
T 4a29_A 171 RIGARFIGIMSR---DFETGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPE 241 (258)
T ss_dssp HTTCSEEEECSB---CTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTT
T ss_pred cCCCcEEEEeCC---CccccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCc
Confidence 999988888664 33334455666666777777789999999999999999999999999999999998876
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.64 E-value=6.3e-08 Score=86.93 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.++.+.+.|++.|.++..... .......++.+.++++.+ ++|||++|||++.+|+.+++++|||+|++|++++..
T Consensus 154 ~e~~~~~~~~G~~~i~~~~~~~~-g~~~g~~~~~~~~l~~~~--~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 154 RDWVVEVEKRGAGEILLTSIDRD-GTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTT-TSCSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHCCCCEEEEEeccCC-CCCCCCCHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 56689999999999988532111 111224688888888766 799999999999999999999999999999999988
Q ss_pred c-chhh
Q 020636 316 P-LTEK 320 (323)
Q Consensus 316 ~-~~~~ 320 (323)
+ ..++
T Consensus 231 ~~~~~~ 236 (253)
T 1thf_D 231 EIDVRE 236 (253)
T ss_dssp CSCHHH
T ss_pred CCCHHH
Confidence 7 4443
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.3e-08 Score=86.83 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.++.+.+.|++.|.+++...... ...+.++.+.++++.+ ++|||++|||++++|+.+++.+|||+|++|++|+..
T Consensus 159 ~e~~~~~~~~G~~~i~~t~~~~~g~-~~g~~~~~i~~l~~~~--~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~ 235 (266)
T 2w6r_A 159 RDWVVEVEKRGAGEILLTSIDRDGT-KSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 235 (266)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTT-CSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC--
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCC-cCCCCHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcC
Confidence 4557999999999999854221111 1224688888888776 899999999999999999999999999999999988
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
++
T Consensus 236 ~~ 237 (266)
T 2w6r_A 236 EI 237 (266)
T ss_dssp --
T ss_pred CC
Confidence 73
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.1e-07 Score=80.39 Aligned_cols=172 Identities=14% Similarity=0.142 Sum_probs=109.0
Q ss_pred eeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhh--
Q 020636 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG-- 206 (323)
Q Consensus 129 Ly~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 206 (323)
+....+.+...++++.+.+.|++.+-+|..+|..-.-.+.++..+ |. +.+ +. +...+ ..........
T Consensus 39 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~--~~-~~i----Ga--GTVlt--~~~a~~Ai~AGA 107 (232)
T 4e38_A 39 VIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQ--PE-MLI----GA--GTILN--GEQALAAKEAGA 107 (232)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TT-CEE----EE--ECCCS--HHHHHHHHHHTC
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CC-CEE----eE--CCcCC--HHHHHHHHHcCC
Confidence 333456677777777777788888888887765322333444444 21 110 00 00000 0000000000
Q ss_pred --ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 207 --QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 207 --~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
-..|.++.+.++..++. ++|++. |+.|+.++..+.++|+|.|.+.-.. . ....+.|+.++..++ ++|++
T Consensus 108 ~fIvsP~~~~~vi~~~~~~-gi~~ip-Gv~TptEi~~A~~~Gad~vK~FPa~--~----~gG~~~lkal~~p~p-~ip~~ 178 (232)
T 4e38_A 108 TFVVSPGFNPNTVRACQEI-GIDIVP-GVNNPSTVEAALEMGLTTLKFFPAE--A----SGGISMVKSLVGPYG-DIRLM 178 (232)
T ss_dssp SEEECSSCCHHHHHHHHHH-TCEEEC-EECSHHHHHHHHHTTCCEEEECSTT--T----TTHHHHHHHHHTTCT-TCEEE
T ss_pred CEEEeCCCCHHHHHHHHHc-CCCEEc-CCCCHHHHHHHHHcCCCEEEECcCc--c----ccCHHHHHHHHHHhc-CCCee
Confidence 11355677778877664 776655 7889999999999999999985421 0 113577777766554 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEcccccc-----Ccchhhh
Q 020636 285 LDGGVRRGTDVFKALALGASGIFVSIMPCQ-----CPLTEKI 321 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~iG~~~~~-----~~~~~~~ 321 (323)
+.|||. .+.+.+++++||.++++|+.+.. ..+|++|
T Consensus 179 ptGGI~-~~n~~~~l~aGa~~~vgGs~l~~~~~i~~~~~~~i 219 (232)
T 4e38_A 179 PTGGIT-PSNIDNYLAIPQVLACGGTWMVDKKLVTNGEWDEI 219 (232)
T ss_dssp EBSSCC-TTTHHHHHTSTTBCCEEECGGGCHHHHHTTCHHHH
T ss_pred eEcCCC-HHHHHHHHHCCCeEEEECchhcChHHhhcCCHHHH
Confidence 999995 89999999999999999998754 3456555
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-06 Score=85.38 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=78.8
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHH
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ 296 (323)
++..++ .+. ..+-.+.+.++++++.++|+|.|-+.|++-+ +...+++...++.+.++.++++|+.|||+|++|+.
T Consensus 150 ~~~a~~-lgm-~~LvEvh~~eE~~~A~~lga~iIGinnr~L~---t~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~ 224 (452)
T 1pii_A 150 AAVAHS-LEM-GVLTEVSNEEEQERAIALGAKVVGINNRDLR---DLSIDLNRTRELAPKLGHNVTVISESGINTYAQVR 224 (452)
T ss_dssp HHHHHH-TTC-EEEEEECSHHHHHHHHHTTCSEEEEESEETT---TTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHH
T ss_pred HHHHHH-cCC-eEEEEeCCHHHHHHHHHCCCCEEEEeCCCCC---CCCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHH
Confidence 334444 454 4455789999999999999999999886543 23455777777777777678999999999999999
Q ss_pred HHHHcCCCEEEEccccccCcchhh
Q 020636 297 KALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 297 kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
++..+ |++|.||+.|+..++.++
T Consensus 225 ~~~~~-a~avLVGealmr~~d~~~ 247 (452)
T 1pii_A 225 ELSHF-ANGFLIGSALMAHDDLHA 247 (452)
T ss_dssp HHTTT-CSEEEECHHHHTCSCHHH
T ss_pred HHHHh-CCEEEEcHHHcCCcCHHH
Confidence 99999 999999999999887654
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.6e-07 Score=83.03 Aligned_cols=189 Identities=17% Similarity=0.123 Sum_probs=116.5
Q ss_pred ccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcC-C-CceeEEeeecCC----h--HHHHH
Q 020636 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-P-GIRFFQLYVYKD----R--NVVAQ 140 (323)
Q Consensus 69 ~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~-~-~~~~~QLy~~~d----~--~~~~~ 140 (323)
.+..|+.++||... ..+ ..+++++.+.|+..++.+. ..++.+.+.. . .+..+|+....+ . +...+
T Consensus 31 ~id~~~~l~p~~~~--~~~---~~~~~~~~~~g~~~i~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~~ 103 (273)
T 2qjg_A 31 PMDHGVSNGPIKGL--IDI---RKTVNDVAEGGANAVLLHK--GIVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIVT 103 (273)
T ss_dssp ECCHHHHHCSCTTS--SSH---HHHHHHHHHHTCSEEEECH--HHHHSCCCSSSCCCEEEEECEECCTTSSSTTCCEECS
T ss_pred EcccccccCCCcch--hhH---HHHHHHHHhcCCCEEEeCH--HHHHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHHH
Confidence 34567777887432 222 2789999999998876532 0111111111 1 245667654321 1 11134
Q ss_pred HHHHHHHcCCcEE--EEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 141 LVRRAERAGFKAI--ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 141 ~~~~a~~~G~~al--~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
.++++.+.|++.+ .++..++.. .+ .+ ...+.+.
T Consensus 104 ~v~~a~~~Ga~~v~~~l~~~~~~~----~~----------------------------------~~-------~~~~~v~ 138 (273)
T 2qjg_A 104 TVEEAIRMGADAVSIHVNVGSDED----WE----------------------------------AY-------RDLGMIA 138 (273)
T ss_dssp CHHHHHHTTCSEEEEEEEETSTTH----HH----------------------------------HH-------HHHHHHH
T ss_pred HHHHHHHcCCCEEEEEEecCCCCH----HH----------------------------------HH-------HHHHHHH
Confidence 5677888999998 444332210 00 00 0112233
Q ss_pred HHHHhcCCCEEEecc---------CCH---HHH-HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 219 WLQTITKLPILVKGV---------LTA---EDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 219 ~i~~~~~~pv~vK~i---------~~~---e~a-~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.+.++.|+++... .+. +++ +.+.+.|+|+|.++. +..++.+.++.+.+ ++||++
T Consensus 139 ~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~---------~~~~~~l~~i~~~~--~ipvva 207 (273)
T 2qjg_A 139 ETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSY---------TGDIDSFRDVVKGC--PAPVVV 207 (273)
T ss_dssp HHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC---------CSSHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC---------CCCHHHHHHHHHhC--CCCEEE
Confidence 333346888888631 333 344 888999999999863 13578888888877 799999
Q ss_pred ecCCCC--HHH----HHHHHHcCCCEEEEccccccCcchhh
Q 020636 286 DGGVRR--GTD----VFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 286 ~GGI~~--~~d----i~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
.|||++ .+| +.+++.+||++|.+|+.++..++-.+
T Consensus 208 ~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~ 248 (273)
T 2qjg_A 208 AGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVG 248 (273)
T ss_dssp ECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHH
Confidence 999995 778 55556799999999999998876544
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-06 Score=75.54 Aligned_cols=167 Identities=20% Similarity=0.155 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc-cchhhHHHHh------
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA-NDSGLAAYVA------ 205 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------ 205 (323)
...+.+.++++++.+.|+.+++++ |..-.+.+ ..+ .. +.+..+.+||.+..... .-....+ +.
T Consensus 14 ~t~~~i~~l~~~A~~~~~~aVcv~---p~~v~~a~---~~l--~g-v~v~tvigFP~G~~~~~~k~~E~~~-i~~GAdEI 83 (226)
T 1vcv_A 14 LTVDEAVAGARKAEELGVAAYCVN---PIYAPVVR---PLL--RK-VKLCVVADFPFGALPTASRIALVSR-LAEVADEI 83 (226)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEC---GGGHHHHG---GGC--SS-SEEEEEESTTTCCSCHHHHHHHHHH-HTTTCSEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEC---HHHHHHHH---HHh--CC-CeEEEEeCCCCCCCchHHHHHHHHH-HHCCCCEE
Confidence 457788889999999999999976 32211212 212 11 44445566766542210 0000000 00
Q ss_pred ---------hccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCC------CCC
Q 020636 206 ---------GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGAR------QLD 261 (323)
Q Consensus 206 ---------~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~------~~~ 261 (323)
..++.+...++|+.+++..+. ..+|.+ ++.++ ++.+.++|+|.|..|..-+. ..+
T Consensus 84 D~Vinig~~~~g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~ 162 (226)
T 1vcv_A 84 DVVAPIGLVKSRRWAEVRRDLISVVGAAGG-RVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGN 162 (226)
T ss_dssp EEECCHHHHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTC
T ss_pred EEecchhhhcCCCHHHHHHHHHHHHHHHcC-CCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccccCC
Confidence 012222334578888887643 366743 56555 46678999999998742110 001
Q ss_pred CCcch---HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc---CCC----EEEEcc
Q 020636 262 YVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GAS----GIFVSI 310 (323)
Q Consensus 262 ~~~~~---~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l---GAd----~V~iG~ 310 (323)
.+..+ .+++.+..+.++++++|-++||||+.+|+++++.+ ||+ .++..+
T Consensus 163 ~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS~ 221 (226)
T 1vcv_A 163 PVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCCcCCceEecCc
Confidence 12334 44444444447678999999999999999999999 999 776654
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=7.5e-07 Score=85.69 Aligned_cols=45 Identities=16% Similarity=-0.001 Sum_probs=38.8
Q ss_pred HHHHhcCCCeEEEecCCCCHHHHHHHHHc-CCCEEEEccccccCcchh
Q 020636 273 VVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 273 i~~~~~~~~pvia~GGI~~~~di~kal~l-GAd~V~iG~~~~~~~~~~ 319 (323)
+++.+ ++|||+.||+.+..++.+.+.. +||.|.+||+|+.+|+|-
T Consensus 313 ir~~~--~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~iadPdl~ 358 (400)
T 4gbu_A 313 VYSIW--KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLV 358 (400)
T ss_dssp HHHHC--CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHH
T ss_pred HHHHh--CCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHHCcHHH
Confidence 45556 7999999999999898888875 599999999999999874
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-06 Score=79.73 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=95.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+.+...+.++.+++.|++.|-+.+ |... | ...++.- .....+.+........
T Consensus 28 p~~~~~~~~~~~l~~~G~D~IElG~--P~sd------------P----------~adgp~i---~~a~~~al~~G~~~~~ 80 (262)
T 2ekc_A 28 PDYETSLKAFKEVLKNGTDILEIGF--PFSD------------P----------VADGPTI---QVAHEVALKNGIRFED 80 (262)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEEC--CCSC------------C----------TTSCHHH---HHHHHHHHHTTCCHHH
T ss_pred CChHHHHHHHHHHHHcCCCEEEECC--CCCC------------c----------ccccHHH---HHHHHHHHHcCCCHHH
Confidence 3456777888999999999988754 4310 0 0000000 0000111111112223
Q ss_pred CHHHHHHHHHhc-CCCEEEeccCC-------HHHHHHHHHcCCCEEEEcC---------------CCCC-----CC----
Q 020636 213 SWKDVKWLQTIT-KLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGAR-----QL---- 260 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~i~~-------~e~a~~~~~~Gad~i~vs~---------------~gg~-----~~---- 260 (323)
..+.++++|+.+ ++|+++=+-.+ .+.++.+.++|+|++++.. ||-. ..
T Consensus 81 ~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~ 160 (262)
T 2ekc_A 81 VLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTR 160 (262)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCH
T ss_pred HHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 456789999988 88987722111 4667889999999998732 1100 00
Q ss_pred -------------------C---CCc-----c-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 261 -------------------D---YVP-----A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 261 -------------------~---~~~-----~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
. +.. . ..+.+.++++.. ++||++.+||++++++.+ +..|||+|.+|+++
T Consensus 161 ~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~--~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai 237 (262)
T 2ekc_A 161 KRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELC--DKPVVVGFGVSKKEHARE-IGSFADGVVVGSAL 237 (262)
T ss_dssp HHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHC--CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHH
T ss_pred HHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHH
Confidence 0 000 1 225677777766 799999999999999999 88899999999998
Q ss_pred ccC
Q 020636 313 CQC 315 (323)
Q Consensus 313 ~~~ 315 (323)
...
T Consensus 238 ~~~ 240 (262)
T 2ekc_A 238 VKL 240 (262)
T ss_dssp HHH
T ss_pred Hhh
Confidence 754
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-07 Score=92.24 Aligned_cols=80 Identities=19% Similarity=0.131 Sum_probs=66.4
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCCCEEEEccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFVSIMPC 313 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-lGAd~V~iG~~~~ 313 (323)
..+.++.+.++|++.|++.+........+ ++++++.++.+.+ ++|||++|||++.+|+.+++. +||++|++|++|.
T Consensus 454 ~~e~a~~~~~~Ga~~il~t~~~~dG~~~G-~d~~li~~l~~~~--~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~ 530 (555)
T 1jvn_A 454 VWELTRACEALGAGEILLNCIDKDGSNSG-YDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFH 530 (555)
T ss_dssp HHHHHHHHHHTTCCEEEECCGGGTTTCSC-CCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHhC--CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHH
Confidence 36889999999999999854221111123 4899999999988 899999999999999999998 8999999999998
Q ss_pred cCcc
Q 020636 314 QCPL 317 (323)
Q Consensus 314 ~~~~ 317 (323)
..++
T Consensus 531 ~~~~ 534 (555)
T 1jvn_A 531 RGEF 534 (555)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 8765
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=84.75 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-----C-CCEEEEc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-ASGIFVS 309 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l-----G-Ad~V~iG 309 (323)
.|.++.+.+.|++.|.+++....... ..++++.+.++++.+ ++|||++|||++++|+.+++.+ | ||+|++|
T Consensus 147 ~e~~~~~~~~G~~~i~~t~~~~~g~~-~g~~~~~i~~l~~~~--~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vg 223 (241)
T 1qo2_A 147 VSLLKRLKEYGLEEIVHTEIEKDGTL-QEHDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVG 223 (241)
T ss_dssp HHHHHHHHTTTCCEEEEEETTHHHHT-CCCCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEEeecccccC-CcCCHHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEee
Confidence 34478899999999998654311111 124689999999888 8999999999999999999998 9 9999999
Q ss_pred cccccCcc
Q 020636 310 IMPCQCPL 317 (323)
Q Consensus 310 ~~~~~~~~ 317 (323)
++|+..+.
T Consensus 224 sal~~~~~ 231 (241)
T 1qo2_A 224 RAFLEGIL 231 (241)
T ss_dssp HHHHTTSS
T ss_pred HHHHcCCC
Confidence 99987664
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.3e-07 Score=80.81 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=63.3
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+.++.+.+.|+|.|.+.+...... .....++.+.++++.+ ++||+++|||++.+|+.+++++||++|++|+.++.
T Consensus 156 ~~e~~~~~~~~G~d~i~~~~~~~~g~-~~~~~~~~i~~l~~~~--~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 156 AVKWAKEVEELGAGEILLTSIDRDGT-GLGYDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTTTT-CSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHHHHHhCCCCEEEEecccCCCC-cCcCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 35678999999999998854221100 1123678888888876 89999999999999999999999999999999987
Q ss_pred Cc
Q 020636 315 CP 316 (323)
Q Consensus 315 ~~ 316 (323)
.+
T Consensus 233 ~~ 234 (253)
T 1h5y_A 233 RV 234 (253)
T ss_dssp TS
T ss_pred CC
Confidence 65
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=83.72 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=65.8
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+.|+.+.+.|+|.|.++...+. .......++.+.++++.+ ++||++.|||++.+|+.++++.|||+|++|+.++.
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~ 113 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSIDRD-GTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVE 113 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTT-TCSSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEecCcc-cCCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhh
Confidence 356688899999999988643211 112245678888888877 89999999999999999999999999999999998
Q ss_pred Ccch
Q 020636 315 CPLT 318 (323)
Q Consensus 315 ~~~~ 318 (323)
+|++
T Consensus 114 dp~~ 117 (247)
T 3tdn_A 114 NPSL 117 (247)
T ss_dssp CTHH
T ss_pred ChHH
Confidence 8863
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.3e-07 Score=82.36 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=67.2
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.+.+.++++.+.+.|+|+|.+++-..+. .+..+..++.+.++.+....++||++.||| +.+++.+++++||++|.+|
T Consensus 141 S~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~ 219 (243)
T 3o63_A 141 STHDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVV 219 (243)
T ss_dssp EECSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEES
T ss_pred eCCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEe
Confidence 4689999999999999999997632221 111234577788776542237999999999 9999999999999999999
Q ss_pred cccccCcchhh
Q 020636 310 IMPCQCPLTEK 320 (323)
Q Consensus 310 ~~~~~~~~~~~ 320 (323)
+.++..++-.+
T Consensus 220 sai~~a~dp~~ 230 (243)
T 3o63_A 220 RAITSADDPRA 230 (243)
T ss_dssp HHHHTCSSHHH
T ss_pred HHHhCCCCHHH
Confidence 99998776544
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.7e-07 Score=79.57 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=78.6
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCC-----------------------------------
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH----------------------------------- 255 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~----------------------------------- 255 (323)
...+.++.+.+.+.+|+.+. |+.+.++++.++++|||.|++...
T Consensus 62 ~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~ 141 (243)
T 4gj1_A 62 RQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVA 141 (243)
T ss_dssp CCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC
T ss_pred hHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEE
Confidence 45778999999999999998 578999999999999999988421
Q ss_pred --CCCC---C------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCC
Q 020636 256 --GARQ---L------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 256 --gg~~---~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd 304 (323)
|++. . || ..+.++++..+.+.++ ++|||++||+++.+|+.+ |..+++
T Consensus 142 ~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~~-~ipviasGGv~~~~Dl~~-l~~~~~ 219 (243)
T 4gj1_A 142 VNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFP-NICIQASGGVASLKDLEN-LKGICS 219 (243)
T ss_dssp --------CCBHHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHHHHHHCT-TSEEEEESCCCSHHHHHH-TTTTCS
T ss_pred ecCceecccchHHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHHHHHhcC-CCCEEEEcCCCCHHHHHH-HHccCc
Confidence 1100 0 12 2456788888877653 699999999999999976 466799
Q ss_pred EEEEcccccc
Q 020636 305 GIFVSIMPCQ 314 (323)
Q Consensus 305 ~V~iG~~~~~ 314 (323)
+|.+|++|..
T Consensus 220 gvivg~Al~~ 229 (243)
T 4gj1_A 220 GVIVGKALLD 229 (243)
T ss_dssp EEEECHHHHT
T ss_pred hhehHHHHHC
Confidence 9999999854
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.2e-06 Score=74.98 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=73.3
Q ss_pred CccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
|..+.+.++..++ .+.|+++ |+.|++++..+.+.|+|+|.+.. .. .....+.|++++..++ ++|+++.|||
T Consensus 96 p~~d~~v~~~ar~-~g~~~i~-Gv~t~~e~~~A~~~Gad~vk~Fp--a~----~~gG~~~lk~l~~~~~-~ipvvaiGGI 166 (224)
T 1vhc_A 96 PGLNPKIVKLCQD-LNFPITP-GVNNPMAIEIALEMGISAVKFFP--AE----ASGGVKMIKALLGPYA-QLQIMPTGGI 166 (224)
T ss_dssp SSCCHHHHHHHHH-TTCCEEC-EECSHHHHHHHHHTTCCEEEETT--TT----TTTHHHHHHHHHTTTT-TCEEEEBSSC
T ss_pred CCCCHHHHHHHHH-hCCCEEe-ccCCHHHHHHHHHCCCCEEEEee--Cc----cccCHHHHHHHHhhCC-CCeEEEECCc
Confidence 3455666777777 7778776 58999999999999999999933 11 1113677777776664 6999999999
Q ss_pred CCHHHHHHHHHc-CCCEEEEccccccC
Q 020636 290 RRGTDVFKALAL-GASGIFVSIMPCQC 315 (323)
Q Consensus 290 ~~~~di~kal~l-GAd~V~iG~~~~~~ 315 (323)
+.+.+.+.+++ |+++|. |+.++..
T Consensus 167 -~~~N~~~~l~agga~~v~-gS~i~~~ 191 (224)
T 1vhc_A 167 -GLHNIRDYLAIPNIVACG-GSWFVEK 191 (224)
T ss_dssp -CTTTHHHHHTSTTBCCEE-ECGGGCH
T ss_pred -CHHHHHHHHhcCCCEEEE-EchhcCc
Confidence 55889999998 899999 9888764
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=76.49 Aligned_cols=84 Identities=23% Similarity=0.237 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+.+.+++..+.+.|+|+|.+++. ++......+..++.+.++++.. ++||++.|||. ++++.+++.+||++|.+|+
T Consensus 115 ~~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs 191 (215)
T 1xi3_A 115 VYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGIN-KDNAREVLKTGVDGIAVIS 191 (215)
T ss_dssp ESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSCC-TTTHHHHHTTTCSEEEESH
T ss_pred cCCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC--CCCEEEECCcC-HHHHHHHHHcCCCEEEEhH
Confidence 47888899999999999998651 2111112345778888888776 79999999999 9999999999999999999
Q ss_pred ccccCcchh
Q 020636 311 MPCQCPLTE 319 (323)
Q Consensus 311 ~~~~~~~~~ 319 (323)
.+...++..
T Consensus 192 ~i~~~~d~~ 200 (215)
T 1xi3_A 192 AVMGAEDVR 200 (215)
T ss_dssp HHHTSSSHH
T ss_pred HHhCCCCHH
Confidence 998877653
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-07 Score=78.85 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=71.9
Q ss_pred HHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcC--CCCCCCC-CCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 217 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--HGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~--~gg~~~~-~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
+..+++..+. ++++. +.+.+++..+.+.|+|+|.++. .++.... +.+..++.+.++++.++ ++||++.|||. +
T Consensus 107 ~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~-~~pvia~GGI~-~ 183 (227)
T 2tps_A 107 AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI-SIPIVGIGGIT-I 183 (227)
T ss_dssp HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTC-CCCEEEESSCC-T
T ss_pred HHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCC-CCCEEEEcCCC-H
Confidence 4445555554 33332 4788889999999999999742 1111111 23446778888877662 39999999999 9
Q ss_pred HHHHHHHHcCCCEEEEccccccCcch
Q 020636 293 TDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+++.+++.+||++|.+|+.+...++.
T Consensus 184 ~nv~~~~~~Ga~gv~vgs~i~~~~d~ 209 (227)
T 2tps_A 184 DNAAPVIQAGADGVSMISAISQAEDP 209 (227)
T ss_dssp TTSHHHHHTTCSEEEESHHHHTSSCH
T ss_pred HHHHHHHHcCCCEEEEhHHhhcCCCH
Confidence 99999999999999999999876554
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=78.88 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=70.0
Q ss_pred CHHHHHHHHHhcCCCEEEec----c---CCHHHHHHHHHcCCCEEEEcCC---------------CC--------CC---
Q 020636 213 SWKDVKWLQTITKLPILVKG----V---LTAEDARIAVQAGAAGIIVSNH---------------GA--------RQ--- 259 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~----i---~~~e~a~~~~~~Gad~i~vs~~---------------gg--------~~--- 259 (323)
..+.++++|+..++|+++=+ + .....++.+.++|+|++++-.- |- ..
T Consensus 79 ~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~e 158 (271)
T 1ujp_A 79 ALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDA 158 (271)
T ss_dssp HHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHH
T ss_pred HHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHH
Confidence 35779999988889988721 2 2245678899999998876321 10 00
Q ss_pred -----------------CC---CC-----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 260 -----------------LD---YV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 260 -----------------~~---~~-----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.. +. ....+.+.++++.. ++||++.|||++++++.++ .|||+|.+|+++..
T Consensus 159 ri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~ 234 (271)
T 1ujp_A 159 RIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVR 234 (271)
T ss_dssp HHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc--CCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhc
Confidence 00 00 11245677777665 7999999999999999996 99999999998865
Q ss_pred C
Q 020636 315 C 315 (323)
Q Consensus 315 ~ 315 (323)
.
T Consensus 235 ~ 235 (271)
T 1ujp_A 235 A 235 (271)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.7e-06 Score=75.62 Aligned_cols=89 Identities=29% Similarity=0.397 Sum_probs=67.9
Q ss_pred hcCCCEEEeccC---------CHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 223 ITKLPILVKGVL---------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 223 ~~~~pv~vK~i~---------~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
.+++|+++=.-. +.+. ++.+.++|+|+|.++. . .+.+.+.++++.+ +.+||+++|||
T Consensus 136 ~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~-~--------~~~e~~~~~~~~~-~~~pV~asGGi 205 (263)
T 1w8s_A 136 KFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKY-T--------GDPKTFSWAVKVA-GKVPVLMSGGP 205 (263)
T ss_dssp HHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEEC-C--------SSHHHHHHHHHHT-TTSCEEEECCS
T ss_pred HcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcC-C--------CCHHHHHHHHHhC-CCCeEEEEeCC
Confidence 357887664222 4444 4677899999999973 1 2567788888777 23599999999
Q ss_pred C--CHHHHHHHH----HcCCCEEEEccccccCcchhhh
Q 020636 290 R--RGTDVFKAL----ALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 290 ~--~~~di~kal----~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+ +.+|+++.+ +.||+++.+||.++..++-.+.
T Consensus 206 ~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~dp~~~ 243 (263)
T 1w8s_A 206 KTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKF 243 (263)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcCHHHH
Confidence 9 889988877 8999999999999988876554
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.36 E-value=9.5e-06 Score=71.71 Aligned_cols=191 Identities=14% Similarity=0.133 Sum_probs=109.3
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecC----C---CCCCH---HHHHhcCCCceeEEeeecCChHHHHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSS----W---STSSV---EEVASTGPGIRFFQLYVYKDRNVVAQ 140 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~----~---s~~~~---eei~~~~~~~~~~QLy~~~d~~~~~~ 140 (323)
.|+.++|.=.. ..+..-...++++.+.|+.++ +.. + .+..+ +++++..+.+..+-+|.. |++ +
T Consensus 9 ~~~~i~p~i~a--~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vn-d~~---~ 82 (230)
T 1rpx_A 9 SDIIVSPSILS--ANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIV-EPD---Q 82 (230)
T ss_dssp TSCEEEEBGGG--SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESS-SHH---H
T ss_pred CceEEEEEeec--CCHHHHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEec-CHH---H
Confidence 34445553221 234333467778888886543 321 1 12233 344444334566777753 433 5
Q ss_pred HHHHHHHcCCcEEEEecC--CCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 141 LVRRAERAGFKAIALTVD--TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 141 ~~~~a~~~G~~al~itvd--~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
.++.+.++|++.+.++.+ .+. ...+.++
T Consensus 83 ~v~~~~~~Gad~v~vh~~~~~~~--------------------------------------------------~~~~~~~ 112 (230)
T 1rpx_A 83 RVPDFIKAGADIVSVHCEQSSTI--------------------------------------------------HLHRTIN 112 (230)
T ss_dssp HHHHHHHTTCSEEEEECSTTTCS--------------------------------------------------CHHHHHH
T ss_pred HHHHHHHcCCCEEEEEecCccch--------------------------------------------------hHHHHHH
Confidence 677778899999877643 210 0123455
Q ss_pred HHHHhcCCCEEEecc-CCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCCH
Q 020636 219 WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRG 292 (323)
Q Consensus 219 ~i~~~~~~pv~vK~i-~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~ 292 (323)
.+++. +..+.+-.. .+..+.......++|+|.+... |+......+..++.+.++++.++ .++|++++|||+ +
T Consensus 113 ~~~~~-g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~ 190 (230)
T 1rpx_A 113 QIKSL-GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-P 190 (230)
T ss_dssp HHHHT-TSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-T
T ss_pred HHHHc-CCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-H
Confidence 55553 433332221 3344444444578998854332 21111112334556666665542 268999999999 7
Q ss_pred HHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 293 TDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+.+.+++++|||+|.+||++...++..+
T Consensus 191 ~n~~~~~~aGad~vvvgSaI~~a~dp~~ 218 (230)
T 1rpx_A 191 KNAYKVIEAGANALVAGSAVFGAPDYAE 218 (230)
T ss_dssp TTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred HHHHHHHHcCCCEEEEChhhhCCCCHHH
Confidence 8888889999999999999998776543
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=98.35 E-value=6e-06 Score=74.87 Aligned_cols=200 Identities=17% Similarity=0.219 Sum_probs=119.1
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCC---------CC------------C---HHHHHhcCC-Cce
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---------TS------------S---VEEVASTGP-GIR 125 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s---------~~------------~---~eei~~~~~-~~~ 125 (323)
..||+-+..| .+ -.|+.+.+.|+.+++--.| |. . -+||..... -|.
T Consensus 27 ~~~iig~gaG-tG--------lsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v~~iPV 97 (286)
T 2p10_A 27 GEPIIGGGAG-TG--------LSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPV 97 (286)
T ss_dssp TCCEEEEEES-SH--------HHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCE
T ss_pred CCceEEEecc-cc--------hhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccCCCCCE
Confidence 4577766543 33 4899999999988865311 10 0 123443332 578
Q ss_pred eEEeeecCCh-HHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHH
Q 020636 126 FFQLYVYKDR-NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 126 ~~QLy~~~d~-~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
++|+.. .|+ ..+...++.++++||.++ +| .|..|.-.-.+|+.+ .
T Consensus 98 ~Agv~~-~DP~~~~g~~Le~lk~~Gf~Gv-~N--~ptvglidG~fr~~L---------------------------E--- 143 (286)
T 2p10_A 98 LAGVNG-TDPFMVMSTFLRELKEIGFAGV-QN--FPTVGLIDGLFRQNL---------------------------E--- 143 (286)
T ss_dssp EEEECT-TCTTCCHHHHHHHHHHHTCCEE-EE--CSCGGGCCHHHHHHH---------------------------H---
T ss_pred EEEECC-cCCCcCHHHHHHHHHHhCCceE-EE--CCCcccccchhhhhH---------------------------h---
Confidence 999654 444 356677789999999998 55 354332111111100 0
Q ss_pred hhccCCccCHH----HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC---CCCC-CCCCcc--h-HHHHHHH
Q 020636 205 AGQIDRSLSWK----DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH---GARQ-LDYVPA--T-IMALEEV 273 (323)
Q Consensus 205 ~~~~~~~~~~~----~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~---gg~~-~~~~~~--~-~~~l~~i 273 (323)
.....++ .|+..++. ++ +.+--+.++++|+.+.++|+|.|++.-. |+.- .....+ . .+.+.++
T Consensus 144 ----E~gm~~~~eve~I~~A~~~-gL-~Ti~~v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i 217 (286)
T 2p10_A 144 ----ETGMSYAQEVEMIAEAHKL-DL-LTTPYVFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINEC 217 (286)
T ss_dssp ----HTTCCHHHHHHHHHHHHHT-TC-EECCEECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHH
T ss_pred ----hcCCCHHHHHHHHHHHHHC-CC-eEEEecCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHH
Confidence 1112332 33333332 32 3444468999999999999999998542 1110 011111 1 2344444
Q ss_pred HHH---hcCCCeEEEec-CCCCHHHHHHHHHc--CCCEEEEccccccCcchhh
Q 020636 274 VKA---TQGRIPVFLDG-GVRRGTDVFKALAL--GASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 274 ~~~---~~~~~pvia~G-GI~~~~di~kal~l--GAd~V~iG~~~~~~~~~~~ 320 (323)
.++ +..++-|+.-| ||.+++|+.+++.+ |++++..++.+..-| +++
T Consensus 218 ~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gASsier~p-~e~ 269 (286)
T 2p10_A 218 IEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGASSMERLP-AEE 269 (286)
T ss_dssp HHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESHHHHHHH-HHH
T ss_pred HHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEeehhhhcCC-HHH
Confidence 433 34467777766 99999999999999 999999999988777 443
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-05 Score=68.15 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCCEEEecc-CC-HHHHHHHHHc--CCCEEEEcC-CCC-CCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 215 KDVKWLQTITKLPILVKGV-LT-AEDARIAVQA--GAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i-~~-~e~a~~~~~~--Gad~i~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.++.+++. +.++++-.- .+ .+..+...+. ++|+|.+.. ++| ..-...+..++.+.++++..+ ++||+++||
T Consensus 104 ~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~-~~pi~v~GG 181 (228)
T 1h1y_A 104 ELIQSIKAK-GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP-SLDIEVDGG 181 (228)
T ss_dssp HHHHHHHHT-TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TSEEEEESS
T ss_pred HHHHHHHHc-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcC-CCCEEEECC
Confidence 346666654 544544331 23 3444555555 999998732 222 111223456677888877653 689999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
|.. +.+.+++..|||.+.+||.++..++.++
T Consensus 182 I~~-~ni~~~~~aGaD~vvvGsai~~~~d~~~ 212 (228)
T 1h1y_A 182 LGP-STIDVAASAGANCIVAGSSIFGAAEPGE 212 (228)
T ss_dssp CST-TTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred cCH-HHHHHHHHcCCCEEEECHHHHCCCCHHH
Confidence 997 7888899999999999999998876654
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.30 E-value=6e-06 Score=73.39 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 265 ATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 265 ~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
..++.+.++++... -++||.++|||.. +.+.++.++|||++.+||.++..++.++
T Consensus 155 ~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~a~d~~~ 212 (230)
T 1tqj_A 155 EVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFNAPNYAE 212 (230)
T ss_dssp GGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCCCCHHH
Confidence 34677777776552 2699999999998 8899999999999999999998876654
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-06 Score=75.70 Aligned_cols=176 Identities=16% Similarity=0.109 Sum_probs=105.5
Q ss_pred CcHHHHHHHHHHHHcCCcee-ecC-----CCCCCHHHHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 020636 86 HPEGEYATARAASAAGTIMT-LSS-----WSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (323)
Q Consensus 86 ~~~~e~~~a~aa~~~G~~~~-vs~-----~s~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd 158 (323)
+.+..+.++++. +.|+..+ ++. +....++++++..+ .+.++-++....++ ..++.+.++|++.+.++.-
T Consensus 17 ~~~~~~~~~~~~-~~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~---~~~~~~~~aGad~i~vh~~ 92 (218)
T 3jr2_A 17 NLTDAVAVASNV-ASYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGA---ILSRMAFEAGADWITVSAA 92 (218)
T ss_dssp SHHHHHHHHHHH-GGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHH---HHHHHHHHHTCSEEEEETT
T ss_pred CHHHHHHHHHHh-cCCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHH---HHHHHHHhcCCCEEEEecC
Confidence 445566777775 4455544 442 12334677776644 34555555543333 2557788899998876531
Q ss_pred CCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC-HHHHHHHHHhcCCCEEE--eccCC
Q 020636 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-WKDVKWLQTITKLPILV--KGVLT 235 (323)
Q Consensus 159 ~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pv~v--K~i~~ 235 (323)
.+. .. .+.++.+++. +.+..+ =++.|
T Consensus 93 ~~~--------------------------------------------------~~~~~~~~~~~~~-g~~~~~d~l~~~T 121 (218)
T 3jr2_A 93 AHI--------------------------------------------------ATIAACKKVADEL-NGEIQIEIYGNWT 121 (218)
T ss_dssp SCH--------------------------------------------------HHHHHHHHHHHHH-TCEEEEECCSSCC
T ss_pred CCH--------------------------------------------------HHHHHHHHHHHHh-CCccceeeeecCC
Confidence 100 01 1234445543 554443 24468
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCC-CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~-~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.++++.+.+.|+|++++.. +.. ...+.....+.+..+++..+.++|++++||| +.+.+.+++++|||+|.+||++..
T Consensus 122 ~~~~~~~~~~g~d~v~~~~-~~~~~~~g~~~~~~~l~~i~~~~~~~~pi~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~~ 199 (218)
T 3jr2_A 122 MQDAKAWVDLGITQAIYHR-SRDAELAGIGWTTDDLDKMRQLSALGIELSITGGI-VPEDIYLFEGIKTKTFIAGRALAG 199 (218)
T ss_dssp HHHHHHHHHTTCCEEEEEC-CHHHHHHTCCSCHHHHHHHHHHHHTTCEEEEESSC-CGGGGGGGTTSCEEEEEESGGGSH
T ss_pred HHHHHHHHHcCccceeeee-ccccccCCCcCCHHHHHHHHHHhCCCCCEEEECCC-CHHHHHHHHHcCCCEEEEchhhcC
Confidence 8899999999999987632 100 0011111233344444433237999999999 589999999999999999999887
Q ss_pred Ccch
Q 020636 315 CPLT 318 (323)
Q Consensus 315 ~~~~ 318 (323)
.++.
T Consensus 200 a~dp 203 (218)
T 3jr2_A 200 AEGQ 203 (218)
T ss_dssp HHHH
T ss_pred CCCH
Confidence 6543
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-06 Score=78.63 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC--CCeEEEecCCCCHHHHHHHHHc--CCCEEEEcccc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALAL--GASGIFVSIMP 312 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~~pvia~GGI~~~~di~kal~l--GAd~V~iG~~~ 312 (323)
+-++.+.+. ++.|.+......+...+ +.++++.++.+.++. ++|||++|||++.+|+.+++.+ ||++|++|++|
T Consensus 162 e~a~~~~~~-a~~il~t~i~~dG~~~G-~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 162 DTFRELRKY-TNEFLIHAADVEGLCGG-IDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp HHHHHHTTT-CSEEEEEC-------CC-CCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred HHHHHHHHh-cCEEEEEeeccccCcCC-CCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 778999999 99999954322112223 489999999988732 6999999999999999999998 99999999996
Q ss_pred --ccCc
Q 020636 313 --CQCP 316 (323)
Q Consensus 313 --~~~~ 316 (323)
+..+
T Consensus 240 ~l~~g~ 245 (260)
T 2agk_A 240 DIFGGN 245 (260)
T ss_dssp GGGTCS
T ss_pred HHcCCC
Confidence 6655
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-05 Score=70.89 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 264 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+..++-+.++++... +++|.++|||+ .+.+.++..+|||.+.+||++++.++..+
T Consensus 154 ~~~l~ki~~lr~~~~-~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a~dp~~ 208 (228)
T 3ovp_A 154 EDMMPKVHWLRTQFP-SLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRSEDPRS 208 (228)
T ss_dssp GGGHHHHHHHHHHCT-TCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTCSCHHH
T ss_pred HHHHHHHHHHHHhcC-CCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHH
Confidence 345666777776543 68999999995 79999999999999999999998776654
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=8.5e-06 Score=74.28 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=59.7
Q ss_pred CHHHHHHHHHhcCCCEEEecc------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh-----
Q 020636 213 SWKDVKWLQTITKLPILVKGV------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT----- 277 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~----- 277 (323)
..++|+.+++..+ ...+|.| .+.|. ++.+.++|+|.|..|..-+ .....+....++.++.+..
T Consensus 143 v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfVKTSTGf~-~~gAT~edv~lm~~~v~~~~~~~~ 220 (281)
T 2a4a_A 143 ATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKV-QINATPSSVEYIIKAIKEYIKNNP 220 (281)
T ss_dssp HHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCS-SCCCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCC-CCCCCHHHHHHHHHHHHHhhcccc
Confidence 3456777777764 3567865 23442 4677899999999874211 0011233444444443322
Q ss_pred --cCCCeEEEecCCCCHHHHHHHHHcCCC
Q 020636 278 --QGRIPVFLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 278 --~~~~pvia~GGI~~~~di~kal~lGAd 304 (323)
+.+++|-++|||||.+|+++++.+||+
T Consensus 221 ~tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 221 EKNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp GGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred cCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 568999999999999999999999876
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=70.25 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=70.4
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.+.+.++. ++..+.|++. |+.|++++..+.+.|+|+|.++. .. .....+.|++++..++ ++|+++.|||.
T Consensus 97 ~d~~v~~~-~~~~g~~~i~-G~~t~~e~~~A~~~Gad~v~~Fp--a~----~~gG~~~lk~i~~~~~-~ipvvaiGGI~- 166 (214)
T 1wbh_A 97 LTEPLLKA-ATEGTIPLIP-GISTVSELMLGMDYGLKEFKFFP--AE----ANGGVKALQAIAGPFS-QVRFCPTGGIS- 166 (214)
T ss_dssp CCHHHHHH-HHHSSSCEEE-EESSHHHHHHHHHTTCCEEEETT--TT----TTTHHHHHHHHHTTCT-TCEEEEBSSCC-
T ss_pred CCHHHHHH-HHHhCCCEEE-ecCCHHHHHHHHHCCCCEEEEec--Cc----cccCHHHHHHHhhhCC-CCeEEEECCCC-
Confidence 34444444 4447778776 58999999999999999999932 11 1113567777776554 79999999994
Q ss_pred HHHHHHHHHc-CCCEEEEccccccCc
Q 020636 292 GTDVFKALAL-GASGIFVSIMPCQCP 316 (323)
Q Consensus 292 ~~di~kal~l-GAd~V~iG~~~~~~~ 316 (323)
.+.+.+.+++ |+++|. |+.++..+
T Consensus 167 ~~n~~~~l~agg~~~v~-gS~i~~~~ 191 (214)
T 1wbh_A 167 PANYRDYLALKSVLCIG-GSWLVPAD 191 (214)
T ss_dssp TTTHHHHHTSTTBSCEE-EGGGSCHH
T ss_pred HHHHHHHHhcCCCeEEE-eccccChh
Confidence 6889999998 899999 99887654
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=9.9e-06 Score=71.82 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=69.0
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
.+.+.++ .++..+.|++. |+.|++++..+.+.|+|+|.++- . ... ..+.|++++..++ ++|+++.|||
T Consensus 107 ~d~~v~~-~~~~~g~~~i~-G~~t~~e~~~A~~~Gad~vk~FP--a-----~~~~G~~~lk~i~~~~~-~ipvvaiGGI- 175 (225)
T 1mxs_A 107 ITEDILE-AGVDSEIPLLP-GISTPSEIMMGYALGYRRFKLFP--A-----EISGGVAAIKAFGGPFG-DIRFCPTGGV- 175 (225)
T ss_dssp CCHHHHH-HHHHCSSCEEC-EECSHHHHHHHHTTTCCEEEETT--H-----HHHTHHHHHHHHHTTTT-TCEEEEBSSC-
T ss_pred CCHHHHH-HHHHhCCCEEE-eeCCHHHHHHHHHCCCCEEEEcc--C-----ccccCHHHHHHHHhhCC-CCeEEEECCC-
Confidence 3444444 44456777776 58999999999999999999832 1 111 3566777766554 7999999999
Q ss_pred CHHHHHHHHH-cCCCEEEEccccccC
Q 020636 291 RGTDVFKALA-LGASGIFVSIMPCQC 315 (323)
Q Consensus 291 ~~~di~kal~-lGAd~V~iG~~~~~~ 315 (323)
+.+.+.+.++ .||++|. |+.++..
T Consensus 176 ~~~N~~~~l~~~Ga~~v~-gSai~~~ 200 (225)
T 1mxs_A 176 NPANVRNYMALPNVMCVG-TTWMLDS 200 (225)
T ss_dssp CTTTHHHHHHSTTBCCEE-ECTTSCH
T ss_pred CHHHHHHHHhccCCEEEE-EchhcCc
Confidence 5678889999 6999999 9988774
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-06 Score=76.10 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 268 ~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.+.++++.. ++||++.+||++++++.++.. +||+|.+|+++..
T Consensus 189 ~~v~~vr~~~--~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk 232 (252)
T 3tha_A 189 DKVKEIRSFT--NLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVK 232 (252)
T ss_dssp HHHHHHHTTC--CSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHH
T ss_pred HHHHHHHHhc--CCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHH
Confidence 3555555554 799999999999999987765 6999999998864
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.7e-06 Score=74.30 Aligned_cols=71 Identities=18% Similarity=0.108 Sum_probs=59.4
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
++.+.+.|.+.|.+...+ .+...+.+.++++.+..++||++.|||+|.+|+.+++.+|||.|.+|+++..+
T Consensus 192 a~~gad~G~~lV~LD~~~------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d 262 (286)
T 3vk5_A 192 LHVARAFGFHMVYLYSRN------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQP 262 (286)
T ss_dssp HHHHHHTTCSEEEEECSS------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSST
T ss_pred HHHHHHcCCCEEEEcCCC------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 455567888888887422 34567889999887743699999999999999999999999999999999988
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=69.23 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEcC-C-CCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecC
Q 020636 216 DVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 288 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GG 288 (323)
.++.+++. +.++ .+.+ .+..+.......++|.|.+.. + |+......+..++.+.++++.+. .++|++++||
T Consensus 101 ~~~~~~~~-g~~i-~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG 178 (220)
T 2fli_A 101 ALQKIKAA-GMKA-GVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGG 178 (220)
T ss_dssp HHHHHHHT-TSEE-EEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred HHHHHHHc-CCcE-EEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECc
Confidence 44555553 4433 3333 344444444456799886522 2 21111122334555555555442 2689999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
|+ .+++.+++++|||+|.+||++...++.++
T Consensus 179 I~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~ 209 (220)
T 2fli_A 179 VD-NKTIRACYEAGANVFVAGSYLFKASDLVS 209 (220)
T ss_dssp CC-TTTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred CC-HHHHHHHHHcCCCEEEEChHHhCCCCHHH
Confidence 99 79999999999999999999988766543
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-06 Score=75.78 Aligned_cols=79 Identities=27% Similarity=0.294 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.++.+.+.|+|.|.++..... ..+....++.+.++++.+ ++||++.|||++.+++.+++++|||+|.+|+.++..
T Consensus 34 ~~~a~~~~~~Gad~i~v~d~~~~-~~~~~~~~~~i~~i~~~~--~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~ 110 (252)
T 1ka9_F 34 VEAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRR 110 (252)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc-ccCccccHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhC
Confidence 45678889999999988642211 012234567778887766 799999999999999999999999999999999887
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 111 p~ 112 (252)
T 1ka9_F 111 PE 112 (252)
T ss_dssp TH
T ss_pred cH
Confidence 75
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-05 Score=70.21 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=98.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|...+.+.+++++++|++.+-+.|-- .+| +| +-+
T Consensus 36 saD~~~L~~~i~~l~~~G~d~lHvDVmD-----------g~F-Vp--------------------------------nit 71 (246)
T 3inp_A 36 SADLARLGDDVKAVLAAGADNIHFDVMD-----------NHY-VP--------------------------------NLT 71 (246)
T ss_dssp GSCGGGHHHHHHHHHHTTCCCEEEEEEB-----------SSS-SS--------------------------------CBC
T ss_pred cCChhhHHHHHHHHHHcCCCEEEEEecC-----------CCc-Cc--------------------------------chh
Confidence 4577777888999999999866543310 111 11 112
Q ss_pred cCHHHHHHHHHhc-CCCEEEec-cCCH-HHHHHHHHcCCCEEEEcCC---------------CC---------CCC----
Q 020636 212 LSWKDVKWLQTIT-KLPILVKG-VLTA-EDARIAVQAGAAGIIVSNH---------------GA---------RQL---- 260 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~-i~~~-e~a~~~~~~Gad~i~vs~~---------------gg---------~~~---- 260 (323)
+-.+.++.+|+.+ +.|+-+.. +.++ .-++.+.++|||.|.+..- |. +..
T Consensus 72 ~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~ 151 (246)
T 3inp_A 72 FGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLK 151 (246)
T ss_dssp CCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGT
T ss_pred cCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Confidence 3456889999988 88998885 3444 3477788999999998421 10 000
Q ss_pred ------C-----------C----CcchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 261 ------D-----------Y----VPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 261 ------~-----------~----~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
| + .+.+++-+.++++... .+++|.++|||+ .+.+.++.++|||.+.+||++++.+
T Consensus 152 ~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~ 230 (246)
T 3inp_A 152 YVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSD 230 (246)
T ss_dssp TTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTSS
T ss_pred HHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCCC
Confidence 0 1 1345666666665542 258999999999 5789999999999999999999877
Q ss_pred chhh
Q 020636 317 LTEK 320 (323)
Q Consensus 317 ~~~~ 320 (323)
+.++
T Consensus 231 dp~~ 234 (246)
T 3inp_A 231 SYKQ 234 (246)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.8e-06 Score=75.17 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.++.+.++|+|.|.++...+.. .+....++.+.++++.+ ++||++.|||++.+++.++++.|||+|.+|+.++.+
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~ 109 (253)
T 1thf_D 33 VELGKFYSEIGIDELVFLDITASV-EKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVEN 109 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSCSS-SHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEECCchhh-cCCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHhC
Confidence 455788899999999887532211 11234566777777665 799999999999999999999999999999999887
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|.
T Consensus 110 p~ 111 (253)
T 1thf_D 110 PS 111 (253)
T ss_dssp TH
T ss_pred hH
Confidence 75
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=8.7e-06 Score=72.19 Aligned_cols=80 Identities=26% Similarity=0.300 Sum_probs=64.0
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+.++.+.+.|+|+|.++...+.. ......++.+.++++.+ ++||++.|||++.+++.+++++|||+|.+|+.++.
T Consensus 35 ~~~~a~~~~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~ 111 (253)
T 1h5y_A 35 PVEMAVRYEEEGADEIAILDITAAP-EGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 111 (253)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 4577889999999999987532211 12234567788888777 79999999999999999999999999999999887
Q ss_pred Ccc
Q 020636 315 CPL 317 (323)
Q Consensus 315 ~~~ 317 (323)
.|.
T Consensus 112 ~~~ 114 (253)
T 1h5y_A 112 NPQ 114 (253)
T ss_dssp CTH
T ss_pred CcH
Confidence 665
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=98.06 E-value=3.8e-05 Score=70.70 Aligned_cols=86 Identities=22% Similarity=0.291 Sum_probs=60.9
Q ss_pred hcCCCEEEec------cCCHH----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 223 ITKLPILVKG------VLTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 223 ~~~~pv~vK~------i~~~e----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.+++|+++=. ..+.+ .++.+.++|+|.|.++-. + +.+.++.+.+ ++||++.||+...
T Consensus 169 ~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t-~----------e~~~~vv~~~--~vPVv~~GG~~~~ 235 (295)
T 3glc_A 169 KVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYV-E----------KGFERIVAGC--PVPIVIAGGKKLP 235 (295)
T ss_dssp TTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECC-T----------TTHHHHHHTC--SSCEEEECCSCCC
T ss_pred HcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCC-H----------HHHHHHHHhC--CCcEEEEECCCCC
Confidence 3578887721 12333 467888999999998621 1 2356666665 7999999999953
Q ss_pred -H----HHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 293 -T----DVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 293 -~----di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+ .+.+++.+||+++.+||.++..++-.++
T Consensus 236 ~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~ 269 (295)
T 3glc_A 236 EREALEMCWQAIDQGASGVDMGRNIFQSDHPVAM 269 (295)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHH
T ss_pred HHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHH
Confidence 3 3556668999999999999887765543
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-06 Score=76.33 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=63.0
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+-++.+.+.|+|.|.++...... ......++.+.+++ .+ ++||++.|||++.+++.+++++|||+|++|+.++.
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~-~~--~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 107 (241)
T 1qo2_A 32 PVELVEKLIEEGFTLIHVVDLSNAI-ENSGENLPVLEKLS-EF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp HHHHHHHHHHTTCCCEEEEEHHHHH-HCCCTTHHHHHHGG-GG--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecccccc-cCCchhHHHHHHHH-hc--CCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhh
Confidence 3566888899999999986421100 01234577788877 65 79999999999999999999999999999999998
Q ss_pred Ccc
Q 020636 315 CPL 317 (323)
Q Consensus 315 ~~~ 317 (323)
+|+
T Consensus 108 ~p~ 110 (241)
T 1qo2_A 108 DPS 110 (241)
T ss_dssp CTT
T ss_pred ChH
Confidence 887
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=72.27 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=60.4
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
..+-++.+.+.|+|.|.++.-... ..+....++.+.++++.+ ++||++.|||++..|+.+++.+|||+|.+|+.++
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~-~~~~g~~~~~i~~i~~~~--~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRD-GTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTS-SCSSCCCHHHHHHHGGGC--CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred HHHHHHHHHHCCCCEEEEEecCcc-cCCCcccHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 356688889999999998642211 011234678888887766 7999999999999999999999999999999998
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.2e-06 Score=71.37 Aligned_cols=91 Identities=15% Similarity=0.034 Sum_probs=65.9
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEEcCCC--CCCCC-CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCC
Q 020636 228 ILVKGVLTAEDARIAVQAGAAGIIVSNHG--ARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 228 v~vK~i~~~e~a~~~~~~Gad~i~vs~~g--g~~~~-~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd 304 (323)
++.-.+.+.+++..+. .|+|+|.++.-- .+..+ +.+..++.++++.+.+..++||++.|||. ++++.+++++||+
T Consensus 90 ~ig~s~~t~~e~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 90 HVSCSCHSVEEVKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EEEEEECSHHHHHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred EEEEecCCHHHHHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 3344568999999998 999999985421 11111 12335677888776521279999999998 8999999999999
Q ss_pred EEEEccccccCcchhh
Q 020636 305 GIFVSIMPCQCPLTEK 320 (323)
Q Consensus 305 ~V~iG~~~~~~~~~~~ 320 (323)
+|.+++.+...++-.+
T Consensus 168 gVav~s~i~~~~d~~~ 183 (210)
T 3ceu_A 168 GAVVLGDLWNKFDACL 183 (210)
T ss_dssp EEEESHHHHTTCCTTT
T ss_pred EEEEhHHhHcCCCHHH
Confidence 9999999987655443
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3e-05 Score=70.05 Aligned_cols=89 Identities=24% Similarity=0.239 Sum_probs=60.8
Q ss_pred cCHHHHHHHHHhcC-CCEEEecc------CCHH----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH----
Q 020636 212 LSWKDVKWLQTITK-LPILVKGV------LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---- 276 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK~i------~~~e----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~---- 276 (323)
...++|+.+++..+ .+..+|.| .+.| -++.+.++|+|.|..|..-+ .+..+++.+..+++.
T Consensus 118 ~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVKTSTGf~----~~gAt~e~v~lm~~~I~~~ 193 (260)
T 1p1x_A 118 VGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKV----AVNATPESARIMMEVIRDM 193 (260)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCS----SCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHHHHh
Confidence 44667888887763 24567765 2344 24677899999999874211 122355533333333
Q ss_pred -hcCCCeEEEecCCCCHHHHHHHHHcCCC
Q 020636 277 -TQGRIPVFLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 277 -~~~~~pvia~GGI~~~~di~kal~lGAd 304 (323)
++.+++|-++||||+.+|+++++.+||+
T Consensus 194 ~~g~~v~VKaaGGIrt~~~al~~i~aga~ 222 (260)
T 1p1x_A 194 GVEKTVGFKPAGGVRTAEDAQKYLAIADE 222 (260)
T ss_dssp TCTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred cCCCCceEEEeCCCCCHHHHHHHHHhhhh
Confidence 4458999999999999999999999876
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=62.77 Aligned_cols=174 Identities=17% Similarity=0.083 Sum_probs=98.9
Q ss_pred CcHHHHHHHHHHHHcCCcee-ecC-----CCCCCHHHHHhcCC-CceeEEeeecCC-hHHHHHHHHHHHHcCCcEEEEec
Q 020636 86 HPEGEYATARAASAAGTIMT-LSS-----WSTSSVEEVASTGP-GIRFFQLYVYKD-RNVVAQLVRRAERAGFKAIALTV 157 (323)
Q Consensus 86 ~~~~e~~~a~aa~~~G~~~~-vs~-----~s~~~~eei~~~~~-~~~~~QLy~~~d-~~~~~~~~~~a~~~G~~al~itv 157 (323)
+.+..+.+++++.. |+.++ ++. .....++++++..| .+...-+.. .| ++ ..++.+.++|++.+.++.
T Consensus 11 ~~~~~~~~~~~~~~-~v~~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~-~di~~---~~~~~a~~~Gad~v~vh~ 85 (207)
T 3ajx_A 11 STEAALELAGKVAE-YVDIIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKT-MDAGE---LEADIAFKAGADLVTVLG 85 (207)
T ss_dssp CHHHHHHHHHHHGG-GCSEEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEE-CSCHH---HHHHHHHHTTCSEEEEET
T ss_pred CHHHHHHHHHHhhc-cCCEEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEe-cCccH---HHHHHHHhCCCCEEEEec
Confidence 44555677777766 54332 322 12234666766653 344544443 35 33 245777889999887763
Q ss_pred CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCH-HHHHHHHHhcCCCEEEecc--C
Q 020636 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW-KDVKWLQTITKLPILVKGV--L 234 (323)
Q Consensus 158 d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~pv~vK~i--~ 234 (323)
.... ... +.++.+++ .+.++.+-.. .
T Consensus 86 ~~~~--------------------------------------------------~~~~~~~~~~~~-~g~~~gv~~~s~~ 114 (207)
T 3ajx_A 86 SADD--------------------------------------------------STIAGAVKAAQA-HNKGVVVDLIGIE 114 (207)
T ss_dssp TSCH--------------------------------------------------HHHHHHHHHHHH-HTCEEEEECTTCS
T ss_pred cCCh--------------------------------------------------HHHHHHHHHHHH-cCCceEEEEecCC
Confidence 2110 001 12333433 3444422211 1
Q ss_pred CHHH-HHHHHHcCCCEEEEc-CCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 235 TAED-ARIAVQAGAAGIIVS-NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 235 ~~e~-a~~~~~~Gad~i~vs-~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
++++ ++.+.+.|+|.|.+. ...+......+.. +.++++... ++|+++.|||+ .+.+.++++.|||+|.+||.+
T Consensus 115 ~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~-~~i~~~~~~---~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI 189 (207)
T 3ajx_A 115 DKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLN-GLLAAGEKA---RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGAI 189 (207)
T ss_dssp SHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTH-HHHHHHHHH---TSCEEEESSCC-GGGHHHHHHTTCSEEEESHHH
T ss_pred ChHHHHHHHHHhCCCEEEEEecccccccCCCchH-HHHHHhhCC---CCCEEEECCcC-HHHHHHHHHcCCCEEEEeeec
Confidence 5555 677778899999443 2111000001222 444444332 58999999998 788888999999999999999
Q ss_pred ccCcchhh
Q 020636 313 CQCPLTEK 320 (323)
Q Consensus 313 ~~~~~~~~ 320 (323)
...++..+
T Consensus 190 ~~~~dp~~ 197 (207)
T 3ajx_A 190 YGAADPAA 197 (207)
T ss_dssp HTSSSHHH
T ss_pred cCCCCHHH
Confidence 88776543
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0002 Score=61.60 Aligned_cols=148 Identities=15% Similarity=0.097 Sum_probs=96.9
Q ss_pred ceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHH
Q 020636 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (323)
Q Consensus 124 ~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (323)
..+|=|+ .+-..+.+.+++++++| +-++|++|.... ++ ......++
T Consensus 31 ~~ifll~--g~i~~l~~~v~~lk~~~-K~v~Vh~Dli~G----------ls---------------------~d~~ai~f 76 (192)
T 3kts_A 31 TYMVMLE--THVAQLKALVKYAQAGG-KKVLLHADLVNG----------LK---------------------NDDYAIDF 76 (192)
T ss_dssp CEEEECS--EETTTHHHHHHHHHHTT-CEEEEEGGGEET----------CC---------------------CSHHHHHH
T ss_pred CEEEEec--CcHHHHHHHHHHHHHcC-CeEEEecCchhc----------cC---------------------CcHHHHHH
Confidence 4455555 36667788999999998 466668875431 10 00111224
Q ss_pred HhhccCCcc----CHHHHHHHHHhcCCCEEEec--cC--CHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHH
Q 020636 204 VAGQIDRSL----SWKDVKWLQTITKLPILVKG--VL--TAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 274 (323)
Q Consensus 204 ~~~~~~~~~----~~~~i~~i~~~~~~pv~vK~--i~--~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~ 274 (323)
+....+|+. ....++..++ .++..+-+. +. +.+. .+.+.+...|++.+- .+ +. ...+.++.
T Consensus 77 L~~~~~pdGIIsTk~~~i~~Ak~-~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiL-------PG-i~-p~iI~~i~ 146 (192)
T 3kts_A 77 LCTEICPDGIISTRGNAIMKAKQ-HKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELL-------PG-II-PEQVQKMT 146 (192)
T ss_dssp HHHTTCCSEEEESCHHHHHHHHH-TTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEE-------CT-TC-HHHHHHHH
T ss_pred HHhCCCCCEEEeCcHHHHHHHHH-CCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEEC-------Cc-hh-HHHHHHHH
Confidence 433334442 2345666655 466555553 22 2233 455667889999763 11 22 36888888
Q ss_pred HHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 275 KATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 275 ~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+.+ ++|||+.|+|++.+|+.+|+.+||++|..|+..++..-
T Consensus 147 ~~~--~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~~ 187 (192)
T 3kts_A 147 QKL--HIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEGH 187 (192)
T ss_dssp HHH--CCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGTTC
T ss_pred Hhc--CCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCcc
Confidence 888 89999999999999999999999999999998777543
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=8.1e-05 Score=66.21 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=60.8
Q ss_pred HHHHHHHHHhc---CCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCC-CcchHHHHHH--HHHHhc
Q 020636 214 WKDVKWLQTIT---KLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDY-VPATIMALEE--VVKATQ 278 (323)
Q Consensus 214 ~~~i~~i~~~~---~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~-~~~~~~~l~~--i~~~~~ 278 (323)
.+++..+++.. +.| +|.+ ++.++ ++.+.++|+|.|..|...+ + +..+++.+.. +++.++
T Consensus 119 ~~ei~~v~~a~~~~g~~--lKvIlEt~~L~~e~i~~a~ria~eaGADfVKTsTG~~----~~~gAt~~dv~l~~m~~~v~ 192 (234)
T 1n7k_A 119 YREVSGIVKLAKSYGAV--VKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVY----TKGGDPVTVFRLASLAKPLG 192 (234)
T ss_dssp HHHHHHHHHHHHHTTCE--EEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSS----CCCCSHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHhhcCCe--EEEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCCHHHHHHHHHHHHHC
Confidence 45566666653 444 4644 45554 5677899999999874211 1 2345555544 666664
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 279 GRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 279 ~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+||.++|||++.+|+++++.+||+.++..
T Consensus 193 --v~VKaaGGirt~~~al~~i~aGa~RiG~S 221 (234)
T 1n7k_A 193 --MGVKASGGIRSGIDAVLAVGAGADIIGTS 221 (234)
T ss_dssp --CEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred --CCEEEecCCCCHHHHHHHHHcCccccchH
Confidence 99999999999999999999999955544
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-05 Score=72.62 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcC--CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecC
Q 020636 214 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 288 (323)
Q Consensus 214 ~~~i~~i~~~~~--~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GG 288 (323)
.+.++.+++..+ .++.+ .+.+.++++.+.++|+|+|.+++. +.+.+.++++.+. .+++|.++||
T Consensus 169 ~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~----------~~~~l~~~v~~l~~~~~~~~i~AsGG 237 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEI-ECESFEEAKNAMNAGADIVMCDNL----------SVLETKEIAAYRDAHYPFVLLEASGN 237 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEE-EESSHHHHHHHHHHTCSEEEEETC----------CHHHHHHHHHHHHHHCTTCEEEEESS
T ss_pred HHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCcEEEEECC
Confidence 456888888775 34554 678899999999999999999762 1344555444442 2499999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
| +.+.+.+.++.|||.+.+|+.....|
T Consensus 238 I-~~~ni~~~~~aGaD~i~vGs~i~~a~ 264 (273)
T 2b7n_A 238 I-SLESINAYAKSGVDAISVGALIHQAT 264 (273)
T ss_dssp C-CTTTHHHHHTTTCSEEECTHHHHTCC
T ss_pred C-CHHHHHHHHHcCCcEEEEcHHhcCCC
Confidence 9 89999999999999999999866544
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.3e-05 Score=71.16 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCC-CEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~~-pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+++..+. ++++ .+.+.++++.+.++|+|+|.++| .+.+.+.++++.+.++++|.++||| +.+
T Consensus 197 ~ai~~~r~~~~~~kI~v-ev~tlee~~eA~~aGaD~I~ld~----------~~~e~l~~~v~~~~~~~~I~ASGGI-t~~ 264 (296)
T 1qap_A 197 QAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDN----------FNTDQMREAVKRVNGQARLEVSGNV-TAE 264 (296)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESS----------CCHHHHHHHHHTTCTTCCEEECCCS-CHH
T ss_pred HHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCeEEEECCC-CHH
Confidence 457778887653 4444 56788999999999999999976 3456677777777667999999999 999
Q ss_pred HHHHHHHcCCCEEEEccccccCc
Q 020636 294 DVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.+.+..+.|+|.+.+|+.....|
T Consensus 265 ~i~~~a~~GvD~isvGsli~~a~ 287 (296)
T 1qap_A 265 TLREFAETGVDFISVGALTKHVR 287 (296)
T ss_dssp HHHHHHHTTCSEEECSHHHHEEE
T ss_pred HHHHHHHcCCCEEEEeHHHcCCC
Confidence 99999999999999999654433
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=7.9e-05 Score=66.23 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCCEEEec-cCCHHH-HHHHHHcCCCEEEEcCCC-C------------------------CC-------
Q 020636 214 WKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNHG-A------------------------RQ------- 259 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~-i~~~e~-a~~~~~~Gad~i~vs~~g-g------------------------~~------- 259 (323)
...++.+|+.++.|+.+-. +.+++. ++.+.++|||+|.++.-. . +.
T Consensus 46 ~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~ 125 (231)
T 3ctl_A 46 PFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYY 125 (231)
T ss_dssp HHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTT
T ss_pred HHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHH
Confidence 4567777777666766663 334433 667777788877763211 0 00
Q ss_pred ---CC-----------C----CcchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCCCEEEEc-cccccCcc
Q 020636 260 ---LD-----------Y----VPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFVS-IMPCQCPL 317 (323)
Q Consensus 260 ---~~-----------~----~~~~~~~l~~i~~~~~---~~~pvia~GGI~~~~di~kal~lGAd~V~iG-~~~~~~~~ 317 (323)
.| + .+..++-+.++++... -+++|.++|||. .+.+.++.++|||.+.+| |.+++.++
T Consensus 126 l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~~~d 204 (231)
T 3ctl_A 126 IHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFNHAE 204 (231)
T ss_dssp GGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGGGCS
T ss_pred HhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhCCCC
Confidence 00 1 2345666666666542 268999999998 577888899999999999 99988765
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-05 Score=71.25 Aligned_cols=79 Identities=25% Similarity=0.249 Sum_probs=63.4
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+.++.+.++|+|.|.+..-.+. ..+.... +.+.++++.+ ++|+++.|||++++++.+++++|||.|.+|+.++.
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~~d~~-~~~~~~~-~~i~~i~~~~--~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~ 108 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVDLDAA-FGRGSNH-ELLAEVVGKL--DVQVELSGGIRDDESLAAALATGCARVNVGTAALE 108 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHH-TTSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCccc-ccCCChH-HHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhh
Confidence 356688889999999998642111 1122344 8888888877 89999999999999999999999999999999888
Q ss_pred Ccc
Q 020636 315 CPL 317 (323)
Q Consensus 315 ~~~ 317 (323)
+|+
T Consensus 109 ~p~ 111 (244)
T 2y88_A 109 NPQ 111 (244)
T ss_dssp CHH
T ss_pred ChH
Confidence 774
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-05 Score=71.06 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.++.+.++|+|.|.+....+. ..+.... +.+.++++.+ ++|+++.|||++++++.+++.+|||.|.+|+.++.+
T Consensus 35 ~~~a~~~~~~Gad~i~v~~~d~~-~~~~~~~-~~i~~i~~~~--~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~~ 110 (244)
T 1vzw_A 35 LEAALAWQRSGAEWLHLVDLDAA-FGTGDNR-ALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET 110 (244)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHH-HTSCCCH-HHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEecCchh-hcCCChH-HHHHHHHHhc--CCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhhC
Confidence 46678889999999988642111 0122445 7888888877 899999999999999999999999999999988877
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|+
T Consensus 111 p~ 112 (244)
T 1vzw_A 111 PE 112 (244)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.6e-05 Score=67.69 Aligned_cols=90 Identities=24% Similarity=0.310 Sum_probs=69.7
Q ss_pred HHHHHHHHhcC--CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 215 ~~i~~i~~~~~--~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
+.++..|+..+ .++.+ .+.+.++++.+.++|+|+|.+.|- ..+.++++.+.+++++|+.++||| +.
T Consensus 184 ~av~~ar~~~~~~~~IgV-ev~t~eea~eA~~aGaD~I~ld~~----------~~~~~k~av~~v~~~ipi~AsGGI-t~ 251 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVEV-EVRSLEELEEALEAGADLILLDNF----------PLEALREAVRRVGGRVPLEASGNM-TL 251 (286)
T ss_dssp HHHHHHHHHSCTTSCEEE-EESSHHHHHHHHHHTCSEEEEESC----------CHHHHHHHHHHHTTSSCEEEESSC-CH
T ss_pred HHHHHHHHhCCCCCEEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEEcCC-CH
Confidence 34777887764 34444 678899999999999999998762 234455666666557999999999 48
Q ss_pred HHHHHHHHcCCCEEEEccccccCc
Q 020636 293 TDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+..+.|+|++.+|+.....|
T Consensus 252 eni~~~a~tGvD~IsVgs~~~~a~ 275 (286)
T 1x1o_A 252 ERAKAAAEAGVDYVSVGALTHSAK 275 (286)
T ss_dssp HHHHHHHHHTCSEEECTHHHHSCC
T ss_pred HHHHHHHHcCCCEEEEcHHHcCCC
Confidence 999999999999999998665533
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4.4e-05 Score=71.60 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=88.0
Q ss_pred CCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccc
Q 020636 101 GTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 180 (323)
Q Consensus 101 G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~ 180 (323)
..|++++.++..+.+++++...+..|+|+|...+++.+.++++++++.|+ .+++|. |.+
T Consensus 46 ~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~~~~~i~~~~~~g~---~v~v~~---g~~--------------- 104 (336)
T 1ypf_A 46 KLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEKRISFIRDMQSRGL---IASISV---GVK--------------- 104 (336)
T ss_dssp SSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGGHHHHHHHHHHTTC---CCEEEE---CCS---------------
T ss_pred cCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHHHHHHHHHHHhcCC---eEEEeC---CCC---------------
Confidence 46788999988888888654334569999998888888888888877664 112221 100
Q ss_pred cccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC--CCEEEEcCCCCC
Q 020636 181 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG--AAGIIVSNHGAR 258 (323)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G--ad~i~vs~~gg~ 258 (323)
.+.+ +.++.+.+.| ++.|.+....|
T Consensus 105 ---------------------------------~~~~-------------------~~a~~~~~~g~~~~~i~i~~~~G- 131 (336)
T 1ypf_A 105 ---------------------------------EDEY-------------------EFVQQLAAEHLTPEYITIDIAHG- 131 (336)
T ss_dssp ---------------------------------HHHH-------------------HHHHHHHHTTCCCSEEEEECSSC-
T ss_pred ---------------------------------HHHH-------------------HHHHHHHhcCCCCCEEEEECCCC-
Confidence 0111 2255666777 88877632111
Q ss_pred CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 259 QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 259 ~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.....++.+.++++.+ +.+++..|+|.+.+++.++..+|||+|.++
T Consensus 132 ---~~~~~~~~i~~lr~~~--~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 132 ---HSNAVINMIQHIKKHL--PESFVIAGNVGTPEAVRELENAGADATKVG 177 (336)
T ss_dssp ---CSHHHHHHHHHHHHHC--TTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred ---CcHHHHHHHHHHHHhC--CCCEEEECCcCCHHHHHHHHHcCCCEEEEe
Confidence 1234567888888877 334455577999999999999999999994
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=97.85 E-value=2.6e-05 Score=72.02 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=68.5
Q ss_pred HHHHHHHHhcC--CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEEecCC
Q 020636 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 289 (323)
Q Consensus 215 ~~i~~i~~~~~--~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia~GGI 289 (323)
+.++.+++..+ .++++ .+.+.++++.+.++|+|+|.+++.+ .+.+.++++.+. .+++|.++|||
T Consensus 185 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~~----------~~~l~~~v~~l~~~~~~~~I~ASGGI 253 (299)
T 2jbm_A 185 KAVRAARQAADFALKVEV-ECSSLQEAVQAAEAGADLVLLDNFK----------PEELHPTATVLKAQFPSVAVEASGGI 253 (299)
T ss_dssp HHHHHHHHHHTTTSCEEE-EESSHHHHHHHHHTTCSEEEEESCC----------HHHHHHHHHHHHHHCTTSEEEEESSC
T ss_pred HHHHHHHHhCCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhhccCCCeeEEEECCC
Confidence 45777777764 34544 6788999999999999999997621 344555444442 24899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+.+.++.|||.+.+|+.....|
T Consensus 254 -t~~ni~~~~~aGaD~i~vGs~i~~a~ 279 (299)
T 2jbm_A 254 -TLDNLPQFCGPHIDVISMGMLTQAAP 279 (299)
T ss_dssp -CTTTHHHHCCTTCCEEECTHHHHSCC
T ss_pred -CHHHHHHHHHCCCCEEEEChhhcCCC
Confidence 99999999999999999999765543
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.7e-05 Score=71.73 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=56.0
Q ss_pred HHHHHHHHhcC--CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCC------CeEEEe
Q 020636 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR------IPVFLD 286 (323)
Q Consensus 215 ~~i~~i~~~~~--~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~------~pvia~ 286 (323)
+.++.+++..+ .++++ .+.+.++++.+.++|+|+|.+++.+ .+.+.++++.+.+. ++|.++
T Consensus 187 ~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~~----------~~~l~~~v~~l~~~~~g~~~v~I~AS 255 (294)
T 3c2e_A 187 NAVKNARAVCGFAVKIEV-ECLSEDEATEAIEAGADVIMLDNFK----------GDGLKMCAQSLKNKWNGKKHFLLECS 255 (294)
T ss_dssp HHHHHHHHHHCTTSCEEE-ECSSSHHHHHHHHHTCSEEECCC-------------------------------CCEEEEE
T ss_pred HHHHHHHHhcCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcccccCCCCeEEEEE
Confidence 45777777764 34554 6777899999999999999887622 34444544444333 899999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
||| +.+.+.+..+.|+|.+.+|+.....|
T Consensus 256 GGI-t~~ni~~~~~~GvD~i~vGs~i~~a~ 284 (294)
T 3c2e_A 256 GGL-NLDNLEEYLCDDIDIYSTSSIHQGTP 284 (294)
T ss_dssp CCC-CC------CCCSCSEEECGGGTSSCC
T ss_pred CCC-CHHHHHHHHHcCCCEEEEechhcCCC
Confidence 999 99999999999999999999865544
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00012 Score=64.34 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCC--CCC---CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHG--ARQ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~g--g~~---~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
+.+.++.+++.+.|.+.|.+.+.- |+. ....+..++...+..+.+..++||++.|||++++++..+...|||+|.
T Consensus 118 v~~~~e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvl 197 (219)
T 2h6r_A 118 TNNINTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVL 197 (219)
T ss_dssp ESSSHHHHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEE
T ss_pred eCCchHHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEE
Confidence 344455677778888877765432 111 111111122222333333337999999999999999999999999999
Q ss_pred EccccccCcchhhhc
Q 020636 308 VSIMPCQCPLTEKIN 322 (323)
Q Consensus 308 iG~~~~~~~~~~~~~ 322 (323)
+|++++..+++.++.
T Consensus 198 VGsAi~~~~d~~~~~ 212 (219)
T 2h6r_A 198 LASGVVKAKNVEEAI 212 (219)
T ss_dssp ESHHHHTCSSHHHHH
T ss_pred EcHHHhCcccHHHHH
Confidence 999999988877653
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=8.2e-05 Score=67.79 Aligned_cols=166 Identities=14% Similarity=0.056 Sum_probs=90.4
Q ss_pred eeecCChHHHHHHHHHHH-HcCCcEEEEecCCCCCCchHHHHhhccCCC--CccccccccccccCCCccc----------
Q 020636 129 LYVYKDRNVVAQLVRRAE-RAGFKAIALTVDTPRLGRREADIKNRFTLP--PFLTLKNFQGLDLGKMDEA---------- 195 (323)
Q Consensus 129 Ly~~~d~~~~~~~~~~a~-~~G~~al~itvd~p~~g~r~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------- 195 (323)
|-+...++.+.++.++|. +.++.+++|+ |..-...++.-.+-. + ..+.+..+.+||.|.....
T Consensus 35 L~p~~T~e~I~~lc~eA~~~~~~aaVCV~---P~~V~~a~~~L~~~~-~~~s~v~V~tVigFP~G~~~~e~K~~Ea~~Av 110 (297)
T 4eiv_A 35 LTDGETNESVAAVCKIAAKDPAIVGVSVR---PAFVRFIRQELVKSA-PEVAGIKVCAAVNFPEGTGTPDTVSLEAVGAL 110 (297)
T ss_dssp CSTTCCHHHHHHHHHHHHSSSCCSEEEEC---GGGHHHHHHTGGGTC-GGGGGSEEEEEESTTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhcCcEEEEEC---HHHHHHHHHHhcccC-cCCCCCeEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 333455777888888888 7888888875 332222222111100 0 1344555567776653210
Q ss_pred -cchhhHH------HHhh--ccCCccCHHHHHHHHHhcCCCEEEecc-----C-CHHH----HHHHHHcCCCEEEEcCCC
Q 020636 196 -NDSGLAA------YVAG--QIDRSLSWKDVKWLQTITKLPILVKGV-----L-TAED----ARIAVQAGAAGIIVSNHG 256 (323)
Q Consensus 196 -~~~~~~~------~~~~--~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~-~~e~----a~~~~~~Gad~i~vs~~g 256 (323)
.|+.-.+ ++.. .++.+...++|+.+++..+ +..+|.| + +.+. .+.+.++|||.|..|..-
T Consensus 111 ~~GAdEIDmVinig~lk~~~~g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKTSTGf 189 (297)
T 4eiv_A 111 KDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGL 189 (297)
T ss_dssp HTTCSEEEEECCTHHHHHCHHHHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEECCCSS
T ss_pred HcCCCEEEeeeeHHHHhcccCCcHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 0000000 0000 0122233456778888774 5678865 3 3442 356679999999987632
Q ss_pred CCCCCCCcchHHHHHHHHHHh-------------------cCCCeEEEe-cCCCCHHHHHHHHH
Q 020636 257 ARQLDYVPATIMALEEVVKAT-------------------QGRIPVFLD-GGVRRGTDVFKALA 300 (323)
Q Consensus 257 g~~~~~~~~~~~~l~~i~~~~-------------------~~~~pvia~-GGI~~~~di~kal~ 300 (323)
+. ....+..+.++.+..+.. ++++.|-++ |||||.+|+.+++.
T Consensus 190 ~~-~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~ 252 (297)
T 4eiv_A 190 GA-THATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQ 252 (297)
T ss_dssp SS-CCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHHHHHHHHH
Confidence 21 111233344444433211 357999999 99999999999999
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.3e-05 Score=67.82 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|+|.+.+-.-.+ ...+.....+.+.++.+.+ .+|+-+.||||+-+|+.+.|.+||+-|.+|+..+.+
T Consensus 34 ~~~a~~~~~~gad~lhvvDld~-a~~~~~~~~~~i~~i~~~~--~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~ 110 (243)
T 4gj1_A 34 LKKFKEYEKAGAKELHLVDLTG-AKDPSKRQFALIEKLAKEV--SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKD 110 (243)
T ss_dssp HHHHHHHHHHTCCEEEEEEHHH-HHCGGGCCHHHHHHHHHHC--CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTC
T ss_pred HHHHHHHHHCCCCEEEEEecCc-ccccchhHHHHHHHHHHhc--CCCeEeccccccHHHHHHHHHcCCCEEEEccccccC
Confidence 4668888899999998732111 0123456788999998887 899999999999999999999999999999999998
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|.+
T Consensus 111 p~l 113 (243)
T 4gj1_A 111 ATL 113 (243)
T ss_dssp HHH
T ss_pred Cch
Confidence 875
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=70.17 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=68.5
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEE
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia 285 (323)
+++...+.++++++. +.|++++.. ...+.++.+.++|+|.+.+.+....+....+ ..+..+.++++.+ ++||++
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~--~~pvi~ 216 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSL--DVPVIA 216 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHC--SSCEEE
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhc--CCCEEE
Confidence 344445567777775 788888754 2355677888999999988643211111112 1455577777777 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
||+.+++|+.+++.+|||+|.+|+
T Consensus 217 -ggi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 217 -GGVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp -ECCCSHHHHHHHHTTTCSEEEESC
T ss_pred -CCcCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999987
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00052 Score=59.65 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=53.4
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC-HHHHHHHHHcCCCEEEEccccccCcc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~-~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
++.+.+.|+++++++.+ ..+.+.++++.++ ..+++++|||+. +.++.+++++|||.+.+||.++..++
T Consensus 125 ~~~a~~~G~~G~~~~~~----------~~~~i~~lr~~~~-~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a~d 193 (208)
T 2czd_A 125 IEVANEIEPFGVIAPGT----------RPERIGYIRDRLK-EGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPN 193 (208)
T ss_dssp HHHHHHHCCSEEECCCS----------STHHHHHHHHHSC-TTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSS
T ss_pred HHHHHHhCCcEEEECCC----------ChHHHHHHHHhCC-CCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcCCC
Confidence 56777899999987642 2344556666653 335779999996 55899999999999999999988765
Q ss_pred hhh
Q 020636 318 TEK 320 (323)
Q Consensus 318 ~~~ 320 (323)
..+
T Consensus 194 p~~ 196 (208)
T 2czd_A 194 PRE 196 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=65.54 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=69.2
Q ss_pred HHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+|+.. ..|+.| .+.+.++++.+.++|+|.|.+.| .+.+.++++.+.+++++++.++||| +.+.
T Consensus 188 Av~~ar~~~~~~~IeV-Ev~tl~ea~eAl~aGaD~I~LDn----------~~~~~l~~av~~~~~~v~ieaSGGI-t~~~ 255 (287)
T 3tqv_A 188 AVTKAKKLDSNKVVEV-EVTNLDELNQAIAAKADIVMLDN----------FSGEDIDIAVSIARGKVALEVSGNI-DRNS 255 (287)
T ss_dssp HHHHHHHHCTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----------CCHHHHHHHHHHHTTTCEEEEESSC-CTTT
T ss_pred HHHHHHhhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEEcC----------CCHHHHHHHHHhhcCCceEEEECCC-CHHH
Confidence 466666654 356665 67899999999999999999977 2345677777777668999999999 6778
Q ss_pred HHHHHHcCCCEEEEccccccC
Q 020636 295 VFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~ 315 (323)
+.+..+.|+|.+.+|..-...
T Consensus 256 i~~~a~tGVD~IsvGalt~sa 276 (287)
T 3tqv_A 256 IVAIAKTGVDFISVGAITKHI 276 (287)
T ss_dssp HHHHHTTTCSEEECSHHHHSB
T ss_pred HHHHHHcCCCEEEEChhhcCC
Confidence 888888999999999765443
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00013 Score=64.61 Aligned_cols=71 Identities=13% Similarity=0.058 Sum_probs=56.6
Q ss_pred HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcch
Q 020636 240 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 240 ~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
..+.-.|.+.|.+.. .|. ....+.+.++++.+. ++||++-|||++++++.+++ .|||+|.+|+++..+|..
T Consensus 147 ~~a~~~g~~~VYld~-sG~-----~~~~~~i~~i~~~~~-~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~p~~ 217 (228)
T 3vzx_A 147 RVSELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVLE-TSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDFDR 217 (228)
T ss_dssp HHHHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHHCS-SSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCHHH
T ss_pred HHHHHcCCCEEEecC-CCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcCHHH
Confidence 344456788888866 332 226888999888762 59999999999999999988 699999999999888764
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00042 Score=68.49 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=54.0
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
..+.++.+.++|+|.|.+....|. ....++.+.++++.++ ++||++ |++.+.+++.++..+|||++.+|
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~G~----~~~~~~~i~~i~~~~~-~~pvi~-~~v~t~~~a~~l~~aGad~I~vg 324 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQGN----SVYQIAMVHYIKQKYP-HLQVIG-GNVVTAAQAKNLIDAGVDGLRVG 324 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCC----SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHcCCCEEEeeccCCc----chhHHHHHHHHHHhCC-CCceEe-cccchHHHHHHHHHcCCCEEEEC
Confidence 367788999999999998433221 1224578888888773 688887 78999999999999999999884
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=7.3e-05 Score=66.50 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=60.2
Q ss_pred CHHHHHHHHHcCC-----CEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDARIAVQAGA-----AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~~~~~~Ga-----d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+++.++...+.|. ..|.+.. .|. ....+.+.++++.+. ++||++-|||++++++.+++. |||+|.+|
T Consensus 147 ~~e~~~~~a~~g~~~l~~~~Vyl~~-~G~-----~~~~~~i~~i~~~~~-~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 147 DKELAASYALVGEKLFNLPIIYIEY-SGT-----YGNPELVAEVKKVLD-KARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEC-TTS-----CCCHHHHHHHHHHCS-SSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred CHHHHHHHHHhhhhhcCCCEEEEeC-CCC-----cchHHHHHHHHHhCC-CCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 5677777777776 6776654 232 457788999888753 689999999999999999999 99999999
Q ss_pred cccccCcc
Q 020636 310 IMPCQCPL 317 (323)
Q Consensus 310 ~~~~~~~~ 317 (323)
+++...|.
T Consensus 219 Sa~v~~~~ 226 (234)
T 2f6u_A 219 NVIYEKGI 226 (234)
T ss_dssp HHHHHHCH
T ss_pred hHHHhCHH
Confidence 99987664
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=8.9e-05 Score=66.21 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=59.7
Q ss_pred CHHHHHHHHHcCC----CEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 235 TAEDARIAVQAGA----AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 235 ~~e~a~~~~~~Ga----d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+++.++...+.|. ..|.+.. .|. ....+.+.++++.+. ++||++-|||++++++.+++. |||+|.+|+
T Consensus 140 ~~~~~~~~a~~g~~~~~~~VYl~s-~G~-----~~~~~~i~~i~~~~~-~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 140 NMDDIVAYARVSELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVLE-TSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHTCS-SSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred CHHHHHHHHHhCcccCCCEEEEeC-CCc-----cChHHHHHHHHHhcC-CCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 4677777777774 5666544 232 456788888887652 689999999999999999988 999999999
Q ss_pred ccccCcc
Q 020636 311 MPCQCPL 317 (323)
Q Consensus 311 ~~~~~~~ 317 (323)
++...|.
T Consensus 212 a~v~~~~ 218 (240)
T 1viz_A 212 AVYEDFD 218 (240)
T ss_dssp HHHHCHH
T ss_pred HHHhCHH
Confidence 9998886
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00018 Score=62.47 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-++.+...|+..+.+.+.+......+. ..+.+.++.... ++|+|+.||+.+++|+.+++..||++|++|++|...
T Consensus 133 ~~~i~~~~~~~~~~vli~~~~~~g~~~g~-~~~~i~~~~~~~--~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 133 RDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTCCSCC-CHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred HHHHHHHhhcCCCeEEEEecCCCCccccc-cHHHHHHHHHhc--CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 34567777888886766432111001112 367787777665 899999999999999999999999999999999766
Q ss_pred cc
Q 020636 316 PL 317 (323)
Q Consensus 316 ~~ 317 (323)
|+
T Consensus 210 ~~ 211 (237)
T 3cwo_X 210 EI 211 (237)
T ss_dssp SS
T ss_pred CC
Confidence 53
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00039 Score=63.67 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=68.5
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+|+..+ .|+.| .+.+.++++.++++|+|.|.+.|. +.+.++++.+.+++++.+.++||| +.+
T Consensus 196 ~Av~~ar~~~p~~kIeV-Ev~tl~e~~eAl~aGaDiImLDn~----------s~~~l~~av~~~~~~v~leaSGGI-t~~ 263 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAI-ECDNISQVEESLSNNVDMILLDNM----------SISEIKKAVDIVNGKSVLEVSGCV-NIR 263 (300)
T ss_dssp HHHHHHHHHSSSCCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSC-CTT
T ss_pred HHHHHHHHhCCCCCEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCceEEEEECCC-CHH
Confidence 34677777653 44443 578899999999999999999872 346677777767678999999999 667
Q ss_pred HHHHHHHcCCCEEEEcccccc
Q 020636 294 DVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.+..+.|+|.+.+|..-..
T Consensus 264 ~i~~~A~tGVD~IsvGalths 284 (300)
T 3l0g_A 264 NVRNIALTGVDYISIGCITNS 284 (300)
T ss_dssp THHHHHTTTCSEEECGGGTSS
T ss_pred HHHHHHHcCCCEEEeCccccC
Confidence 888888899999999976533
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00011 Score=67.20 Aligned_cols=89 Identities=24% Similarity=0.185 Sum_probs=67.8
Q ss_pred HHHHHHHhcC--CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC---CCeEEEecCCC
Q 020636 216 DVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVR 290 (323)
Q Consensus 216 ~i~~i~~~~~--~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~pvia~GGI~ 290 (323)
.++..|+..+ .++.+ .+.+.++++.+.++|+|+|.+.|. +.+.+.++.+.+.+ ++++.++|||
T Consensus 182 av~~ar~~~~~~~~I~V-EV~tleea~eA~~aGaD~I~LDn~----------~~e~l~~av~~l~~~~~~v~ieASGGI- 249 (285)
T 1o4u_A 182 AVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNL----------SPEEVKDISRRIKDINPNVIVEVSGGI- 249 (285)
T ss_dssp HHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHHHHCTTSEEEEEECC-
T ss_pred HHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCceEEEECCC-
Confidence 4777777663 35555 678899999999999999999772 33445555554433 7999999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+.+..+.|+|.+.+|+.....+
T Consensus 250 t~eni~~~a~tGVD~IsvGslt~sa~ 275 (285)
T 1o4u_A 250 TEENVSLYDFETVDVISSSRLTLQEV 275 (285)
T ss_dssp CTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred CHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence 56888888889999999999665544
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00024 Score=64.94 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=67.0
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC---CCeEEEecCCC
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVR 290 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~pvia~GGI~ 290 (323)
+.++..|+..+ .|+.+ .+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.+++ ++++.++|||
T Consensus 183 ~av~~ar~~~~~~~I~V-ev~t~eea~eal~aGaD~I~LDn~----------~~~~~~~~v~~l~~~~~~v~ieaSGGI- 250 (284)
T 1qpo_A 183 DALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDNF----------AVWQTQTAVQRRDSRAPTVMLESSGGL- 250 (284)
T ss_dssp HHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEETC----------CHHHHHHHHHHHHHHCTTCEEEEESSC-
T ss_pred HHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-
Confidence 34777777753 24544 677899999999999999988772 22334444443332 7899999999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+.+..+.|+|.+.+|+.....|
T Consensus 251 t~~~i~~~a~tGVD~isvG~l~~~a~ 276 (284)
T 1qpo_A 251 SLQTAATYAETGVDYLAVGALTHSVR 276 (284)
T ss_dssp CTTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred CHHHHHHHHhcCCCEEEECHHHcCCC
Confidence 67889999999999999999765554
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0015 Score=57.04 Aligned_cols=99 Identities=9% Similarity=0.032 Sum_probs=63.4
Q ss_pred HHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEcCCCCC---CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 217 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGAR---QLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs~~gg~---~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
++.+++ .+.++.+..+ .+..++..+.+.|.+.+++.-..-. ..++ +.+.+..+++.++.++||+++|||+
T Consensus 99 ~~~~~~-~g~~~~~~ll~~~t~~~~~~l~~~~~~~~vl~~a~~~~~~G~~g---~~~~i~~lr~~~~~~~~i~v~GGI~- 173 (216)
T 1q6o_A 99 LDVAKE-FNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAW---GEADITAIKRLSDMGFKVTVTGGLA- 173 (216)
T ss_dssp HHHHHH-TTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTTCCC---CHHHHHHHHHHHHTTCEEEEESSCC-
T ss_pred HHHHHH-cCCCceeeeeeCCChhhHHHHHhcCcHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhcCCCCcEEEECCcC-
Confidence 444544 3555433322 2255667777778887777221000 0111 3455566666554468899999998
Q ss_pred HHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 292 GTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
++.+.+++++|||.+.+||.+...++..+
T Consensus 174 ~~~~~~~~~aGad~ivvG~~I~~a~dp~~ 202 (216)
T 1q6o_A 174 LEDLPLFKGIPIHVFIAGRSIRDAASPVE 202 (216)
T ss_dssp GGGGGGGTTSCCSEEEESHHHHTSSCHHH
T ss_pred hhhHHHHHHcCCCEEEEeehhcCCCCHHH
Confidence 77788899999999999999988765443
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00034 Score=64.18 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=67.2
Q ss_pred HHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+|+..+ .|+.| .+.|.++++.++++|+|.|.+.| .+.+.+.++.+.+.+++++.++||| +.+.
T Consensus 199 Av~~~r~~~p~~~ieV-Evdtlde~~eAl~aGaD~I~LDn----------~~~~~l~~av~~i~~~v~ieaSGGI-~~~~ 266 (298)
T 3gnn_A 199 ALDAAFALNAEVPVQI-EVETLDQLRTALAHGARSVLLDN----------FTLDMMRDAVRVTEGRAVLEVSGGV-NFDT 266 (298)
T ss_dssp HHHHHHHHC--CCCEE-EESSHHHHHHHHHTTCEEEEEES----------CCHHHHHHHHHHHTTSEEEEEESSC-STTT
T ss_pred HHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhCCCCeEEEEcCC-CHHH
Confidence 4677777653 33333 37899999999999999999877 2345566666666568999999999 6677
Q ss_pred HHHHHHcCCCEEEEccccccCc
Q 020636 295 VFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+..+.|+|.+.+|+.-...|
T Consensus 267 i~~~a~tGVD~isvG~lt~sa~ 288 (298)
T 3gnn_A 267 VRAIAETGVDRISIGALTKDVR 288 (298)
T ss_dssp HHHHHHTTCSEEECGGGGTSCC
T ss_pred HHHHHHcCCCEEEECCeecCCC
Confidence 8888889999999998654433
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00045 Score=60.83 Aligned_cols=85 Identities=14% Similarity=0.014 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.+.++++.+.+.|++.+++.-....+.++...+.+.+..+++.++.+++|.++||| +++++.++..+|||.+.+||++.
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~a~~~~~~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI-~~~~~~~~~~aGad~~VvG~~I~ 200 (221)
T 3exr_A 122 WTYDQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGIT 200 (221)
T ss_dssp CCHHHHHHHHHTTCCEEEEECCHHHHHHTCCCCHHHHHHHHHHHHHTCEEEEESSC-CGGGGGGGTTCCCSEEEECHHHH
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHhcCCCccccCHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHCCCCEEEECchhh
Confidence 46788888888899988874221112233344455556666555436889999999 56678888899999999999988
Q ss_pred cCcchh
Q 020636 314 QCPLTE 319 (323)
Q Consensus 314 ~~~~~~ 319 (323)
..++..
T Consensus 201 ~a~dp~ 206 (221)
T 3exr_A 201 EAKNPA 206 (221)
T ss_dssp TSSSHH
T ss_pred CCCCHH
Confidence 766543
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0006 Score=60.24 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=41.5
Q ss_pred hcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhhc
Q 020636 277 TQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKIN 322 (323)
Q Consensus 277 ~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~~ 322 (323)
...+++|+..|||.+..|+..+...|+|++.||++++..+++.++.
T Consensus 173 ~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~~~~~i 218 (225)
T 1hg3_A 173 VNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAI 218 (225)
T ss_dssp HCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHH
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcCHHHHH
Confidence 3457899999999999999999999999999999999999888764
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0042 Score=54.02 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCCEEE--e----c--c---CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 215 KDVKWLQTITKLPILV--K----G--V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~v--K----~--i---~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
+.++.+++.++.|++- | + + .+.+.+..+.++|+|.|.+...-.... .....+.+.++++.++ ..++
T Consensus 46 ~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p--~~~~~~~i~~~~~~~~-~~~v 122 (223)
T 1y0e_A 46 EDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRP--KETLDELVSYIRTHAP-NVEI 122 (223)
T ss_dssp HHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCS--SSCHHHHHHHHHHHCT-TSEE
T ss_pred HHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecccCc--ccCHHHHHHHHHHhCC-CceE
Confidence 3577788888888842 1 1 1 356788999999999998853211100 0133567778877763 5666
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
+. ++.+..++.++..+|+|.++++..
T Consensus 123 ~~--~~~t~~e~~~~~~~G~d~i~~~~~ 148 (223)
T 1y0e_A 123 MA--DIATVEEAKNAARLGFDYIGTTLH 148 (223)
T ss_dssp EE--ECSSHHHHHHHHHTTCSEEECTTT
T ss_pred Ee--cCCCHHHHHHHHHcCCCEEEeCCC
Confidence 65 678999999999999999988654
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00079 Score=62.32 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=67.9
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+++..+ .|+.+ .+.|.++++.++++|+|+|.+.|. +.+.++++++.+.+++++.++|||. .+
T Consensus 220 ~Av~~ar~~~p~~kIeV-EVdtldea~eAl~aGaD~I~LDn~----------~~~~l~~av~~l~~~v~ieaSGGIt-~~ 287 (320)
T 3paj_A 220 QAISTAKQLNPGKPVEV-ETETLAELEEAISAGADIIMLDNF----------SLEMMREAVKINAGRAALENSGNIT-LD 287 (320)
T ss_dssp HHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHHTTSSEEEEESSCC-HH
T ss_pred HHHHHHHHhCCCCeEEE-EECCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCeEEEECCCC-HH
Confidence 34677777664 34444 678999999999999999999772 3466777777776689999999995 77
Q ss_pred HHHHHHHcCCCEEEEcccc
Q 020636 294 DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~ 312 (323)
.+.+..+.|+|.+.+|+.-
T Consensus 288 ~I~~~a~tGVD~isvGalt 306 (320)
T 3paj_A 288 NLKECAETGVDYISVGALT 306 (320)
T ss_dssp HHHHHHTTTCSEEECTHHH
T ss_pred HHHHHHHcCCCEEEECcee
Confidence 7887778999999999854
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.004 Score=54.73 Aligned_cols=170 Identities=14% Similarity=0.161 Sum_probs=107.7
Q ss_pred HHHHHHHHHHcCCceeecCCC---------CCC----HHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEe
Q 020636 90 EYATARAASAAGTIMTLSSWS---------TSS----VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 90 e~~~a~aa~~~G~~~~vs~~s---------~~~----~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~it 156 (323)
++.-.+.+.+.|..-.++|.- ... ++|+++..+++..+|+.. .|.+.+.+..++..+.+ +.++|-
T Consensus 9 n~~ei~~~~~~g~i~GVTTNPsli~k~~~~g~~~~~~~~ei~~~v~G~Vs~EV~a-~d~e~mi~eA~~L~~~~-~nv~IK 86 (223)
T 3s1x_A 9 NIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVS-TKYEGMVEEARKIHGLG-DNAVVK 86 (223)
T ss_dssp CHHHHHHHHHHTCCCEEECCHHHHHHHSCTTCCHHHHHHHHHHHCSSCEEEECCC-CSHHHHHHHHHHHHHTC-TTEEEE
T ss_pred CHHHHHHHHhcCCcccccCCHHHHHhhhccCCCHHHHHHHHHHhCCCCEEEEEcc-CCHHHHHHHHHHHHHhC-CCEEEE
Confidence 455666777777766665531 122 344555567778888863 56555544445544443 233333
Q ss_pred cCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHH---HHHHHHHhcCCCEEEecc
Q 020636 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---DVKWLQTITKLPILVKGV 233 (323)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~~~~pv~vK~i 233 (323)
+ | .+|+ .++.+.+. ++++-+-.+
T Consensus 87 I--P---------------------------------------------------~T~eGl~A~~~L~~~-GI~vn~Tli 112 (223)
T 3s1x_A 87 I--P---------------------------------------------------MTEDGLRAIKTLSSE-HINTNCTLV 112 (223)
T ss_dssp E--E---------------------------------------------------SSHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred e--C---------------------------------------------------CCHHHHHHHHHHHHC-CCcEEEEEe
Confidence 2 1 1333 34444443 788888899
Q ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.+...|..|.++||++|.. +-||-.|.+.+.+..+.++.+.+ +.+..|++ ..+|+..++.++..+|||.+-+.-
T Consensus 113 fS~~QA~~Aa~AGa~yISP--fvgRi~d~g~dG~~~v~~i~~~~~~~~~~T~Ila-AS~Rn~~~v~~aa~~G~d~~Tip~ 189 (223)
T 3s1x_A 113 FNPIQALLAAKAGVTYVSP--FVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILV-ASIRNPIHVLRSAVIGADVVTVPF 189 (223)
T ss_dssp CSHHHHHHHHHTTCSEEEE--BSHHHHHTTSCTHHHHHHHHHHHHHTTCCSEEEE-BSCCSHHHHHHHHHHTCSEEEECH
T ss_pred CCHHHHHHHHHcCCeEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCCEEEE-EeCCCHHHHHHHHHcCCCEEEeCH
Confidence 9999999999999998865 33443344445566666665544 22455555 559999999999999999998875
Q ss_pred c----cccCcch
Q 020636 311 M----PCQCPLT 318 (323)
Q Consensus 311 ~----~~~~~~~ 318 (323)
. ++.+|+.
T Consensus 190 ~vl~~l~~hplt 201 (223)
T 3s1x_A 190 NVLKSLMKHPKT 201 (223)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHHHcCCcH
Confidence 3 3445543
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0046 Score=54.71 Aligned_cols=86 Identities=22% Similarity=0.265 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCCEEE--ec------c---CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCCC
Q 020636 214 WKDVKWLQTITKLPILV--KG------V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRI 281 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~v--K~------i---~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~ 281 (323)
.++|+++|+.+++|++- |- + .+.+++..+.++|+|.|.+...... .+..+ +++..+.+ . .+
T Consensus 58 ~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~----~p~~l~~~i~~~~~-~--g~ 130 (232)
T 3igs_A 58 IDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQ----RPVAVEALLARIHH-H--HL 130 (232)
T ss_dssp HHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--TC
T ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccC----CHHHHHHHHHHHHH-C--CC
Confidence 45788999999999862 31 2 3567899999999999987542211 12222 34444433 2 45
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
++++ .+++.+++.++..+|||.|.+
T Consensus 131 ~v~~--~v~t~eea~~a~~~Gad~Ig~ 155 (232)
T 3igs_A 131 LTMA--DCSSVDDGLACQRLGADIIGT 155 (232)
T ss_dssp EEEE--ECCSHHHHHHHHHTTCSEEEC
T ss_pred EEEE--eCCCHHHHHHHHhCCCCEEEE
Confidence 6665 589999999999999999975
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.004 Score=54.99 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCCEE--Ee-c-----c---CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCCC
Q 020636 214 WKDVKWLQTITKLPIL--VK-G-----V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRI 281 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~--vK-~-----i---~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~ 281 (323)
.++|+++|+.+++|++ .| . + .+.+++..+.++|+|.|.+...... .+..+ +++..+.+ . .+
T Consensus 58 ~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~----~p~~l~~~i~~~~~-~--g~ 130 (229)
T 3q58_A 58 IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRS----RPVDIDSLLTRIRL-H--GL 130 (229)
T ss_dssp HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSC----CSSCHHHHHHHHHH-T--TC
T ss_pred HHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccC----ChHHHHHHHHHHHH-C--CC
Confidence 4578899999999986 23 1 1 3567899999999999987542211 12222 44444433 2 46
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
++++ .+++.+++.++..+|||.|.+
T Consensus 131 ~v~~--~v~t~eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 131 LAMA--DCSTVNEGISCHQKGIEFIGT 155 (229)
T ss_dssp EEEE--ECSSHHHHHHHHHTTCSEEEC
T ss_pred EEEE--ecCCHHHHHHHHhCCCCEEEe
Confidence 6665 589999999999999999975
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0076 Score=52.54 Aligned_cols=162 Identities=16% Similarity=0.141 Sum_probs=106.4
Q ss_pred HHHHHHHHHHcCCceeecCC------C-CCC----HHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 020636 90 EYATARAASAAGTIMTLSSW------S-TSS----VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (323)
Q Consensus 90 e~~~a~aa~~~G~~~~vs~~------s-~~~----~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd 158 (323)
++.-.+.+.+.|..-.++|. + ... +.||++..+++..+|+. ..|.+.+.+..++..+.+ +.++|-+
T Consensus 9 n~~ei~~~~~~g~i~GVTTNPsli~k~~g~~~~~~~~eI~~~v~G~Vs~EV~-a~d~e~mi~ea~~l~~~~-~nv~IKI- 85 (212)
T 3r8r_A 9 NIDEIREANELGILAGVTTNPSLVAKEANVSFHDRLREITDVVKGSVSAEVI-SLKAEEMIEEGKELAKIA-PNITVKI- 85 (212)
T ss_dssp CHHHHHHHHHTTCEEEEECCHHHHHTSCSSCHHHHHHHHHHHCCSCEEEECC-CSSHHHHHHHHHHHHTTC-TTEEEEE-
T ss_pred CHHHHHHHHhcCCcccccCCHHHHHHccCCCHHHHHHHHHHhcCCCEEEEEe-cCCHHHHHHHHHHHHHhC-CCEEEEe-
Confidence 55677888889987777764 2 223 34455556778888884 456655544444444443 2333332
Q ss_pred CCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHH---HHHHHHHhcCCCEEEeccCC
Q 020636 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---DVKWLQTITKLPILVKGVLT 235 (323)
Q Consensus 159 ~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~~~~pv~vK~i~~ 235 (323)
| .+|+ .++.+.+ -++++-+-.+.+
T Consensus 86 -P---------------------------------------------------~T~eGl~A~~~L~~-~GI~vn~TlifS 112 (212)
T 3r8r_A 86 -P---------------------------------------------------MTSDGLKAVRALTD-LGIKTNVTLIFN 112 (212)
T ss_dssp -E---------------------------------------------------SSHHHHHHHHHHHH-TTCCEEEEEECS
T ss_pred -C---------------------------------------------------CCHHHHHHHHHHHH-CCCcEEEEEeCC
Confidence 1 1333 3444444 378888889999
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
...|..|.++||++|.. +-||-.|.+.+.+..+.++.+.+ +-+..|++ -.+|+..++.++..+|||.+-+.-
T Consensus 113 ~~Qa~~Aa~AGa~yISP--fvgRi~d~~~dG~~~v~~i~~~~~~~~~~t~ila-AS~R~~~~v~~~a~~G~d~~Tip~ 187 (212)
T 3r8r_A 113 ANQALLAARAGATYVSP--FLGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIA-ASIRHPQHVTEAALRGAHIGTMPL 187 (212)
T ss_dssp HHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCCCEEEE-BSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHcCCeEEEe--ccchhhhcCCChHHHHHHHHHHHHHcCCCCEEEE-ecCCCHHHHHHHHHcCCCEEEcCH
Confidence 99999999999998865 33443344455666666666544 22455555 559999999999999999998874
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00024 Score=65.65 Aligned_cols=89 Identities=21% Similarity=0.135 Sum_probs=60.4
Q ss_pred HHHHhcCCCEEEecc---------CC----HH-HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH----hcCC
Q 020636 219 WLQTITKLPILVKGV---------LT----AE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA----TQGR 280 (323)
Q Consensus 219 ~i~~~~~~pv~vK~i---------~~----~e-~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~----~~~~ 280 (323)
...+.+++|+++=.. .+ .. -++.+.+.|+|.+.+.-.. ++ ..+.+.+.++.+. + .
T Consensus 149 ~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~----~~-~g~~~~~~~vv~~~~~~~--~ 221 (304)
T 1to3_A 149 ELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPL----YG-KGARSDLLTASQRLNGHI--N 221 (304)
T ss_dssp HHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGG----GG-CSCHHHHHHHHHHHHHTC--C
T ss_pred HHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCc----CC-CCCHHHHHHHHHhccccC--C
Confidence 333456888776532 11 12 3778889999999884310 00 0144555565555 5 7
Q ss_pred Ce-EEEecCCCCHH----HHHHHHHcCCCEEEEccccccC
Q 020636 281 IP-VFLDGGVRRGT----DVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 281 ~p-via~GGI~~~~----di~kal~lGAd~V~iG~~~~~~ 315 (323)
+| |++.||+ +.+ .+..++..||++|.+||.+...
T Consensus 222 ~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 222 MPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS 260 (304)
T ss_dssp SCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred CCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHhCc
Confidence 89 9999999 553 3777888999999999999877
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00072 Score=67.23 Aligned_cols=92 Identities=16% Similarity=0.039 Sum_probs=67.5
Q ss_pred EEEeccCCHHHHHHHHHcC---CCEEEEcCCCCC--CCCC--CcchHHHHHHHHHHh----cCCCeEEEecCCCCHHHHH
Q 020636 228 ILVKGVLTAEDARIAVQAG---AAGIIVSNHGAR--QLDY--VPATIMALEEVVKAT----QGRIPVFLDGGVRRGTDVF 296 (323)
Q Consensus 228 v~vK~i~~~e~a~~~~~~G---ad~i~vs~~gg~--~~~~--~~~~~~~l~~i~~~~----~~~~pvia~GGI~~~~di~ 296 (323)
++---+.+.++++.+.+.| +|+|.++.-..+ ..+. .+..++.+.++.+.+ ..++||++.||| +.+++.
T Consensus 110 iiG~S~ht~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~ 188 (540)
T 3nl6_A 110 VIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIE 188 (540)
T ss_dssp EEEEEECSHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHH
T ss_pred EEEEECCCHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHH
Confidence 3333457999999999999 999998542222 1111 123467777776654 137999999999 789999
Q ss_pred HHHH--------cCCCEEEEccccccCcchhh
Q 020636 297 KALA--------LGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 297 kal~--------lGAd~V~iG~~~~~~~~~~~ 320 (323)
++++ .||++|.+++.++..++-++
T Consensus 189 ~v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~ 220 (540)
T 3nl6_A 189 RVLYQCVSSNGKRSLDGICVVSDIIASLDAAK 220 (540)
T ss_dssp HHHHHCBCTTSSCBCSCEEESHHHHTCTTHHH
T ss_pred HHHHhhcccccccCceEEEEeHHHhcCCCHHH
Confidence 9997 89999999999988766543
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0019 Score=58.58 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.+.++.+|+.+++||+.|+ +.+...+..+..+|||+|.+...- + ....+..+.+..+.+ .+.++++ ++|.
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~---l--~~~~l~~l~~~a~~l--Gl~~lve--v~t~ 172 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAA---L--EQSVLVSMLDRTESL--GMTALVE--VHTE 172 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGG---S--CHHHHHHHHHHHHHT--TCEEEEE--ESSH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEeccc---C--CHHHHHHHHHHHHHC--CCcEEEE--cCCH
Confidence 4578889999999999996 467777899999999999883211 0 122333333333334 5666654 7899
Q ss_pred HHHHHHHHcCCCEEEEccc
Q 020636 293 TDVFKALALGASGIFVSIM 311 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~ 311 (323)
+++.+++.+|||.++++..
T Consensus 173 ee~~~A~~~Gad~IGv~~r 191 (272)
T 3qja_A 173 QEADRALKAGAKVIGVNAR 191 (272)
T ss_dssp HHHHHHHHHTCSEEEEESB
T ss_pred HHHHHHHHCCCCEEEECCC
Confidence 9999999999999999853
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.02 Score=54.41 Aligned_cols=209 Identities=23% Similarity=0.296 Sum_probs=117.8
Q ss_pred cCCCCCccceeecCcccc---cceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCCCCHHHHHhcCCCceeEEe
Q 020636 54 IDVSKIDMNTTVLGFKIS---MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQL 129 (323)
Q Consensus 54 ~~~~~~d~~t~i~g~~~~---~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~~~~eei~~~~~~~~~~QL 129 (323)
+....-++.+++.|..+. .+++++|++.. ..+.-..++++++++|..++.. ++... .. +..||
T Consensus 122 r~~~~~~t~i~i~~~~iG~~~~~~Iigpcsve---s~e~a~~~a~~~k~aGa~~vk~q~fkpr-------ts--~~~f~- 188 (385)
T 3nvt_A 122 RKNKKEDTIVTVKGLPIGNGEPVFVFGPCSVE---SYEQVAAVAESIKAKGLKLIRGGAFKPR-------TS--PYDFQ- 188 (385)
T ss_dssp TTTCCSCCCEEETTEEETSSSCEEEEECSBCC---CHHHHHHHHHHHHHTTCCEEECBSSCCC-------SS--TTSCC-
T ss_pred cccCCCCcEEEECCEEECCCCeEEEEEeCCcC---CHHHHHHHHHHHHHcCCCeEEcccccCC-------CC--hHhhc-
Confidence 344445666676665442 46888887764 3444568999999999987754 33211 11 22233
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
.-..+....+.+.+++.|...+. ++-.+ ..-++-..+ ++ .+. .+ +.
T Consensus 189 --gl~~egl~~L~~~~~~~Gl~~~t-e~~d~----~~~~~l~~~-vd-~lk------Ig---------s~---------- 234 (385)
T 3nvt_A 189 --GLGLEGLKILKRVSDEYGLGVIS-EIVTP----ADIEVALDY-VD-VIQ------IG---------AR---------- 234 (385)
T ss_dssp --CCTHHHHHHHHHHHHHHTCEEEE-ECCSG----GGHHHHTTT-CS-EEE------EC---------GG----------
T ss_pred --CCCHHHHHHHHHHHHHcCCEEEE-ecCCH----HHHHHHHhh-CC-EEE------EC---------cc----------
Confidence 11345555565667778876543 32111 111211111 00 000 00 00
Q ss_pred CccCHHHHHHHHHhcCCCEEEe-cc-CCHHHHH----HHHHcCCCEEEEcCCCCCCCCC---CcchHHHHHHHHHHhcCC
Q 020636 210 RSLSWKDVKWLQTITKLPILVK-GV-LTAEDAR----IAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGR 280 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK-~i-~~~e~a~----~~~~~Gad~i~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~ 280 (323)
-..+++.++.+. .++.||++| |. .+.++.. .+.+.|.+-|++.-.|.+.... ....+..++.+++.. .
T Consensus 235 ~~~n~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~--~ 311 (385)
T 3nvt_A 235 NMQNFELLKAAG-RVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKET--H 311 (385)
T ss_dssp GTTCHHHHHHHH-TSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--S
T ss_pred cccCHHHHHHHH-ccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhc--C
Confidence 002345566654 468999999 44 6777754 4456788777775444433222 123456677777766 6
Q ss_pred CeEEEe----cCCCCHH--HHHHHHHcCCCEEEEcccc
Q 020636 281 IPVFLD----GGVRRGT--DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 281 ~pvia~----GGI~~~~--di~kal~lGAd~V~iG~~~ 312 (323)
+||+.| +|-+.-- =...|.++||++++|=+.+
T Consensus 312 lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~ 349 (385)
T 3nvt_A 312 LPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHP 349 (385)
T ss_dssp SCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred CCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecC
Confidence 899887 4444432 3557889999999998755
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00082 Score=59.38 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=41.0
Q ss_pred cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhhc
Q 020636 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKIN 322 (323)
Q Consensus 278 ~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~~ 322 (323)
..+++|+..|||.+..|+..+...|+|++.||++++..+++.++.
T Consensus 171 ~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i 215 (226)
T 1w0m_A 171 FPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKI 215 (226)
T ss_dssp CTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHH
T ss_pred cCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHH
Confidence 457899999999999999999999999999999999999887764
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0014 Score=58.16 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCEEE-eccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 214 WKDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~v-K~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.+.|+++++.++..++- ..+.+.++++.+.++|||+|+..+ .+.+.+..+.+ . .+|++. |+.|+
T Consensus 73 ~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~----------~~~~vi~~~~~-~--gi~~ip--Gv~Tp 137 (232)
T 4e38_A 73 VEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG----------FNPNTVRACQE-I--GIDIVP--GVNNP 137 (232)
T ss_dssp HHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHH-H--TCEEEC--EECSH
T ss_pred HHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC----------CCHHHHHHHHH-c--CCCEEc--CCCCH
Confidence 56788999887544333 346899999999999999996421 23445544443 3 688887 68899
Q ss_pred HHHHHHHHcCCCEEEE
Q 020636 293 TDVFKALALGASGIFV 308 (323)
Q Consensus 293 ~di~kal~lGAd~V~i 308 (323)
+++.+|+++|||.|-+
T Consensus 138 tEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 138 STVEAALEMGLTTLKF 153 (232)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999977
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00077 Score=59.81 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=51.4
Q ss_pred cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 245 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 245 ~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.|...|.+-. .|. ....+.+.++++.+. ++||++-|||++++++.+++. |||+|.+|+++..+|.
T Consensus 158 ~g~~~vY~e~-sG~-----~g~~~~v~~ir~~~~-~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~~~~ 222 (235)
T 3w01_A 158 YRLPVMYIEY-SGI-----YGDVSKVQAVSEHLT-ETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYKDIK 222 (235)
T ss_dssp TCCSEEEEEC-TTS-----CCCHHHHHHHHTTCS-SSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHHCHH
T ss_pred cCCCEEEEec-CCC-----cCCHHHHHHHHHhcC-CCCEEEECCcCCHHHHHHHHc-CCCEEEECCceecCHH
Confidence 3777777644 332 235778888877652 689999999999999998777 9999999999998775
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0016 Score=61.57 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCCEEEecc-CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 214 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i-~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.+.++++++....|+.+... .+.+.++.+.++|+|.|++....|. .....+.+.++++.+ ++||++ |.+.+.
T Consensus 84 ~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~----~~~~~~~i~~i~~~~--~~~Viv-g~v~t~ 156 (361)
T 3khj_A 84 VNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTE 156 (361)
T ss_dssp HHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCS----BHHHHHHHHHHHHHC--CCEEEE-EEECSH
T ss_pred HHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCC----cHHHHHHHHHHHHhc--CCcEEE-ccCCCH
Confidence 34677777776788777743 4478899999999999988432221 122346777777776 789988 778999
Q ss_pred HHHHHHHHcCCCEEEEc
Q 020636 293 TDVFKALALGASGIFVS 309 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG 309 (323)
+++.++..+|||+|.+|
T Consensus 157 e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 157 EATKELIENGADGIKVG 173 (361)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCcCEEEEe
Confidence 99999999999999996
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0048 Score=53.60 Aligned_cols=78 Identities=27% Similarity=0.277 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
+.++.+++ -+..+-...+.+.++++.+.++|+|+++..+ .+.+.+....+ . .++++. |+.|.++
T Consensus 53 ~~i~~~~~-~~~~~gag~vl~~d~~~~A~~~GAd~v~~~~----------~d~~v~~~~~~-~--g~~~i~--G~~t~~e 116 (207)
T 2yw3_A 53 EALKALRK-SGLLLGAGTVRSPKEAEAALEAGAAFLVSPG----------LLEEVAALAQA-R--GVPYLP--GVLTPTE 116 (207)
T ss_dssp HHHHHHTT-SSCEEEEESCCSHHHHHHHHHHTCSEEEESS----------CCHHHHHHHHH-H--TCCEEE--EECSHHH
T ss_pred HHHHHHhC-CCCEEEeCeEeeHHHHHHHHHcCCCEEEcCC----------CCHHHHHHHHH-h--CCCEEe--cCCCHHH
Confidence 34566666 4444555556788999999999999996421 12334333333 4 567765 3999999
Q ss_pred HHHHHHcCCCEEEE
Q 020636 295 VFKALALGASGIFV 308 (323)
Q Consensus 295 i~kal~lGAd~V~i 308 (323)
+.++++.|||.|.+
T Consensus 117 ~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 117 VERALALGLSALKF 130 (207)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999988
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0042 Score=58.88 Aligned_cols=125 Identities=16% Similarity=0.063 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.||+++-+.+++. +..
T Consensus 146 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~-------------------------------------------------~~~ 176 (384)
T 2pgw_A 146 ETAEELARDAAVGHAQGERVFYLKVGRG-------------------------------------------------EKL 176 (384)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcCCC-------------------------------------------------HHH
Confidence 4677777778888889999998876430 112
Q ss_pred CHHHHHHHHHhc-CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 213 SWKDVKWLQTIT-KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
..+.++.+|+.+ +.++.+.. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||++
T Consensus 177 ~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~iPI~~ 246 (384)
T 2pgw_A 177 DLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQ-------P-TVSWSIPAMAHVREKV--GIPIVA 246 (384)
T ss_dssp HHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC-------C-SCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEeC-------C-CChhhHHHHHHHHhhC--CCCEEE
Confidence 356788888887 57777762 3466664 5556789888751 1 1234678888888887 899999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEccccccCc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIMPCQCP 316 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~ 316 (323)
++.+.+..|+.++++.| +|.|++....+|..
T Consensus 247 de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGi 278 (384)
T 2pgw_A 247 DQAAFTLYDVYEICRQRAADMICIGPREIGGI 278 (384)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEECHHHHTSH
T ss_pred eCCcCCHHHHHHHHHcCCCCEEEEcchhhCCH
Confidence 99999999999999987 99999976666543
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0068 Score=55.10 Aligned_cols=127 Identities=18% Similarity=0.246 Sum_probs=83.4
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
|...+.+.+.+.++.++++|++.+++.+=.+ |
T Consensus 105 Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~------------------------------------------------d 136 (287)
T 3iwp_A 105 YSDREIEVMKADIRLAKLYGADGLVFGALTE------------------------------------------------D 136 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEeeeCC------------------------------------------------C
Confidence 4344456777778888999999998754211 1
Q ss_pred CccCHHHHHHHHHhc-CCCEEEecc----CCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~i----~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.+.++++.+.. +.++.+--. .++.. .+.+.+.|+|.|-.|+. .......++.|+++.+...++++|
T Consensus 137 g~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG~----~~~a~~Gl~~Lk~Lv~~a~~rI~I 212 (287)
T 3iwp_A 137 GHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGC----DSSALEGLPLIKRLIEQAKGRIVV 212 (287)
T ss_dssp SCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECTT----SSSTTTTHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCC----CCChHHhHHHHHHHHHHhCCCCEE
Confidence 223444444444433 466766632 34444 46777889999988653 222355678888887777668999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEEEc
Q 020636 284 FLDGGVRRGTDVFKALA-LGASGIFVS 309 (323)
Q Consensus 284 ia~GGI~~~~di~kal~-lGAd~V~iG 309 (323)
++.|||+. +.+.+.++ +|++.+=..
T Consensus 213 maGGGV~~-~Ni~~l~~~tG~~~~H~S 238 (287)
T 3iwp_A 213 MPGGGITD-RNLQRILEGSGATEFHCS 238 (287)
T ss_dssp EECTTCCT-TTHHHHHHHHCCSEEEEC
T ss_pred EECCCcCH-HHHHHHHHhhCCCEEeEC
Confidence 99999975 44555555 899887653
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0016 Score=57.62 Aligned_cols=103 Identities=9% Similarity=0.020 Sum_probs=70.9
Q ss_pred HHHH---HHHHhcCCCEEEec--cCCHHHHHHHHHcC-CCEEEEc-CCCCC-CCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 215 KDVK---WLQTITKLPILVKG--VLTAEDARIAVQAG-AAGIIVS-NHGAR-QLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 215 ~~i~---~i~~~~~~pv~vK~--i~~~e~a~~~~~~G-ad~i~vs-~~gg~-~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
+.++ .+|+. +..+.+-. -...+.++.+.+.| +|.|.+- -+.|. .-...+..++-+.++++..+ +++|.++
T Consensus 102 ~~i~~~~~i~~~-G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~-~~~I~Vd 179 (227)
T 1tqx_A 102 RCIQLAKEIRDN-NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK-NLNIQVD 179 (227)
T ss_dssp HHHHHHHHHHTT-TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TCEEEEE
T ss_pred HHHHHHHHHHHc-CCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc-CCeEEEE
Confidence 3566 67664 43333322 23455667777776 9999652 22221 11234567788888887764 7899999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
|||. .+.+.++.++|||.+.+||.+++.+++++
T Consensus 180 GGI~-~~ti~~~~~aGAd~~V~GsaIf~~~d~~~ 212 (227)
T 1tqx_A 180 GGLN-IETTEISASHGANIIVAGTSIFNAEDPKY 212 (227)
T ss_dssp SSCC-HHHHHHHHHHTCCEEEESHHHHTCSSHHH
T ss_pred CCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHH
Confidence 9998 67899999999999999999998766544
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0013 Score=58.53 Aligned_cols=83 Identities=7% Similarity=-0.143 Sum_probs=55.9
Q ss_pred CHHHHHHHHHcCCCEEEE-cCCCC--CCCCCCcchHHHHHHHHHHhcC---CCeEEEecCCCCHHHHHHHHH--cCCCEE
Q 020636 235 TAEDARIAVQAGAAGIIV-SNHGA--RQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALA--LGASGI 306 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~v-s~~gg--~~~~~~~~~~~~l~~i~~~~~~---~~pvia~GGI~~~~di~kal~--lGAd~V 306 (323)
|+.+.......++|.|.+ +-+.| .|. ..+..++-+.++++.... +++|.++|||. .+.+.++.+ +|||.+
T Consensus 137 Tp~~~l~~~l~~~D~vlvMsv~pgfggq~-f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~ 214 (237)
T 3cu2_A 137 TPISELEPYLDQIDVIQLLTLDPRNGTKY-PSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWL 214 (237)
T ss_dssp SCGGGGTTTTTTCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCE
T ss_pred ChHHHHHHHhhcCceeeeeeeccCcCCee-cChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEE
Confidence 443333333458998865 22222 121 134456777777766532 58999999998 688999999 999999
Q ss_pred EEccccccCcchhh
Q 020636 307 FVSIMPCQCPLTEK 320 (323)
Q Consensus 307 ~iG~~~~~~~~~~~ 320 (323)
.+||.+++. +.++
T Consensus 215 VvGSaIf~~-d~~~ 227 (237)
T 3cu2_A 215 VSGSALFSG-ELKT 227 (237)
T ss_dssp EECGGGGSS-CHHH
T ss_pred EEeeHHhCC-CHHH
Confidence 999999986 5443
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0052 Score=57.97 Aligned_cols=124 Identities=16% Similarity=0.137 Sum_probs=91.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+++.+.+.++++.+.|++++-+.++++. +...
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~------------------------------------------------~~~~ 177 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRPD------------------------------------------------LKED 177 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCSS------------------------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCC------------------------------------------------HHHH
Confidence 6777777778888899999887764310 1123
Q ss_pred HHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+|+.+ +.++.++. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||++
T Consensus 178 ~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPI~~ 247 (371)
T 2ovl_A 178 VDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWIEE-------P-TIPDDLVGNARIVRES--GHTIAG 247 (371)
T ss_dssp HHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC-------C-SCTTCHHHHHHHHHHH--CSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC-------C-CCcccHHHHHHHHhhC--CCCEEe
Confidence 56788888887 57888883 3566664 4555778887741 1 1234678888888888 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEccccccC
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIMPCQC 315 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~ 315 (323)
++.+.+..|+.++++.| +|.|++....+|.
T Consensus 248 dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 278 (371)
T 2ovl_A 248 GENLHTLYDFHNAVRAGSLTLPEPDVSNIGG 278 (371)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEECCCTTTTTS
T ss_pred CCCCCCHHHHHHHHHcCCCCEEeeCccccCC
Confidence 99999999999999987 9999997666553
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0047 Score=57.94 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=90.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++-+.++++ ++..
T Consensus 143 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~ 174 (359)
T 1mdl_A 143 DGVKLATERAVTAAELGFRAVKTRIGYP------------------------------------------------ALDQ 174 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCS------------------------------------------------SHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC------------------------------------------------CHHH
Confidence 4566666777788889999998876431 1112
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.++. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~-------P-~~~~~~~~~~~l~~~~--~iPI~ 244 (359)
T 1mdl_A 175 DLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEE-------P-TLQHDYEGHQRIQSKL--NVPVQ 244 (359)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCEEC-------C-SCTTCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEC-------C-CChhhHHHHHHHHHhC--CCCEE
Confidence 356788888887 57888873 3466654 5567789988741 1 1234678888888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPCQ 314 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~~ 314 (323)
+++.+.+..|+.+++..| +|.|++....+|
T Consensus 245 ~de~~~~~~~~~~~i~~~~~d~v~ik~~~~G 275 (359)
T 1mdl_A 245 MGENWLGPEEMFKALSIGACRLAMPDAMKIG 275 (359)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCBTTTTT
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEeecchhhC
Confidence 999999999999999987 999999765554
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00051 Score=68.63 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-----------HHHHHHHHcC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALG 302 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-----------~di~kal~lG 302 (323)
.+.|+.+.+.|+|.+.+.+-.+.. .......++.+.++.+.+ .+||++.|||++. +++.+++.+|
T Consensus 283 ~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~--~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aG 360 (555)
T 1jvn_A 283 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG 360 (555)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC--CCcEEEeCccccchhcccccchHHHHHHHHHHcC
Confidence 345888889999999876533311 011234678888887766 8999999999998 4499999999
Q ss_pred CCEEEEcccccc
Q 020636 303 ASGIFVSIMPCQ 314 (323)
Q Consensus 303 Ad~V~iG~~~~~ 314 (323)
||.|.||+....
T Consensus 361 ad~V~igt~~~~ 372 (555)
T 1jvn_A 361 ADKVSIGTDAVY 372 (555)
T ss_dssp CSEEEECHHHHH
T ss_pred CCEEEECCHHhh
Confidence 999999998765
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0008 Score=60.74 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|++.+.+-. +++ ...+.+.++.+.+ .+||...|||++- |+.+.+ +||+.|.+|+.++.+
T Consensus 41 ~~~A~~~~~~Ga~~l~vvD-----L~~--~n~~~i~~i~~~~--~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~~ 109 (260)
T 2agk_A 41 SYYAKLYKDRDVQGCHVIK-----LGP--NNDDAAREALQES--PQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFTK 109 (260)
T ss_dssp HHHHHHHHHTTCTTCEEEE-----ESS--SCHHHHHHHHHHS--TTTSEEESSCCTT-THHHHT-TTCSCEEECGGGBCT
T ss_pred HHHHHHHHHcCCCEEEEEe-----CCC--CCHHHHHHHHhcC--CceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHhh
Confidence 4668999999999987732 111 4678888888887 7999999999987 999999 999999999999887
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0029 Score=57.07 Aligned_cols=42 Identities=24% Similarity=0.528 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.++.++++++..++|+++. ||.+++++..+.++|||+|+|..
T Consensus 166 ~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGS 208 (264)
T 1xm3_A 166 NPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNT 208 (264)
T ss_dssp CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcH
Confidence 3778899999889999998 67899999999999999999954
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0038 Score=56.63 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.++++|+.++.|+++. |+.++++++.+...|||+++|.
T Consensus 197 ~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 197 HALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp HHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 456899999889999997 6789999999999999999994
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0054 Score=54.04 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=77.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+.+...+.++.+.+.|++.+-++...+
T Consensus 25 ~~~~~~~~~~~~al~~gGv~~iel~~k~~--------------------------------------------------- 53 (224)
T 1vhc_A 25 LDNADDILPLADTLAKNGLSVAEITFRSE--------------------------------------------------- 53 (224)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTST---------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccCc---------------------------------------------------
Confidence 35666667778888888999888764221
Q ss_pred cCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 212 LSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
...+.++.+++.++ .-+....+.+.++++.+.++|||+|+.. + .+.+.+...++ . ..+++. |+.
T Consensus 54 ~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p---~-------~d~~v~~~ar~-~--g~~~i~--Gv~ 118 (224)
T 1vhc_A 54 AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP---G-------LNPKIVKLCQD-L--NFPITP--GVN 118 (224)
T ss_dssp THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS---S-------CCHHHHHHHHH-T--TCCEEC--EEC
T ss_pred hHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEEC---C-------CCHHHHHHHHH-h--CCCEEe--ccC
Confidence 01346777888774 3233334578899999999999999431 1 23444444444 4 566665 499
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 020636 291 RGTDVFKALALGASGIFV 308 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~i 308 (323)
|++++.+|+++|||.|.+
T Consensus 119 t~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 119 NPMAIEIALEMGISAVKF 136 (224)
T ss_dssp SHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999999998
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.045 Score=47.96 Aligned_cols=131 Identities=16% Similarity=0.217 Sum_probs=86.8
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
|...+.+.+.+-++.++++|++++++.+=.+ |
T Consensus 70 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~------------------------------------------------d 101 (224)
T 2bdq_A 70 YNDLELRIMEEDILRAVELESDALVLGILTS------------------------------------------------N 101 (224)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 6555667778888889999999998754221 2
Q ss_pred CccCHHHHHHHHHhc-CCCEEEec----c--CCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKG----V--LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~----i--~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
..++.+.++++.+.. +.|+.+.- + .++.. .+.+.+.|++.|-.|+.-. -......++.|+++.+...+++
T Consensus 102 g~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILTSG~~~--~~~a~~g~~~L~~Lv~~a~~ri 179 (224)
T 2bdq_A 102 NHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILLHGSSN--GEPIIENIKHIKALVEYANNRI 179 (224)
T ss_dssp SSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEECSCSS--CCCGGGGHHHHHHHHHHHTTSS
T ss_pred CCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEECCCCCC--CCcHHHHHHHHHHHHHhhCCCe
Confidence 334566666666554 57777762 3 34443 5778899999998765222 1123445677888777666689
Q ss_pred eEEEecCCCCHHHHHHHH-HcCCCEEEEccc
Q 020636 282 PVFLDGGVRRGTDVFKAL-ALGASGIFVSIM 311 (323)
Q Consensus 282 pvia~GGI~~~~di~kal-~lGAd~V~iG~~ 311 (323)
.|++-|||+. +.+.+.+ .+|++.+=....
T Consensus 180 ~Im~GgGV~~-~Ni~~l~~~tGv~e~H~s~i 209 (224)
T 2bdq_A 180 EIMVGGGVTA-ENYQYICQETGVKQAHGTRI 209 (224)
T ss_dssp EEEECSSCCT-TTHHHHHHHHTCCEEEETTC
T ss_pred EEEeCCCCCH-HHHHHHHHhhCCCEEccccc
Confidence 9999899974 3444445 479988876543
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.023 Score=49.67 Aligned_cols=87 Identities=18% Similarity=0.145 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCCEEE--e-c-------c-CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 216 DVKWLQTITKLPILV--K-G-------V-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 216 ~i~~i~~~~~~pv~v--K-~-------i-~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
.++.+++.++.|++- + . + .+.+.++.+.++|+|.|.+...-....+ +....+.+..+++..+ +.+|+
T Consensus 60 ~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~-~~~~~~~i~~i~~~~~-~~~v~ 137 (234)
T 1yxy_A 60 DIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHD-GLDIASFIRQVKEKYP-NQLLM 137 (234)
T ss_dssp HHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTT-CCCHHHHHHHHHHHCT-TCEEE
T ss_pred HHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCCCC-CccHHHHHHHHHHhCC-CCeEE
Confidence 467777778888741 1 1 1 3568899999999999988543211111 1133567777777663 45655
Q ss_pred EecCCCCHHHHHHHHHcCCCEE
Q 020636 285 LDGGVRRGTDVFKALALGASGI 306 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V 306 (323)
+ ++++.+++.+++.+|||.|
T Consensus 138 ~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 138 A--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp E--ECSSHHHHHHHHHTTCSEE
T ss_pred E--eCCCHHHHHHHHHcCCCEE
Confidence 4 6899999999999999999
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.024 Score=51.95 Aligned_cols=175 Identities=11% Similarity=0.070 Sum_probs=105.3
Q ss_pred HHHHHHHHcCCceeecCCC-------------CCCHHHH-------HhcCCCceeEEe---eecCChHHHHHHHHHHHHc
Q 020636 92 ATARAASAAGTIMTLSSWS-------------TSSVEEV-------ASTGPGIRFFQL---YVYKDRNVVAQLVRRAERA 148 (323)
Q Consensus 92 ~~a~aa~~~G~~~~vs~~s-------------~~~~eei-------~~~~~~~~~~QL---y~~~d~~~~~~~~~~a~~~ 148 (323)
..|+.+.++|+..++.+-+ ..+++|+ .+..+.|....+ | ..+++...+.++++.++
T Consensus 28 ~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gy-g~~~~~~~~~v~~l~~a 106 (295)
T 1xg4_A 28 NHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGF-GSSAFNVARTVKSMIKA 106 (295)
T ss_dssp HHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCS-SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCccc-CCCHHHHHHHHHHHHHc
Confidence 6899999999876644311 1345553 333445677777 4 23677778888888899
Q ss_pred CCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc-CCC
Q 020636 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLP 227 (323)
Q Consensus 149 G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~p 227 (323)
|+.++.|.=.+. |++.. ++.+ ..+ ...+...+.|+.+++.. +.+
T Consensus 107 Ga~gv~iEd~~~---------------~k~cg--H~~g-----------k~L-------~p~~~~~~~I~Aa~~a~~~~~ 151 (295)
T 1xg4_A 107 GAAGLHIEDQVG---------------AKRSG--HRPN-----------KAI-------VSKEEMVDRIRAAVDAKTDPD 151 (295)
T ss_dssp TCSEEEEECBCS---------------SCCCT--TSSS-----------CCB-------CCHHHHHHHHHHHHHHCSSTT
T ss_pred CCeEEEECCCCC---------------CcccC--CCCC-----------Ccc-------CCHHHHHHHHHHHHHhccCCC
Confidence 999888752210 11100 0000 000 00001123455555554 445
Q ss_pred EEEeccC----------CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC--CCHH-H
Q 020636 228 ILVKGVL----------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRGT-D 294 (323)
Q Consensus 228 v~vK~i~----------~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI--~~~~-d 294 (323)
+.+.+.. ..+.|+.+.++|||.|.+-+ .++.+.+.++.+.+ ++|++++.-. .++. .
T Consensus 152 ~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~---------~~~~~~~~~i~~~~--~iP~~~N~~~~g~~p~~~ 220 (295)
T 1xg4_A 152 FVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEA---------ITELAMYRQFADAV--QVPILANITEFGATPLFT 220 (295)
T ss_dssp SEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETT---------CCSHHHHHHHHHHH--CSCBEEECCSSSSSCCCC
T ss_pred cEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeC---------CCCHHHHHHHHHHc--CCCEEEEecccCCCCCCC
Confidence 5555431 23557889999999999843 35678888999988 7999875532 2222 3
Q ss_pred HHHHHHcCCCEEEEccccc
Q 020636 295 VFKALALGASGIFVSIMPC 313 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~ 313 (323)
..+.-++|.+.|.+|..++
T Consensus 221 ~~eL~~~G~~~v~~~~~~~ 239 (295)
T 1xg4_A 221 TDELRSAHVAMALYPLSAF 239 (295)
T ss_dssp HHHHHHTTCSEEEESSHHH
T ss_pred HHHHHHcCCCEEEEChHHH
Confidence 3444469999999998665
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.008 Score=56.80 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 215 KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+.++++|+.-.+++.+-.. ...+.++.+.++|+|.|++....|. ....++.+.++++..+ +++|++ |.+.|
T Consensus 86 ~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~----~~~~~~~I~~ik~~~p-~v~Vi~-G~v~t 159 (366)
T 4fo4_A 86 AQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGH----SEGVLQRIRETRAAYP-HLEIIG-GNVAT 159 (366)
T ss_dssp HHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHCT-TCEEEE-EEECS
T ss_pred HHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCC----CHHHHHHHHHHHHhcC-CCceEe-eeeCC
Confidence 4566666643344444322 3578899999999999988533332 1234566777877764 578777 77999
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 020636 292 GTDVFKALALGASGIFVS 309 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG 309 (323)
.+++.++..+|||+|.+|
T Consensus 160 ~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 160 AEGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999995
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.011 Score=55.97 Aligned_cols=121 Identities=16% Similarity=0.087 Sum_probs=88.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++-+.+++ .++..
T Consensus 163 ~~~e~~~~~a~~~~~~Gf~~vKik~g~------------------------------------------------~~~~~ 194 (388)
T 2nql_A 163 RTLKARGELAKYWQDRGFNAFKFATPV------------------------------------------------ADDGP 194 (388)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEGGG------------------------------------------------CTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCC------------------------------------------------CChHH
Confidence 467777777788888999988776432 02335
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
.+.++.+|+.+ +.++.+.. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||+
T Consensus 195 -~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPI~ 263 (388)
T 2nql_A 195 -AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFAEA-------P-VWTEDIAGLEKVSKNT--DVPIA 263 (388)
T ss_dssp -HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCEEC-------C-SCTTCHHHHHHHHTSC--CSCEE
T ss_pred -HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEEC-------C-CChhhHHHHHHHHhhC--CCCEE
Confidence 67788899877 57888873 3566664 4556678887741 1 1234677888888776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
+++.+.+..++.++++.| +|.|++-...
T Consensus 264 ~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 292 (388)
T 2nql_A 264 VGEEWRTHWDMRARIERCRIAIVQPEMGH 292 (388)
T ss_dssp ECTTCCSHHHHHHHHTTSCCSEECCCHHH
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEecCCC
Confidence 999999999999999987 9999885433
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.029 Score=52.96 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++-+.++++..+ + ..++..
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~---------~---------------------------------~~~~~~ 185 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS---------W---------------------------------APDVKM 185 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTST---------T---------------------------------CCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCccc---------c---------------------------------ccchHH
Confidence 4677777777888888999999887654211 0 002223
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.+.. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||+
T Consensus 186 ~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~-------P-~~~~~~~~~~~l~~~~--~iPIa 255 (382)
T 1rvk_A 186 DLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWIEE-------P-MDEQSLSSYKWLSDNL--DIPVV 255 (382)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEEEC-------C-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEeC-------C-CChhhHHHHHHHHhhC--CCCEE
Confidence 467789999987 57888873 3566664 4556678887742 1 1134678888888887 79999
Q ss_pred EecCCCC-HHHHHHHHHcC-CCEEEEccccc
Q 020636 285 LDGGVRR-GTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~-~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
+++.+.+ ..|+.++++.| +|.|++--..+
T Consensus 256 ~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~ 286 (382)
T 1rvk_A 256 GPESAAGKHWHRAEWIKAGACDILRTGVNDV 286 (382)
T ss_dssp ECSSCSSHHHHHHHHHHTTCCSEEEECHHHH
T ss_pred EeCCccCcHHHHHHHHHcCCCCEEeeCchhc
Confidence 9999999 99999999987 89999854433
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.11 Score=46.65 Aligned_cols=97 Identities=24% Similarity=0.382 Sum_probs=63.2
Q ss_pred CHHHHHHHHHhcCCCEEEecc-C-CHHHHHHHH----HcCCCEEEEcCCCCCCC-CC--CcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVKGV-L-TAEDARIAV----QAGAAGIIVSNHGARQL-DY--VPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-~-~~e~a~~~~----~~Gad~i~vs~~gg~~~-~~--~~~~~~~l~~i~~~~~~~~pv 283 (323)
+...++++.+ ++.||++|.- . +.+++..+. ..|.+-+.+.-+|++.. .. ....+..++.+++.. .+||
T Consensus 119 n~~ll~~~a~-~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~--~~pV 195 (262)
T 1zco_A 119 NFELLKEVGK-VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELS--HLPI 195 (262)
T ss_dssp CHHHHHHHTT-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCE
T ss_pred CHHHHHHHHh-cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhh--CCCE
Confidence 3456777766 6899999954 3 788865444 67876676655554432 11 122456677777765 6899
Q ss_pred EEecCCCCHH-----H-HHHHHHcCCCEEEEcccc
Q 020636 284 FLDGGVRRGT-----D-VFKALALGASGIFVSIMP 312 (323)
Q Consensus 284 ia~GGI~~~~-----d-i~kal~lGAd~V~iG~~~ 312 (323)
+++..=.++. . ...+.++||++++|=+.+
T Consensus 196 i~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~ 230 (262)
T 1zco_A 196 IVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHP 230 (262)
T ss_dssp EECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred EEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 8865443333 3 445778999999998875
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.026 Score=53.78 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=91.9
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCC-
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR- 210 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 210 (323)
..+++.+.+.++++.+.|++++-+.. +|+.+ +.
T Consensus 143 ~~~~~~~~~~a~~~~~~Gf~~iKik~-spvG~---------------------------------------------~~~ 176 (401)
T 2hzg_A 143 GDTPQETLERARAARRDGFAAVKFGW-GPIGR---------------------------------------------GTV 176 (401)
T ss_dssp CSSHHHHHHHHHHHHHTTCSEEEEES-TTTTS---------------------------------------------SCH
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEcC-CCCCC---------------------------------------------CHH
Confidence 35777777778888889999998764 33310 11
Q ss_pred ccCHHHHHHHHHhc--CCCEEEec--cC--CHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH-HhcC
Q 020636 211 SLSWKDVKWLQTIT--KLPILVKG--VL--TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK-ATQG 279 (323)
Q Consensus 211 ~~~~~~i~~i~~~~--~~pv~vK~--i~--~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~-~~~~ 279 (323)
....+.++.+|+.+ +.++.+.. .. +.+++ +.+.+.|++.|.- . ..+..++.+.++++ .+
T Consensus 177 ~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~~-- 246 (401)
T 2hzg_A 177 AADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWLEE-------P-FDAGALAAHAALAGRGA-- 246 (401)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEEEC-------C-SCTTCHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEC-------C-CCccCHHHHHHHHhhCC--
Confidence 23456788899887 57888873 35 77774 5667889988741 1 12346778888877 66
Q ss_pred CCeEEEecCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 020636 280 RIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQ 314 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~ 314 (323)
++||++++.+.+..|+.+++..| +|.|++-...+|
T Consensus 247 ~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 282 (401)
T 2hzg_A 247 RVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIG 282 (401)
T ss_dssp SSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHHHT
T ss_pred CCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcchhC
Confidence 79999999999999999999976 999999654444
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0093 Score=52.09 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=77.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+.+...+.++.+.+.|++.+-++...+.
T Consensus 24 ~~~~~~~~~~~~al~~gGv~~iel~~k~~~-------------------------------------------------- 53 (214)
T 1wbh_A 24 VKKLEHAVPMAKALVAGGVRVLNVTLRTEC-------------------------------------------------- 53 (214)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEESCSTT--------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCChh--------------------------------------------------
Confidence 456666677888888899998887642211
Q ss_pred cCHHHHHHHHHhcCCCE-EEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 212 LSWKDVKWLQTITKLPI-LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv-~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
..+.++.+++.++..+ ....+.+.++++.+.++|||+|+..+ .+.+.+.. ++.. .++++. |+.
T Consensus 54 -~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p~----------~d~~v~~~-~~~~--g~~~i~--G~~ 117 (214)
T 1wbh_A 54 -AVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG----------LTEPLLKA-ATEG--TIPLIP--GIS 117 (214)
T ss_dssp -HHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS----------CCHHHHHH-HHHS--SSCEEE--EES
T ss_pred -HHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcCC----------CCHHHHHH-HHHh--CCCEEE--ecC
Confidence 1346777888775323 33345788999999999999996421 12333333 3334 577776 499
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 020636 291 RGTDVFKALALGASGIFV 308 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~i 308 (323)
|++++.+++++|||.|.+
T Consensus 118 t~~e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 118 TVSELMLGMDYGLKEFKF 135 (214)
T ss_dssp SHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999999988
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0093 Score=53.48 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.||++|.|-.-.+ .-....+.|..+++.+ ++||+.-++|.+..++..++++|||+|.++...+.
T Consensus 68 ~~~A~~~~~~GA~~isvlt~~~----~f~G~~~~l~~i~~~v--~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~- 140 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTEPH----RFGGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG- 140 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCS----SSCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG-
T ss_pred HHHHHHHHHcCCCEEEEecchh----hhccCHHHHHHHHHhc--CCCEEECCcCCCHHHHHHHHHcCCCEEEECccchH-
Confidence 5668899999999998732111 1123566777888877 89999999999999999999999999999988776
Q ss_pred cchhh
Q 020636 316 PLTEK 320 (323)
Q Consensus 316 ~~~~~ 320 (323)
...++
T Consensus 141 ~~l~~ 145 (254)
T 1vc4_A 141 ELTGA 145 (254)
T ss_dssp GGHHH
T ss_pred HHHHH
Confidence 44443
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.023 Score=52.06 Aligned_cols=157 Identities=16% Similarity=0.102 Sum_probs=88.3
Q ss_pred ccceEECcccccccCCcHHHHHHHHHHHHcCCc-ee-ecCCCC----------CCHH---H----HHhcCCCceeEEeee
Q 020636 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTI-MT-LSSWST----------SSVE---E----VASTGPGIRFFQLYV 131 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~-~~-vs~~s~----------~~~e---e----i~~~~~~~~~~QLy~ 131 (323)
..|++++-++. .++.-...++.+.++|.. ++ ++ +++ .+.| + +++..+-|.++.+++
T Consensus 93 ~~p~~~~i~g~----~~~~~~~~a~~~~~~g~d~~iein-~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~ 167 (311)
T 1jub_A 93 EGPIFFSIAGM----SAAENIAMLKKIQESDFSGITELN-LSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPP 167 (311)
T ss_dssp SSCCEEEECCS----SHHHHHHHHHHHHHSCCCSEEEEE-SCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECC
T ss_pred CCCEEEEcCCC----CHHHHHHHHHHHHhcCCCeEEEEe-ccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 46777664321 333345778888888865 33 32 210 1222 2 222233578888876
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+.+...++++.++++|+++|.++ +....|. .-+.+.. ...... .. ..+.-++. ....
T Consensus 168 ~~~~~~~~~~a~~~~~~G~d~i~v~-~~~~~g~-~i~~~~~-----~~~~~~------~~-~~gG~sg~-------~~~~ 226 (311)
T 1jub_A 168 YFDLVHFDIMAEILNQFPLTYVNSV-NSIGNGL-FIDPEAE-----SVVIKP------KD-GFGGIGGA-------YIKP 226 (311)
T ss_dssp CCSHHHHHHHHHHHTTSCCCEEEEC-CCEEEEE-CEETTTT-----EESCSG------GG-GEEEEESG-------GGHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEec-CCCCcCc-eeccCCC-----Cccccc------CC-CCCccccc-------cccH
Confidence 6677777788899999999998875 2210000 0000000 000000 00 00000000 0011
Q ss_pred cCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..|+.++++++.+ ++||+.- |+.+.++|.+++.+|||+|.+.
T Consensus 227 ~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg 271 (311)
T 1jub_A 227 TALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIG 271 (311)
T ss_dssp HHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 3478899999988 7898766 6789999999999999999884
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.017 Score=51.69 Aligned_cols=107 Identities=23% Similarity=0.332 Sum_probs=79.3
Q ss_pred CceeEEeeec-------CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc
Q 020636 123 GIRFFQLYVY-------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (323)
Q Consensus 123 ~~~~~QLy~~-------~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
+..|+||++- .|+..+.+..+++.+.|++.+.+++|.|+.++|..++...+-+|. +. +. +
T Consensus 102 ~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPl--------g~---pI--G 168 (265)
T 1wv2_A 102 GHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPL--------AG---LI--G 168 (265)
T ss_dssp SCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEEC--------SS---ST--T
T ss_pred CCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeC--------Cc---cC--C
Confidence 4468888775 567777777777777899999889999998888777654332221 00 00 0
Q ss_pred cchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+ ..-.+++.|+.+++..++||++. ||.+++||..+.+.|||+|.|.
T Consensus 169 sG-----------~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVg 216 (265)
T 1wv2_A 169 SG-----------LGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMN 216 (265)
T ss_dssp CC-----------CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred CC-----------CCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 11 12236888999999889999998 6899999999999999999984
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.041 Score=51.70 Aligned_cols=122 Identities=9% Similarity=0.057 Sum_probs=87.7
Q ss_pred CChHHHHHHHHHHHH-cCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 133 KDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~-~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
.+++.+.+.++++.+ .|++++-+.++++. +.
T Consensus 141 ~~~e~~~~~a~~~~~~~Gf~~iKik~g~~~------------------------------------------------~~ 172 (370)
T 1nu5_A 141 GDTARDIDSALEMIETRRHNRFKVKLGART------------------------------------------------PA 172 (370)
T ss_dssp SCHHHHHHHHHHHHHTTSCSEEEEECSSSC------------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHhCCccEEEEecCCCC------------------------------------------------hH
Confidence 467777777778877 99999887654311 11
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.++.+.. ..+.+++ +.+.+.|++.|. +. ..+..++.+.++++.+ ++||
T Consensus 173 ~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~ipI 242 (370)
T 1nu5_A 173 QDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELVE-------QP-VPRANFGALRRLTEQN--GVAI 242 (370)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEE-------CC-SCTTCHHHHHHHHHHC--SSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceEe-------CC-CCcccHHHHHHHHHhC--CCCE
Confidence 2355678888876 36777773 3466664 556678988774 11 1234678888888877 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
++++.+.+..|+.+++..| +|.|++--.-
T Consensus 243 a~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 272 (370)
T 1nu5_A 243 LADESLSSLSSAFELARDHAVDAFSLKLCN 272 (370)
T ss_dssp EESTTCCSHHHHHHHHHTTCCSEEEECHHH
T ss_pred EeCCCCCCHHHHHHHHHhCCCCEEEEchhh
Confidence 9999999999999999987 8999985433
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.023 Score=54.00 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=90.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+++.+.+.++++.+.|++++=+.+++. +.
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~iKiKvG~~-------------------------------------------------~~ 179 (389)
T 3ozy_A 149 DLTPDQAADELAGWVEQGFTAAKLKVGRA-------------------------------------------------PR 179 (389)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEECCSC-------------------------------------------------HH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEeeccCCC-------------------------------------------------HH
Confidence 45778788888888889999988776431 11
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHH-HHhcCCCe
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV-KATQGRIP 282 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~-~~~~~~~p 282 (323)
...+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|++.|.- . ..+..++.+.+++ +.+ ++|
T Consensus 180 ~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~~--~iP 249 (389)
T 3ozy_A 180 KDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWFEE-------P-LSIDDIEGHRILRAQGT--PVR 249 (389)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEEES-------C-SCTTCHHHHHHHHTTCC--SSE
T ss_pred HHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEEEC-------C-CCcccHHHHHHHHhcCC--CCC
Confidence 2355788888887 46788773 3566664 5566789888841 1 1123577788887 666 799
Q ss_pred EEEecCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 020636 283 VFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQ 314 (323)
Q Consensus 283 via~GGI~~~~di~kal~lG-Ad~V~iG~~~~~ 314 (323)
|++++.+.+..|+.++++.| +|.|++--..+|
T Consensus 250 Ia~dE~i~~~~~~~~~i~~~~~d~v~ik~~~~G 282 (389)
T 3ozy_A 250 IATGENLYTRNAFNDYIRNDAIDVLQADASRAG 282 (389)
T ss_dssp EEECTTCCHHHHHHHHHHTTCCSEECCCTTTSS
T ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCccccC
Confidence 99999999999999999986 899988655543
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.025 Score=53.75 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+++.+.+.++++.+.||+++=+.++.+ +....
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~~ 193 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQP------------------------------------------------DGALD 193 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCCS------------------------------------------------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC------------------------------------------------CHHHH
Confidence 677777777888889999887764310 11134
Q ss_pred HHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+|+.+ +.+|.+.. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||++
T Consensus 194 ~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~-------P-~~~~~~~~~~~l~~~~--~iPIa~ 263 (393)
T 2og9_A 194 IARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWIEE-------P-LDAYDHEGHAALALQF--DTPIAT 263 (393)
T ss_dssp HHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEEC-------C-SCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC-------C-CCcccHHHHHHHHHhC--CCCEEe
Confidence 56788898886 47888873 3566665 4455678887741 1 1134678888888887 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
++.+.+..|+.++++.| +|.|++-
T Consensus 264 dE~~~~~~~~~~~i~~~~~d~v~ik 288 (393)
T 2og9_A 264 GEMLTSAAEHGDLIRHRAADYLMPD 288 (393)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred CCCcCCHHHHHHHHHCCCCCEEeeC
Confidence 99999999999999987 8999874
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.022 Score=53.85 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=87.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++-+.+++. +..
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~-------------------------------------------------~~~ 174 (379)
T 2rdx_A 144 RSEAETRAELARHRAAGYRQFQIKVGAD-------------------------------------------------WQS 174 (379)
T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccCC-------------------------------------------------HHH
Confidence 4677777778888889999988765420 112
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHHH----HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.|+.++. ..+.+++. .+.+.|+ .|. +. .+ .++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------~P--~~-~~~~~~~l~~~~--~iPI~ 241 (379)
T 2rdx_A 175 DIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-ILE-------QP--CR-SYEECQQVRRVA--DQPMK 241 (379)
T ss_dssp HHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EEE-------CC--SS-SHHHHHHHHTTC--CSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EEe-------CC--cC-CHHHHHHHHhhC--CCCEE
Confidence 356788888887 47888873 35666653 3345566 542 11 12 678888888776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccccccC
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPCQC 315 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~ 315 (323)
+++.+.+..|+.++++.| +|.|++-...+|.
T Consensus 242 ~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GG 273 (379)
T 2rdx_A 242 LDECVTGLHMAQRIVADRGAEICCLKISNLGG 273 (379)
T ss_dssp ECTTCCSHHHHHHHHHHTCCSEEEEETTTTTS
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEEeccccCC
Confidence 999999999999999987 9999997655543
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.031 Score=53.07 Aligned_cols=124 Identities=14% Similarity=0.037 Sum_probs=89.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.||+++-|.+... .+..
T Consensus 148 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~ 179 (391)
T 2qgy_A 148 KDTNDYLRQIEKFYGKKYGGIKIYPMLD------------------------------------------------SLSI 179 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCSCEEECCCCS------------------------------------------------SHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCCC------------------------------------------------hHHH
Confidence 4677777778888889999887653210 0123
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.+.. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||+
T Consensus 180 ~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPIa 249 (391)
T 2qgy_A 180 SIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWIEE-------P-VDGENISLLTEIKNTF--NMKVV 249 (391)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEEEC-------S-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEeC-------C-CChhhHHHHHHHHhhC--CCCEE
Confidence 456788899887 57888883 3566664 4555678887742 1 1134678888888887 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPCQ 314 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~~ 314 (323)
+++.+.+..++.++++.| +|.|++--..+|
T Consensus 250 ~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 280 (391)
T 2qgy_A 250 TGEKQSGLVHFRELISRNAADIFNPDISGMG 280 (391)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCBTTTSS
T ss_pred EcCCcCCHHHHHHHHHcCCCCEEEECcchhC
Confidence 999999999999999987 899998654444
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0076 Score=58.98 Aligned_cols=246 Identities=16% Similarity=0.170 Sum_probs=136.5
Q ss_pred hhcccccccccc-cCCCCCccceeecC-cccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~g-~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~- 118 (323)
.||++.|+|... .+..++++++.+-. ..+..||+.+||... . +..++.+..+.|....+... .+.++..
T Consensus 13 ~~~d~~~~p~~~~~~p~~v~~~t~lt~~l~~~~Piv~a~M~~v--t----~~eLa~av~~~Gg~G~i~~~--~~~e~~~~ 84 (491)
T 1zfj_A 13 TFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTV--T----GSKMAIAIARAGGLGVIHKN--MSITEQAE 84 (491)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTT--C----SHHHHHHHHHTTCEEEECCS--SCHHHHHH
T ss_pred ChhhEEeccCcCCcCccccccchhhhhcceecCceEecCchhc--c----HHHHHHHHHHcCCceEEeCC--CCHHHHHH
Confidence 599999999876 45578999988754 578899999999752 2 33677788888877666532 3443322
Q ss_pred ------hcCC--CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEec--C-CCCCC-chHHHHhhccCCCCccccccccc
Q 020636 119 ------STGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV--D-TPRLG-RREADIKNRFTLPPFLTLKNFQG 186 (323)
Q Consensus 119 ------~~~~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itv--d-~p~~g-~r~~d~~~~~~~~~~~~~~~~~~ 186 (323)
.... .+..+-+. ......+.++.+.+.++..+.|.= + --..| ...+|+.... .....+..
T Consensus 85 ~i~~v~~~~~im~~~~~~v~---~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~--~~~~~v~~--- 156 (491)
T 1zfj_A 85 EVRKVKRSENGVIIDPFFLT---PEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--DYNAPISE--- 156 (491)
T ss_dssp HHHHHHHHTTTTSSSCCCBC---SSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--CSSSBTTT---
T ss_pred HHHHHhhHHhcCcCCCeEEC---CCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--cCCCcHHH---
Confidence 1111 11111121 122345666777778888776532 1 01112 1334443210 00000100
Q ss_pred cccC-CC-c---cccchhhHHHHhhc-------cC------CccCHHH-HHHHHH-----hcCCCEEEecc-----CCHH
Q 020636 187 LDLG-KM-D---EANDSGLAAYVAGQ-------ID------RSLSWKD-VKWLQT-----ITKLPILVKGV-----LTAE 237 (323)
Q Consensus 187 ~~~~-~~-~---~~~~~~~~~~~~~~-------~~------~~~~~~~-i~~i~~-----~~~~pv~vK~i-----~~~e 237 (323)
+... +. . ...-....+.+... .| .-.+.++ ++.+.+ ....++.+.+. .+.+
T Consensus 157 im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~ 236 (491)
T 1zfj_A 157 HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFE 236 (491)
T ss_dssp SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHH
T ss_pred HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHH
Confidence 0000 00 0 00000001111000 00 1123444 333332 00122222221 2368
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 238 ~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.++.+.++|+|.|++...+|+ ....++.+.++++.++ .+|++ .|++.+.+++.+++.+|||+|.+|
T Consensus 237 ~a~~l~~~G~d~ivi~~a~g~----~~~~~~~i~~l~~~~p-~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg 302 (491)
T 1zfj_A 237 RAEALFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHFP-NRTLI-AGNIATAEGARALYDAGVDVVKVG 302 (491)
T ss_dssp HHHHHHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHCS-SSCEE-EEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHcCCCeEEEeeecCc----chhHHHHHHHHHHHCC-CCcEe-CCCccCHHHHHHHHHcCCCEEEEC
Confidence 899999999999999764442 1235677888887764 68998 899999999999999999999998
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.051 Score=48.51 Aligned_cols=126 Identities=14% Similarity=0.181 Sum_probs=83.4
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
|...+.+.+.+-++.++++|++++++.+=.+ |
T Consensus 67 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~------------------------------------------------d 98 (256)
T 1twd_A 67 YSDGEFAAILEDVRTVRELGFPGLVTGVLDV------------------------------------------------D 98 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 5444566777778889999999998754221 2
Q ss_pred CccCHHHHHHHHHhc-CCCEEEec----cCCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKG----VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~----i~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..++.+.++++.+.. +.|+.+.- +.++.. .+.+.+.|++.|-.|+... .....++.|+++.+... ++.|
T Consensus 99 g~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILTSG~~~----~a~~g~~~L~~Lv~~a~-~i~I 173 (256)
T 1twd_A 99 GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKS----DALQGLSKIMELIAHRD-APII 173 (256)
T ss_dssp SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSS----STTTTHHHHHHHHTSSS-CCEE
T ss_pred CCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCCC----CHHHHHHHHHHHHHhhC-CcEE
Confidence 334566666666554 56777662 344544 5678899999998765322 23345667777766545 7889
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++-|||+. +.+.+.+..|++.+=.+
T Consensus 174 m~GgGv~~-~Ni~~l~~tGv~e~H~S 198 (256)
T 1twd_A 174 MAGAGVRA-ENLHHFLDAGVLEVHSS 198 (256)
T ss_dssp EEESSCCT-TTHHHHHHHTCSEEEEC
T ss_pred EecCCcCH-HHHHHHHHcCCCeEeEC
Confidence 99899864 33444447898888755
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0088 Score=52.68 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=56.2
Q ss_pred HHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+++.++ ..+....+.+.++++.+.++|||+|+. + + .+.+.+ +..+.. .++++. |+.|++
T Consensus 66 ~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~----p-~-----~d~~v~-~~~~~~--g~~~i~--G~~t~~ 130 (225)
T 1mxs_A 66 KAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVT----P-G-----ITEDIL-EAGVDS--EIPLLP--GISTPS 130 (225)
T ss_dssp HHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEEC----S-S-----CCHHHH-HHHHHC--SSCEEC--EECSHH
T ss_pred HHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEe----C-C-----CCHHHH-HHHHHh--CCCEEE--eeCCHH
Confidence 45777777774 333344567889999999999999953 1 1 123333 333334 567765 499999
Q ss_pred HHHHHHHcCCCEEEE
Q 020636 294 DVFKALALGASGIFV 308 (323)
Q Consensus 294 di~kal~lGAd~V~i 308 (323)
++.+|+++|||.|.+
T Consensus 131 e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 131 EIMMGYALGYRRFKL 145 (225)
T ss_dssp HHHHHHTTTCCEEEE
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999988
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.074 Score=47.50 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=62.6
Q ss_pred CHHHHHHHHHhcCCCEEEecc-CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i-~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
+.++++.+|+.+++||+-|.- .+...+..+..+|||+|.+...- + ....+..+.+..+.+ .+.++++ ++|
T Consensus 89 s~~dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~---l--~~~~l~~l~~~a~~l--Gl~~lvE--v~~ 159 (251)
T 1i4n_A 89 DPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARI---L--TAEQIKEIYEAAEEL--GMDSLVE--VHS 159 (251)
T ss_dssp CTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGG---S--CHHHHHHHHHHHHTT--TCEEEEE--ECS
T ss_pred CHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEeccc---C--CHHHHHHHHHHHHHc--CCeEEEE--eCC
Confidence 356889999999999999953 34445666999999999875321 1 112333333333334 5667775 789
Q ss_pred HHHHHHHHHc-CCCEEEEcc
Q 020636 292 GTDVFKALAL-GASGIFVSI 310 (323)
Q Consensus 292 ~~di~kal~l-GAd~V~iG~ 310 (323)
.+++.+++.+ |++.|++-.
T Consensus 160 ~eE~~~A~~l~g~~iIGinn 179 (251)
T 1i4n_A 160 REDLEKVFSVIRPKIIGINT 179 (251)
T ss_dssp HHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEeC
Confidence 9999999999 999998853
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.013 Score=53.12 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.||++|.|-.-.+ .-..+++.|..+++.+ ++||+.-..|.+..++.++.++|||+|.++...+..
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~----~f~Gs~~~L~~ir~~v--~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~~ 155 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTP----SFQGAPEFLTAARQAC--SLPALRKDFLFDPYQVYEARSWGADCILIIMASVDD 155 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCST----TTCCCHHHHHHHHHTS--SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSCH
T ss_pred HHHHHHHHHCCCCEEEEecccc----ccCCCHHHHHHHHHhc--CCCEEECCccCCHHHHHHHHHcCCCEEEEcccccCH
Confidence 4568888999999998743111 0113567788888877 899999999999999999999999999999877643
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.015 Score=52.58 Aligned_cols=41 Identities=32% Similarity=0.404 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.++++|+.++.|+++. |+.++++++.+...|||+++|.
T Consensus 194 ~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVG 235 (267)
T 3vnd_A 194 IENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISG 235 (267)
T ss_dssp HHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 3567899999889999999 5678999999999999999994
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.2 Score=46.79 Aligned_cols=200 Identities=16% Similarity=0.197 Sum_probs=107.8
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecCCCCCCHHHH-Hhc---CC----CceeEEeee--cCChHHHHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEV-AST---GP----GIRFFQLYV--YKDRNVVAQ 140 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~s~~~~eei-~~~---~~----~~~~~QLy~--~~d~~~~~~ 140 (323)
.|++||.++..-....+--..++++|+++|.-++ ..++. .+.+ ... .. +...+.+|- .-..+....
T Consensus 19 ~~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k---~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~ 95 (349)
T 2wqp_A 19 EPLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHI---VEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIK 95 (349)
T ss_dssp CCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECC---HHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHH
T ss_pred ceEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecc---cccccCcchhccccCCCCccHHHHHHHhCCCHHHHHH
Confidence 4899998876322233334589999999998776 33332 2332 110 00 000001111 124667777
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc-cCHHHHHH
Q 020636 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKDVKW 219 (323)
Q Consensus 141 ~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ 219 (323)
+.+.+++.|...+.--.| .+.-|+-..+.++ .-.+. ..+ .++..|++
T Consensus 96 L~~~~~~~Gi~~~st~~d-----~~svd~l~~~~v~----~~KI~-----------------------S~~~~n~~LL~~ 143 (349)
T 2wqp_A 96 LKEYVESKGMIFISTLFS-----RAAALRLQRMDIP----AYKIG-----------------------SGECNNYPLIKL 143 (349)
T ss_dssp HHHHHHHTTCEEEEEECS-----HHHHHHHHHHTCS----CEEEC-----------------------GGGTTCHHHHHH
T ss_pred HHHHHHHhCCeEEEeeCC-----HHHHHHHHhcCCC----EEEEC-----------------------cccccCHHHHHH
Confidence 778888999765432121 1222322222111 00000 011 24667777
Q ss_pred HHHhcCCCEEEe-ccCCHHHHH----HHHHcCCCEEEEcCCCCCCCCCC--cchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 220 LQTITKLPILVK-GVLTAEDAR----IAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 220 i~~~~~~pv~vK-~i~~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
+.+ ++.||++| |..|.++.. .+.+.|.+.+.+ |+-+..... ...+..++.+++..+ .+||..++-=.-.
T Consensus 144 va~-~gkPviLstGmat~~Ei~~Ave~i~~~G~~iiLl--hc~s~Yp~~~~~~nL~ai~~lk~~f~-~lpVg~sdHt~G~ 219 (349)
T 2wqp_A 144 VAS-FGKPIILSTGMNSIESIKKSVEIIREAGVPYALL--HCTNIYPTPYEDVRLGGMNDLSEAFP-DAIIGLSDHTLDN 219 (349)
T ss_dssp HHT-TCSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEE--ECCCCSSCCGGGCCTHHHHHHHHHCT-TSEEEEECCSSSS
T ss_pred HHh-cCCeEEEECCCCCHHHHHHHHHHHHHcCCCEEEE--eccCCCCCChhhcCHHHHHHHHHHCC-CCCEEeCCCCCcH
Confidence 765 58999999 556777743 444678866655 332222111 224567777776652 4888766533335
Q ss_pred HHHHHHHHcCCCEEEEcccc
Q 020636 293 TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~ 312 (323)
.-.+.|+++||+ +|=+.|
T Consensus 220 ~~~~AAvAlGA~--iIEkH~ 237 (349)
T 2wqp_A 220 YACLGAVALGGS--ILERHF 237 (349)
T ss_dssp HHHHHHHHHTCC--EEEEEB
T ss_pred HHHHHHHHhCCC--EEEeCC
Confidence 556678899999 555544
|
| >1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.13 Score=45.34 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=62.7
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHH
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGT 293 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~ 293 (323)
++.+.+. ++++-+-.+.+.+.|..+.++|+++|.. +-||-.+.+.+....+.++...+ +-+..|++. ++|++.
T Consensus 106 i~~L~~e-GI~vNvTliFS~~QA~laa~AGa~~iSp--FVgRidd~g~dG~~~v~~i~~~~~~~~~~t~iL~A-S~r~~~ 181 (230)
T 1vpx_A 106 VKTLSAE-GIKTNVTLVFSPAQAILAAKAGATYVSP--FVGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIAA-SIRHPM 181 (230)
T ss_dssp HHHHHHT-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEEB-SCCSHH
T ss_pred HHHHHHC-CCCEEEEEeCCHHHHHHHHhCCCeEEEe--ccchhhhccccHHHHHHHHHHHHHHcCCCeEEEee-ccCCHH
Confidence 3444333 7888888999999999999999998765 33332223334455555555443 225566665 599999
Q ss_pred HHHHHHHcCCCEEEEcc
Q 020636 294 DVFKALALGASGIFVSI 310 (323)
Q Consensus 294 di~kal~lGAd~V~iG~ 310 (323)
++.++..+|||.+-+.-
T Consensus 182 ~v~~~~l~G~d~~Tip~ 198 (230)
T 1vpx_A 182 HVVEAALMGVDIVTMPF 198 (230)
T ss_dssp HHHHHHHHTCSEEEECH
T ss_pred HHHHHHHhCCCEEECCH
Confidence 99999999999977653
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.015 Score=54.76 Aligned_cols=68 Identities=18% Similarity=0.047 Sum_probs=53.0
Q ss_pred CHHHHHHHHHcCCCEEEEcC-CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.+.++.+.++|+|.|++.. ||. ....++.+..+++..+ ++||++ |+|.|.+++.++..+|||+|.+|
T Consensus 101 ~~e~~~~a~~aGvdvI~id~a~G~-----~~~~~e~I~~ir~~~~-~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 101 ELQRAEALRDAGADFFCVDVAHAH-----AKYVGKTLKSLRQLLG-SRCIMA-GNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCCS-----SHHHHHHHHHHHHHHT-TCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC-----cHhHHHHHHHHHHhcC-CCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence 35668899999999998853 432 1233567778877664 688887 77999999999999999999995
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.18 Score=47.18 Aligned_cols=238 Identities=18% Similarity=0.204 Sum_probs=125.4
Q ss_pred hcCCccchHHH-HHhHHhhcccccccccc-------cCCCCCccceeecCccc--ccceEECcccccccCCcHHHHHHHH
Q 020636 26 YASGAEDQWTL-QENRNAFSRILFRPRIL-------IDVSKIDMNTTVLGFKI--SMPIMIAPTAMQKMAHPEGEYATAR 95 (323)
Q Consensus 26 ~~~g~~~e~t~-~~N~~~~~~i~l~pr~l-------~~~~~~d~~t~i~g~~~--~~Pi~iaPm~~~~l~~~~~e~~~a~ 95 (323)
+-|-.+|+..+ ....+++.-+.=.-|+. +....-++.+++.+..+ ..|++||-.+. ..+.+.-..+++
T Consensus 50 ~ig~~g~~~~~~~~~~~~~~~v~~~~~i~~~~k~~sr~~~~~~~~i~i~~~~iG~~~~~vIAgpcs--~es~e~a~~~a~ 127 (350)
T 1vr6_A 50 VIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCS--VEGREMLMETAH 127 (350)
T ss_dssp EEEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTTEEEEEEECSB--CCCHHHHHHHHH
T ss_pred EEEEECCcCcCCHHHhhCCccceeeccCCCChhhhhhhcCCcCCEEEECCEEECCCCeEEEEeCCC--cCCHHHHHHHHH
Confidence 33444665554 34555555444333332 22333455555554333 13767664332 234455568999
Q ss_pred HHHHcCCceeec-CCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccC
Q 020636 96 AASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174 (323)
Q Consensus 96 aa~~~G~~~~vs-~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~ 174 (323)
+++++|.-++-. .+...+ . +..||= ...+....+.+.+++.|...+. ++-.+. .-++-..+
T Consensus 128 ~~k~aGa~~vr~q~fKprT-------s--~~~f~g---lg~egl~~l~~~~~e~Gl~~~t-e~~d~~----~~~~l~~~- 189 (350)
T 1vr6_A 128 FLSELGVKVLRGGAYKPRT-------S--PYSFQG---LGEKGLEYLREAADKYGMYVVT-EALGED----DLPKVAEY- 189 (350)
T ss_dssp HHHHTTCCEEECBSCCCCC-------S--TTSCCC---CTHHHHHHHHHHHHHHTCEEEE-ECSSGG----GHHHHHHH-
T ss_pred HHHHcCCCeeeeeEEeCCC-------C--hHhhcC---CCHHHHHHHHHHHHHcCCcEEE-EeCCHH----HHHHHHHh-
Confidence 999999877643 222111 1 122331 1244555555566778876543 321111 11111111
Q ss_pred CCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cC-CHHHHH----HHHHcCCC
Q 020636 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VL-TAEDAR----IAVQAGAA 248 (323)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~-~~e~a~----~~~~~Gad 248 (323)
++ +- ..+ + .-..+...++++. .++.||++|- .. +.++.. .+...|.+
T Consensus 190 vd----~l---kIg---------A----------r~~~n~~LL~~va-~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~ 242 (350)
T 1vr6_A 190 AD----II---QIG---------A----------RNAQNFRLLSKAG-SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNT 242 (350)
T ss_dssp CS----EE---EEC---------G----------GGTTCHHHHHHHH-TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCC
T ss_pred CC----EE---EEC---------c----------ccccCHHHHHHHH-ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCC
Confidence 00 00 000 0 0012355677776 4689999994 43 777744 34567887
Q ss_pred EEEEcCCCCCCCCC---CcchHHHHHHHHHHhcCCCeEEEec----CCCC--HHHHHHHHHcCCCEEEEcccc
Q 020636 249 GIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDG----GVRR--GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 249 ~i~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~~pvia~G----GI~~--~~di~kal~lGAd~V~iG~~~ 312 (323)
-+++.-||.+.... ....+..++.+++.. .+||+.+. |-+. ..-...|+++||++++|=+.+
T Consensus 243 ~viLceRG~~typ~~~~~~vdl~ai~~lk~~~--~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~ 313 (350)
T 1vr6_A 243 KIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHP 313 (350)
T ss_dssp CEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCS
T ss_pred eEEEEeCCCCCCCCcChhhhhHHHHHHHHHhh--CCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 78787666643321 223455677777765 68998843 4433 344566788999999998765
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.047 Score=51.96 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=85.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+++.+.+.++++.+.||+++=+.++.+ ++...
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~d 206 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQP------------------------------------------------NCAED 206 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS------------------------------------------------CHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCCC------------------------------------------------CHHHH
Confidence 677777777888889999887764321 11134
Q ss_pred HHHHHHHHHhc--CCCEEEe--ccCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTIT--KLPILVK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK--~i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+|+.+ +.++.+. +..+.+++ +.+.+.|++.|.- . ..+..++.+.++.+.+ ++||++
T Consensus 207 ~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPIa~ 276 (398)
T 2pp0_A 207 IRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEE-------P-LDAYDIEGHAQLAAAL--DTPIAT 276 (398)
T ss_dssp HHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCEEC-------C-SCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCceeeC-------C-CChhhHHHHHHHHhhC--CCCEEe
Confidence 56788888886 4788887 33566665 4455678877641 0 1223678888888887 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
++.+.+..|+.++++.| +|.|++-
T Consensus 277 dE~~~~~~~~~~~i~~~~~d~v~ik 301 (398)
T 2pp0_A 277 GEMLTSFREHEQLILGNASDFVQPD 301 (398)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred cCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 99999999999999987 8998874
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0078 Score=52.66 Aligned_cols=71 Identities=17% Similarity=0.093 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC-HHHHHHHHHcCCCEEEEccccccC
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~-~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+-++.+.++|+|+++++.+ ..+.+..+++.++ + .+++++||+- +.+..+++..|||.+.+||++...
T Consensus 119 ~~a~~a~~~G~~GvV~sat----------~~~e~~~ir~~~~-~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a 186 (215)
T 3ve9_A 119 YLREVARRVNPKGFVAPAT----------RPSMISRVKGDFP-D-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQS 186 (215)
T ss_dssp HHHHHHHHHCCSEEECCTT----------SHHHHHHHHHHCT-T-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTS
T ss_pred HHHHHHHHcCCCceeeCCC----------CHHHHHHHHHhCC-C-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCC
Confidence 4577788999999987531 2345666777665 4 6889999984 336778889999999999999887
Q ss_pred cchh
Q 020636 316 PLTE 319 (323)
Q Consensus 316 ~~~~ 319 (323)
++-.
T Consensus 187 ~dp~ 190 (215)
T 3ve9_A 187 ADPV 190 (215)
T ss_dssp SSHH
T ss_pred CCHH
Confidence 6543
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.076 Score=49.71 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.++++ ++..
T Consensus 139 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~ 170 (366)
T 1tkk_A 139 NSPEEMAADAENYLKQGFQTLKIKVGKD------------------------------------------------DIAT 170 (366)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSS------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeCCC------------------------------------------------CHHH
Confidence 4677777777777788999988765431 1112
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHH--cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCe
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~--~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~p 282 (323)
..+.++.+|+.+ +.++.+.. ..+.+++ +.+.+ .|++.|. +. ..+..++.+.++.+.+ ++|
T Consensus 171 d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ip 240 (366)
T 1tkk_A 171 DIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVE-------QP-VHKDDLAGLKKVTDAT--DTP 240 (366)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEE-------CC-SCTTCHHHHHHHHHHC--SSC
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEEE-------CC-CCcccHHHHHHHHhhC--CCC
Confidence 356788888877 46777773 3466664 45556 6666553 11 1234678888888877 799
Q ss_pred EEEecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 283 VFLDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 283 via~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
|++++.+.+..|+.+++..| +|.|++--..+
T Consensus 241 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 272 (366)
T 1tkk_A 241 IMADESVFTPRQAFEVLQTRSADLINIKLMKA 272 (366)
T ss_dssp EEECTTCCSHHHHHHHHHHTCCSEEEECHHHH
T ss_pred EEEcCCCCCHHHHHHHHHhCCCCEEEeehhhh
Confidence 99999999999999999876 99999854433
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.064 Score=50.94 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=84.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.||+++=+.++. ++..
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~vKik~g~-------------------------------------------------~~~~ 174 (397)
T 2qde_A 144 GEPEAVAEEALAVLREGFHFVKLKAGG-------------------------------------------------PLKA 174 (397)
T ss_dssp SCHHHHHHHHHHHHHHTCSCEEEECCS-------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHhhhhheeecccC-------------------------------------------------CHHH
Confidence 467777777778888899988776431 0112
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.+.. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||+
T Consensus 175 ~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~iPIa 244 (397)
T 2qde_A 175 DIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQ-------P-LPAWDLDGMARLRGKV--ATPIY 244 (397)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEEC-------C-SCTTCHHHHHHHHTTC--SSCEE
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEEEC-------C-CChhhHHHHHHHHhhC--CCCEE
Confidence 356788888886 47888773 3566665 4455678887641 1 1223577788887766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
+++.+.+..++.++++.| +|.|++-
T Consensus 245 ~dE~~~~~~~~~~~i~~~~~d~v~ik 270 (397)
T 2qde_A 245 ADESAQELHDLLAIINKGAADGLMIK 270 (397)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred EeCCcCCHHHHHHHHHcCCCCEEEEe
Confidence 999999999999999987 9999984
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0049 Score=52.66 Aligned_cols=140 Identities=13% Similarity=0.055 Sum_probs=82.5
Q ss_pred eeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHH
Q 020636 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (323)
Q Consensus 125 ~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
..|=++. +-..+.+.+++++++| +-++|++|.-. | ++ ......+++
T Consensus 34 ~ifll~g--~I~~L~~iv~~ik~~g-K~vivh~DlI~-G---------Ls---------------------~d~~ai~fL 79 (188)
T 1vkf_A 34 VVFLLKS--DILNLKFHLKILKDRG-KTVFVDMDFVN-G---------LG---------------------EGEEAILFV 79 (188)
T ss_dssp EEEECCE--ETTTHHHHHHHHHHTT-CEEEEEGGGEE-T---------CC---------------------SSHHHHHHH
T ss_pred EEEEEeC--cHHHHHHHHHHHHHCC-CeEEEecCccc-c---------cC---------------------CCHHHHHHH
Confidence 3444443 3344778888888886 56777877532 1 10 001112233
Q ss_pred hhccCCcc----CHHHHHHHHHhcCCCEEEecc----CC-HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH
Q 020636 205 AGQIDRSL----SWKDVKWLQTITKLPILVKGV----LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (323)
Q Consensus 205 ~~~~~~~~----~~~~i~~i~~~~~~pv~vK~i----~~-~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (323)
...+|+. ....++..++ .++..+-+.- .+ ...++.+.+...|.+.+- .+ +-..+.++++
T Consensus 80 -~~~~pdGIIsTk~~~i~~Akk-~GL~tIqR~FliDs~al~~~~~~I~~~kPD~iEiL-------Pg-~v~p~~I~~v-- 147 (188)
T 1vkf_A 80 -KKAGADGIITIKPKNYVVAKK-NGIPAVLRFFALDSKAVERGIEQIETLGVDVVEVL-------PG-AVAPKVARKI-- 147 (188)
T ss_dssp -HHHTCSEEEESCHHHHHHHHH-TTCCEEEEEECCSHHHHHHHHHHHHHHTCSEEEEE-------SG-GGHHHHHTTS--
T ss_pred -HhcCCCEEEcCcHHHHHHHHH-cCCEEeeEEEEEEeHHHhhhhhhccccCCCeEeec-------CC-CchHHHHHHh--
Confidence 3333432 1234555544 3655555532 12 233455667888988762 11 1123455444
Q ss_pred HhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 276 ATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 276 ~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
. ++|||+.|+|++.+|+.+ +.+||++|..|+.=++
T Consensus 148 -~--~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW 182 (188)
T 1vkf_A 148 -P--GRTVIAAGLVETEEEARE-ILKHVSAISTSSRILW 182 (188)
T ss_dssp -T--TSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHH
T ss_pred -c--CCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHh
Confidence 3 799999999999999999 9999999999985443
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.051 Score=50.89 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=63.1
Q ss_pred HHhcCCCceeEEeeecCC----hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCC
Q 020636 117 VASTGPGIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (323)
Q Consensus 117 i~~~~~~~~~~QLy~~~d----~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~ 192 (323)
+.+...-+..+.+....+ .+...+++++++++|++.|.++-..... ++. + .
T Consensus 121 v~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~---------g~~-g--------------~- 175 (350)
T 3b0p_A 121 MGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALL---------ALS-T--------------K- 175 (350)
T ss_dssp HHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC-------------------------------
T ss_pred HHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhc---------ccC-c--------------c-
Confidence 333334456665533222 2356778889999999999876321100 110 0 0
Q ss_pred ccccchhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 193 DEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
. ....+...|+.++.+++.+ ++||+.- ++.+.+++..+++ |||+|.+.
T Consensus 176 ----------~--~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 176 ----------A--NREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp ----------------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEEC
T ss_pred ----------c--ccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 0 0001345799999999998 8998876 5689999999998 99999883
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.78 Score=41.39 Aligned_cols=206 Identities=22% Similarity=0.313 Sum_probs=110.4
Q ss_pred CCccceeecCccc--ccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCCCCHHHHHhcCCCceeEEeeecCC
Q 020636 58 KIDMNTTVLGFKI--SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTSSVEEVASTGPGIRFFQLYVYKD 134 (323)
Q Consensus 58 ~~d~~t~i~g~~~--~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~~~~eei~~~~~~~~~~QLy~~~d 134 (323)
.-++.+++.+..+ ..|++||-.+ ...+.+.-..++++++++|.-++-. .+...+ .+ ..||- ..
T Consensus 22 ~~~~~i~i~~~~iG~~~~~vIAgpc--~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprt-------s~--~~f~g---~g 87 (276)
T 1vs1_A 22 RRETVVEVEGVRIGGGSKAVIAGPC--SVESWEQVREAALAVKEAGAHMLRGGAFKPRT-------SP--YSFQG---LG 87 (276)
T ss_dssp CSCCCEEETTEEEBTTBCEEEEECS--BCCCHHHHHHHHHHHHHHTCSEEECBSSCCCS-------ST--TSCCC---CT
T ss_pred CCCcEEEECCEEECCCCeEEEEecC--CCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCC-------Ch--hhhcC---CC
Confidence 3455555554333 1377777543 2233444568999999999877643 222111 11 11231 12
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCH
Q 020636 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (323)
Q Consensus 135 ~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
.+....+.+.+++.|...+. ++-.+. .-++-..+ ++ +-. .+ + .-..+.
T Consensus 88 ~~gl~~l~~~~~~~Gl~~~t-e~~d~~----~~~~l~~~-vd----~~k---Ig---------s----------~~~~n~ 135 (276)
T 1vs1_A 88 LEGLKLLRRAGDEAGLPVVT-EVLDPR----HVETVSRY-AD----MLQ---IG---------A----------RNMQNF 135 (276)
T ss_dssp HHHHHHHHHHHHHHTCCEEE-ECCCGG----GHHHHHHH-CS----EEE---EC---------G----------GGTTCH
T ss_pred HHHHHHHHHHHHHcCCcEEE-ecCCHH----HHHHHHHh-CC----eEE---EC---------c----------ccccCH
Confidence 45555555566778876554 221111 11111111 00 000 00 0 001235
Q ss_pred HHHHHHHHhcCCCEEEec-cC-CHHHHHH----HHHcCCCEEEEcCCCCCCCC---CCcchHHHHHHHHHHhcCCCeEEE
Q 020636 215 KDVKWLQTITKLPILVKG-VL-TAEDARI----AVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~-i~-~~e~a~~----~~~~Gad~i~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
..++.+.+ ++.||++|. .. +.++... +...|.+-+++.-+|.+... .....+..++.+++.. .+||++
T Consensus 136 ~ll~~~a~-~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~--~lpVi~ 212 (276)
T 1vs1_A 136 PLLREVGR-SGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEAT--HLPVIV 212 (276)
T ss_dssp HHHHHHHH-HTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHB--SSCEEE
T ss_pred HHHHHHHc-cCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHh--CCCEEE
Confidence 55666654 689999994 43 7777544 44678866666444554321 1233566777777765 689987
Q ss_pred ec----CCCC--HHHHHHHHHcCCCEEEEcccc
Q 020636 286 DG----GVRR--GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 286 ~G----GI~~--~~di~kal~lGAd~V~iG~~~ 312 (323)
+. |.+. ..-.+.++++||++++|=+.+
T Consensus 213 dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~ 245 (276)
T 1vs1_A 213 DPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP 245 (276)
T ss_dssp CCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred eCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 43 4443 344666788999999998876
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.056 Score=49.61 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=56.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 43 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 122 (304)
T 3cpr_A 43 AAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYY 122 (304)
T ss_dssp HHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45677899999999887764322111 123456666666777899998666656666554 3348999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 123 ~~~~~~~l 130 (304)
T 3cpr_A 123 SKPSQEGL 130 (304)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.76 Score=43.41 Aligned_cols=209 Identities=11% Similarity=0.118 Sum_probs=109.4
Q ss_pred eecCccc---ccceEECcccccccCCcHHHHHHHHHHHHcCCcee-ecCCCCCCHHHH-HhcC-----C---CceeEEee
Q 020636 64 TVLGFKI---SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWSTSSVEEV-ASTG-----P---GIRFFQLY 130 (323)
Q Consensus 64 ~i~g~~~---~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~-vs~~s~~~~eei-~~~~-----~---~~~~~QLy 130 (323)
+|.++.+ ..|++||=+|..--+..+--..++++|+++|.-++ ..++.. +.+ .... + +...+++|
T Consensus 17 ~~~~~~ig~~~~~~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~---~tl~s~~~~~fq~~~~~~~~~ye~~ 93 (385)
T 1vli_A 17 QIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQA---DRMYQKDPGLYKTAAGKDVSIFSLV 93 (385)
T ss_dssp EETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCG---GGGTSCCC---------CCCHHHHG
T ss_pred eECCEEeCCCCCcEEEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeecc---CcccCcchhhhccCCCCCccHHHHH
Confidence 4444444 35899998765321222223589999999998776 333321 221 0000 0 00000112
Q ss_pred e--cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhcc
Q 020636 131 V--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (323)
Q Consensus 131 ~--~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (323)
- .-..+....+.+.+++.|...+. +|. ..+.-|+-..+.+| .-.+.
T Consensus 94 ~~~~l~~e~~~~L~~~~~~~Gi~~~s----tpf-D~~svd~l~~~~vd----~~KIg----------------------- 141 (385)
T 1vli_A 94 QSMEMPAEWILPLLDYCREKQVIFLS----TVC-DEGSADLLQSTSPS----AFKIA----------------------- 141 (385)
T ss_dssp GGBSSCGGGHHHHHHHHHHTTCEEEC----BCC-SHHHHHHHHTTCCS----CEEEC-----------------------
T ss_pred HhcCCCHHHHHHHHHHHHHcCCcEEE----ccC-CHHHHHHHHhcCCC----EEEEC-----------------------
Confidence 1 12456667777888899975432 222 22333333222211 00000
Q ss_pred CCc-cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHH----HHHcCCCEEEEcCCCCCCCCCC--cchHHHHHHHHHHhcCC
Q 020636 209 DRS-LSWKDVKWLQTITKLPILVK-GVLTAEDARI----AVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGR 280 (323)
Q Consensus 209 ~~~-~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~----~~~~Gad~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~ 280 (323)
..+ .++..|+++.+ ++.||++| |..|.++... +.+.|.+-|++. |+-+..... ...+..++.+++..+ .
T Consensus 142 S~~~~N~pLL~~va~-~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLl-hc~s~YPtp~~~~nL~aI~~Lk~~f~-~ 218 (385)
T 1vli_A 142 SYEINHLPLLKYVAR-LNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIM-HCVAKYPAPPEYSNLSVIPMLAAAFP-E 218 (385)
T ss_dssp GGGTTCHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEE-EECSSSSCCGGGCCTTHHHHHHHHST-T
T ss_pred cccccCHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE-eccCCCCCChhhcCHHHHHHHHHHcC-C
Confidence 011 24667777765 58999999 5567777443 346787445442 222211111 123556777766642 4
Q ss_pred CeEEEecCCCC-HHHHHHHHHcCCCEEEEcccc
Q 020636 281 IPVFLDGGVRR-GTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 281 ~pvia~GGI~~-~~di~kal~lGAd~V~iG~~~ 312 (323)
+||..++--.- ..-.+.|+++||+ +|=+.|
T Consensus 219 lpVG~SdHt~G~~~~~~AAvAlGA~--iIEkHf 249 (385)
T 1vli_A 219 AVIGFSDHSEHPTEAPCAAVRLGAK--LIEKHF 249 (385)
T ss_dssp SEEEEEECCSSSSHHHHHHHHTTCS--EEEEEB
T ss_pred CCEEeCCCCCCchHHHHHHHHcCCC--EEEeCC
Confidence 78876653333 5566678899999 555544
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.064 Score=51.71 Aligned_cols=131 Identities=18% Similarity=0.166 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.+++|.... .+. .+ . ..+.+.
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~------~G~----------------~~-------~-------~~~~~~ 188 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLR------GGH----------------MP-------A-------MTDISL 188 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTT------CCB----------------CC-------C-------HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccc------cCC----------------Cc-------c-------hhhHHH
Confidence 46777777778888899999988877653100 000 00 0 001223
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.+|.+.. ..+.++| +.+.+.|++.|.-- ..+..++.+.++++.+ ++||+
T Consensus 189 d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~i~~iEeP--------~~~~~~~~~~~l~~~~--~iPIa 258 (433)
T 3rcy_A 189 SVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYSPLWYEEP--------VPPDNVGAMAQVARAV--RIPVA 258 (433)
T ss_dssp HHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHS--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcCCCEEECC--------CChhhHHHHHHHHhcc--CCCEE
Confidence 466789999987 46777763 3567665 44556788877421 1123578888888887 89999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
+++.+.+..|+.++++.| +|.|++-
T Consensus 259 ~dE~~~~~~~~~~~l~~g~~D~v~~d 284 (433)
T 3rcy_A 259 TGERLTTKAEFAPVLREGAAAILQPA 284 (433)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred ecCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999987 8988874
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.023 Score=51.64 Aligned_cols=74 Identities=27% Similarity=0.272 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-------------HHHHHHH
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-------------TDVFKAL 299 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-------------~di~kal 299 (323)
+.+.+++..+.+.|||.|-+...- ...+..|+...+..+++.+ ++||.+.=--|.+ .|+..+.
T Consensus 46 ~~s~~~a~~A~~gGAdRIELc~~l--~~GGlTPS~g~i~~a~~~~--~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~ 121 (287)
T 3iwp_A 46 VDSVESAVNAERGGADRIELCSGL--SEGGTTPSMGVLQVVKQSV--QIPVFVMIRPRGGDFLYSDREIEVMKADIRLAK 121 (287)
T ss_dssp ESSHHHHHHHHHHTCSEEEECBCG--GGTCBCCCHHHHHHHHTTC--CSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHhCCCEEEECCCC--CCCCCCCCHHHHHHHHHhc--CCCeEEEEecCCCCcccCHHHHHHHHHHHHHHH
Confidence 379999999999999999986421 1122346778888887766 7999885444444 7999999
Q ss_pred HcCCCEEEEcc
Q 020636 300 ALGASGIFVSI 310 (323)
Q Consensus 300 ~lGAd~V~iG~ 310 (323)
++|||+|.+|-
T Consensus 122 ~~GAdGvVfG~ 132 (287)
T 3iwp_A 122 LYGADGLVFGA 132 (287)
T ss_dssp HTTCSEEEECC
T ss_pred HcCCCEEEEee
Confidence 99999999993
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.043 Score=47.22 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=78.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+...+.++.+.+.|++.+-++...+
T Consensus 15 ~~d~~~~~~~~~~~~~~G~~~i~l~~~~~--------------------------------------------------- 43 (212)
T 2v82_A 15 GITPDEALAHVGAVIDAGFDAVEIPLNSP--------------------------------------------------- 43 (212)
T ss_dssp TCCHHHHHHHHHHHHHHTCCEEEEETTST---------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCh---------------------------------------------------
Confidence 56777778888888899999887653211
Q ss_pred cCHHHHHHHHHhcCCCEEEe--ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 212 LSWKDVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK--~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
...+.++.+++.++.|++++ .+.+.+.+..+.++|+|+|.+.. ...+.+.. .+.. ..+++.. +
T Consensus 44 ~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~----------~~~~~~~~-~~~~--g~~~~~g--~ 108 (212)
T 2v82_A 44 QWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPN----------IHSEVIRR-AVGY--GMTVCPG--C 108 (212)
T ss_dssp THHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSS----------CCHHHHHH-HHHT--TCEEECE--E
T ss_pred hHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCC----------CCHHHHHH-HHHc--CCCEEee--c
Confidence 01346677777778888884 45778899999999999996321 12333333 3334 4566543 8
Q ss_pred CCHHHHHHHHHcCCCEEEE
Q 020636 290 RRGTDVFKALALGASGIFV 308 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~i 308 (323)
.|..++.++..+|+|.|.+
T Consensus 109 ~t~~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 109 ATATEAFTALEAGAQALKI 127 (212)
T ss_dssp CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999999987
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=95.91 E-value=0.066 Score=50.46 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++-+.++++. +..
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~------------------------------------------------~~~ 175 (378)
T 2qdd_A 144 GTPDQMLGLIAEAAAQGYRTHSAKIGGSD------------------------------------------------PAQ 175 (378)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSSC------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHHhhhheeecCCCCC------------------------------------------------hHH
Confidence 56777777788888889999887765420 112
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHHHHHHH---cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDARIAVQ---AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a~~~~~---~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
..+.++.+|+.+ +.++.+.. ..+.+++....+ .|+ .|. +. .+ .++.+.++++.+ ++||++
T Consensus 176 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~i-~iE-------qP--~~-d~~~~~~l~~~~--~iPI~~ 242 (378)
T 2qdd_A 176 DIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD-WIE-------QP--CQ-TLDQCAHVARRV--ANPIML 242 (378)
T ss_dssp HHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCCCCC-EEE-------CC--SS-SHHHHHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhCCCc-EEE-------cC--CC-CHHHHHHHHHhC--CCCEEE
Confidence 356788888877 47787773 357777655432 344 331 11 12 778888888766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEccccccC
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIMPCQC 315 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~ 315 (323)
++.+.+..|+.++++.| +|.|++-...+|.
T Consensus 243 dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 273 (378)
T 2qdd_A 243 DECLHEFSDHLAAWSRGACEGVKIKPNRVGG 273 (378)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEEEECHHHHTS
T ss_pred CCCcCCHHHHHHHHHhCCCCEEEecccccCC
Confidence 99999999999999876 9999996555443
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.082 Score=49.56 Aligned_cols=123 Identities=17% Similarity=0.259 Sum_probs=86.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++-+.++. ++..
T Consensus 140 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-------------------------------------------------~~~~ 170 (369)
T 2p8b_A 140 ADPENMAEEAASMIQKGYQSFKMKVGT-------------------------------------------------NVKE 170 (369)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCS-------------------------------------------------CHHH
T ss_pred CChHHHHHHHHHHHHcCcCEEEEEeCC-------------------------------------------------CHHH
Confidence 467777777788888999998876532 0112
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHHH-HH----HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDAR-IA----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a~-~~----~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..+.++.+|+.+ +.++.+.. ..+.+++. .. .+.|++.|. +. ..+..++.+.++++.+ ++||
T Consensus 171 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPI 240 (369)
T 2p8b_A 171 DVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWIE-------QP-VIADDIDAMAHIRSKT--DLPL 240 (369)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCEE-------CC-BCTTCHHHHHHHHHTC--CSCE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE-------CC-CCcccHHHHHHHHHhC--CCCE
Confidence 356788888887 47777773 24556655 33 345666553 11 1234577888888877 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMPCQ 314 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~ 314 (323)
++++.+.+..++.+++..| +|.|++--.-+|
T Consensus 241 ~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 272 (369)
T 2p8b_A 241 MIDEGLKSSREMRQIIKLEAADKVNIKLMKCG 272 (369)
T ss_dssp EESTTCCSHHHHHHHHHHTCCSEEEECHHHHT
T ss_pred EeCCCCCCHHHHHHHHHhCCCCEEEeecchhC
Confidence 9999999999999999986 999999644433
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.18 Score=48.75 Aligned_cols=87 Identities=21% Similarity=0.247 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.++++.+|+.+++||+-|. +.+......+..+|||+|-+...- ++ ...+..+.+..+.+ .+.++++ ++|.
T Consensus 97 ~~dL~~vr~~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~---l~--~~~l~~l~~~a~~l--gm~~LvE--vh~~ 167 (452)
T 1pii_A 97 FNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSV---LD--DDQYRQLAAVAHSL--EMGVLTE--VSNE 167 (452)
T ss_dssp TTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTT---CC--HHHHHHHHHHHHHT--TCEEEEE--ECSH
T ss_pred HHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEccc---CC--HHHHHHHHHHHHHc--CCeEEEE--eCCH
Confidence 5578889999999999996 345556777999999999875321 11 22344444444445 6777776 8999
Q ss_pred HHHHHHHHcCCCEEEEc
Q 020636 293 TDVFKALALGASGIFVS 309 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG 309 (323)
+++.+|+.+|++.+++-
T Consensus 168 eE~~~A~~lga~iIGin 184 (452)
T 1pii_A 168 EEQERAIALGAKVVGIN 184 (452)
T ss_dssp HHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHCCCCEEEEe
Confidence 99999999999999885
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.037 Score=50.51 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=57.1
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|-.+-.+.++ |-.+|||++++-.++.
T Consensus 29 v~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 108 (292)
T 3daq_A 29 VNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYY 108 (292)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 44567899999999877664211111 123456666666677899999666666777664 3447999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 109 ~~~~~~~l 116 (292)
T 3daq_A 109 NKTNQRGL 116 (292)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.17 Score=47.98 Aligned_cols=129 Identities=16% Similarity=0.071 Sum_probs=91.1
Q ss_pred CChHHHHHHH-HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 133 KDRNVVAQLV-RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 133 ~d~~~~~~~~-~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
.+++.+.+.+ +++.+.|++++=+.++.+... . ..++.
T Consensus 138 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~----------------~--------------------------~~~~~ 175 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAEQPAAVKIRWDGDRTR----------------C--------------------------DVDIP 175 (393)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC----------------C--------------------------SCCHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc----------------c--------------------------ccCHH
Confidence 4567666666 777778999998877653210 0 00222
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
.+.+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|++.|.- . ..+..++.+.++++.+ ++||
T Consensus 176 ~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPI 245 (393)
T 4dwd_A 176 GDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYSWFEE-------P-VQHYHVGAMGEVAQRL--DITV 245 (393)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCSEEEC-------C-SCTTCHHHHHHHHHHC--SSEE
T ss_pred HHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC-------C-CCcccHHHHHHHHhhC--CCCE
Confidence 3466788999987 57888873 3566664 5566788888852 1 1123577888888877 8999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.+++.+.+..|+.++++.|+|.|++--..+
T Consensus 246 a~dE~~~~~~~~~~~i~~~~d~v~~k~~~~ 275 (393)
T 4dwd_A 246 SAGEQTYTLQALKDLILSGVRMVQPDIVKM 275 (393)
T ss_dssp EBCTTCCSHHHHHHHHHHTCCEECCCTTTT
T ss_pred EecCCcCCHHHHHHHHHcCCCEEEeCcccc
Confidence 999999999999999998899998854433
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=95.88 E-value=0.048 Score=49.05 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
..+.++++|+..+.||.+. |+.+++++..+..+|||+++|..
T Consensus 193 ~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 193 LHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp CHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 4678899999889999998 46779999999999999999943
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.036 Score=52.39 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=85.6
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+++.+.+.++++.+.|++++-+.+++. +.
T Consensus 143 ~~~~e~~~~~a~~~~~~G~~~iKiK~G~~-------------------------------------------------~~ 173 (378)
T 3eez_A 143 AKSVEETRAVIDRYRQRGYVAHSVKIGGD-------------------------------------------------VE 173 (378)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCSC-------------------------------------------------HH
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEeccCCC-------------------------------------------------HH
Confidence 35777777777888889999988776541 11
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHHHH----HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a~~----~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.++.+.. ..+.++|.. +.+.|+ .|. + ..+.++.+.++++.+ ++||
T Consensus 174 ~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------q---P~~~~~~~~~l~~~~--~iPI 240 (378)
T 3eez_A 174 RDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MFE-------Q---PGETLDDIAAIRPLH--SAPV 240 (378)
T ss_dssp HHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CEE-------C---CSSSHHHHHHTGGGC--CCCE
T ss_pred HHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EEe-------c---CCCCHHHHHHHHhhC--CCCE
Confidence 2345678888877 46777773 356666543 345565 442 1 112567777777766 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMPCQ 314 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~ 314 (323)
++++.+.+..|+.++++.| +|.|++....+|
T Consensus 241 a~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~G 272 (378)
T 3eez_A 241 SVDECLVTLQDAARVARDGLAEVFGIKLNRVG 272 (378)
T ss_dssp EECTTCCSHHHHHHHHHTTCCSEEEEEHHHHT
T ss_pred EECCCCCCHHHHHHHHHcCCCCEEEeCchhcC
Confidence 9999999999999999987 899999765554
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.088 Score=50.39 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.++.... + +. .+...
T Consensus 178 ~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~-----d----------------------------g~---------~~~~~ 215 (412)
T 3stp_A 178 GSIEAMQKEAEEAMKGGYKAFKSRFGYGPK-----D----------------------------GM---------PGMRE 215 (412)
T ss_dssp CCHHHHHHHHHHHHTTTCSEEEEECCCCGG-----G----------------------------HH---------HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCcc-----c----------------------------cc---------chHHH
Confidence 467777778888888999999887654210 0 00 01123
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.+|.+.. ..+.++| +.+.+.|++.|.-- ..+..++.+.++++.+ ++||+
T Consensus 216 die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPIa 285 (412)
T 3stp_A 216 NLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPRWLEEP--------VIADDVAGYAELNAMN--IVPIS 285 (412)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhCC--CCCEE
Confidence 567789999987 46788873 3567665 45556788887421 1123578888888876 89999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
+++.+.+..|+.++++.| +|.|++--..
T Consensus 286 ~dE~~~~~~~~~~li~~~a~D~v~ik~~~ 314 (412)
T 3stp_A 286 GGEHEFSVIGCAELINRKAVSVLQYDTNR 314 (412)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCHHH
T ss_pred eCCCCCCHHHHHHHHHcCCCCEEecChhh
Confidence 999999999999999987 8998875433
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.75 Score=41.68 Aligned_cols=187 Identities=14% Similarity=0.169 Sum_probs=108.7
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hc-CC-CceeEEeeecCChHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (323)
|.++.|+ -.+-.+.++-..+++-.-+.|+...+ + ++.+.+.||-. +. .+ -+.+...- ..+-...
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 84 (292)
T 2vc6_A 7 TALVTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAG-SNSTAEA 84 (292)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHH
Confidence 4556666 33323444555777777788875543 2 23445665532 22 22 35566654 2355666
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
.++.+.++++|++++.+.. |..-. | ...+ ..+..+
T Consensus 85 i~la~~A~~~Gadavlv~~--P~y~~-----------~-------------------s~~~-------------l~~~f~ 119 (292)
T 2vc6_A 85 IAFVRHAQNAGADGVLIVS--PYYNK-----------P-------------------TQEG-------------IYQHFK 119 (292)
T ss_dssp HHHHHHHHHTTCSEEEEEC--CCSSC-----------C-------------------CHHH-------------HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcC--CCCCC-----------C-------------------CHHH-------------HHHHHH
Confidence 7788999999999998652 43100 0 0011 123455
Q ss_pred HHHHhcCCCEEEec------c-CCHHHHHHHHH-cC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 219 WLQTITKLPILVKG------V-LTAEDARIAVQ-AG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 219 ~i~~~~~~pv~vK~------i-~~~e~a~~~~~-~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
.+.+.+++|+++=. + .+++...++.+ .. +-+|.-+. .++..+.++.+..+++..|+ +|
T Consensus 120 ~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK~s~----------gd~~~~~~~~~~~~~~f~v~-~G-- 186 (292)
T 2vc6_A 120 AIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDAT----------GNLLRPSLERMACGEDFNLL-TG-- 186 (292)
T ss_dssp HHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS----------CCTHHHHHHHHHSCTTSEEE-ES--
T ss_pred HHHHhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEEecCC----------CCHHHHHHHHHHcCCCEEEE-EC--
Confidence 67777899999853 2 67888877766 42 32332221 12344555665555466665 55
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+-.-++.++.+||++++-+..-+....+.+
T Consensus 187 -~d~~~~~~l~~G~~G~is~~~n~~P~~~~~ 216 (292)
T 2vc6_A 187 -EDGTALGYMAHGGHGCISVTANVAPALCAD 216 (292)
T ss_dssp -CGGGHHHHHHTTCCEEEESGGGTCHHHHHH
T ss_pred -chHHHHHHHHcCCCEEEecHHHhCHHHHHH
Confidence 234577889999999999877655554444
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.2 Score=47.30 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=67.9
Q ss_pred CHHHHHHHHHhcC--CCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.++ .++.+.. ..+.++| +.+.+.|++.|. +. ..+..++.+.++++.+ ++||.
T Consensus 180 d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa 249 (383)
T 3i4k_A 180 DTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELFE-------QP-TPADDLETLREITRRT--NVSVM 249 (383)
T ss_dssp HHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEE-------SC-SCTTCHHHHHHHHHHH--CCEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CChhhHHHHHHHHhhC--CCCEE
Confidence 3567888998873 6787773 3566664 556678988875 11 1123577788888887 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
+++.+.+..|+.++++.| +|.|++--..+
T Consensus 250 ~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~ 279 (383)
T 3i4k_A 250 ADESVWTPAEALAVVKAQAADVIALKTTKH 279 (383)
T ss_dssp ESTTCSSHHHHHHHHHHTCCSEEEECTTTT
T ss_pred ecCccCCHHHHHHHHHcCCCCEEEEccccc
Confidence 999999999999999987 89999865444
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.047 Score=49.75 Aligned_cols=83 Identities=16% Similarity=0.294 Sum_probs=56.5
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 28 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (291)
T 3tak_A 28 VEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYY 107 (291)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 34567899999999877664211111 123456666666777899999666666677664 4458999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 108 ~~~~~~~l 115 (291)
T 3tak_A 108 NKPTQEGL 115 (291)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765443
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.051 Score=49.87 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++. -.+|||+|++-.++.
T Consensus 42 v~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 121 (304)
T 3l21_A 42 ANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYY 121 (304)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45567899999999877664211111 1234566666777778999996666666766643 347999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 122 ~~~s~~~l 129 (304)
T 3l21_A 122 SKPPQRGL 129 (304)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.053 Score=49.60 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=56.4
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 34 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 113 (297)
T 3flu_A 34 IDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYY 113 (297)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 34567899999999877664211111 123456666666777899999666556666654 3348999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 114 ~~~~~~~l 121 (297)
T 3flu_A 114 NKPSQEGI 121 (297)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765443
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.039 Score=49.25 Aligned_cols=74 Identities=23% Similarity=0.259 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE-----ecCCCCH--------HHHHHHH
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-----DGGVRRG--------TDVFKAL 299 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia-----~GGI~~~--------~di~kal 299 (323)
+.+.++|..|.+.|||.|.+...- ...|..|++..+..+++.+ ++||.+ .|++... .|+..+.
T Consensus 8 ~~s~~~a~~A~~~GAdRIELc~~L--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~ 83 (256)
T 1twd_A 8 CYSMECALTAQQNGADRVELCAAP--KEGGLTPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVR 83 (256)
T ss_dssp ESSHHHHHHHHHTTCSEEEECBCG--GGTCBCCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEEcCCc--ccCCCCCCHHHHHHHHHHc--CCceEEEECCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 378999999999999999986531 1122357788888888877 799888 4556554 3777888
Q ss_pred HcCCCEEEEcc
Q 020636 300 ALGASGIFVSI 310 (323)
Q Consensus 300 ~lGAd~V~iG~ 310 (323)
.+|||+|.+|-
T Consensus 84 ~~GadGvV~G~ 94 (256)
T 1twd_A 84 ELGFPGLVTGV 94 (256)
T ss_dssp HTTCSEEEECC
T ss_pred HcCCCEEEEee
Confidence 89999999994
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.028 Score=55.09 Aligned_cols=252 Identities=16% Similarity=0.179 Sum_probs=108.7
Q ss_pred hhccccccccccc-CCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|.... ..+++|++|.+- ++++..|++.|||... .+..+|.+.++.|...+++. ..+.++.++
T Consensus 11 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~M~tV------Te~~lA~ala~~GGiGvI~~--~~~~e~~a~ 82 (490)
T 4avf_A 11 TFDDVLLIPGYSEVLPKDVSLKTRLTRGIELNIPLVSAAMDTV------TEARLAIAMAQEGGIGIIHK--NMGIEQQAA 82 (490)
T ss_dssp CGGGEEECCCCBCSCGGGSCCCEEEETTEEESSSEEECSCTTT------CSHHHHHHHHHHTSEEEECC--SSCHHHHHH
T ss_pred CcceEEEeCCCCcccccceeeecccccCcccCCCccccchhhh------CHHHHHHHHHHcCCCccccC--CCCHHHHHH
Confidence 3999999997653 345789999885 6789999999999653 34578888888887777763 334444322
Q ss_pred c------CCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCC-chHHHHhhccCCCCccccccccccccCCC
Q 020636 120 T------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (323)
Q Consensus 120 ~------~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g-~r~~d~~~~~~~~~~~~~~~~~~~~~~~~ 192 (323)
. ......-.+..-.....+.+.++...+.++..+.|.=+.-..| ...+|++.... ....+..+..-...+.
T Consensus 83 ~v~~vk~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~~--~~~~V~~vMtp~~~~v 160 (490)
T 4avf_A 83 EVRKVKKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKPN--AGDTVAAIMTPKDKLV 160 (490)
T ss_dssp HHHHHHHCCC----------------------------------------------------------------------
T ss_pred HhhhhcccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhccc--cCCcHHHHhccCCCCE
Confidence 1 1111111111111223334555555666665554321111112 12334431100 0000000000000000
Q ss_pred ccccchhhHH---H-----------Hhhc--cCCccCHHHHHHHHHh------cCCCEEEe---cc--CCHHHHHHHHHc
Q 020636 193 DEANDSGLAA---Y-----------VAGQ--IDRSLSWKDVKWLQTI------TKLPILVK---GV--LTAEDARIAVQA 245 (323)
Q Consensus 193 ~~~~~~~~~~---~-----------~~~~--~~~~~~~~~i~~i~~~------~~~pv~vK---~i--~~~e~a~~~~~~ 245 (323)
.-.....+.+ . +... .-.-.+.+++.+..+. ....+.+. +. .+.+.++.+.++
T Consensus 161 tv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~a 240 (490)
T 4avf_A 161 TAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVAA 240 (490)
T ss_dssp ----------------------------------------------CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHT
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccCcchhhhccCcceeeeeeccccchHHHHHHHhhc
Confidence 0000000000 0 0000 0001122232222111 01112221 11 346789999999
Q ss_pred CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 246 Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
|+|.|++....+. .....+.+.++++..+ ++||++ |++.+.+++.++..+|||+|.+|
T Consensus 241 G~d~I~id~a~g~----~~~~~~~v~~i~~~~p-~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 241 GVDVVVVDTAHGH----SKGVIERVRWVKQTFP-DVQVIG-GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp TCSEEEEECSCCS----BHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred ccceEEecccCCc----chhHHHHHHHHHHHCC-CceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence 9999998543221 2345678888888764 688888 78999999999999999999985
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.056 Score=49.51 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=55.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 118 (301)
T 1xky_A 39 VNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY 118 (301)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 45567899999999877664211111 123456666666777899998666555566554 3348999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 119 ~~~s~~~l 126 (301)
T 1xky_A 119 NKPSQEGM 126 (301)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.029 Score=55.23 Aligned_cols=246 Identities=15% Similarity=0.189 Sum_probs=112.4
Q ss_pred hhcccccccccc-cCCCCCccceee-cCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i-~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|..- +..+++|++|.+ -++++..||+.|||--. +|..||.+.++.|...++.- +.++|+-++
T Consensus 61 TfDDVlLvP~~s~v~p~~Vdl~t~lt~~i~L~iPlvSA~MDTV------Te~~MAIamAr~GGiGvIH~--n~sie~Qa~ 132 (556)
T 4af0_A 61 TYNDFLVLPGHINFPASDVSLQSKATKNIVLNTPFLSSPMDTV------TEDRMAIALALHGGLGIIHH--NCSAEEQAA 132 (556)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEEEETTEEESSCEEECCCTTT------CSHHHHHHHHHTTCEEEECC--SSCHHHHHH
T ss_pred ChhhEEEccCCCCCCcccceeeeeccCCcEeCCCEEecCcccc------cCHHHHHHHHHCCCeEEEcC--CCCHHHHHH
Confidence 699999999765 344689999999 47899999999998542 56689999999999999985 345655332
Q ss_pred c------CCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCC----CCC-chHHHHhhccCCCCccccccccccc
Q 020636 120 T------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRFTLPPFLTLKNFQGLD 188 (323)
Q Consensus 120 ~------~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p----~~g-~r~~d~~~~~~~~~~~~~~~~~~~~ 188 (323)
. .+..+......-.....+.+.++..++.++.++.|+-|.. ..| ...||++.. . + ... +.+..
T Consensus 133 ~V~~VKr~e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~-d-~-~~~---V~evM 206 (556)
T 4af0_A 133 MVRRVKKYENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ-D-A-ETP---IKSVM 206 (556)
T ss_dssp HHHHHHHCCC----------------------------------------------------------------------
T ss_pred HHHHHHhcccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc-c-c-ceE---hhhhc
Confidence 1 1211111111111223344555555667777766654321 111 122333311 0 0 000 00000
Q ss_pred cCCCccc-cchhhHH---HHhh-------ccC------CccCHHHHHHHHHhcCCCEEEe------------ccC---CH
Q 020636 189 LGKMDEA-NDSGLAA---YVAG-------QID------RSLSWKDVKWLQTITKLPILVK------------GVL---TA 236 (323)
Q Consensus 189 ~~~~~~~-~~~~~~~---~~~~-------~~~------~~~~~~~i~~i~~~~~~pv~vK------------~i~---~~ 236 (323)
..++-.. .+..+.+ .+.. -.| .-.+.+++...++ .|...| ... ..
T Consensus 207 T~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~---~p~A~k~d~~grL~VgAAVgv~~d~~ 283 (556)
T 4af0_A 207 TTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN---YPYASKVPESKQLYCGAAIGTRPGDK 283 (556)
T ss_dssp ------------------------------------------------------CTTCCBCTTTCCBCCEEEECSSHHHH
T ss_pred ccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh---CCcchhcchhhceeeEEEeccCccHH
Confidence 0000000 0000000 0000 000 0012222222221 222111 111 24
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+-+..+.++|+|.|++...-|+ ....++.++.+++..+ +++||+ |.|-|.+-+...+..|||+|-+|-
T Consensus 284 eR~~aLv~AGvD~iviD~ahGh----s~~v~~~i~~ik~~~p-~~~via-GNVaT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 284 DRLKLLAEAGLDVVVLDSSQGN----SVYQIEFIKWIKQTYP-KIDVIA-GNVVTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HHHHHHHHTTCCEEEECCSCCC----SHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHhcCCcEEEEeccccc----cHHHHHHHHHHHhhCC-cceEEe-ccccCHHHHHHHHHcCCCEEeecC
Confidence 5578889999999999653332 1345678888887764 688776 999999999999999999998874
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.091 Score=49.11 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=83.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.+++. +..
T Consensus 138 ~~~~~~~~~a~~~~~~G~~~~K~K~g~~-------------------------------------------------~~~ 168 (354)
T 3jva_A 138 DEPNVMAQKAVEKVKLGFDTLKIKVGTG-------------------------------------------------IEA 168 (354)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeCCC-------------------------------------------------HHH
Confidence 4677777777777788999887765431 112
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHHHHH----HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDARIA----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a~~~----~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++.+|+.+ +.++.+.. ..+.++|... .+.|++.|. +. ..+..++.+.++++.+ ++||.
T Consensus 169 d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa 238 (354)
T 3jva_A 169 DIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVE-------QP-VKRRDLEGLKYVTSQV--NTTIM 238 (354)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEEE-------CC-SCTTCHHHHHHHHHHC--SSEEE
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CChhhHHHHHHHHHhC--CCCEE
Confidence 355788888887 46777763 3567776433 344555443 10 1123577788888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
+++.+.+..|+.++++.| +|.|++--..+
T Consensus 239 ~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~ 268 (354)
T 3jva_A 239 ADESCFDAQDALELVKKGTVDVINIKLMKC 268 (354)
T ss_dssp ESTTCCSHHHHHHHHHHTCCSEEEECHHHH
T ss_pred EcCCcCCHHHHHHHHHcCCCCEEEECchhc
Confidence 999999999999999976 89999854433
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=95.70 E-value=0.036 Score=52.37 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=67.6
Q ss_pred CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHH
Q 020636 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (323)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (323)
.|.++.+-+..+.+.+.++++.++++|+++|+++ ++.. + |.. ...| ...+ . .+.-++.
T Consensus 221 ~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~-ntt~-~-r~~-----~~~~---~~~~----~-----~gGlSG~-- 278 (367)
T 3zwt_A 221 PAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVT-NTTV-S-RPA-----GLQG---ALRS----E-----TGGLSGK-- 278 (367)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEEC-CCBS-C-CCT-----TCCC---TTTT----S-----SSEEEEG--
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEe-CCCc-c-ccc-----cccc---cccc----c-----cCCcCCc--
Confidence 5788888776677778888999999999999875 2111 1 100 0000 0000 0 0000000
Q ss_pred HHhhccCCccCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 203 ~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
......++.++++++.+ ++||+.- ||.+.+||.+++++|||+|.+.
T Consensus 279 -----~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vg 327 (367)
T 3zwt_A 279 -----PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLY 327 (367)
T ss_dssp -----GGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred -----ccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 01223578899999998 7898765 6899999999999999999884
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.058 Score=49.17 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=56.2
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal----~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++.. .+|||++++-.++.
T Consensus 28 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (292)
T 2ojp_A 28 IDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107 (292)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 44567889999999887664211111 12345666666667789999866666666666433 37999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 108 ~~~s~~~l 115 (292)
T 2ojp_A 108 NRPSQEGL 115 (292)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.059 Score=49.04 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=55.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-++|||++++-.++.
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 106 (289)
T 2yxg_A 27 INFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYY 106 (289)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45667899999999877664211111 123456666666777899998666555555553 3347999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 107 ~~~s~~~l 114 (289)
T 2yxg_A 107 NKPTQEGL 114 (289)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.03 Score=54.98 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=133.9
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH-
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~- 118 (323)
.||++.|+|... ...+++|++|.+- +..+..|++.|||... +|..+|.+.++.|...+++. +.+.++.+
T Consensus 12 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtV------Te~~ma~a~a~~GGiGvI~~--n~s~e~qa~ 83 (496)
T 4fxs_A 12 TFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTV------TEARLAIALAQEGGIGFIHK--NMSIEQQAA 83 (496)
T ss_dssp CGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHHTCEEEECS--SSCHHHHHH
T ss_pred CcccEEEecCccccccccccccceeccccccCCCceecCcchh------hHHHHHHHHHHcCCcceecC--CCCHHHHHH
Confidence 399999999765 2335789999885 6789999999999653 34567777788887777763 33443322
Q ss_pred ------hcCC----CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCC-CCCC-chHHHHhhccCCCCccccccccc
Q 020636 119 ------STGP----GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-PRLG-RREADIKNRFTLPPFLTLKNFQG 186 (323)
Q Consensus 119 ------~~~~----~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~-p~~g-~r~~d~~~~~~~~~~~~~~~~~~ 186 (323)
.... .+.++ .....+.+.++...+.++..+.|.=+. -..| ...+|++... .....+..+..
T Consensus 84 ~V~~Vk~~~~~m~~d~v~v-----~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~--~~~~~v~diM~ 156 (496)
T 4fxs_A 84 QVHQVKIFEAGVVTHPVTV-----RPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVT--DLTKSVAAVMT 156 (496)
T ss_dssp HHHHHHHCCC--CBCCCCB-----CSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCC--CTTSBGGGTSE
T ss_pred HHHhccccccccccCceEE-----CCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcc--cCCCcHHHHhc
Confidence 2111 22221 122334566677777888877764221 0112 2455665211 11111111100
Q ss_pred -cccCCCccccchhhH---HHHhh-------------ccCCccCHHHHHHHHHh------cCCCEEEe---c--cCCHHH
Q 020636 187 -LDLGKMDEANDSGLA---AYVAG-------------QIDRSLSWKDVKWLQTI------TKLPILVK---G--VLTAED 238 (323)
Q Consensus 187 -~~~~~~~~~~~~~~~---~~~~~-------------~~~~~~~~~~i~~i~~~------~~~pv~vK---~--i~~~e~ 238 (323)
.. ....-.....+. +.+.. ..-.-.+.+++.+.... .+..+.+. + ..+.+.
T Consensus 157 p~~-~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~ 235 (496)
T 4fxs_A 157 PKE-RLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEER 235 (496)
T ss_dssp EGG-GCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHH
T ss_pred CCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHH
Confidence 00 000000000000 00000 00001223333222111 11222222 1 145788
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
++.+.++|+|.|++....++ ....++.++++++..+ ++||++ |++.+.+++.++..+|||+|.+|
T Consensus 236 a~~l~~aG~d~I~id~a~g~----~~~~~~~i~~ir~~~p-~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 236 VKALVEAGVDVLLIDSSHGH----SEGVLQRIRETRAAYP-HLEIIG-GNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp HHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHCT-TCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHhccCceEEecccccc----chHHHHHHHHHHHHCC-CceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence 99999999999998643221 2345678888888774 688888 88999999999999999999986
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.059 Score=50.10 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.++++ |-.+|||+|++-.++.
T Consensus 61 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 140 (332)
T 2r8w_A 61 IARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSY 140 (332)
T ss_dssp HHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45567899999999877664211111 123456666666777899998555555555553 3347999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 141 ~~~s~~~l 148 (332)
T 2r8w_A 141 TPLTQEEA 148 (332)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.051 Score=50.13 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=56.6
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 50 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y 129 (314)
T 3qze_A 50 VDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYY 129 (314)
T ss_dssp HHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 44567899999999876664211111 123456666666777899999666666677664 3358999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 130 ~~~s~~~l 137 (314)
T 3qze_A 130 NKPTQEGM 137 (314)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.024 Score=54.10 Aligned_cols=68 Identities=26% Similarity=0.348 Sum_probs=51.9
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
..+.++.+.++|+|.|++..+.|. .....+.+.++++.+ ++||++ |++.+.+++.++..+|||+|.+|
T Consensus 145 ~~e~~~~lveaGvdvIvldta~G~----~~~~~e~I~~ik~~~--~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 145 EIERAKLLVEAGVDVIVLDSAHGH----SLNIIRTLKEIKSKM--NIDVIV-GNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp -CHHHHHHHHHTCSEEEECCSCCS----BHHHHHHHHHHHTTC--CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC----cccHHHHHHHHHhcC--CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence 367899999999999988432221 112356677776655 688887 78999999999999999999996
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.21 Score=47.19 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+++.+.+.++++.+.||+++=+.++.+ ++...
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~~~~~ 176 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGHR------------------------------------------------DFDRD 176 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCS------------------------------------------------SHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCC------------------------------------------------CHHHH
Confidence 677777777888889999988765431 01123
Q ss_pred HHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHH--cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 214 WKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~--~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
.+.++.+|+.+ +.++.+.. ..+.+++ +.+.+ .+++.|. +. ..+..++.+.++++.++ ++||
T Consensus 177 ~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~iE-------qP-~~~~~~~~~~~l~~~~~-~iPI 247 (389)
T 2oz8_A 177 LRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVE-------DP-ILRHDHDGLRTLRHAVT-WTQI 247 (389)
T ss_dssp HHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEEE-------SC-BCTTCHHHHHHHHHHCC-SSEE
T ss_pred HHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEEe-------CC-CCCcCHHHHHHHHhhCC-CCCE
Confidence 56788888877 46777763 3456554 45566 5555542 11 11235778888887652 5999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
++++.+ +..|+.+++..| +|.|++.
T Consensus 248 a~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 248 NSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp EECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred EeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 999999 999999999987 8999996
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.063 Score=49.22 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=55.5
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 38 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 117 (303)
T 2wkj_A 38 VQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFY 117 (303)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 44567899999999877664211111 123456666666677899998656555555553 3347999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 118 ~~~s~~~l 125 (303)
T 2wkj_A 118 YPFSFEEH 125 (303)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.058 Score=49.21 Aligned_cols=83 Identities=22% Similarity=0.272 Sum_probs=55.9
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (294)
T 2ehh_A 27 IEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYY 106 (294)
T ss_dssp HHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45567899999999877664211111 123456666666677899998666656666553 3348999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 107 ~~~s~~~l 114 (294)
T 2ehh_A 107 NKPTQRGL 114 (294)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.06 Score=49.04 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=56.2
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 28 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (291)
T 3a5f_A 28 IEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYY 107 (291)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 45567899999999877664211111 123456666666777899998666656666654 3347999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 108 ~~~s~~~l 115 (291)
T 3a5f_A 108 NKTTQKGL 115 (291)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.059 Score=49.15 Aligned_cols=83 Identities=11% Similarity=0.048 Sum_probs=56.3
Q ss_pred HHHHHH-cCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEcccc
Q 020636 239 ARIAVQ-AGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMP 312 (323)
Q Consensus 239 a~~~~~-~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~ 312 (323)
++.+++ .|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++
T Consensus 30 v~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 109 (293)
T 1f6k_A 30 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 109 (293)
T ss_dssp HHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 345678 99999999877664211111 123456666666777899998666666666654 334799999999998
Q ss_pred ccCcchhhh
Q 020636 313 CQCPLTEKI 321 (323)
Q Consensus 313 ~~~~~~~~~ 321 (323)
...|..+.+
T Consensus 110 y~~~~~~~l 118 (293)
T 1f6k_A 110 YYKFSFPEI 118 (293)
T ss_dssp SSCCCHHHH
T ss_pred CCCCCHHHH
Confidence 877765543
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.047 Score=50.39 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 49 i~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 128 (315)
T 3si9_A 49 VEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYY 128 (315)
T ss_dssp HHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45567899999999876664211111 123456666666777899999666666776664 4458999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 129 ~~~~~~~l 136 (315)
T 3si9_A 129 NRPNQRGL 136 (315)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.063 Score=49.69 Aligned_cols=105 Identities=16% Similarity=0.075 Sum_probs=65.4
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
+.|.++.+-...+.+.+.++++.++++|+++|.++-... + |. +.+. +. . ....+.+ .+..
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~--~-~~-~~~~----~~-~------~~~~gg~---~g~~-- 270 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTL--D-RS-LVQG----MK-N------CDQTGGL---SGRP-- 270 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBC--C-CT-TSTT----ST-T------TTCSSEE---EEGG--
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcc--c-cc-cccc----cc-c------cccCCCc---CCch--
Confidence 357788876545556677888999999999998863211 1 11 1100 00 0 0000000 0000
Q ss_pred HHHhhccCCccCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.....++.++++++.+ ++||+.- ++.+.++|.+++++|||.|.+.
T Consensus 271 -------~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~ig 318 (336)
T 1f76_A 271 -------LQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY 318 (336)
T ss_dssp -------GHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred -------hHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEee
Confidence 0113467888999888 7898765 6799999999999999999873
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.14 Score=44.81 Aligned_cols=88 Identities=22% Similarity=0.332 Sum_probs=60.4
Q ss_pred HHhcCCCceeEEe---eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCc
Q 020636 117 VASTGPGIRFFQL---YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (323)
Q Consensus 117 i~~~~~~~~~~QL---y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
+.+..+ +.++.+ -...+.+...++.+.++++|++.+..+ + | |.
T Consensus 111 v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~ts--t---g---------~~------------------- 156 (225)
T 1mzh_A 111 IFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTS--T---G---------FA------------------- 156 (225)
T ss_dssp HHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECC--C---S---------CS-------------------
T ss_pred HHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEC--C---C---------CC-------------------
Confidence 344443 567776 233456667788889999999988322 1 1 10
Q ss_pred cccchhhHHHHhhccCCccCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+..+|+.++.+++.+ ++||+.- |+.+.+++...+++|||.|-++
T Consensus 157 ---------------~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s 204 (225)
T 1mzh_A 157 ---------------PRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTS 204 (225)
T ss_dssp ---------------SSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred ---------------CCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHc
Confidence 0114688888898877 5787655 5789999999999999987554
|
| >1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.29 Score=42.79 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=63.1
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHH
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGT 293 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~ 293 (323)
++.+.+. ++++-+-.+.+.+.|..+.++|++.|.. +-||-.|.+.+....+.++.+.+ +-+..|++. ++|++.
T Consensus 96 ~~~L~~~-GI~vn~TliFS~~QA~~aa~AGa~~iSp--fvgRidd~g~~G~~~i~~~~~~y~~~~~~t~il~A-S~r~~~ 171 (220)
T 1l6w_A 96 IKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAA-SFKTPR 171 (220)
T ss_dssp HHHHHHH-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEEB-CCSSHH
T ss_pred HHHHHHC-CCcEEEEEeCCHHHHHHHHHCCCeEEEe--ccchhhcccccHHHHHHHHHHHHHhcCCCeEEeec-ccCCHH
Confidence 3444333 7888888999999999999999998765 32332223334455555555443 224556665 699999
Q ss_pred HHHHHHHcCCCEEEEcc
Q 020636 294 DVFKALALGASGIFVSI 310 (323)
Q Consensus 294 di~kal~lGAd~V~iG~ 310 (323)
++.++..+|||.+-+.-
T Consensus 172 ~v~~~~l~G~d~~Tip~ 188 (220)
T 1l6w_A 172 QALDCLLAGCESITLPL 188 (220)
T ss_dssp HHHHHHHTTCSEEEECH
T ss_pred HHHHHHHhCCCeEECCH
Confidence 99999999999977763
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.17 Score=46.17 Aligned_cols=95 Identities=24% Similarity=0.221 Sum_probs=63.0
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCC---CCCCCCC--CcchHHHHHHHHHHhcCCCeEEEec
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH---GARQLDY--VPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~---gg~~~~~--~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
++...+.+.+..+.++++ .+...+.|+.+.++|+|+|.+-+. -.+...+ .....+.+.++.+.+ ++||++
T Consensus 9 ~~~~~~~~~~~~~~g~i~-~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~--~iPv~~-- 83 (305)
T 2nv1_A 9 TERVKRGMAEMQKGGVIM-DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAV--SIPVMA-- 83 (305)
T ss_dssp CHHHHHHHHHTTTTCEEE-EESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHC--SSCEEE--
T ss_pred cHHHHHHHHHHccCCeee-cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhC--CCCEEe--
Confidence 344445565666778887 677889999999999999943220 0000011 233567888888777 799985
Q ss_pred CCCC--HHHHHHHHHcCCCEEEEccccc
Q 020636 288 GVRR--GTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 288 GI~~--~~di~kal~lGAd~V~iG~~~~ 313 (323)
+++. ..++..++++|||+|. ++..+
T Consensus 84 k~r~g~~~~~~~~~a~GAd~V~-~~~~l 110 (305)
T 2nv1_A 84 KARIGHIVEARVLEAMGVDYID-ESEVL 110 (305)
T ss_dssp EECTTCHHHHHHHHHHTCSEEE-ECTTS
T ss_pred cccccchHHHHHHHHCCCCEEE-EeccC
Confidence 4554 6777777889999996 54443
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.22 Score=46.34 Aligned_cols=94 Identities=12% Similarity=0.156 Sum_probs=65.3
Q ss_pred HhcCCCceeEEeeec------CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCC
Q 020636 118 ASTGPGIRFFQLYVY------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (323)
Q Consensus 118 ~~~~~~~~~~QLy~~------~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~ 191 (323)
++....+.++.|.+. .+.+...+++++++++|++.|.++..... +.. ..
T Consensus 205 r~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~--------------~~~--------~~--- 259 (340)
T 3gr7_A 205 REVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIV--------------PAR--------MN--- 259 (340)
T ss_dssp HHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSS--------------CCC--------CC---
T ss_pred HHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcc--------------CCC--------CC---
Confidence 333345677777542 23566778889999999998887642111 000 00
Q ss_pred CccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 192 MDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
..+...++.++++++.+++||+.-| +.++++|+.+++.| ||.|.+
T Consensus 260 ----------------~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 260 ----------------VYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFL 306 (340)
T ss_dssp ----------------CCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred ----------------CCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEe
Confidence 0122467888999999999998875 57999999999999 999987
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.047 Score=50.38 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=56.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|=.+-.|.++ |-.+|||++++-.++.
T Consensus 51 v~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 130 (315)
T 3na8_A 51 IERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISY 130 (315)
T ss_dssp HHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45667899999999876664211111 123456666666777899999666566666654 4458999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 131 ~~~s~~~l 138 (315)
T 3na8_A 131 WKLNEAEV 138 (315)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.048 Score=48.90 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=35.3
Q ss_pred CHHHHHHHHH-hcC-CCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQT-ITK-LPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~-~~~-~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+.+.++.+++ ..+ +||++- ||.+++||..+.+.|||+|.|.
T Consensus 164 ~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVg 207 (268)
T 2htm_A 164 TRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVN 207 (268)
T ss_dssp THHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEES
T ss_pred CHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4666888988 667 999887 6799999999999999999884
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.071 Score=49.51 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=46.6
Q ss_pred HHHH--HHcCCCEEEEcCCCCCC----C------CCCcchHHHHHHHHHHhcCCCeEE-EecCCCCHHHHHHHH----Hc
Q 020636 239 ARIA--VQAGAAGIIVSNHGARQ----L------DYVPATIMALEEVVKATQGRIPVF-LDGGVRRGTDVFKAL----AL 301 (323)
Q Consensus 239 a~~~--~~~Gad~i~vs~~gg~~----~------~~~~~~~~~l~~i~~~~~~~~pvi-a~GGI~~~~di~kal----~l 301 (323)
++.+ .+.|+|.+.+--.|-.. . .......+.+.++.+.+ .+|+| .+||+ +..++++.+ ..
T Consensus 194 ~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~--~~P~v~lsgG~-~~~~fl~~v~~A~~a 270 (332)
T 3iv3_A 194 MKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAST--DLPYIYLSAGV-SAELFQETLVFAHKA 270 (332)
T ss_dssp HHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTC--SSCEEEECTTC-CHHHHHHHHHHHHHH
T ss_pred HHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 4555 47799999985322110 0 01112234566666665 79965 79998 566666554 57
Q ss_pred CC--CEEEEccccccC
Q 020636 302 GA--SGIFVSIMPCQC 315 (323)
Q Consensus 302 GA--d~V~iG~~~~~~ 315 (323)
|| .+|.+||....+
T Consensus 271 Ga~f~Gv~~GRnvwq~ 286 (332)
T 3iv3_A 271 GAKFNGVLCGRATWAG 286 (332)
T ss_dssp TCCCCEEEECHHHHTT
T ss_pred CCCcceEEeeHHHHHh
Confidence 99 999999977554
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.071 Score=50.38 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=83.5
Q ss_pred CCh---HHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 133 KDR---NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 133 ~d~---~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
.++ +.+.+.++++.+.||+++=+.++.+ +
T Consensus 135 ~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~------------------------------------------------~ 166 (382)
T 2gdq_A 135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGGT------------------------------------------------S 166 (382)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCCEEEEECSSS------------------------------------------------C
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCCC------------------------------------------------C
Confidence 456 6677777788888999887765320 1
Q ss_pred CccCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHc-CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCC
Q 020636 210 RSLSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 280 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~-Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 280 (323)
+....+.++.+|+.+ +.++.+.. ..+.+++ +.+.+. |++.|. +. ..+..++.+.++++.+ +
T Consensus 167 ~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ 236 (382)
T 2gdq_A 167 FKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLE-------EP-LPFDQPQDYAMLRSRL--S 236 (382)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEEE-------CC-SCSSCHHHHHHHHTTC--S
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEEE-------CC-CCcccHHHHHHHHhhC--C
Confidence 112456788888887 47788773 3567775 344455 665553 11 1123577788888776 7
Q ss_pred CeEEEecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 281 IPVFLDGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 281 ~pvia~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
+||++++.+.+..++.++++.| +|.|++--
T Consensus 237 iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 267 (382)
T 2gdq_A 237 VPVAGGENMKGPAQYVPLLSQRCLDIIQPDV 267 (382)
T ss_dssp SCEEECTTCCSHHHHHHHHHTTCCSEECCCT
T ss_pred CCEEecCCcCCHHHHHHHHHcCCCCEEecCc
Confidence 9999999999999999999987 89988743
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.065 Score=48.91 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=55.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 30 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 109 (294)
T 3b4u_A 30 ARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSY 109 (294)
T ss_dssp HHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 44567899999999877664211111 123455556666667899998666656566554 3348999999999988
Q ss_pred cC-cchhhh
Q 020636 314 QC-PLTEKI 321 (323)
Q Consensus 314 ~~-~~~~~~ 321 (323)
.. |..+.+
T Consensus 110 ~~~~s~~~l 118 (294)
T 3b4u_A 110 FKNVSDDGL 118 (294)
T ss_dssp SCSCCHHHH
T ss_pred CCCCCHHHH
Confidence 77 655443
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.15 Score=45.98 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=66.0
Q ss_pred CccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHH-HH---HHHHHHhcCCC
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM-AL---EEVVKATQGRI 281 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~-~l---~~i~~~~~~~~ 281 (323)
...+...++++++. +-|+++=.+.+.-.|+.+.++|+|.|.+....+. ..|+.+-+++ .+ +.+.+.+ .+.
T Consensus 14 ~~~t~~~lr~~~~~-g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~-~~~ 91 (275)
T 3vav_A 14 PAVTVPKLQAMREA-GEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQ-PRA 91 (275)
T ss_dssp CCCCHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTC-CSS
T ss_pred CCcCHHHHHHHHHC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcC-CCC
Confidence 34567777777664 5688888889999999999999999965432221 1244444543 33 3344433 258
Q ss_pred eEEEec---CCCCHHHHH----HHHHcCCCEEEE
Q 020636 282 PVFLDG---GVRRGTDVF----KALALGASGIFV 308 (323)
Q Consensus 282 pvia~G---GI~~~~di~----kal~lGAd~V~i 308 (323)
||++|- |..++++++ +.+..||++|-|
T Consensus 92 ~vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVkl 125 (275)
T 3vav_A 92 LIVADLPFGTYGTPADAFASAVKLMRAGAQMVKF 125 (275)
T ss_dssp EEEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 999984 567888875 566689999988
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.061 Score=50.73 Aligned_cols=122 Identities=10% Similarity=0.095 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHH
Q 020636 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (323)
Q Consensus 136 ~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (323)
+.+.+.++++.+.|++++=+.++++- .++....+
T Consensus 148 e~~~~~a~~~~~~Gf~~iKlk~g~~g----------------------------------------------~~~~~d~~ 181 (374)
T 3sjn_A 148 EDNVAIVQGLKDQGFSSIKFGGGVMG----------------------------------------------DDPDTDYA 181 (374)
T ss_dssp GGGHHHHHHHHTTTCSEEEEECTTTT----------------------------------------------SCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeccCCCC----------------------------------------------CCHHHHHH
Confidence 66667777888889999887765421 01223466
Q ss_pred HHHHHHHhc--CCCEEEec--cCC-HHHHHH----HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 216 DVKWLQTIT--KLPILVKG--VLT-AEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 216 ~i~~i~~~~--~~pv~vK~--i~~-~e~a~~----~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
.++.+|+.+ +.++.+.. ..+ .++|.. +.+.|++.|.- . ..+..++.+.++++.+ ++||+++
T Consensus 182 ~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~iPIa~d 251 (374)
T 3sjn_A 182 IVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWIEE-------P-VLADSLISYEKLSRQV--SQKIAGG 251 (374)
T ss_dssp HHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEEEC-------S-SCTTCHHHHHHHHHHC--SSEEEEC
T ss_pred HHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEEEC-------C-CCcccHHHHHHHHhhC--CCCEEeC
Confidence 788899986 46788773 356 777544 44568777741 1 1123578888888877 8999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 287 GGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 287 GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
+.+.+..|+.++++.| +|.|++--..+
T Consensus 252 E~~~~~~~~~~~l~~~~~d~v~~k~~~~ 279 (374)
T 3sjn_A 252 ESLTTRYEFQEFITKSNADIVQPDITRC 279 (374)
T ss_dssp TTCCHHHHHHHHHHHHCCSEECCBTTTS
T ss_pred CCcCCHHHHHHHHHcCCCCEEEeCcccc
Confidence 9999999999999875 89988754433
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.18 Score=46.74 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=64.8
Q ss_pred HhcCCCceeEEeee------cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCC
Q 020636 118 ASTGPGIRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (323)
Q Consensus 118 ~~~~~~~~~~QLy~------~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~ 191 (323)
++..+.+.++.|.. ..+.+...++++++++.|++.|.++-..... ..+ +
T Consensus 205 r~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~--------~~~--~--------------- 259 (338)
T 1z41_A 205 KQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVH--------ADI--N--------------- 259 (338)
T ss_dssp HHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSC--------CCC--C---------------
T ss_pred HHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc--------CCC--C---------------
Confidence 33334466777654 2346667788899999999998876321100 000 0
Q ss_pred CccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 192 MDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
..+...++.++++++.+++||+.-| +.+.+++..+++.| ||.|.+
T Consensus 260 ----------------~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~i 306 (338)
T 1z41_A 260 ----------------VFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI 306 (338)
T ss_dssp ----------------CCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred ----------------CCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEee
Confidence 0122457788999999999998775 56999999999999 999987
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.066 Score=49.15 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=56.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 118 (306)
T 1o5k_A 39 VRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY 118 (306)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45667899999999877664211111 123456666666677899998666656666554 3347999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 119 ~~~s~~~l 126 (306)
T 1o5k_A 119 NKPTQEGL 126 (306)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.095 Score=49.62 Aligned_cols=122 Identities=8% Similarity=0.025 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+++.+.+.++++.+.|++++=+.++.+ ++...
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~------------------------------------------------~~~~~ 196 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGA------------------------------------------------PIEED 196 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSS------------------------------------------------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC------------------------------------------------CHHHH
Confidence 667677777777888999888765431 01123
Q ss_pred HHHHHHHHHhc--CCCEEEe--ccCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTIT--KLPILVK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK--~i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+|+.+ +.++.+. +..+.+++ +.+.+.|++.|. +. ..+..++.+.++++.+ ++||++
T Consensus 197 ~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa~ 266 (392)
T 1tzz_A 197 RMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYE-------EV-GDPLDYALQAALAEFY--PGPMAT 266 (392)
T ss_dssp HHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEE-------CC-SCTTCHHHHHHHTTTC--CSCEEE
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCeec-------CC-CChhhHHHHHHHHhhC--CCCEEE
Confidence 56788888876 4677776 33566665 344456777663 11 1123577788887766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-----CCEEEEccccc
Q 020636 286 DGGVRRGTDVFKALALG-----ASGIFVSIMPC 313 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-----Ad~V~iG~~~~ 313 (323)
++.+.+..|+.+++..| +|.|++--..+
T Consensus 267 dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~ 299 (392)
T 1tzz_A 267 GENLFSHQDARNLLRYGGMRPDRDWLQFDCALS 299 (392)
T ss_dssp CTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTT
T ss_pred CCCCCCHHHHHHHHHcCCCccCCcEEEECcccc
Confidence 99999999999999987 89998854433
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.078 Score=49.76 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=82.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.||+++-+.++.+ +..
T Consensus 145 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~-------------------------------------------------~~~ 175 (371)
T 2ps2_A 145 GEPEDMRARVAKYRAKGYKGQSVKISGE-------------------------------------------------PVT 175 (371)
T ss_dssp CCHHHHHHHHHHHHTTTCCEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHhChheEEeecCCC-------------------------------------------------HHH
Confidence 5777777778888889999988765321 112
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHHHH----H-HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDARI----A-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a~~----~-~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..+.++.+|+.+ +.++.+.. ..+.+++.. + .+.|+ .|. +. .+.++.+.++++.+ ++||
T Consensus 176 ~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~iE-------~P---~~~~~~~~~l~~~~--~iPI 242 (371)
T 2ps2_A 176 DAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF-ALE-------AP---CATWRECISLRRKT--DIPI 242 (371)
T ss_dssp HHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC-EEE-------CC---BSSHHHHHHHHTTC--CSCE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC-cCc-------CC---cCCHHHHHHHHhhC--CCCE
Confidence 355678888877 46777773 356666533 3 34455 442 11 12677788887766 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
++++.+.+..|+.++++.| +|.|++--.-
T Consensus 243 ~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 272 (371)
T 2ps2_A 243 IYDELATNEMSIVKILADDAAEGIDLKISK 272 (371)
T ss_dssp EESTTCCSHHHHHHHHHHTCCSEEEEEHHH
T ss_pred EeCCCcCCHHHHHHHHHhCCCCEEEechhh
Confidence 9999999999999999987 8999985433
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.075 Score=48.63 Aligned_cols=83 Identities=14% Similarity=0.242 Sum_probs=57.1
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHH----HHHcCCCEEEEcccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMP 312 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~ 312 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+ ++|||+--|=.+-.+.++ |-.+|||++++-.++
T Consensus 34 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 113 (301)
T 3m5v_A 34 IKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPY 113 (301)
T ss_dssp HHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45567899999999877664211111 123456666677777 899999666666666664 334899999999998
Q ss_pred ccCcchhhh
Q 020636 313 CQCPLTEKI 321 (323)
Q Consensus 313 ~~~~~~~~~ 321 (323)
...|..+.+
T Consensus 114 y~~~s~~~l 122 (301)
T 3m5v_A 114 YNKPTQQGL 122 (301)
T ss_dssp SSCCCHHHH
T ss_pred CCCCCHHHH
Confidence 877765543
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.022 Score=50.04 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEEcccccc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+-++.+.++|+|++++|.+ ..+.+..+++.++ + -++..+||+-. .+..++++.|||.+.+||++..
T Consensus 125 ~~~a~~a~~~g~~GvV~sat----------~p~e~~~ir~~~~-~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~ 192 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGGT----------KLDHITQYRRDFE-K-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYN 192 (222)
T ss_dssp HHHHHHHHHHCCSEEEECTT----------CHHHHHHHHHHCT-T-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHT
T ss_pred HHHHHHHHHhCCCEEEECCC----------CHHHHHHHHHhCC-C-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcC
Confidence 45688888999999998531 1245666776665 4 68889999853 2567788899999999999988
Q ss_pred Ccch
Q 020636 315 CPLT 318 (323)
Q Consensus 315 ~~~~ 318 (323)
.++-
T Consensus 193 A~dP 196 (222)
T 4dbe_A 193 AGNP 196 (222)
T ss_dssp SSSH
T ss_pred CCCH
Confidence 7653
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.091 Score=49.41 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=55.9
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|-.+-.++++. -++|||++++-.++.
T Consensus 86 v~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY 165 (360)
T 4dpp_A 86 VNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 165 (360)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 45677899999999877664211111 1234566666667778999985555566666543 347999999999888
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 166 ~k~sq~gl 173 (360)
T 4dpp_A 166 GKTSIEGL 173 (360)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.8 Score=41.69 Aligned_cols=190 Identities=9% Similarity=0.027 Sum_probs=109.3
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee-----cCCCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-----s~~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+++-.-+.|+..++ |++.+.+.+|-.+ . .+ -+.+...-. .+-..
T Consensus 9 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ 87 (300)
T 3eb2_A 9 FPYLVSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAS-TSVAD 87 (300)
T ss_dssp EEBCCCCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEE-SSHHH
T ss_pred EEEEeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHH
Confidence 46677777543323444445677777778875443 3344556666322 2 22 356777653 46666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+.. |..-. | ...+ ..+..
T Consensus 88 ai~la~~a~~~Gadavlv~~--P~y~~-----------~-------------------~~~~-------------l~~~f 122 (300)
T 3eb2_A 88 AVAQAKLYEKLGADGILAIL--EAYFP-----------L-------------------KDAQ-------------IESYF 122 (300)
T ss_dssp HHHHHHHHHHHTCSEEEEEE--CCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHHcCCCEEEEcC--CCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 77888999999999998752 33100 0 0011 12345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.+++|+++=.+ .+++...++.+.. ..+-+= +. ..++..+.++.+.+++++.|+. |.=
T Consensus 123 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiK-------ds-sgd~~~~~~~~~~~~~~f~v~~-G~d- 191 (300)
T 3eb2_A 123 RAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAEHP-RIRYIK-------DA-STNTGRLLSIINRCGDALQVFS-ASA- 191 (300)
T ss_dssp HHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHTST-TEEEEE-------EC-SSBHHHHHHHHHHHGGGSEEEE-CTT-
T ss_pred HHHHHHCCCCEEEEECccccCCCCCHHHHHHHHcCC-CEEEEE-------cC-CCCHHHHHHHHHHcCCCeEEEe-CcH-
Confidence 6677778899988753 5678777775432 222221 11 1234455556555544565554 422
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
.-++.++.+|+++++-+..=+....+.+
T Consensus 192 --~~~~~~l~~G~~G~is~~an~~P~~~~~ 219 (300)
T 3eb2_A 192 --HIPAAVMLIGGVGWMAGPACIAPRQSVA 219 (300)
T ss_dssp --SCHHHHHHTTCCEEEEGGGGTCHHHHHH
T ss_pred --HHHHHHHhCCCCEEEeChhhhhHHHHHH
Confidence 2357789999999998876555444443
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.072 Score=49.76 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=56.1
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.++++ |-.+|||+|++-.++.
T Consensus 58 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 137 (343)
T 2v9d_A 58 IDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYY 137 (343)
T ss_dssp HHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSS
T ss_pred HHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 45567899999999877664211111 123456666666777899998666556566554 3347999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 138 ~~~s~~~l 145 (343)
T 2v9d_A 138 WKVSEANL 145 (343)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.33 E-value=1.4 Score=40.04 Aligned_cols=190 Identities=17% Similarity=0.161 Sum_probs=110.2
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-.-+.|+...+ + ++.+.+.+|-.+ . .+ -+.+.... ..+-+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 90 (297)
T 3flu_A 12 LVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTG-ANNTVE 90 (297)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred EEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHH
Confidence 46667777543323444445677777788875443 3 233456665322 2 22 35566653 345667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. .|.... | ...+ ..+..
T Consensus 91 ai~la~~a~~~Gadavlv~--~P~y~~-----------~-------------------~~~~-------------l~~~f 125 (297)
T 3flu_A 91 AIALSQAAEKAGADYTLSV--VPYYNK-----------P-------------------SQEG-------------IYQHF 125 (297)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC--CCCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 7788899999999999864 243200 0 0011 12345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.+++|+++=.+ .+++...++.+.. ..+-+= +. ..++..+.++.+.++++..|+ +|
T Consensus 126 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiK-------ds-sgd~~~~~~~~~~~~~~f~v~-~G--- 192 (297)
T 3flu_A 126 KTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIP-NIVGVK-------EA-SGNIGSNIELINRAPEGFVVL-SG--- 192 (297)
T ss_dssp HHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTTST-TEEEEE-------EC-SCCHHHHHHHHHHSCTTCEEE-EC---
T ss_pred HHHHHhCCCCEEEEECCchhccCCCHHHHHHHHcCC-CEEEEE-------eC-CCCHHHHHHHHHhcCCCeEEE-EC---
Confidence 6677778999988743 5778877776432 222221 11 123555566666665456554 44
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+-.-++.++.+|++++.-+..-+....+.+
T Consensus 193 ~d~~~l~~l~~G~~G~is~~an~~P~~~~~ 222 (297)
T 3flu_A 193 DDHTALPFMLCGGHGVITVAANAAPKLFAD 222 (297)
T ss_dssp CGGGHHHHHHTTCCEEEESGGGTCHHHHHH
T ss_pred cHHHHHHHHhCCCCEEEechHhhhHHHHHH
Confidence 234477889999999998876655554444
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.059 Score=49.26 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=55.5
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 27 v~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (297)
T 2rfg_A 27 VDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYY 106 (297)
T ss_dssp HHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 45677899999999876664211111 123456666666677899998666555555553 3347999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 107 ~~~s~~~l 114 (297)
T 2rfg_A 107 NRPSQEGL 114 (297)
T ss_dssp TCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.051 Score=51.05 Aligned_cols=113 Identities=19% Similarity=0.095 Sum_probs=66.2
Q ss_pred hcCCCceeEEeeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCCchHHHHh-hccCCCCccccccccccccCCCcccc
Q 020636 119 STGPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIK-NRFTLPPFLTLKNFQGLDLGKMDEAN 196 (323)
Q Consensus 119 ~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G-~~al~itvd~p~~g~r~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (323)
+....|.++.+-+..|.+.+.+.++.++++| +++|.++ ++-..|.. -|+. ....+.+ .+..+ -+ .
T Consensus 190 ~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~-NT~~~g~~-idi~~~~~~~~~----~~~~g----Gl---S 256 (354)
T 4ef8_A 190 EVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCI-NSIGNGLV-IDAETESVVIKP----KQGFG----GL---G 256 (354)
T ss_dssp HHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEEC-CCEEEEEC-EETTTTEESCSG----GGGEE----EE---E
T ss_pred HhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEe-cccCccee-eeccCCcccccc----ccccC----CC---C
Confidence 3344678999987777777777777778887 8888753 11000000 0000 0000000 00000 00 0
Q ss_pred chhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 197 DSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+.. -....|+.+.++++.. ++||+.- ||.+.+||.+++.+|||+|.+.
T Consensus 257 G~~---------i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vg 306 (354)
T 4ef8_A 257 GRY---------VLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVG 306 (354)
T ss_dssp GGG---------GHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEEC
T ss_pred CCC---------CchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEh
Confidence 000 0124688999999886 6888655 6899999999999999999884
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=95.30 E-value=1.6 Score=39.44 Aligned_cols=191 Identities=17% Similarity=0.198 Sum_probs=110.1
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|-++.|+.-.+-.+.++-..+.+-.-+.|+...+ ++ +.+.+.||-.+ . .+ -+.+...- ..+-..
T Consensus 6 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ 84 (291)
T 3tak_A 6 IVAIVTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTG-ANSTRE 84 (291)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred EeeeECCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHH
Confidence 35567777543323444445677777778875443 32 33456666322 2 22 35566653 245666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. .|.... | ...+ ..+..
T Consensus 85 ai~la~~a~~~Gadavlv~--~P~y~~-----------~-------------------~~~~-------------l~~~f 119 (291)
T 3tak_A 85 AIELTKAAKDLGADAALLV--TPYYNK-----------P-------------------TQEG-------------LYQHY 119 (291)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEc--CCCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 7788899999999998864 243200 0 0011 13345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.+++|+++=.+ .+++...++.+.. ..+-+= +. ..++..+.++.+..+++..|+ +|.
T Consensus 120 ~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiK-------~s-sgd~~~~~~~~~~~~~~f~v~-~G~-- 187 (291)
T 3tak_A 120 KAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAEIP-NIVGIK-------DA-TGDVPRGKALIDALNGKMAVY-SGD-- 187 (291)
T ss_dssp HHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTTST-TEEEEE-------EC-SCCHHHHHHHHHHHTTSSEEE-ECC--
T ss_pred HHHHHhcCCCEEEEecccccCCCCCHHHHHHHHcCC-CEEEEE-------eC-CCCHHHHHHHHHHcCCCeEEE-ECc--
Confidence 6677778999988743 5778877776432 222221 11 123455556666565566654 442
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
-.-++.++.+|++++.-+..-+....+.++
T Consensus 188 -d~~~~~~l~~G~~G~is~~~n~~P~~~~~l 217 (291)
T 3tak_A 188 -DETAWELMLLGADGNISVTANIAPKAMSEV 217 (291)
T ss_dssp -HHHHHHHHHTTCCEEEESGGGTCHHHHHHH
T ss_pred -HHHHHHHHHCCCCEEEechhhhcHHHHHHH
Confidence 455678899999999988766555554443
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.084 Score=48.53 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=53.7
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 35 v~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy 114 (309)
T 3fkr_A 35 VDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYH 114 (309)
T ss_dssp HHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCB
T ss_pred HHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 34567899999999877664211111 123456666666677899998756555555553 3348999999999876
Q ss_pred ---cCcchhh
Q 020636 314 ---QCPLTEK 320 (323)
Q Consensus 314 ---~~~~~~~ 320 (323)
..|..+.
T Consensus 115 ~~~~~~s~~~ 124 (309)
T 3fkr_A 115 GATFRVPEAQ 124 (309)
T ss_dssp TTTBCCCHHH
T ss_pred ccCCCCCHHH
Confidence 3454443
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.29 E-value=1.7 Score=39.76 Aligned_cols=189 Identities=13% Similarity=0.088 Sum_probs=111.8
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+..++ + ++.+.+.+|-.+ . .+ -+.+.+.- ..+-+.
T Consensus 29 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~~t~~ 107 (315)
T 3na8_A 29 IGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVS-DLTTAK 107 (315)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHH
T ss_pred EEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 47777887543334444555777777788875443 2 233456655322 2 22 35666654 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. +|.... | ...+ ..+..
T Consensus 108 ai~la~~A~~~Gadavlv~--~P~y~~-----------~-------------------s~~~-------------l~~~f 142 (315)
T 3na8_A 108 TVRRAQFAESLGAEAVMVL--PISYWK-----------L-------------------NEAE-------------VFQHY 142 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEC--CCCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 7788899999999998864 243200 0 0011 13345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHH-HHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIA-VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~-~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.+.+.+++||++=.+ .+++...++ .+.. +-+|.-+. .++..+.++.+.++++..|+. |.
T Consensus 143 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v~~-G~ 211 (315)
T 3na8_A 143 RAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKEST----------GDIQRMHKLRLLGEGRVPFYN-GC 211 (315)
T ss_dssp HHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEECS----------SCHHHHHHHHHHTTTCSCEEE-CC
T ss_pred HHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEECCC----------CCHHHHHHHHHHcCCCEEEEe-Cc
Confidence 6677778899988753 577887777 5543 22222221 234556666666655666664 32
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-.-++.++.+|+++++-+..=+....+.+
T Consensus 212 ---D~~~l~~l~~G~~G~is~~an~~P~~~~~ 240 (315)
T 3na8_A 212 ---NPLALEAFVAGAKGWCSAAPNLIPTLNGQ 240 (315)
T ss_dssp ---GGGHHHHHHHTCSEEEESGGGTCHHHHHH
T ss_pred ---hHHHHHHHHCCCCEEEechhhhCHHHHHH
Confidence 23467889999999998876554444443
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.021 Score=49.00 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=39.3
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcCC
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH 255 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~~ 255 (323)
...+.++++++.++.|+++.| +.+.|++..++++||++|..|+.
T Consensus 137 i~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~ 181 (192)
T 3kts_A 137 IIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNK 181 (192)
T ss_dssp TCHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCG
T ss_pred hhHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCH
Confidence 345789999999999999996 58999999999999999999874
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.089 Score=50.55 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=83.9
Q ss_pred CCh-HHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 133 KDR-NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 133 ~d~-~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
.++ +.+.+.++++.+.||+++=+.++. ++.
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~-------------------------------------------------~~~ 213 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGD-------------------------------------------------AAR 213 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCS-------------------------------------------------CHH
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCC-------------------------------------------------CHH
Confidence 456 767777778888899988776432 011
Q ss_pred cCHHHHHHHHHhc--CCCEEEe--ccCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCC-Ce
Q 020636 212 LSWKDVKWLQTIT--KLPILVK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR-IP 282 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK--~i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~-~p 282 (323)
...+.++.+|+.+ +.++.+. +..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ + +|
T Consensus 214 ~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~~iP 283 (428)
T 3bjs_A 214 VDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWLEE-------P-FACNDFASYREVAKIT--PLVP 283 (428)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCEEC-------C-SCTTCHHHHHHHTTTC--SSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC-------C-CCccCHHHHHHHHHhC--CCCc
Confidence 2356788888876 4677776 33566664 5566788887741 1 1123577777877766 6 99
Q ss_pred EEEecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 283 VFLDGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 283 via~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
|++++.+.+..++.++++.| +|.|++--
T Consensus 284 Ia~dE~~~~~~~~~~~i~~~~~d~v~ik~ 312 (428)
T 3bjs_A 284 IAAGENHYTRFEFGQMLDAGAVQVWQPDL 312 (428)
T ss_dssp EEECTTCCSHHHHHHHHTTCCEEEECCBT
T ss_pred EEcCCCcCCHHHHHHHHHhCCCCEEEeCc
Confidence 99999999999999999987 78887743
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.16 Score=47.98 Aligned_cols=137 Identities=17% Similarity=0.177 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.+.+...|.. . +++ ..+ ++. ..+...
T Consensus 136 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~---~-~~~--------------~~g------g~~-------~~~~~~ 184 (392)
T 2poz_A 136 DTPDEFARAVERPLKEGYGALKFYPLAQRVGSA---L-QHV--------------TRR------SMS-------AEAIEL 184 (392)
T ss_dssp CSHHHHHHHTHHHHHTTCSEEEECCCCEEETTE---E-ECC--------------BTT------BCC-------HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccccccccc---c-ccc--------------ccC------Ccc-------hhhHHH
Confidence 467777777788888999999887654321100 0 000 000 000 001223
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.+.. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||+
T Consensus 185 ~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE~-------P-~~~~~~~~~~~l~~~~--~ipIa 254 (392)
T 2poz_A 185 AYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDICFVEE-------P-CDPFDNGALKVISEQI--PLPIA 254 (392)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC-------C-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC-------C-CCcccHHHHHHHHhhC--CCCEE
Confidence 567789999987 47788773 3566665 3444567665531 0 1233678888888887 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
+++.+.+..++.++++.| +|.|++--
T Consensus 255 ~dE~~~~~~~~~~~i~~~~~d~v~ik~ 281 (392)
T 2poz_A 255 VGERVYTRFGFRKIFELQACGIIQPDI 281 (392)
T ss_dssp ECTTCCHHHHHHHHHTTTCCSEECCCT
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEecCc
Confidence 999999999999999987 89998743
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.064 Score=49.10 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=61.3
Q ss_pred HHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC--CC---CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 220 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LD---YVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 220 i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~---~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
+.+..++- ++..+.+++.|+...++||+.|.+-....+. .. ....+++.|.++++.+ .+||++-+++..-.+
T Consensus 16 ~~~~~kgg-v~~d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v--~iPvl~k~~i~~ide 92 (297)
T 4adt_A 16 WCEMLKGG-VIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCI--SINVLAKVRIGHFVE 92 (297)
T ss_dssp HHHTTTTC-EEEEESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTC--CSEEEEEEETTCHHH
T ss_pred HHHHhcCC-cccCCCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhc--CCCEEEeccCCcHHH
Confidence 33444443 3446788899999999999999875211100 01 1234788899999888 899999989988888
Q ss_pred HHHHHHcCCCEE
Q 020636 295 VFKALALGASGI 306 (323)
Q Consensus 295 i~kal~lGAd~V 306 (323)
+..+.++|||.|
T Consensus 93 ~qil~aaGAD~I 104 (297)
T 4adt_A 93 AQILEELKVDML 104 (297)
T ss_dssp HHHHHHTTCSEE
T ss_pred HHHHHHcCCCEE
Confidence 888888999999
|
| >1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.47 Score=41.48 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=65.3
Q ss_pred CHHHHHHHHHh--cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEec
Q 020636 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDG 287 (323)
Q Consensus 213 ~~~~i~~i~~~--~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~G 287 (323)
+|+=++.++.. -++++-+-.+.+.+.+..+.++|++.|.. .-||-.|.+.+....+.++.+.+ +-+..|++.
T Consensus 96 T~eGl~A~~~L~~~GI~vN~TliFS~~Qa~~aa~AGa~~iSp--FVgRidd~g~~G~~~v~~i~~~~~~~~~~t~vl~A- 172 (223)
T 1wx0_A 96 TEEGLKACKRLSAEGIKVNMTLIFSANQALLAARAGASYVSP--FLGRVDDISWDGGELLREIVEMIQVQDLPVKVIAA- 172 (223)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEEB-
T ss_pred CHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCeEEEe--ccchHhhcCCCHHHHHHHHHHHHHHcCCCeEEeec-
Confidence 45444444332 27888888999999999999999998765 33333233334555566655544 224556654
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcc
Q 020636 288 GVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~iG~ 310 (323)
++|++.++.++..+|||.+-+.-
T Consensus 173 S~r~~~~v~~~~l~G~d~~Tip~ 195 (223)
T 1wx0_A 173 SIRHPRHVTEAALLGADIATMPH 195 (223)
T ss_dssp CCCSHHHHHHHHHTTCSEEEECH
T ss_pred ccCCHHHHHHHHHhCCCEEECCH
Confidence 79999999999999999987763
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.059 Score=49.67 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=54.5
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|= +-.+.++ |-.+|||++++-.++.
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y 117 (314)
T 3d0c_A 39 VEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVH 117 (314)
T ss_dssp HHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 34567899999998776664211111 1234566666667778999875555 6666554 3347999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 118 ~~~s~~~l 125 (314)
T 3d0c_A 118 PYITDAGA 125 (314)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.16 Score=46.45 Aligned_cols=86 Identities=24% Similarity=0.339 Sum_probs=59.3
Q ss_pred HhcCCCEEEe-------c--c---CCHHH----HHHHHHcCCC----EEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 222 TITKLPILVK-------G--V---LTAED----ARIAVQAGAA----GIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 222 ~~~~~pv~vK-------~--i---~~~e~----a~~~~~~Gad----~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
+.+++|+++- + + .+++. ++.+.+.|+| .|.+-- + +.+.++.+.+ .+
T Consensus 173 ~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaELGADs~~tivK~~y----------~--e~f~~Vv~a~--~v 238 (307)
T 3fok_A 173 AAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGLGNDSSYTWMKLPV----------V--EEMERVMEST--TM 238 (307)
T ss_dssp HHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTCSSCCSSEEEEEEC----------C--TTHHHHGGGC--SS
T ss_pred HHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHhCCCcCCCEEEeCC----------c--HHHHHHHHhC--CC
Confidence 3468887663 1 1 34443 6777889999 888721 1 3456676666 79
Q ss_pred eEEEecCCCC--HHHHH----HHHH-cCCCEEEEcccccc--Ccchhhh
Q 020636 282 PVFLDGGVRR--GTDVF----KALA-LGASGIFVSIMPCQ--CPLTEKI 321 (323)
Q Consensus 282 pvia~GGI~~--~~di~----kal~-lGAd~V~iG~~~~~--~~~~~~~ 321 (323)
||+..||=.+ .++++ +++. .||.++.+||-++. +++-.++
T Consensus 239 PVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ~~~~dp~~~ 287 (307)
T 3fok_A 239 PTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYPQDGDVAAA 287 (307)
T ss_dssp CEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSSCSSSCHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhccCCCCCHHHH
Confidence 9999999874 45655 4566 59999999998888 5554443
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.078 Score=48.52 Aligned_cols=110 Identities=17% Similarity=0.088 Sum_probs=66.0
Q ss_pred CCceeEEeeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCCchHHHHh-hccCCCCccccccccccccCCCccccchh
Q 020636 122 PGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIK-NRFTLPPFLTLKNFQGLDLGKMDEANDSG 199 (323)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G-~~al~itvd~p~~g~r~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (323)
+-|.++.+....+.+...+++++++++| ++++.++- ....+.. -+.+ ....++. .. ..+.-++
T Consensus 160 ~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~-~~~~~~~-i~~~~~~~~~~~----~~---------~~gG~sg 224 (314)
T 2e6f_A 160 GLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVN-SVGNGLV-IDAESESVVIKP----KQ---------GFGGLGG 224 (314)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECC-CEEEEEC-EETTTTEESCCG----GG---------GEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeC-CCCcccc-ccCCCCCccccc----Cc---------CCCccCc
Confidence 4568888876667777788889999999 99887642 1100000 0000 0000000 00 0000000
Q ss_pred hHHHHhhccCCccCHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 200 LAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
. . .....++.++++++.+ ++||+.- ||.+.+++.+++.+|||+|.+.
T Consensus 225 ~--~-----~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig 273 (314)
T 2e6f_A 225 K--Y-----ILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVG 273 (314)
T ss_dssp G--G-----GHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEEC
T ss_pred c--c-----ccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 0 0 0113478899999998 8998766 5789999999999999999884
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.049 Score=49.20 Aligned_cols=39 Identities=33% Similarity=0.372 Sum_probs=34.1
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.++.+++..+.||++. |+.++++++.+ .|||+++|.
T Consensus 190 ~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 190 VKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp CHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 4577899999889999999 56789999997 999999994
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=1.6 Score=39.64 Aligned_cols=187 Identities=14% Similarity=0.164 Sum_probs=109.2
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceeec-----CCCCCCHHHHHh-------c-CC--CceeEEeeecCChH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-----SWSTSSVEEVAS-------T-GP--GIRFFQLYVYKDRN 136 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-----~~s~~~~eei~~-------~-~~--~~~~~QLy~~~d~~ 136 (323)
.|.++.|+ -.+-.+.++-..+.+-.-+.|+...+- ++.+.+.||-.+ . .+ -+.+...- ..+-.
T Consensus 13 ~~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg-~~~t~ 90 (301)
T 3m5v_A 13 MTALITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAG-SNATH 90 (301)
T ss_dssp EEECCCCE-ETTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECC-CSSHH
T ss_pred eEeeecCc-CCCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCC-CCCHH
Confidence 35566776 333234445557777777888755432 233455665322 2 22 24555553 24566
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 137 ~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
...++.+.++++|++++.+. +|...+ | ...+ ..+.
T Consensus 91 ~ai~la~~a~~~Gadavlv~--~P~y~~-----------~-------------------s~~~-------------l~~~ 125 (301)
T 3m5v_A 91 EAVGLAKFAKEHGADGILSV--APYYNK-----------P-------------------TQQG-------------LYEH 125 (301)
T ss_dssp HHHHHHHHHHHTTCSEEEEE--CCCSSC-----------C-------------------CHHH-------------HHHH
T ss_pred HHHHHHHHHHHcCCCEEEEc--CCCCCC-----------C-------------------CHHH-------------HHHH
Confidence 67788899999999999875 243200 0 0011 1334
Q ss_pred HHHHHHhcCCCEEEecc-------CCHHHHHHHHHc-C-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 217 VKWLQTITKLPILVKGV-------LTAEDARIAVQA-G-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~-G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.+.+.+.+++|+++=.+ .+++...++.+. . +-+|.-+. .++..+.++.+.+ ++..|+ +|
T Consensus 126 f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKdss----------gd~~~~~~~~~~~-~~f~v~-~G 193 (301)
T 3m5v_A 126 YKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEAS----------GNIDKCVDLLAHE-PRMMLI-SG 193 (301)
T ss_dssp HHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS----------SCHHHHHHHHHHC-TTSEEE-EC
T ss_pred HHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhC-CCeEEE-Ec
Confidence 56677778999988743 678888877775 2 22333221 2345555666555 456554 45
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 288 GVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
. -.-++.++.+|++++.-+..-+....+.+
T Consensus 194 ~---d~~~~~~l~~G~~G~is~~~n~~P~~~~~ 223 (301)
T 3m5v_A 194 E---DAINYPILSNGGKGVISVTSNLLPDMISA 223 (301)
T ss_dssp C---GGGHHHHHHTTCCEEEESGGGTCHHHHHH
T ss_pred c---HHHHHHHHHcCCCEEEehHHHhhHHHHHH
Confidence 2 23477889999999998876555544443
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.1 Score=47.95 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=56.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCC-CEEEEcccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGA-SGIFVSIMP 312 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGA-d~V~iG~~~ 312 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|| |++++-.++
T Consensus 34 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~ 113 (311)
T 3h5d_A 34 IEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPY 113 (311)
T ss_dssp HHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCC
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCC
Confidence 45667899999999887664211111 123456666677777899999666666677664 334797 999999998
Q ss_pred ccCcchhhh
Q 020636 313 CQCPLTEKI 321 (323)
Q Consensus 313 ~~~~~~~~~ 321 (323)
...|..+.+
T Consensus 114 y~~~s~~~l 122 (311)
T 3h5d_A 114 YNKPSQEGM 122 (311)
T ss_dssp SSCCCHHHH
T ss_pred CCCCCHHHH
Confidence 877765543
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.066 Score=48.79 Aligned_cols=83 Identities=19% Similarity=0.333 Sum_probs=55.2
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++ |-.+|||+|++-.++.
T Consensus 27 v~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (292)
T 2vc6_A 27 VEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYY 106 (292)
T ss_dssp HHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 45677899999999777664211111 123456666666667899987555555555553 3348999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 107 ~~~s~~~l 114 (292)
T 2vc6_A 107 NKPTQEGI 114 (292)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77755543
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.25 Score=46.35 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=62.5
Q ss_pred CHHHHHHHHHhc--CCCEEEe--ccCCHHHHHH----HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVK--GVLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK--~i~~~e~a~~----~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++.+|+.+ +.++.+. +..+.++|.. +.+.|++.|. +. ..+..++.+.++++.+ ++||+
T Consensus 171 d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa 240 (367)
T 3dg3_A 171 DTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFAE-------EL-CPADDVLSRRRLVGQL--DMPFI 240 (367)
T ss_dssp HHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCEE-------SC-SCTTSHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE-------CC-CCcccHHHHHHHHHhC--CCCEE
Confidence 355688888877 4677776 2356777644 3445666663 11 1123577788888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
+++.+.+..|+.+++..| +|.|++=
T Consensus 241 ~dE~~~~~~~~~~~i~~~~~d~v~~k 266 (367)
T 3dg3_A 241 ADESVPTPADVTREVLGGSATAISIK 266 (367)
T ss_dssp ECTTCSSHHHHHHHHHHTSCSEEEEC
T ss_pred ecCCcCCHHHHHHHHHcCCCCEEEee
Confidence 999999999999999987 8998883
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=95.11 E-value=0.022 Score=50.21 Aligned_cols=70 Identities=16% Similarity=0.051 Sum_probs=45.9
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEEccccccCc
Q 020636 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 238 ~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
-++.+.++|+++++++. ...+.+.++++.++.+.++ .++||+-. .+. ++++.|||.+.+||+++..+
T Consensus 142 ~a~~a~~~G~~GvV~~a----------t~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a~ 209 (228)
T 3m47_A 142 IARMGVDLGVKNYVGPS----------TRPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLAD 209 (228)
T ss_dssp HHHHHHHTTCCEEECCS----------SCHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTSS
T ss_pred HHHHHHHhCCcEEEECC----------CChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCCC
Confidence 36677889999998743 1234566777777544555 78888753 367 88999999999999998876
Q ss_pred chh
Q 020636 317 LTE 319 (323)
Q Consensus 317 ~~~ 319 (323)
+..
T Consensus 210 dp~ 212 (228)
T 3m47_A 210 NPA 212 (228)
T ss_dssp CHH
T ss_pred CHH
Confidence 544
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.16 Score=47.72 Aligned_cols=87 Identities=8% Similarity=0.029 Sum_probs=61.7
Q ss_pred CHHHHHHHHHhc--CCCEEEe--ccCCHHHHHHHH----HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVK--GVLTAEDARIAV----QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK--~i~~~e~a~~~~----~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.+. +..+.++|.... +.|++.|. +. ..+..++.+.++++.+ ++||.
T Consensus 183 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa 252 (372)
T 3tj4_A 183 DIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWFE-------EP-LWYDDVTSHARLARNT--SIPIA 252 (372)
T ss_dssp HHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEEE-------SC-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEEE-------CC-CCchhHHHHHHHHhhc--CCCEE
Confidence 356788899887 4677777 335777765433 34444442 11 1123577888888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
+++.+.+..|+.+++..| +|.|++-
T Consensus 253 ~dE~~~~~~~~~~~i~~~~~d~v~~k 278 (372)
T 3tj4_A 253 LGEQLYTVDAFRSFIDAGAVAYVQPD 278 (372)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred eCCCccCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999987 7888874
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.28 Score=46.75 Aligned_cols=85 Identities=9% Similarity=-0.064 Sum_probs=65.4
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHHH----HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.+|.+.. ..+.++|. .+.+.|++.|..- ...++.+.++++.+ ++||+
T Consensus 199 ~~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE~P----------~~d~~~~~~l~~~~--~iPIa 266 (409)
T 3go2_A 199 LRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEID----------SYSPQGLAYVRNHS--PHPIS 266 (409)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCCSEEECC----------CSCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCeEEEeC----------cCCHHHHHHHHhhC--CCCEE
Confidence 356789999987 47788873 35677754 4446788887631 13677788888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
+++.+.+..|+.++++.| +|.|++-
T Consensus 267 ~dE~~~~~~~~~~~i~~~~~d~v~~k 292 (409)
T 3go2_A 267 SCETLFGIREFKPFFDANAVDVAIVD 292 (409)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEEEEC
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 999999999999999987 8988873
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.053 Score=50.05 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=55.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|- +-.+.++ |-.+|||+|++-.++.
T Consensus 39 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y 117 (316)
T 3e96_A 39 VDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIH 117 (316)
T ss_dssp HHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 34567899999999876664211111 1234566666777778999997674 7777664 3347999999999887
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 118 ~~~s~~~l 125 (316)
T 3e96_A 118 PYVTAGGV 125 (316)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 76655443
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.13 Score=44.36 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCCEEEec--cCCHHHHHHHHHcCCCEEEEcCC----CCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 214 WKDVKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNH----GARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~--i~~~e~a~~~~~~Gad~i~vs~~----gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.+.++.+++ +.|++ |- +.+.++...+.+..+|++.+... ||+. ..-+++.++.+. .. +.|+|.+|
T Consensus 88 ~~~~~~l~~--~~~vi-ka~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGtG---~~fdw~~l~~~~-~~--~~p~~LAG 158 (205)
T 1nsj_A 88 IELCRKIAE--RILVI-KAVGVSNERDMERALNYREFPILLDTKTPEYGGSG---KTFDWSLILPYR-DR--FRYLVLSG 158 (205)
T ss_dssp HHHHHHHHT--TSEEE-EEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCC---SCCCGGGTGGGG-GG--SSCEEEES
T ss_pred HHHHHHHhc--CCCEE-EEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCCC---CccCHHHHHhhh-cC--CCcEEEEC
Confidence 345555643 35554 53 34555655555555999988653 3321 112333343321 12 67999999
Q ss_pred CCCCHHHHHHHHH-cCCCEEEEccccccCc
Q 020636 288 GVRRGTDVFKALA-LGASGIFVSIMPCQCP 316 (323)
Q Consensus 288 GI~~~~di~kal~-lGAd~V~iG~~~~~~~ 316 (323)
|+ +++.+.+++. .++.+|=+.+.+-..|
T Consensus 159 GL-~peNV~~ai~~~~p~gVDvsSGvE~~p 187 (205)
T 1nsj_A 159 GL-NPENVRSAIDVVRPFAVDVSSGVEAFP 187 (205)
T ss_dssp SC-CTTTHHHHHHHHCCSEEEESGGGEEET
T ss_pred CC-CHHHHHHHHHhcCCCEEEECCceecCC
Confidence 99 7788988887 6999999998875433
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.078 Score=47.36 Aligned_cols=39 Identities=33% Similarity=0.521 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.++++|+.++.|+++. |+.++++++.+.+ +||+++|.
T Consensus 188 ~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVG 227 (252)
T 3tha_A 188 QDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVG 227 (252)
T ss_dssp HHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEEC
T ss_pred HHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEEC
Confidence 456889999889999999 6789999998876 69999994
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.14 Score=49.47 Aligned_cols=102 Identities=20% Similarity=0.273 Sum_probs=66.1
Q ss_pred Cc-eeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 123 ~~-~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
.| .++.+-+..+.+.+.++++.++++|+++|+++-.+.. |. ++. .+.. . .+.-++..
T Consensus 297 ~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~---~~-d~~------------~~~~-~-----~GGlSG~~ 354 (443)
T 1tv5_A 297 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ---IN-DIK------------SFEN-K-----KGGVSGAK 354 (443)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSC---CC-CCG------------GGTT-C-----CSEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcc---cc-ccc------------cccc-c-----cCCcCCCc
Confidence 46 7888876556667788889999999999988632210 00 000 0000 0 00001100
Q ss_pred HHHhhccCCccCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+ ....++.++++++.+ ++||+.- +|.+.+||.+++.+|||.|.+.
T Consensus 355 --~-----~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqig 402 (443)
T 1tv5_A 355 --L-----KDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLY 402 (443)
T ss_dssp --H-----HHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEES
T ss_pred --c-----hHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 0 113578899999998 7998755 6899999999999999999873
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.01 E-value=2 Score=38.89 Aligned_cols=188 Identities=15% Similarity=0.161 Sum_probs=108.7
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+. .+-.+.++-..+++-.-+.|+... .++ +.+.+.||-.+ . .+ -+.+...- ..+-+.
T Consensus 6 ~~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 83 (294)
T 2ehh_A 6 IVALITPFK-EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTG-GNATHE 83 (294)
T ss_dssp EEECCCCEE-TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHH
T ss_pred eeeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 355677775 543455555577777777887544 333 33456655322 2 22 34555553 235566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. +|..-. | ...+ ..+..
T Consensus 84 ai~la~~A~~~Gadavlv~--~P~y~~-----------~-------------------s~~~-------------l~~~f 118 (294)
T 2ehh_A 84 AVHLTAHAKEVGADGALVV--VPYYNK-----------P-------------------TQRG-------------LYEHF 118 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 7778899999999999875 243200 0 0011 12345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHH-HcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~-~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.+.+.+++|+++=.+ .+++...++. +.. +-+|.-+. .++..+.++.+.++++..|+ +|.
T Consensus 119 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKds~----------gd~~~~~~~~~~~~~~f~v~-~G~ 187 (294)
T 2ehh_A 119 KTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKEST----------PNMDRISEIVKRLGESFSVL-SGD 187 (294)
T ss_dssp HHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECC----------SCHHHHHHHHHHHCTTSEEE-ESS
T ss_pred HHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEE-ECc
Confidence 5667778999988643 6788887776 542 22222211 23445556655555456554 452
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-.-++.++.+|+++++-|..-+....+.+
T Consensus 188 ---d~~~~~~l~~G~~G~is~~an~~P~~~~~ 216 (294)
T 2ehh_A 188 ---DSLTLPMMALGAKGVISVANNVMPREVKE 216 (294)
T ss_dssp ---GGGHHHHHHTTCCEEEESGGGTCHHHHHH
T ss_pred ---HHHHHHHHHCCCCEEEeCHHHhhHHHHHH
Confidence 23467889999999999876655444443
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.13 Score=48.06 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=85.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.+++. +..
T Consensus 139 ~~~~~~~~~a~~~~~~G~~~~K~K~G~~-------------------------------------------------~~~ 169 (356)
T 3ro6_B 139 KPVEETLAEAREHLALGFRVLKVKLCGD-------------------------------------------------EEQ 169 (356)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeCCC-------------------------------------------------HHH
Confidence 4677777777777778999887765431 112
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|++.|. +. ..+..++.+.++++.+ ++||.
T Consensus 170 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa 239 (356)
T 3ro6_B 170 DFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFIE-------QP-FPAGRTDWLRALPKAI--RRRIA 239 (356)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCEE-------CC-SCTTCHHHHHTSCHHH--HHTEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CCCCcHHHHHHHHhcC--CCCEE
Confidence 355678888887 46777773 3566664 455678888874 11 1123567777777766 69999
Q ss_pred EecCCCCHHHHHHHHHcC--CCEEEEcccc
Q 020636 285 LDGGVRRGTDVFKALALG--ASGIFVSIMP 312 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG--Ad~V~iG~~~ 312 (323)
+++-+.+..|+.+++..| +|.|++--..
T Consensus 240 ~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~ 269 (356)
T 3ro6_B 240 ADESLLGPADAFALAAPPAACGIFNIKLMK 269 (356)
T ss_dssp ESTTCCSHHHHHHHHSSSCSCSEEEECHHH
T ss_pred eCCcCCCHHHHHHHHhcCCcCCEEEEcccc
Confidence 999999999999999975 9999985433
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.22 Score=47.03 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=64.5
Q ss_pred CHHHHHHHHHhc--CCCEEEe--ccCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK--~i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++.+|+.+ +.++.+. +..+.++| +.+.+.|++.|. +. ..+..++.+.++++.+ .+||.
T Consensus 199 d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~--~iPIa 268 (383)
T 3toy_A 199 DEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIE-------EP-VPQENLSGHAAVRERS--EIPIQ 268 (383)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------CC-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE-------CC-CCcchHHHHHHHHhhc--CCCEE
Confidence 356788888887 4677776 33566665 445567877774 11 1123577788888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIM 311 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~ 311 (323)
++..+.+..|+.++++.| +|.|++--.
T Consensus 269 ~dE~~~~~~~~~~~i~~~a~d~v~ik~~ 296 (383)
T 3toy_A 269 AGENWWFPRGFAEAIAAGASDFIMPDLM 296 (383)
T ss_dssp ECTTCCHHHHHHHHHHHTCCSEECCCTT
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 999999999999999987 888887543
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.29 Score=46.39 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=63.2
Q ss_pred CHHHHHHHHHhc--CCCEEEe--ccCCHHHHH----HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVK--GVLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK--~i~~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++.+|+.+ +.++.+. +..+.++|. .+.+.|++.|.= . ..+..++.+.++++.+ ++||.
T Consensus 205 d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPIa 274 (390)
T 3ugv_A 205 DIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWIEE-------P-VVYDNFDGYAQLRHDL--KTPLM 274 (390)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC-------C-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEC-------C-CCcccHHHHHHHHHhc--CCCEE
Confidence 355788888887 4677776 335677653 444567776641 1 1123577888888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
++..+.+..|+.++++.| +|.|++-
T Consensus 275 ~dE~~~~~~~~~~~i~~~a~d~v~ik 300 (390)
T 3ugv_A 275 IGENFYGPREMHQALQAGACDLVMPD 300 (390)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999987 8888774
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.072 Score=52.06 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.+.+..+.++|+|.|.++...|. ....++.+.++++.++ ++||++ |++.+.+++.++..+|||++.+|.
T Consensus 239 ~~~a~~l~~aGvd~v~i~~~~G~----~~~~~e~i~~i~~~~p-~~pvi~-g~~~t~e~a~~l~~~G~d~I~v~~ 307 (494)
T 1vrd_A 239 MERVEKLVKAGVDVIVIDTAHGH----SRRVIETLEMIKADYP-DLPVVA-GNVATPEGTEALIKAGADAVKVGV 307 (494)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TSCEEE-EEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHhCCCEEEEEecCCc----hHHHHHHHHHHHHHCC-CceEEe-CCcCCHHHHHHHHHcCCCEEEEcC
Confidence 57789999999999998543221 1236688888888775 589887 788999999999999999999954
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.14 Score=48.80 Aligned_cols=131 Identities=11% Similarity=0.037 Sum_probs=88.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+++.+.+.++++.+.|++++=+ ++++..+. + . . ..+..
T Consensus 123 ~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~--------~------------~----~---------------~~~~~ 162 (405)
T 3rr1_A 123 GDRPADVIAGMKALQAGGFDHFKL-NGCEEMGI--------I------------D----T---------------SRAVD 162 (405)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSC--------B------------C----S---------------HHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccc--------c------------c----c---------------chhHH
Confidence 356777777778888889999877 65442110 0 0 0 00112
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.+|.+.. ..+.++| +.+.+.|++.|.-- ..+..++.+.++++.+ ++||
T Consensus 163 ~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPI 232 (405)
T 3rr1_A 163 AAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEEP--------VLAEQAETYARLAAHT--HLPI 232 (405)
T ss_dssp HHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCCSCEECS--------SCCSSTHHHHHHHTTC--SSCE
T ss_pred HHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhcC--CCCE
Confidence 3466788999987 46787773 3567765 44556788877421 1123567778887766 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
++++.+.+..|+.++++.| +|.|++--..
T Consensus 233 a~dE~i~~~~~~~~~l~~~a~d~v~~d~~~ 262 (405)
T 3rr1_A 233 AAGERMFSRFDFKRVLEAGGVSILQPDLSH 262 (405)
T ss_dssp EECTTCCSHHHHHHHHHHCCCSEECCBTTT
T ss_pred EecCCcCCHHHHHHHHHHhCCCeEEEChhh
Confidence 9999999999999999987 8988875433
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.19 Score=47.90 Aligned_cols=135 Identities=19% Similarity=0.142 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.++++..+. .+. .+ . ..++..
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~------~g~-~~----------------------~-------~~~~~~ 193 (404)
T 4e5t_A 150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYTIY------DGH-QP----------------------S-------LEDLER 193 (404)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSCCCBTT------CSB-CC----------------------C-------HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeCCCCCCccc------ccc-cc----------------------c-------HHHHHH
Confidence 35677777777777789999988766543110 000 00 0 001223
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.+|.+.. ..+.++| +.+.+.|++.|.-- ..+..++.+.++++.+ ++||+
T Consensus 194 d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEeP--------~~~~~~~~~~~l~~~~--~iPIa 263 (404)
T 4e5t_A 194 SEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYDPLWFEEP--------IPPEKPEDMAEVARYT--SIPVA 263 (404)
T ss_dssp HHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCcEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 466788999987 46888873 3566665 45556788887521 1123577888888887 89999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
+++.+.+..|+.++++.| +|.|++--..+
T Consensus 264 ~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~ 293 (404)
T 4e5t_A 264 TGERLCTKYEFSRVLETGAASILQMNLGRV 293 (404)
T ss_dssp ECTTCCHHHHHHHHHHHTCCSEECCCTTTS
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEecCcccc
Confidence 999999999999999987 89888754443
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.39 Score=41.62 Aligned_cols=126 Identities=15% Similarity=0.111 Sum_probs=80.3
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEec-CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itv-d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
...|...+.+.++.+.+.|++.+-+.+ |.+.. | +
T Consensus 18 ~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~-------------~--------------------------------~ 52 (230)
T 1rpx_A 18 LSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFV-------------P--------------------------------N 52 (230)
T ss_dssp GGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSS-------------S--------------------------------C
T ss_pred ecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcc-------------c--------------------------------c
Confidence 356777777888999999998776654 22210 0 0
Q ss_pred CccCHHHHHHHHHhcCCCEEEecc-CCH-HHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGV-LTA-EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i-~~~-e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.....+.++++++.++.|+.+-.. .++ +.++.+.++|+|+|.++.. .. ....+.+..+.+. .+.++.
T Consensus 53 ~~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~~------~~~~~~~~~~~~~---g~~ig~ 123 (230)
T 1rpx_A 53 ITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST------IHLHRTINQIKSL---GAKAGV 123 (230)
T ss_dssp BCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTC------SCHHHHHHHHHHT---TSEEEE
T ss_pred cccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCccc------hhHHHHHHHHHHc---CCcEEE
Confidence 113357788898887777766543 444 4688899999999988543 21 2223445444432 355555
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+=--.+..+.++++..|+|.|.+.+
T Consensus 124 ~~~p~t~~e~~~~~~~~~d~vl~~~ 148 (230)
T 1rpx_A 124 VLNPGTPLTAIEYVLDAVDLVLIMS 148 (230)
T ss_dssp EECTTCCGGGGTTTTTTCSEEEEES
T ss_pred EeCCCCCHHHHHHHHhhCCEEEEEE
Confidence 5434567777777778999995544
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.87 E-value=2.3 Score=38.96 Aligned_cols=189 Identities=16% Similarity=0.153 Sum_probs=110.9
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--cC---CCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s~---~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+++-.-+.|+..++ ++ +.+.+.+|-.+ . .+ -+.+...- ..+-..
T Consensus 27 ~~alvTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~~ 105 (315)
T 3si9_A 27 VTALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAG-SNSTSE 105 (315)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHH
T ss_pred eEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHH
Confidence 46677787533323444445777777788875543 22 33455555322 2 22 35666654 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. +|...+ | ...+ ..+..
T Consensus 106 ai~la~~A~~~Gadavlv~--~P~y~~-----------~-------------------~~~~-------------l~~~f 140 (315)
T 3si9_A 106 AVELAKHAEKAGADAVLVV--TPYYNR-----------P-------------------NQRG-------------LYTHF 140 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 7788899999999998865 243200 0 0011 13345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHH-cC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQ-AG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~-~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.+.+.+++||++=.+ .+++...++.+ .. +-+|.-+. .++..+.++.+.++++..|+ +|.
T Consensus 141 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdss----------gd~~~~~~l~~~~~~~f~v~-~G~ 209 (315)
T 3si9_A 141 SSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKDAT----------GKIERASEQREKCGKDFVQL-SGD 209 (315)
T ss_dssp HHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECS----------CCTHHHHHHHHHHCSSSEEE-ESC
T ss_pred HHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE-ecC
Confidence 6677778999988743 57888877776 43 22222221 12344555555565566664 452
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 289 VRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 289 I~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-.-++.++.+|+++++-+..-+....+.+
T Consensus 210 ---d~~~l~~l~~G~~G~is~~an~~P~~~~~ 238 (315)
T 3si9_A 210 ---DCTALGFNAHGGVGCISVSSNVAPKLCAQ 238 (315)
T ss_dssp ---GGGHHHHHHTTCCEEEESGGGTCHHHHHH
T ss_pred ---HHHHHHHHHcCCCEEEecHHHhhHHHHHH
Confidence 33467889999999998876655554444
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.061 Score=47.72 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=46.8
Q ss_pred HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HH---------HHHHHHcCCCEEEEcc
Q 020636 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TD---------VFKALALGASGIFVSI 310 (323)
Q Consensus 241 ~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~d---------i~kal~lGAd~V~iG~ 310 (323)
...+.|.++++.+ ..+ +.++++.++ ..+++++|||+-. .+ +.+++..|||.+.+||
T Consensus 151 ~~~~~G~~g~V~~------------~~e-i~~lr~~~~-~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr 216 (246)
T 2yyu_A 151 LAKESGLDGVVCS------------ANE-AAFIKERCG-ASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGR 216 (246)
T ss_dssp HHHHHTCCEEECC------------HHH-HHHHHHHHC-TTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECH
T ss_pred HHHHhCCCEEEeC------------HHH-HHHHHHhcC-CCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECH
Confidence 3467888887542 344 666666664 3459999999853 22 7778889999999999
Q ss_pred ccccCcchhh
Q 020636 311 MPCQCPLTEK 320 (323)
Q Consensus 311 ~~~~~~~~~~ 320 (323)
.++..++..+
T Consensus 217 ~I~~a~dp~~ 226 (246)
T 2yyu_A 217 SLTRAADPLR 226 (246)
T ss_dssp HHHTSSSHHH
T ss_pred hhcCCCCHHH
Confidence 9988766443
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.3 Score=45.82 Aligned_cols=122 Identities=13% Similarity=0.201 Sum_probs=84.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.++.. +..
T Consensus 139 ~~~e~~~~~a~~~~~~G~~~~K~KvG~~-------------------------------------------------~~~ 169 (368)
T 3q45_A 139 DEPHKMAADAVQIKKNGFEIIKVKVGGS-------------------------------------------------KEL 169 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecCC-------------------------------------------------HHH
Confidence 4677777777777778999887655321 112
Q ss_pred CHHHHHHHHHhc--CCCEEEe--ccCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK--~i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.+. +..+.++| +.+.+.|++.|.= . ..+..++.+.++++.+ .+||.
T Consensus 170 d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEq-------P-~~~~~~~~~~~l~~~~--~iPIa 239 (368)
T 3q45_A 170 DVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHCEE-------P-VSRNLYTALPKIRQAC--RIPIM 239 (368)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCEEC-------C-BCGGGGGGHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEEEC-------C-CChhHHHHHHHHHhhC--CCCEE
Confidence 355788888887 4667776 23466665 4455677777741 0 1123456677787766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
+++.+.+..|+.+++..| +|.|++--..+
T Consensus 240 ~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~ 269 (368)
T 3q45_A 240 ADESCCNSFDAERLIQIQACDSFNLKLSKS 269 (368)
T ss_dssp ESTTCCSHHHHHHHHHTTCCSEEEECTTTT
T ss_pred EcCCcCCHHHHHHHHHcCCCCeEEechhhc
Confidence 999999999999999986 89998864444
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=94.75 E-value=2.4 Score=38.80 Aligned_cols=190 Identities=15% Similarity=0.159 Sum_probs=110.4
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ec---CCCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LS---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs---~~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-.-+.|+..+ .+ ++.+.+.||-.+ . .+ -+.+.... ..+-..
T Consensus 28 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~e 106 (314)
T 3qze_A 28 MVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTG-ANSTRE 106 (314)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHH
Confidence 4667778754332344444567777777887433 22 334456665322 2 22 35566654 245666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. .|...+ | ...+ ..+..
T Consensus 107 ai~la~~A~~~Gadavlv~--~P~y~~-----------~-------------------s~~~-------------l~~~f 141 (314)
T 3qze_A 107 AVALTEAAKSGGADACLLV--TPYYNK-----------P-------------------TQEG-------------MYQHF 141 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHHcCCCEEEEc--CCCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 7788899999999999865 243200 0 0011 12345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.+++|+++=.+ .+++...++.+.. ..+-+= +. ..++..+.++.+..+++..|+ +|.
T Consensus 142 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiK-------ds-sgd~~~~~~~~~~~~~~f~v~-~G~-- 209 (314)
T 3qze_A 142 RHIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVP-NIIGIK-------EA-TGDLQRAKEVIERVGKDFLVY-SGD-- 209 (314)
T ss_dssp HHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEE-------EC-SCCHHHHHHHHHHSCTTSEEE-ESC--
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCC-CEEEEE-------cC-CCCHHHHHHHHHHcCCCeEEE-ecC--
Confidence 6677778999988743 5788877776532 222221 11 124555666666665556654 443
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-.-++.++.+||+++.-+..-+....+.+
T Consensus 210 -d~~~l~~l~~Ga~G~is~~an~~P~~~~~ 238 (314)
T 3qze_A 210 -DATAVELMLLGGKGNISVTANVAPRAMSD 238 (314)
T ss_dssp -GGGHHHHHHTTCCEEEESGGGTCHHHHHH
T ss_pred -hHHHHHHHHCCCCEEEecHHhhhHHHHHH
Confidence 23377889999999998876655554444
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.38 Score=41.80 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=80.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEec-CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCC
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itv-d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (323)
..|...+.+.++++++.|++.+-+.+ |.+. .| +.
T Consensus 15 a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~f-------------v~--------------------------------~~ 49 (228)
T 1h1y_A 15 SSDFANLAAEADRMVRLGADWLHMDIMDGHF-------------VP--------------------------------NL 49 (228)
T ss_dssp GSCGGGHHHHHHHHHHTTCSEEEEEEEBSSS-------------SS--------------------------------CB
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEEEEecCCc-------------Cc--------------------------------ch
Confidence 45666677888999999999875432 2211 01 01
Q ss_pred ccCHHHHHHHHHhcCCCEEEecc-C-CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcch-HHHHHHHHHHhcCCCeEEEec
Q 020636 211 SLSWKDVKWLQTITKLPILVKGV-L-TAEDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~~pv~vK~i-~-~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~~pvia~G 287 (323)
.+..+.++.+++.++.|+.+... . ..+.++.+.++|+|+|.++ ++.. ... .+.+..+.+. .+.++.+=
T Consensus 50 ~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~vH--~~~~----~~~~~~~~~~i~~~---g~~igv~~ 120 (228)
T 1h1y_A 50 TIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFH--IEVS----RDNWQELIQSIKAK---GMRPGVSL 120 (228)
T ss_dssp CBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEE--GGGC----TTTHHHHHHHHHHT---TCEEEEEE
T ss_pred hhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEEC--CCCc----ccHHHHHHHHHHHc---CCCEEEEE
Confidence 23457888899887667764432 2 3345788889999999994 4321 123 3445555432 45666655
Q ss_pred CCCCHHHHHHHHHc---CCCEEEEcccc
Q 020636 288 GVRRGTDVFKALAL---GASGIFVSIMP 312 (323)
Q Consensus 288 GI~~~~di~kal~l---GAd~V~iG~~~ 312 (323)
.-.+..+.++.+.. ++|.|.+++.+
T Consensus 121 ~p~t~~e~~~~~~~~~~~~d~vl~~sv~ 148 (228)
T 1h1y_A 121 RPGTPVEEVFPLVEAENPVELVLVMTVE 148 (228)
T ss_dssp CTTSCGGGGHHHHHSSSCCSEEEEESSC
T ss_pred eCCCCHHHHHHHHhcCCCCCEEEEEeec
Confidence 66677776776665 99999997654
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.22 Score=47.58 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=90.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.++.+..+. .+. .+ . ..++..
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~------~g~-~~---------------------~--------~~~~~~ 186 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTAY------SGH-QL---------------------S--------LEVLDR 186 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBTT------CCB-CC---------------------C--------HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCccc------ccc-cc---------------------c--------hhhHHH
Confidence 46777777777777789999987765543110 000 00 0 001223
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|++.|.-- ..+..++.+.++++.+ ++||+
T Consensus 187 d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPIa 256 (412)
T 4e4u_A 187 CELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDPLWFEEP--------VPPGQEEAIAQVAKHT--SIPIA 256 (412)
T ss_dssp HHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEECC--------SCSSCHHHHHHHHHTC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcEEECC--------CChhhHHHHHHHHhhC--CCCEE
Confidence 466788999987 46787773 3566665 44556788877521 1123578888888877 89999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
+++.+.+..|+.++++.| +|.|++--.-
T Consensus 257 ~dE~~~~~~~~~~~i~~~a~d~v~~d~~~ 285 (412)
T 4e4u_A 257 TGERLTTKYEFHKLLQAGGASILQLNVAR 285 (412)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCCTTT
T ss_pred ecCccCCHHHHHHHHHcCCCCEEEeCccc
Confidence 999999999999999987 8988875433
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.099 Score=51.47 Aligned_cols=246 Identities=14% Similarity=0.149 Sum_probs=136.5
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHH---
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE--- 116 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~ee--- 116 (323)
.||++.|+|... ...+++|++|.+- +..+..|++.|||... .|..+|.+.++.|...++.. +.++++
T Consensus 36 t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~Mdtv------Te~~lAia~a~~GgiGvIh~--~~~~~~q~~ 107 (511)
T 3usb_A 36 TFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTV------TEADMAIAMARQGGLGIIHK--NMSIEQQAE 107 (511)
T ss_dssp CGGGEEECCCCCCCCTTTSBCCEEEETTEEESSSEEECSCTTT------CSHHHHHHHHHHTCEEEECS--SSCHHHHHH
T ss_pred ceEEEEEECCcccccccceEeeeEeecccccCCCccccCchhh------cHHHHHHHHHhcCCceeecc--cCCHHHHHH
Confidence 499999999764 3346789999875 5789999999999653 35578888888888877774 334433
Q ss_pred -H---HhcC----CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecC--C-CCCC-chHHHHhhccCCCCccccccc
Q 020636 117 -V---ASTG----PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD--T-PRLG-RREADIKNRFTLPPFLTLKNF 184 (323)
Q Consensus 117 -i---~~~~----~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd--~-p~~g-~r~~d~~~~~~~~~~~~~~~~ 184 (323)
+ .... +.+.+ + .....+.+.++...+.++..+.|.=+ . -..| ...+|++... .....+..+
T Consensus 108 ~V~~V~~~~~~m~~d~v~--l---~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~--~~~~~V~~v 180 (511)
T 3usb_A 108 QVDKVKRSESGVISDPFF--L---TPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQ--DYSIKISDV 180 (511)
T ss_dssp HHHHHHTSSSCSSSSCCC--B---CTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTCC--CSSSBHHHH
T ss_pred HHHHhhccccccccCCEE--E---CCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhhc--cCCCcHHHh
Confidence 2 2211 11221 2 22233456667777888888877532 1 1112 2445554211 111111111
Q ss_pred cccccCCCc--c-ccchhhHHHHhhc-------cC------CccCHHH-HHHHHHh-------cCCCEEEecc---CCHH
Q 020636 185 QGLDLGKMD--E-ANDSGLAAYVAGQ-------ID------RSLSWKD-VKWLQTI-------TKLPILVKGV---LTAE 237 (323)
Q Consensus 185 ~~~~~~~~~--~-~~~~~~~~~~~~~-------~~------~~~~~~~-i~~i~~~-------~~~pv~vK~i---~~~e 237 (323)
... ..... . .......+.+... .| .-.+.++ ++.+... ..+++.+... .+.+
T Consensus 181 M~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~e 259 (511)
T 3usb_A 181 MTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMT 259 (511)
T ss_dssp CCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHH
T ss_pred ccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHH
Confidence 000 00000 0 0000001111000 00 0123444 3333220 1123333321 2367
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 238 ~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
.++.+.++|+|.|++....+. ....++.+.++++..+ ++||++ |+|.+.+++.++..+|||+|.+|
T Consensus 260 ra~aLveaGvd~I~Id~a~g~----~~~v~~~i~~i~~~~~-~~~vi~-g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 260 RIDALVKASVDAIVLDTAHGH----SQGVIDKVKEVRAKYP-SLNIIA-GNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp HHHHHHHTTCSEEEEECSCTT----SHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHhhccceEEecccccc----hhhhhhHHHHHHHhCC-CceEEe-eeeccHHHHHHHHHhCCCEEEEC
Confidence 788899999999998543221 2345678888887763 578875 78999999999999999999985
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.75 Score=42.49 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=81.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.++.. +..
T Consensus 138 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~-------------------------------------------------~~~ 168 (345)
T 2zad_A 138 DTVENRVKEAKKIFEEGFRVIKIKVGEN-------------------------------------------------LKE 168 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEeecCC-------------------------------------------------HHH
Confidence 4677777777788889999987765320 011
Q ss_pred CHHHHHHHHHhc-CCCEEEe--ccCCHHHH----HHHHHcCCC--EEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTIT-KLPILVK--GVLTAEDA----RIAVQAGAA--GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK--~i~~~e~a----~~~~~~Gad--~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..+.++.+|+.- +.++.+- +..+.+++ +.+.+.|++ .|. +. ..+..++.+.++++.+ ++||
T Consensus 169 d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~iE-------~P-~~~~~~~~~~~l~~~~--~ipi 238 (345)
T 2zad_A 169 DIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYE-------QP-VRREDIEGLKFVRFHS--PFPV 238 (345)
T ss_dssp HHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEEE-------CC-SCTTCHHHHHHHHHHS--SSCE
T ss_pred HHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeee-------CC-CCcccHHHHHHHHHhC--CCCE
Confidence 245577777762 2455554 22456554 556678888 653 11 1134577888888877 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEE
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFV 308 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~i 308 (323)
.+++.+.+..|+.+++..| +|.|++
T Consensus 239 a~dE~~~~~~~~~~~i~~~~~d~v~i 264 (345)
T 2zad_A 239 AADESARTKFDVMRLVKEEAVDYVNI 264 (345)
T ss_dssp EESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred EEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999987 899988
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=1.8 Score=38.89 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.++|+.+.++|||.|++-. .+ .+...++.+.+ ++|+|.-|
T Consensus 164 i~rA~a~~eAGA~~ivlE~---------vp-~~~a~~it~~l--~iP~igIG 203 (275)
T 1o66_A 164 LNDAKAHDDAGAAVVLMEC---------VL-AELAKKVTETV--SCPTIGIG 203 (275)
T ss_dssp HHHHHHHHHTTCSEEEEES---------CC-HHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHHHcCCcEEEEec---------CC-HHHHHHHHHhC--CCCEEEEC
Confidence 3568899999999999843 23 36777888888 79999865
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.25 Score=46.91 Aligned_cols=148 Identities=15% Similarity=-0.002 Sum_probs=91.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+++.+.+.++++.+.||+++=+.++.+... .+. .|. +.+. ..+ . +.....+..
T Consensus 131 ~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~---~~~-----~~~----------~~~~-~~g--~----~~~~~~~~~ 185 (401)
T 3sbf_A 131 SDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGV---PTD-----LHT----------TQNP-TEG--S----YYDQDQYMD 185 (401)
T ss_dssp ESSHHHHHHHHHHHHHTTCCEEEEEESCCCSC---GGG-----SCC----------CSSC-CSS--E----ECCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcc---ccc-----ccc----------cccc-ccc--c----cccchHHHH
Confidence 45777777777887788999998887653210 000 000 0000 000 0 000000122
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.+|.+.. ..+.++| +.+.+.|++.|.-- ..+..++.+.++++.+ ++||
T Consensus 186 ~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~~~~~~~~l~~~~--~iPI 255 (401)
T 3sbf_A 186 NTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDI--------LPPNQTEWLDNIRSQS--SVSL 255 (401)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEECS--------SCTTCGGGHHHHHTTC--CCCE
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChhHHHHHHHHHhhC--CCCE
Confidence 3466789999987 46888873 3567765 44556788777421 0122456677777766 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMPCQ 314 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~ 314 (323)
++++.+.+..|+.++++.| +|.|++--..+|
T Consensus 256 a~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G 287 (401)
T 3sbf_A 256 GLGELFNNPEEWKSLIANRRIDFIRCHVSQIG 287 (401)
T ss_dssp EECTTCCSHHHHHHHHHTTCCSEECCCGGGGT
T ss_pred EeCCccCCHHHHHHHHhcCCCCEEecCccccC
Confidence 9999999999999999987 899888654443
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.25 Score=46.88 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=67.2
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cC-CHHHHH----HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VL-TAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~-~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..+.++.+|+.+ +.++.+.. .. +.++|. .+.+.|++.|.- . ..+..++.+.++++.+ ++||
T Consensus 186 d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~iEe-------P-~~~~~~~~~~~l~~~~--~iPI 255 (394)
T 3mqt_A 186 IVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFIEA-------C-LQHDDLIGHQKLAAAI--NTRL 255 (394)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEEES-------C-SCTTCHHHHHHHHHHS--SSEE
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEEEC-------C-CCcccHHHHHHHHhhC--CCCE
Confidence 456788899887 46788773 35 777754 445678887741 1 1123577888888887 8999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
++++.+.+..|+.++++.| +|.|++--..+
T Consensus 256 a~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~ 286 (394)
T 3mqt_A 256 CGAEMSTTRFEAQEWLEKTGISVVQSDYNRC 286 (394)
T ss_dssp EECTTCCHHHHHHHHHHHHCCSEECCCTTTS
T ss_pred EeCCCcCCHHHHHHHHHcCCCCeEecCcccc
Confidence 9999999999999999986 89998854443
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.046 Score=50.10 Aligned_cols=83 Identities=19% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+++++|||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 31 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 110 (300)
T 3eb2_A 31 CDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAY 110 (300)
T ss_dssp HHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCS
T ss_pred HHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 34567899999998776664211111 123456666666777899998555555555553 3348999999999988
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..|..+.+
T Consensus 111 ~~~~~~~l 118 (300)
T 3eb2_A 111 FPLKDAQI 118 (300)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77765543
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.19 Score=47.83 Aligned_cols=89 Identities=11% Similarity=0.018 Sum_probs=65.6
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.+|.+.. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||
T Consensus 203 ~~~e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~-------P-~~~~~~~~~~~l~~~~--~iPI 272 (410)
T 2gl5_A 203 MGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEE-------P-IHPLNSDNMQKVSRST--TIPI 272 (410)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC-------S-SCSSCHHHHHHHHHHC--SSCE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEEC-------C-CChhhHHHHHHHHhhC--CCCE
Confidence 3567789999987 47788873 3566665 4444567665531 0 1134678888888887 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
++++.+.+..++.++++.| +|.|++--
T Consensus 273 a~dE~~~~~~~~~~~i~~~~~d~v~ik~ 300 (410)
T 2gl5_A 273 ATGERSYTRWGYRELLEKQSIAVAQPDL 300 (410)
T ss_dssp EECTTCCTTHHHHHHHHTTCCSEECCCT
T ss_pred EecCCcCCHHHHHHHHHcCCCCEEecCc
Confidence 9999999999999999987 89988743
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.2 Score=47.54 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=66.3
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.++.+.. ..+.+++ +.+.+.|++.|.-- ..+..++.+.++++.+ ++||
T Consensus 200 ~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P--------~~~~~~~~~~~l~~~~--~iPI 269 (407)
T 2o56_A 200 LGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYEEP--------VMPLNPAQMKQVADKV--NIPL 269 (407)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEECS--------SCSSSHHHHHHHHHHC--CSCE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEeCC--------CChhhHHHHHHHHHhC--CCCE
Confidence 3567789999987 47788873 3566665 44556788776420 1234678888888887 8999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
++++.+.+..++.++++.| +|.|++-
T Consensus 270 a~dE~~~~~~~~~~~i~~~~~d~v~ik 296 (407)
T 2o56_A 270 AAGERIYWRWGYRPFLENGSLSVIQPD 296 (407)
T ss_dssp EECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred EeCCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999999987 8998874
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.11 Score=46.79 Aligned_cols=42 Identities=31% Similarity=0.421 Sum_probs=37.7
Q ss_pred cCHHHHHHHHHhcCCCEEE---eccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILV---KGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~v---K~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..|+.|+++++..++||++ .++.|++++..+.+.|||+|.|.
T Consensus 185 ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVG 229 (291)
T 3o07_A 185 VPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVG 229 (291)
T ss_dssp SCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEEC
T ss_pred CCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEc
Confidence 4699999999998899875 68899999999999999999984
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.49 Score=44.07 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=62.2
Q ss_pred ceeEEeee------cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccc
Q 020636 124 IRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (323)
Q Consensus 124 ~~~~QLy~------~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (323)
+.++.|-+ ..+.+...+++++++++|++.|.++...... ....|
T Consensus 221 pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~---------~~~~~--------------------- 270 (349)
T 3hgj_A 221 PLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVL---------RVRIP--------------------- 270 (349)
T ss_dssp CEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCS---------SSCCC---------------------
T ss_pred eEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCc---------ccccC---------------------
Confidence 46776653 1246667788899999999988876421110 00000
Q ss_pred hhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 198 SGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
..+...++.++++++.+++||+.-| +.++++|+.+++.| ||.|.+
T Consensus 271 ----------~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~i 317 (349)
T 3hgj_A 271 ----------LAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLL 317 (349)
T ss_dssp ----------CCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEE
T ss_pred ----------CCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEe
Confidence 0122467788999999999998876 57899999999999 999987
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.12 Score=47.43 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=51.4
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+++|||+--|-.+-.+.++ |-++|||++++-.++.
T Consensus 41 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 120 (307)
T 3s5o_A 41 LHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCY 120 (307)
T ss_dssp HHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCT
T ss_pred HHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 34566889999999887664211111 123455566666667899998656556666553 3458999999998887
Q ss_pred cC
Q 020636 314 QC 315 (323)
Q Consensus 314 ~~ 315 (323)
..
T Consensus 121 ~~ 122 (307)
T 3s5o_A 121 YR 122 (307)
T ss_dssp TG
T ss_pred CC
Confidence 54
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.12 Score=49.26 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=52.0
Q ss_pred CHHHHHHHHHcCCCEEEEc-CCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDARIAVQAGAAGIIVS-NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs-~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
..+.++.+.++|+|.|.+. .+|. ....++.+.++++.++ ++||++ |++.+.+++.++..+|||++.+|
T Consensus 154 ~~~~a~~~~~~G~d~i~i~~~~g~-----~~~~~e~i~~ir~~~~-~~pviv-~~v~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 154 TIERVEELVKAHVDILVIDSAHGH-----STRIIELIKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCS-----SHHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCC-----hHHHHHHHHHHHHHCC-CCeEEE-cCCCcHHHHHHHHhcCCCEEEEC
Confidence 3566888899999999883 2221 1234567777777764 689988 77889999999999999999994
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.31 Score=46.86 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=83.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+++.+.+.++++.+.||+++=|.++.. ....
T Consensus 198 ~~e~~~~~a~~~~~~Gf~~vKik~g~~-------------------------------------------------~~~d 228 (441)
T 2hxt_A 198 SDEKLVRLAKEAVADGFRTIKLKVGAN-------------------------------------------------VQDD 228 (441)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSC-------------------------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCC-------------------------------------------------HHHH
Confidence 677777777888889999988765321 1123
Q ss_pred HHHHHHHHHhc--CCCEEEe--ccCCHHHHHHH----HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTIT--KLPILVK--GVLTAEDARIA----VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK--~i~~~e~a~~~----~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+|+.+ +.+|.+. +..+.+++... .+.|++.|.- . ..+..++.+.++++.+. .+||++
T Consensus 229 ~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~~-~iPIa~ 299 (441)
T 2hxt_A 229 IRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEE-------P-TSPDDVLGHAAIRQGIT-PVPVST 299 (441)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCEEC-------C-SCTTCHHHHHHHHHHHT-TSCEEE
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeC-------C-CCHHHHHHHHHHHhhCC-CCCEEE
Confidence 55688888876 4677776 33567775443 4567776631 1 11235777888887762 499999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEccc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIM 311 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~ 311 (323)
++.+.+..++.++++.| +|.|++--.
T Consensus 300 dE~~~~~~~~~~~i~~~~~d~v~ik~~ 326 (441)
T 2hxt_A 300 GEHTQNRVVFKQLLQAGAVDLIQIDAA 326 (441)
T ss_dssp CTTCCSHHHHHHHHHHTCCSEECCCTT
T ss_pred eCCcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 99999999999999987 899988533
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.1 Score=47.98 Aligned_cols=91 Identities=22% Similarity=0.400 Sum_probs=57.0
Q ss_pred HHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCcccc
Q 020636 117 VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (323)
Q Consensus 117 i~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (323)
+.+..+.+.++.+....+.+...+++++++++|++.|.|+-.... .++
T Consensus 121 v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~~~~---------~~~----------------------- 168 (318)
T 1vhn_A 121 LRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVV---------QSF----------------------- 168 (318)
T ss_dssp HHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTT---------TTT-----------------------
T ss_pred HHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCCCcc---------ccC-----------------------
Confidence 334334456666654333322237788888999998887521100 000
Q ss_pred chhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHH-cCCCEEEEc
Q 020636 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQ-AGAAGIIVS 253 (323)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~-~Gad~i~vs 253 (323)
.+...|+.++++++ ++||+.- ++.+.+++..+++ .|||+|.+.
T Consensus 169 ------------~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iG 213 (318)
T 1vhn_A 169 ------------TGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVA 213 (318)
T ss_dssp ------------SSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEES
T ss_pred ------------CCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEEC
Confidence 01123555666666 7898876 5689999999998 799999884
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.45 Score=44.38 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.||+++=+.++ |..
T Consensus 140 ~~~~~~~~~a~~~~~~Gf~~vKik~~---------------------------------------------------~~~ 168 (368)
T 1sjd_A 140 DTIPQLLDVVGGYLDEGYVRIKLKIE---------------------------------------------------PGW 168 (368)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECB---------------------------------------------------TTB
T ss_pred CCHHHHHHHHHHHHHhCccEEEEecC---------------------------------------------------chh
Confidence 36776777777777889998876542 113
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHH---HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAED---ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~---a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
..+.++.+|+.+ +.++.+-. ..+.++ ++.+.+.|++.|. +. ..+..++.+.++.+.+ ++||++
T Consensus 169 ~~e~v~avr~~~g~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iE-------~P-~~~~~~~~~~~l~~~~--~ipIa~ 238 (368)
T 1sjd_A 169 DVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIE-------QP-LEEEDVLGHAELARRI--QTPICL 238 (368)
T ss_dssp SHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHTTGGGCCSEEE-------CC-SCTTCHHHHHHHHTTC--SSCEEE
T ss_pred HHHHHHHHHHhcCCCceEEEeccCCCCHHHHHHHHHHHhcCCCeEe-------CC-CChhhHHHHHHHHHhC--CCCEEE
Confidence 456777787776 35565542 233333 3444566777664 11 1123577788887766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
++.+.+..++.+++..| +|.|++=
T Consensus 239 dE~~~~~~~~~~~i~~~~~d~v~ik 263 (368)
T 1sjd_A 239 DESIVSARAAADAIKLGAVQIVNIK 263 (368)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred CCCcCCHHHHHHHHHcCCCCEEEec
Confidence 99999999999999987 8999884
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.17 Score=46.74 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=50.5
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+.+++|||+--|=.+-.+.++. -.+|||++++-.++.
T Consensus 38 v~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 117 (318)
T 3qfe_A 38 YAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAY 117 (318)
T ss_dssp HHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 34567889999999877664211111 1234566666667778999986565566666543 347999999999854
Q ss_pred c
Q 020636 314 Q 314 (323)
Q Consensus 314 ~ 314 (323)
.
T Consensus 118 ~ 118 (318)
T 3qfe_A 118 F 118 (318)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.31 Score=46.19 Aligned_cols=90 Identities=8% Similarity=-0.101 Sum_probs=66.4
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cC-CHHHHH----HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VL-TAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~-~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..+.++.+|+.+ +.++.+.. .. +.++|. .+.+.|++.|.- . ..+..++.+.++++.+ ++||
T Consensus 191 d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~iEe-------P-~~~~d~~~~~~l~~~~--~iPI 260 (394)
T 3mkc_A 191 VAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFAEA-------T-LQHDDLSGHAKLVENT--RSRI 260 (394)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEEES-------C-SCTTCHHHHHHHHHHC--SSCB
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEEEC-------C-CCchhHHHHHHHHhhC--CCCE
Confidence 466788899887 46787773 35 777754 444678887741 1 1123577888888887 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
++++.+.+..|+.++++.| +|.|++--..
T Consensus 261 a~dE~~~~~~~~~~~l~~~~~d~v~~k~~~ 290 (394)
T 3mkc_A 261 CGAEMSTTRFEAEEWITKGKVHLLQSDYNR 290 (394)
T ss_dssp EECTTCCHHHHHHHHHHTTCCSEECCCTTT
T ss_pred EeCCCCCCHHHHHHHHHcCCCCeEecCccc
Confidence 9999999999999999987 8999885433
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.18 Score=47.84 Aligned_cols=87 Identities=10% Similarity=0.021 Sum_probs=64.5
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcch-HHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~~pv 283 (323)
..+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|++.|.= . ..+.. ++.+.++++.+ ++||
T Consensus 185 d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe-------P-~~~~d~~~~~~~l~~~~--~iPI 254 (392)
T 3ddm_A 185 DVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWLEE-------P-LRADRPAAEWAELAQAA--PMPL 254 (392)
T ss_dssp HHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC-------C-SCTTSCHHHHHHHHHHC--SSCE
T ss_pred HHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEEEC-------C-CCccchHHHHHHHHHhc--CCCE
Confidence 356788899887 46788773 3566665 4455678887741 1 11224 77888888877 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
.+++.+.+..|+.++++.| +|.|++-
T Consensus 255 a~dE~~~~~~~~~~~i~~~a~d~v~~k 281 (392)
T 3ddm_A 255 AGGENIAGVAAFETALAARSLRVMQPD 281 (392)
T ss_dssp EECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999999999977 7888774
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=3 Score=37.86 Aligned_cols=188 Identities=17% Similarity=0.221 Sum_probs=107.0
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hc-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~-------~~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|-++.|+.-.+-.+.++-..+++-..+.|+... .++ +.+.+.||-. +. .+ -+.+...- ..+-+.
T Consensus 17 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~ 95 (301)
T 1xky_A 17 ATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHA 95 (301)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHH
T ss_pred EEeeECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC-CCCHHH
Confidence 4556677643322344444577777778887544 333 3345555532 22 22 34566653 245566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+.. |..-. | ...+ ..+..
T Consensus 96 ai~la~~A~~~Gadavlv~~--P~y~~-----------~-------------------s~~~-------------l~~~f 130 (301)
T 1xky_A 96 SIDLTKKATEVGVDAVMLVA--PYYNK-----------P-------------------SQEG-------------MYQHF 130 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcC--CCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 77888999999999988652 43200 0 0011 12345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
+.+.+.+++|+++=.+ .+++...++.+.. +-+|.-+. .++..+.++.+.++++..| .+|.
T Consensus 131 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~f~v-~~G~- 198 (301)
T 1xky_A 131 KAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAG----------GDVLTMTEIIEKTADDFAV-YSGD- 198 (301)
T ss_dssp HHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECS----------SCHHHHHHHHHHSCTTCEE-EESS-
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEcCC----------CCHHHHHHHHHhcCCCeEE-EECc-
Confidence 5667778899988643 5788877776532 22222211 2345556666665445555 4452
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcchh
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
-.-++.++.+|+++++-+..-+....+.
T Consensus 199 --d~~~l~~l~~G~~G~is~~an~~P~~~~ 226 (301)
T 1xky_A 199 --DGLTLPAMAVGAKGIVSVASHVIGNEMQ 226 (301)
T ss_dssp --GGGHHHHHHTTCCEEEESTHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCEEEcCHHHhCHHHHH
Confidence 2347788999999998887654444433
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=94.30 E-value=0.43 Score=44.79 Aligned_cols=40 Identities=20% Similarity=0.075 Sum_probs=34.9
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~v 252 (323)
.++.++++++.+++||+.-|-.+.++++.+++.| ||.|.+
T Consensus 282 ~~~~~~~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~~ 322 (364)
T 1vyr_A 282 SEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAF 322 (364)
T ss_dssp CHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred cHHHHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEEE
Confidence 4667889999999999888655999999999998 999987
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=94.30 E-value=2.5 Score=38.43 Aligned_cols=192 Identities=12% Similarity=0.104 Sum_probs=106.3
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|-++.|+.-.+-.+.++-..+++-..+.|+..++ + ++.+.+.||-. +... .+.+...- ..+-+.
T Consensus 19 ~~alvTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ 97 (307)
T 3s5o_A 19 YPPVTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSG-CESTQA 97 (307)
T ss_dssp ECBCCCCBCTTSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECC-CSSHHH
T ss_pred EEeeEccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecC-CCCHHH
Confidence 46667777433323333334666666677874432 2 33445665532 2222 24455543 245566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. +|..-. | +. ...+ ..+..
T Consensus 98 ai~la~~A~~~Gadavlv~--~P~y~~-----------~-~~----------------s~~~-------------l~~~f 134 (307)
T 3s5o_A 98 TVEMTVSMAQVGADAAMVV--TPCYYR-----------G-RM----------------SSAA-------------LIHHY 134 (307)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCTTG-----------G-GC----------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHHcCCCEEEEc--CCCcCC-----------C-CC----------------CHHH-------------HHHHH
Confidence 6788899999999999864 243200 0 00 0011 12345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc-CCCeEEEecCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGV 289 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~~pvia~GGI 289 (323)
+.+.+.+++|+++=.+ .+++...++.+.. ..+-+= +. ..++..+.++.+... ++..|+ +|.
T Consensus 135 ~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiK-------ds-sgd~~~~~~~~~~~~~~~f~v~-~G~- 203 (307)
T 3s5o_A 135 TKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHP-NIVGMX-------DS-GGDVTRIGLIVHKTRKQDFQVL-AGS- 203 (307)
T ss_dssp HHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEE-------EC-SCCHHHHHHHHHHTTTSSCEEE-ESS-
T ss_pred HHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhcCC-CEEEEE-------cC-CCCHHHHHHHHHhccCCCeEEE-eCc-
Confidence 5666778899988753 5788887776532 222221 11 123455556555442 355554 453
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-.-++.++++|+++++-+..=+....+.+
T Consensus 204 --d~~~l~~l~~G~~G~is~~an~~P~~~~~ 232 (307)
T 3s5o_A 204 --AGFLMASYALGAVGGVCALANVLGAQVCQ 232 (307)
T ss_dssp --GGGHHHHHHHTCCEEECGGGGTCHHHHHH
T ss_pred --HHHHHHHHHcCCCEEEechhhhhHHHHHH
Confidence 23578889999999998876554444433
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.32 Score=45.59 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=61.3
Q ss_pred ceeEEeeec-------CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCcccc
Q 020636 124 IRFFQLYVY-------KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (323)
Q Consensus 124 ~~~~QLy~~-------~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (323)
+.++.|-+. .+.+...+++++++++|++.|.++....... ...|
T Consensus 227 pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~---------~~~~-------------------- 277 (363)
T 3l5l_A 227 PLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPD---------TNIP-------------------- 277 (363)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSC---------CCCC--------------------
T ss_pred eEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccc---------cccC--------------------
Confidence 467776542 2345667778889999999988775321100 0000
Q ss_pred chhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
..+...++.++++++.+++||+.-| +.++++|+.+++.| ||.|.+
T Consensus 278 -----------~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~i 324 (363)
T 3l5l_A 278 -----------WGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSV 324 (363)
T ss_dssp -----------CCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEEC
T ss_pred -----------CCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEe
Confidence 0122457788999999999998875 46899999999999 999876
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.16 Score=47.37 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=50.7
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEcccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPCQ 314 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~~ 314 (323)
++.+++.|+|+|++.++.|....-...-...+-+. .+.+++|||+--|=.+-.+.++ |-.+|||+|++-.++..
T Consensus 53 v~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~--~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~ 130 (344)
T 2hmc_A 53 GKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER--LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLS 130 (344)
T ss_dssp HHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH--HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSS
T ss_pred HHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH--HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 45567899999999877664211111111122222 3456899998666556565553 33479999999999887
Q ss_pred C-cchhhh
Q 020636 315 C-PLTEKI 321 (323)
Q Consensus 315 ~-~~~~~~ 321 (323)
. |..+.+
T Consensus 131 ~~~s~~~l 138 (344)
T 2hmc_A 131 RGSVIAAQ 138 (344)
T ss_dssp STTCHHHH
T ss_pred CCCCHHHH
Confidence 7 654443
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.13 Score=48.00 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=36.0
Q ss_pred cCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..|+.+.++++.+ ++||+.- +|.+.+||.+++.+|||.|.+.
T Consensus 260 ~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~ig 304 (345)
T 3oix_A 260 TALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIG 304 (345)
T ss_dssp HHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEC
Confidence 4578899999998 5887655 6899999999999999999884
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.18 Score=47.81 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=64.5
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.++.+.. ..+.+++ +.+.+.|++.|.- . ..+..++.+.++++.+ ++||
T Consensus 194 ~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~-------P-~~~~d~~~~~~l~~~~--~iPI 263 (403)
T 2ox4_A 194 IGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIFFYEE-------I-NTPLNPRLLKEAKKKI--DIPL 263 (403)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEEC-------C-SCTTSTHHHHHHHHTC--CSCE
T ss_pred HHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEeC-------C-CChhhHHHHHHHHHhC--CCCE
Confidence 3567789999987 47788873 3566665 4444567665531 0 1123577888888877 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
++++.+.+..++.++++.| +|.|++-
T Consensus 264 a~dE~~~~~~~~~~~i~~~~~d~v~ik 290 (403)
T 2ox4_A 264 ASGERIYSRWGFLPFLEDRSIDVIQPD 290 (403)
T ss_dssp EECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred EecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999999987 8998874
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.053 Score=48.14 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=47.4
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH----------HHHHHHHcCCCEEEEccc
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGIFVSIM 311 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~----------di~kal~lGAd~V~iG~~ 311 (323)
..+.|.++++.+ ..+ +.++++..+ +.+++++|||+-.. .+.+++..|||.+.+||.
T Consensus 158 ~~~~G~~g~V~~------------~~e-i~~lr~~~~-~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~ 223 (245)
T 1eix_A 158 TQKCGLDGVVCS------------AQE-AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRP 223 (245)
T ss_dssp HHHTTCSEEECC------------GGG-HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHH
T ss_pred HHHcCCCeEEeC------------HHH-HHHHHHhcC-CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHH
Confidence 557888987653 234 556666654 46899999998531 367788999999999999
Q ss_pred cccCcchhh
Q 020636 312 PCQCPLTEK 320 (323)
Q Consensus 312 ~~~~~~~~~ 320 (323)
++..++..+
T Consensus 224 I~~a~dp~~ 232 (245)
T 1eix_A 224 VTQSVDPAQ 232 (245)
T ss_dssp HHTSSSHHH
T ss_pred HcCCCCHHH
Confidence 988766443
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.49 Score=45.28 Aligned_cols=92 Identities=10% Similarity=-0.047 Sum_probs=68.3
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.+|.+.. ..+.++| +.+.+.|++.|.-- ..+..++.+.++++.+ ++||
T Consensus 212 ~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPI 281 (425)
T 3vcn_A 212 SVPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLEDS--------VPAENQAGFRLIRQHT--TTPL 281 (425)
T ss_dssp TTHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCCSSTTHHHHHHHHC--CSCE
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChhhHHHHHHHHhcC--CCCE
Confidence 4577899999987 46788773 3567775 45557788887521 0122456778888877 8999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
++++.+.+..|+.++++.| +|.|++--..+
T Consensus 282 a~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~ 312 (425)
T 3vcn_A 282 AVGEIFAHVWDAKQLIEEQLIDYLRATVLHA 312 (425)
T ss_dssp EECTTCCSGGGTHHHHHTTCCSEECCCTTTT
T ss_pred EeCCCcCCHHHHHHHHHcCCCCeEecChhhc
Confidence 9999999999999999987 89988754443
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=3.1 Score=37.48 Aligned_cols=188 Identities=13% Similarity=0.140 Sum_probs=105.5
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+ .+.++-..+++-.-+.|+... .++ +.+.+.||-.+ . .+ -+.+...- ..+-+.
T Consensus 7 ~~a~vTPf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg-~~~t~~ 84 (291)
T 3a5f_A 7 GVAIITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTG-SNNTAA 84 (291)
T ss_dssp EEECCCCBCSSS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred eeeeEcCcCCCC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHH
Confidence 466677876555 566666677777778887544 332 34456655322 2 22 35566653 235566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. +|.... | ...++ .+..
T Consensus 85 ai~la~~a~~~Gadavlv~--~P~y~~-----------~-------------------s~~~l-------------~~~f 119 (291)
T 3a5f_A 85 SIAMSKWAESIGVDGLLVI--TPYYNK-----------T-------------------TQKGL-------------VKHF 119 (291)
T ss_dssp HHHHHHHHHHTTCSEEEEE--CCCSSC-----------C-------------------CHHHH-------------HHHC
T ss_pred HHHHHHHHHhcCCCEEEEc--CCCCCC-----------C-------------------CHHHH-------------HHHH
Confidence 7778899999999999875 344210 0 00111 1122
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
+.+.+.+++|+++=.+ .+++...++.+.. +-+|.-+. .++..+.++.+.++++..| .+|.
T Consensus 120 ~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~s~----------gd~~~~~~~~~~~~~~f~v-~~G~- 187 (291)
T 3a5f_A 120 KAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVXEAS----------GNISQIAQIKALCGDKLDI-YSGN- 187 (291)
T ss_dssp -CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECS----------CCHHHHHHHHHHHGGGSEE-EESC-
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHhcCCCeEE-EeCc-
Confidence 3345566788877632 5677777765432 11222111 1344455555555434554 4452
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-.-++.++.+|+++++-|..-+....+.+
T Consensus 188 --d~~~~~~l~~G~~G~is~~an~~P~~~~~ 216 (291)
T 3a5f_A 188 --DDQIIPILALGGIGVISVLANVIPEDVHN 216 (291)
T ss_dssp --GGGHHHHHHTTCCEEEESGGGTCHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEecHHHhcHHHHHH
Confidence 23467788999999998876555444443
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=94.10 E-value=3.4 Score=38.49 Aligned_cols=198 Identities=15% Similarity=0.174 Sum_probs=103.6
Q ss_pred ccceEECcccccccCCcHHH----HHHHHHHHHcCCc-----ee-ecCCCCCCHHHHHhc-C---CCceeEEeee--cCC
Q 020636 71 SMPIMIAPTAMQKMAHPEGE----YATARAASAAGTI-----MT-LSSWSTSSVEEVAST-G---PGIRFFQLYV--YKD 134 (323)
Q Consensus 71 ~~Pi~iaPm~~~~l~~~~~e----~~~a~aa~~~G~~-----~~-vs~~s~~~~eei~~~-~---~~~~~~QLy~--~~d 134 (323)
.-|++||=+|.. | +|+ ..+.++|+++|.. .+ +-++ ..+++... . .+.-++++|- .-.
T Consensus 4 ~~~~IIAEig~N---H-nGdle~Ak~lI~~A~~aGad~~~d~avKfQt~---~~d~l~~~~~~~~~~~~~~~~~~~~el~ 76 (350)
T 3g8r_A 4 SKPLFIFEMANN---H-MGNVEHGVALIRAIRESCQGFDFDFGFKLQYR---NLDTFIHSSFKGRDDVKYVKRFEETRLQ 76 (350)
T ss_dssp -CCEEEEECTTT---T-TTCSHHHHHHHHHHHHHTTTCCSEEEEEEEEC---CHHHHBCGGGTTCCSSSSHHHHHHTCCC
T ss_pred CCCEEEEEECCC---c-cCcHHHHHHHHHHHHHhCCcccCCeeEEcccc---chhhhcChhccCccHHHHHHHHHHhcCC
Confidence 469999998763 3 343 4677889999874 21 2222 23333211 0 1112333331 135
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc-cC
Q 020636 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LS 213 (323)
Q Consensus 135 ~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 213 (323)
.+....+.+.+++.|...+.--.| .+.-|+-..+.+| .-.+. ..+ .+
T Consensus 77 ~e~~~~L~~~~~~~Gi~~~st~fD-----~~svd~l~~~~v~----~~KI~-----------------------S~~~~N 124 (350)
T 3g8r_A 77 PEQMQKLVAEMKANGFKAICTPFD-----EESVDLIEAHGIE----IIKIA-----------------------SCSFTD 124 (350)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECS-----HHHHHHHHHTTCC----EEEEC-----------------------SSSTTC
T ss_pred HHHHHHHHHHHHHcCCcEEeccCC-----HHHHHHHHHcCCC----EEEEC-----------------------cccccC
Confidence 667777888888999765542221 2223333333211 10000 011 24
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHH----HHcCCCEEEE-cCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIA----VQAGAAGIIV-SNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~----~~~Gad~i~v-s~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
+..|+++.+ ++.||++| |..|.++...+ .+.|.+.+.+ +..+... ......+..++.+++..+ .+||-.++
T Consensus 125 ~pLL~~va~-~gKPviLstGmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt-~~~~~nL~aI~~Lk~~fp-~lpVG~Sd 201 (350)
T 3g8r_A 125 WPLLERIAR-SDKPVVASTAGARREDIDKVVSFMLHRGKDLTIMHCVAEYPT-PDDHLHLARIKTLRQQYA-GVRIGYST 201 (350)
T ss_dssp HHHHHHHHT-SCSCEEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSC-CGGGCCTTHHHHHHHHCT-TSEEEEEE
T ss_pred HHHHHHHHh-hCCcEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC-CcccCCHHHHHHHHHHCC-CCCEEcCC
Confidence 667777765 68999999 55688775544 3467764433 2322211 011124556777777663 48886663
Q ss_pred CCC--CHHHHHHHHHcCCCEEEEcccc
Q 020636 288 GVR--RGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 288 GI~--~~~di~kal~lGAd~V~iG~~~ 312 (323)
--. ...-.+.|.++||+ +|=+.|
T Consensus 202 Ht~g~~~~~~~AAvAlGA~--vIEkH~ 226 (350)
T 3g8r_A 202 HEDPDLMEPIMLAVAQGAT--VFEKHV 226 (350)
T ss_dssp CCCSSCCHHHHHHHHTTCC--EEEEEB
T ss_pred CCCCCccHHHHHHHHcCCC--EEEEec
Confidence 110 11334578999997 444443
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=94.09 E-value=2.4 Score=38.64 Aligned_cols=188 Identities=19% Similarity=0.223 Sum_probs=107.4
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+. .+-.+.++-..+++-..+.|+... .++ +.+.+.||-.+ . .+ -+.+...- ..+-+.
T Consensus 18 ~~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~~st~~ 95 (306)
T 1o5k_A 18 GTAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEK 95 (306)
T ss_dssp EEECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHH
T ss_pred eeeeecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCC-CccHHH
Confidence 456677775 543455555577777778887543 332 34456655322 2 22 34566653 235566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. +|.... | ...+ ..+..
T Consensus 96 ai~la~~A~~~Gadavlv~--~P~y~~-----------~-------------------s~~~-------------l~~~f 130 (306)
T 1o5k_A 96 TLKLVKQAEKLGANGVLVV--TPYYNK-----------P-------------------TQEG-------------LYQHY 130 (306)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 7788899999999999875 243200 0 0011 12334
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHH-HcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC---CCeEEE
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFL 285 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~-~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~~pvia 285 (323)
+.+.+.+++|+++=.+ .+++...++. +.. +-+|.-+. .++..+.++.+.+++ +..| .
T Consensus 131 ~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~~~f~v-~ 199 (306)
T 1o5k_A 131 KYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIXEAN----------PDIDQIDRTVSLTKQARSDFMV-W 199 (306)
T ss_dssp HHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECC----------CCHHHHHHHHHHHHHHCTTCEE-E
T ss_pred HHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEeCCC----------CCHHHHHHHHHhcCCCCCcEEE-E
Confidence 5566777899988643 5788887776 542 22222221 124444455444432 4444 4
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+|- -.-++.++.+||++++-+..-+....+.+
T Consensus 200 ~G~---d~~~l~~l~~G~~G~is~~an~~P~~~~~ 231 (306)
T 1o5k_A 200 SGN---DDRTFYLLCAGGDGVISVVSNVAPKQMVE 231 (306)
T ss_dssp ESS---GGGHHHHHHHTCCEEEESGGGTCHHHHHH
T ss_pred ECc---HHHHHHHHHCCCCEEEecHHHhhHHHHHH
Confidence 452 24477889999999999877655554444
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.05 E-value=3.6 Score=37.87 Aligned_cols=189 Identities=13% Similarity=0.020 Sum_probs=107.7
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+++-.-+.|+..+ .++ +.+.+.||-.+ . .+ -+.+...- ..+-..
T Consensus 39 ~~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~e 117 (332)
T 2r8w_A 39 SAFPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIG-ALRTDE 117 (332)
T ss_dssp EECCCCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-CSSHHH
T ss_pred eEEeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 4556677643322344444567776777787544 333 33456555322 2 22 34566654 235566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. +|...+ | ...++ .+..
T Consensus 118 ai~la~~A~~~Gadavlv~--~P~Y~~-----------~-------------------s~~~l-------------~~~f 152 (332)
T 2r8w_A 118 AVALAKDAEAAGADALLLA--PVSYTP-----------L-------------------TQEEA-------------YHHF 152 (332)
T ss_dssp HHHHHHHHHHHTCSEEEEC--CCCSSC-----------C-------------------CHHHH-------------HHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCCC-----------C-------------------CHHHH-------------HHHH
Confidence 6778899999999998864 343200 0 00111 2345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEE-EcCCCCCCCCCCcch----HHHHHHHHHHhcCCCeEEE
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGII-VSNHGARQLDYVPAT----IMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~-vs~~gg~~~~~~~~~----~~~l~~i~~~~~~~~pvia 285 (323)
+.|.+.+++||++=.+ .+++...++.+. +.|+ += +.. .+ +..+.++.+.++++..|+
T Consensus 153 ~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~--pnIvgiK-------dss-gd~~~~~~~~~~l~~~~~~~f~v~- 221 (332)
T 2r8w_A 153 AAVAGATALPLAIYNNPTTTRFTFSDELLVRLAYI--PNIRAIK-------MPL-PADADYAGELARLRPKLSDDFAIG- 221 (332)
T ss_dssp HHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHTS--TTEEEEE-------ECC-CTTCCHHHHHHHHTTTSCTTCEEE-
T ss_pred HHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHcC--CCEEEEE-------eCC-CCchhHHHHHHHHHHhcCCCEEEE-
Confidence 5666778899988643 578888777653 3332 21 111 12 555556555444344444
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+| +-.-++.++.+|+++++-+..-+....+.+
T Consensus 222 ~G---~D~~~l~~l~~G~~G~is~~anv~P~~~~~ 253 (332)
T 2r8w_A 222 YS---GDWGCTDATLAGGDTWYSVVAGLLPVPALQ 253 (332)
T ss_dssp EC---CHHHHHHHHHTTCSEEEESGGGTCHHHHHH
T ss_pred eC---chHHHHHHHHCCCCEEEeCHHHhCHHHHHH
Confidence 44 345678889999999999876665554444
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.26 Score=45.33 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=52.3
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.+..|....-.. --.+++..+.+.+ +++|||+--|=.+-.+.++. -.+|||++++-.++.
T Consensus 35 v~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~ 113 (313)
T 3dz1_A 35 TDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPS 113 (313)
T ss_dssp HHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT
T ss_pred HHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45567899999999877664211111 1234566667777 79999996665566666543 347999999988873
Q ss_pred cCcchh
Q 020636 314 QCPLTE 319 (323)
Q Consensus 314 ~~~~~~ 319 (323)
.|..+
T Consensus 114 -~~s~~ 118 (313)
T 3dz1_A 114 -LRTDE 118 (313)
T ss_dssp -CCSHH
T ss_pred -CCCHH
Confidence 34433
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.38 Score=46.06 Aligned_cols=147 Identities=14% Similarity=0.019 Sum_probs=91.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+++.+.+.++++.+.||+++=+.++..... .+. ..-|.+. . + +. +.....+..
T Consensus 152 ~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~---~~~---~~~~~~~--------~--~---~~------~~~~~~~~~ 206 (422)
T 3tji_A 152 GETLEALFASVDALIAQGYRHIRCQLGFYGGT---PSA---LHAPDNP--------T--P---GA------WFDQQEYMS 206 (422)
T ss_dssp ESSHHHHHHHHHHHHHTTCSEEEEEESCCCBC---GGG---SCCCSSC--------C--S---SE------ECCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcc---ccc---ccccccc--------c--c---cc------cccchhHHH
Confidence 45777777777887789999998887643110 000 0000000 0 0 00 000000012
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.+|.+.. ..+.++| +.+.+.|++.|.- . ..+..++.+.++++.+ ++||
T Consensus 207 ~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPI 276 (422)
T 3tji_A 207 NTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFIED-------I-LPPQQSAWLEQVRQQS--CVPL 276 (422)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC-------C-SCGGGGGGHHHHHHHC--CCCE
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCeEEC-------C-CChhhHHHHHHHHhhC--CCCE
Confidence 3466789999987 46788773 3567775 4445678877741 1 1123566778888877 8999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
++++.+.+..|+.++++.| +|.|++--..+
T Consensus 277 a~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~ 307 (422)
T 3tji_A 277 ALGELFNNPAEWHDLIVNRRIDFIRCHVSQI 307 (422)
T ss_dssp EECTTCCSGGGTHHHHHTTCCSEECCCGGGG
T ss_pred EEeCCcCCHHHHHHHHhcCCCCEEecCcccc
Confidence 9999999999999999987 89988854443
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.18 Score=47.23 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHHHHHHc--CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 237 EDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 237 e~a~~~~~~--Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
+.+..+.+. |+|.+.++...|. ....++.+.++++..+ ++||++ |++.+.+|+.++..+|||+|.++
T Consensus 121 ~~~~~l~~~~~g~~~i~i~~~~g~----~~~~~~~i~~lr~~~~-~~~vi~-g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 121 EQLEQILEAIPQVKYICLDVANGY----SEHFVEFVKDVRKRFP-QHTIMA-GNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTT----BHHHHHHHHHHHHHCT-TSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhccCCCCEEEEEecCCC----cHHHHHHHHHHHHhcC-CCeEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 335556666 9999887532221 1235677888887763 588885 77899999999999999999885
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=94.01 E-value=3.3 Score=37.22 Aligned_cols=184 Identities=16% Similarity=0.142 Sum_probs=103.2
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hcCCCceeEEeeecCChHHHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQ 140 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~-------~~~~~~~~~QLy~~~d~~~~~~ 140 (323)
|.++.|+. .+-.+.++-..+++-.-+.|+... .++ +.+.+.||-. +...+ .+...- ..+-+...+
T Consensus 5 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg-~~~t~~ai~ 81 (286)
T 2r91_A 5 APVITTFR-GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR-VIVQVA-SLNADEAIA 81 (286)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECC-CSSHHHHHH
T ss_pred EeEecCcC-CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-EEEeeC-CCCHHHHHH
Confidence 55667775 543444444577777777887544 333 3345665532 23334 555543 235566677
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHH
Q 020636 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (323)
Q Consensus 141 ~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 220 (323)
+.+.++++|++++.+. +|..-+ + + ...+ ..+..+.+
T Consensus 82 la~~A~~~Gadavlv~--~P~y~~-----------~--------------~----s~~~-------------l~~~f~~v 117 (286)
T 2r91_A 82 LAKYAESRGAEAVASL--PPYYFP-----------R--------------L----SERQ-------------IAKYFRDL 117 (286)
T ss_dssp HHHHHHHTTCSEEEEC--CSCSST-----------T--------------C----CHHH-------------HHHHHHHH
T ss_pred HHHHHHhcCCCEEEEc--CCcCCC-----------C--------------C----CHHH-------------HHHHHHHH
Confidence 8899999999998864 343200 0 0 0011 12345566
Q ss_pred HHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 221 QTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 221 ~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
.+.+++|+++=.+ .+++...+ .-.+-+|.-+. .++..+.++.+ .+++..|+ +|- -.
T Consensus 118 a~a~~lPiilYn~P~~tg~~l~~~~~~~--~pnivgiKds~----------gd~~~~~~~~~-~~~~f~v~-~G~---d~ 180 (286)
T 2r91_A 118 CSAVSIPVFLYNYPAAVGRDVDARAAKE--LGCIRGVKDTN----------ESLAHTLAYKR-YLPQARVY-NGS---DS 180 (286)
T ss_dssp HHHCSSCEEEEECHHHHSSCCCHHHHHH--HSCEEEEEECC----------SCHHHHHHHHH-HCTTSEEE-ECC---GG
T ss_pred HHhcCCCEEEEeChhhcCCCCCHHHHHh--cCCEEEEEeCC----------CCHHHHHHHHh-cCCCEEEE-Ecc---HH
Confidence 6778899988643 56776665 22232332221 23444555555 54456554 442 24
Q ss_pred HHHHHHHcCCCEEEEccccccCcchhh
Q 020636 294 DVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-++.++.+|+++++-+..=+....+.+
T Consensus 181 ~~~~~l~~G~~G~is~~an~~P~~~~~ 207 (286)
T 2r91_A 181 LVFASFAVRLDGVVASSANYLPELLAG 207 (286)
T ss_dssp GHHHHHHTTCSEECCGGGTTCHHHHHH
T ss_pred HHHHHHHcCCCEEEecHHHhCHHHHHH
Confidence 467889999999988876544444433
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=93.99 E-value=1.3 Score=41.90 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
++.+.+.++..++++ +-.+.+.+.+..+.+.|+|.+.+... ....+.+|.++.+ . ..|||.+-|..|-+
T Consensus 103 ~~~L~~~~~~~Gi~~-~stpfD~~svd~l~~~~vd~~KIgS~-------~~~N~pLL~~va~-~--gKPViLStGmaTl~ 171 (385)
T 1vli_A 103 ILPLLDYCREKQVIF-LSTVCDEGSADLLQSTSPSAFKIASY-------EINHLPLLKYVAR-L--NRPMIFSTAGAEIS 171 (385)
T ss_dssp HHHHHHHHHHTTCEE-ECBCCSHHHHHHHHTTCCSCEEECGG-------GTTCHHHHHHHHT-T--CSCEEEECTTCCHH
T ss_pred HHHHHHHHHHcCCcE-EEccCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh-c--CCeEEEECCCCCHH
Confidence 445666666667754 55678899999999999999998431 1345777877764 3 78999999999999
Q ss_pred HHHHHHH----cCCCEEEE
Q 020636 294 DVFKALA----LGASGIFV 308 (323)
Q Consensus 294 di~kal~----lGAd~V~i 308 (323)
++..|+. .|..-|.+
T Consensus 172 Ei~~Ave~i~~~Gn~~iiL 190 (385)
T 1vli_A 172 DVHEAWRTIRAEGNNQIAI 190 (385)
T ss_dssp HHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHHHCCCCcEEE
Confidence 9988775 47744555
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.085 Score=47.78 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=38.7
Q ss_pred cCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 212 LSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
...+.++++++.+ ++|+++. ||.+.|+++.+.++|||+|++.+
T Consensus 212 v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 212 VPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 4578899999999 8999999 67999999999999999999954
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.046 Score=47.92 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHH---HHhcCCCeEEE-----ecCCCCH--------HHHHH
Q 020636 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV---KATQGRIPVFL-----DGGVRRG--------TDVFK 297 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~---~~~~~~~pvia-----~GGI~~~--------~di~k 297 (323)
.+.+++..|.+.|||.|.+...- ...+..|++..+..++ +.+ ++||.+ .|++... .|+..
T Consensus 9 ~s~~~a~~A~~~GAdRIELc~~L--~~GGlTPS~g~i~~~~~~~~~~--~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~ 84 (224)
T 2bdq_A 9 ENLTDLTRLDKAIISRVELCDNL--AVGGTTPSYGVIKEANQYLHEK--GISVAVMIRPRGGNFVYNDLELRIMEEDILR 84 (224)
T ss_dssp ETTTTGGGCCTTTCCEEEEEBCG--GGTCBCCCHHHHHHHHHHHHHT--TCEEEEECCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCc--ccCCcCCCHHHHHHHHHhhhhc--CCceEEEECCCCCCCcCCHHHHHHHHHHHHH
Confidence 57888999999999999986531 1112346777888777 766 799887 4555554 47778
Q ss_pred HHHcCCCEEEEcc
Q 020636 298 ALALGASGIFVSI 310 (323)
Q Consensus 298 al~lGAd~V~iG~ 310 (323)
+.++|||+|++|-
T Consensus 85 ~~~~GadGvV~G~ 97 (224)
T 2bdq_A 85 AVELESDALVLGI 97 (224)
T ss_dssp HHHTTCSEEEECC
T ss_pred HHHcCCCEEEEee
Confidence 8889999999994
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.17 Score=45.82 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=57.8
Q ss_pred hcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC--------CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 223 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 223 ~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~--------~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
..+.|+++ .+...+.++.+.++|+++|.+.. .+|.. .....+.+.++++.+ ++|+++..++.+.++
T Consensus 19 ~~~~~~i~-~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~---~~~~~~~i~~i~~~~--~~Pvi~~~~~~~~~~ 92 (297)
T 2zbt_A 19 MFKGGVIM-DVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVA---RMSDPKIIKEIMAAV--SIPVMAKVRIGHFVE 92 (297)
T ss_dssp GGTTEEEE-EESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCC---CCCCHHHHHHHHTTC--SSCEEEEEETTCHHH
T ss_pred HhhCCeee-eechHHHHHHHHHCCCcEEEeccccchHHHhhcCCc---cCCCHHHHHHHHHhc--CCCeEEEeccCCHHH
Confidence 34567765 55668889999999999997721 11100 123466777777666 799999888889889
Q ss_pred HHHHHHcCCCEE
Q 020636 295 VFKALALGASGI 306 (323)
Q Consensus 295 i~kal~lGAd~V 306 (323)
+..++++|||+|
T Consensus 93 ~~~~~~aGad~v 104 (297)
T 2zbt_A 93 AMILEAIGVDFI 104 (297)
T ss_dssp HHHHHHTTCSEE
T ss_pred HHHHHHCCCCEE
Confidence 999999999999
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.095 Score=47.00 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=48.1
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH----H------HHHHHHcCCCEEE
Q 020636 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----D------VFKALALGASGIF 307 (323)
Q Consensus 238 ~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~----d------i~kal~lGAd~V~ 307 (323)
-|+.+.++|+|+++.|. .-+..+++.++ +-.+++..||+-.. | +.+++.+|||.+.
T Consensus 149 ~A~~a~~~G~dGvV~s~-------------~e~~~ir~~~~-~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iV 214 (259)
T 3tfx_A 149 LAKMAKHSGADGVICSP-------------LEVKKLHENIG-DDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIV 214 (259)
T ss_dssp HHHHHHHTTCCEEECCG-------------GGHHHHHHHHC-SSSEEEECCCCCC-----------CHHHHHHTTCSEEE
T ss_pred HHHHHHHhCCCEEEECH-------------HHHHHHHhhcC-CccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEE
Confidence 36777889999998741 12344555554 33478899998643 2 7788999999999
Q ss_pred EccccccCcch
Q 020636 308 VSIMPCQCPLT 318 (323)
Q Consensus 308 iG~~~~~~~~~ 318 (323)
+||++...++-
T Consensus 215 vGr~I~~a~dp 225 (259)
T 3tfx_A 215 VGRPITLASDP 225 (259)
T ss_dssp ECHHHHTSSSH
T ss_pred EChHHhCCCCH
Confidence 99999887653
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.93 Score=42.96 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=63.3
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCC---HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~---~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
+.+.++.+|+.+ +.++.+.- ..+ .+-++.+.+.|++.|. +. ..+..++.+.++++.+ ++||.+
T Consensus 191 d~~~v~avR~a~G~~~~L~vDaN~~w~~~~~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa~ 260 (400)
T 3mwc_A 191 DVEPLQETRRAVGDHFPLWTDANSSFELDQWETFKAMDAAKCLFHE-------QP-LHYEALLDLKELGERI--ETPICL 260 (400)
T ss_dssp SHHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHHHGGGCCSCEE-------SC-SCTTCHHHHHHHHHHS--SSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEe-------CC-CChhhHHHHHHHHhhC--CCCEEE
Confidence 456778888877 46777762 122 3445566677877774 11 1123577888888877 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
+..+.+..|+.++++.| +|.|++--
T Consensus 261 dE~~~~~~~~~~~~~~~~~d~v~~k~ 286 (400)
T 3mwc_A 261 DESLISSRVAEFVAKLGISNIWNIKI 286 (400)
T ss_dssp STTCCSHHHHHHHHHTTCCSEEEECH
T ss_pred eCCcCCHHHHHHHHhcCCCCEEEEcc
Confidence 99999999999999987 89998853
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.72 Score=43.15 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=65.5
Q ss_pred CHHHHHHHHHhcC--CCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++.+|+.++ .++.+.. ..+.++| +.+.+.|++.|. +. ..+..++.+.++++.+ ++||.
T Consensus 174 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~iPia 243 (370)
T 1chr_A 174 DLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIE-------QP-VGRENTQALRRLSDNN--RVAIM 243 (370)
T ss_dssp HHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEEEEE-------CC-SCTTCHHHHHHHHHHS--CSEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CCcccHHHHHHHHhhC--CCCEE
Confidence 4567888998873 6888873 2445554 455566766663 11 1123567788888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
+++-+.+..|+.+++..| +|.|++--..+
T Consensus 244 ~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~ 273 (370)
T 1chr_A 244 ADESLSTLASAFDLARDRSVDVFSLKLCNM 273 (370)
T ss_dssp ESSSCCSHHHHHHHHTTTSCSEEEECTTTS
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEECcccc
Confidence 999999999999999986 89999854443
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.18 Score=48.18 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=66.5
Q ss_pred Cc-eeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhH
Q 020636 123 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (323)
Q Consensus 123 ~~-~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (323)
.| .++.|-+..+.+.+.++++.++++|+++|+++ ++.. .| -|+.. + . .. .+.-++.
T Consensus 269 ~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~-Ntt~--~r-~dl~~-~--------~----~~-----~GGlSG~- 325 (415)
T 3i65_A 269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIIS-NTTT--QI-NDIKS-F--------E----NK-----KGGVSGA- 325 (415)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEEC-CCBS--CC-CCCGG-G--------T----TC-----CSEEEEG-
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEe-CCCc--cc-ccccc-c--------c----cc-----cCCcCCc-
Confidence 46 68888776676678889999999999999875 1111 01 01100 0 0 00 0000000
Q ss_pred HHHhhccCCccCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 202 AYVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
......++.|+++++.+ ++||+.- ||.+.+||.+++.+|||+|.+.
T Consensus 326 ------a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIg 374 (415)
T 3i65_A 326 ------KLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLY 374 (415)
T ss_dssp ------GGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEES
T ss_pred ------cchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 01123567899999988 6898665 6899999999999999999883
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.37 Score=45.25 Aligned_cols=40 Identities=23% Similarity=0.136 Sum_probs=34.5
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~v 252 (323)
.++.++++++.+++||+.-|-.+.++|+.+++.| ||.|.+
T Consensus 281 ~~~~~~~i~~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~i 321 (365)
T 2gou_A 281 PVSFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGF 321 (365)
T ss_dssp CHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEC
T ss_pred cHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHCCCcceehh
Confidence 4667889999999999887655999999999998 999976
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.42 Score=41.76 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=35.4
Q ss_pred ccCHHHHHHHHHhc-----CCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 211 SLSWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 211 ~~~~~~i~~i~~~~-----~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
....+.++++|+.. +.|+.+-|.-+.+.+..+.++|||++++.
T Consensus 154 ~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 154 PEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAG 201 (230)
T ss_dssp GGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEEC
Confidence 34577888888877 78998887666799999999999999984
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.32 Score=46.50 Aligned_cols=156 Identities=13% Similarity=0.003 Sum_probs=91.9
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+++.+.+.++++.+.||+++=+.++.|..... ++..-. +.. .. +. .+...+. .......+.+
T Consensus 141 ~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~-----~g~~~~-~~~------~~--~~-~~~~p~~-~~~~~~~~~~ 204 (418)
T 3r4e_A 141 GSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDA-----YGVGRG-KLY------YE--PA-DASLPSV-TGWDTRKALN 204 (418)
T ss_dssp ESSHHHHHHHHHHHHHTTCSEEEEEECCTTC---------------------------------CCCCE-EEECHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCcccccc-----cccccc-ccc------cc--cc-ccccccc-ccccchhHHH
Confidence 4577877778888888999999988876531000 000000 000 00 00 0000000 0000000112
Q ss_pred cCHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.+|.+.. ..+.++| +.+.+.|++.|.- . ..+..++.+.++++.+ ++||
T Consensus 205 ~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~iPI 274 (418)
T 3r4e_A 205 YVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLED-------C-TPAENQEAFRLVRQHT--VTPL 274 (418)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEES-------C-SCCSSGGGGHHHHHHC--CSCE
T ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEEC-------C-CCccCHHHHHHHHhcC--CCCE
Confidence 2456789999987 46788773 3566665 4555778888741 1 0122456677888877 8999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
++++.+.+..|+.++++.| +|.|++--..+
T Consensus 275 a~dE~~~~~~~~~~~l~~~a~d~v~~k~~~~ 305 (418)
T 3r4e_A 275 AVGEIFNTIWDAKDLIQNQLIDYIRATVVGA 305 (418)
T ss_dssp EECTTCCSGGGTHHHHHTTCCSEECCCTTTT
T ss_pred EEcCCcCCHHHHHHHHHcCCCCeEecCcccc
Confidence 9999999999999999987 89988864443
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.69 Score=42.61 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCceeecCCCC--CCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHH
Q 020636 92 ATARAASAAGTIMTLSSWST--SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 169 (323)
Q Consensus 92 ~~a~aa~~~G~~~~vs~~s~--~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~ 169 (323)
..++.+.+.|..++...... .-++.+.+ .+-+.++.+ .+. +.++++++.|++.++++ .+..|
T Consensus 79 ~~~~~a~~~g~d~V~~~~g~p~~~i~~l~~-~g~~v~~~v---~~~----~~a~~~~~~GaD~i~v~--g~~~G------ 142 (332)
T 2z6i_A 79 DIVDLVIEEGVKVVTTGAGNPSKYMERFHE-AGIIVIPVV---PSV----ALAKRMEKIGADAVIAE--GMEAG------ 142 (332)
T ss_dssp HHHHHHHHTTCSEEEECSSCGGGTHHHHHH-TTCEEEEEE---SSH----HHHHHHHHTTCSCEEEE--CTTSS------
T ss_pred HHHHHHHHCCCCEEEECCCChHHHHHHHHH-cCCeEEEEe---CCH----HHHHHHHHcCCCEEEEE--CCCCC------
Confidence 56778888898887654331 12333433 233445444 222 34567788899988874 11100
Q ss_pred hhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCC
Q 020636 170 KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAA 248 (323)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad 248 (323)
+. .+ ...+|+.++++++.+++||++-| +.+.+++..++..|+|
T Consensus 143 --G~---------------------------------~g-~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GAd 186 (332)
T 2z6i_A 143 --GH---------------------------------IG-KLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGAE 186 (332)
T ss_dssp --EE---------------------------------CC-SSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCS
T ss_pred --CC---------------------------------CC-CccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCC
Confidence 00 00 12357788999998899998875 6779999999999999
Q ss_pred EEEEc
Q 020636 249 GIIVS 253 (323)
Q Consensus 249 ~i~vs 253 (323)
+|.++
T Consensus 187 gV~vG 191 (332)
T 2z6i_A 187 AVQVG 191 (332)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99984
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.85 Score=39.17 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..|+.++++++..++|+++-|..+.+++..+.++|+|+|.++
T Consensus 151 ~~~~~l~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vg 192 (221)
T 1yad_A 151 RGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVM 192 (221)
T ss_dssp CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEES
T ss_pred CCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEh
Confidence 568889999888889988876559999999999999999985
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.4 Score=45.52 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=64.6
Q ss_pred cCHHHHHHHHHhc--CCCEEEe--ccCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTIT--KLPILVK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK--~i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
...+.++.+|+.+ +.++.+. +..+.+++ +.+.+.|++.|.-- ..+..++.+.++.+.+ ++||
T Consensus 195 ~~~e~v~avRea~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPI 264 (410)
T 2qq6_A 195 AMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLWLEEP--------TPPENLDALAEVRRST--STPI 264 (410)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCTTCHHHHHHHHTTC--SSCE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCeEECC--------CChhhHHHHHHHHhhC--CCCE
Confidence 3467789999987 4677777 33567665 44556788876421 1123577888888776 7999
Q ss_pred EEecCCCCHHHHHHHHHcC-CCEEEE
Q 020636 284 FLDGGVRRGTDVFKALALG-ASGIFV 308 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lG-Ad~V~i 308 (323)
++++.+.+..++.+++..| +|.|++
T Consensus 265 a~dE~~~~~~~~~~~i~~~~~d~v~i 290 (410)
T 2qq6_A 265 CAGENVYTRFDFRELFAKRAVDYVMP 290 (410)
T ss_dssp EECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred EeCCCcCCHHHHHHHHHcCCCCEEec
Confidence 9999999999999999987 898887
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=93.76 E-value=1.4 Score=39.94 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=57.3
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||-.. ....-.++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|=|
T Consensus 155 T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~-~~p~Ld~~~L~~I~~~~--~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi 231 (286)
T 1gvf_A 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYS-KTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSCCS-SCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEeecCccccCcC-CCCccCHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHCCCeEEEE
Confidence 6789988777 79999999863 55332 11123678999999988 7999998865555 4588899999888888
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 232 ~Tdl 235 (286)
T 1gvf_A 232 ATEL 235 (286)
T ss_dssp CHHH
T ss_pred ChHH
Confidence 8754
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.27 Score=42.35 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=44.0
Q ss_pred HcCCCEEEEcCC-CCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 244 QAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 244 ~~Gad~i~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+..+|++.+... ||+. ..-+++.++.+.. . +.|+|.+||+ +++.+.+++..++.+|=+.+.+-..|
T Consensus 115 ~~~~d~~LlD~~~gGtG---~~fdW~~l~~~~~-~--~~p~~LAGGL-~peNV~~ai~~~p~gVDvsSGvE~~p 181 (203)
T 1v5x_A 115 DYPAQALLLDGKRPGSG---EAYPRAWAKPLLA-T--GRRVILAGGI-APENLEEVLALRPYALDLASGVEEAP 181 (203)
T ss_dssp GSSCSEEEEECSSTTSC---CCCCGGGGHHHHH-T--TSCEEECSSC-CSTTHHHHHHHCCSEEEESGGGEEET
T ss_pred hcCCCEEEEcCCCCCCC---CccCHHHHHhhhc-c--CCcEEEECCC-CHHHHHHHHhcCCCEEEeCCceecCC
Confidence 334899988764 3321 1223344444221 2 5799999999 67888888877999999998875433
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.49 Score=44.70 Aligned_cols=90 Identities=11% Similarity=-0.046 Sum_probs=63.4
Q ss_pred CHHHHHHHHHhc--CCCEE-Ee--ccCCHHHHH----HHHHcCC--CEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 213 SWKDVKWLQTIT--KLPIL-VK--GVLTAEDAR----IAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~-vK--~i~~~e~a~----~~~~~Ga--d~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
..+.++.+|+.+ +.++. +. +..+.++|. .+.+.|+ +.|. +. ..+..++.+.++++.+ ++
T Consensus 172 d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iE-------qP-~~~~d~~~~~~l~~~~--~i 241 (391)
T 3gd6_A 172 DEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIE-------SP-APRNDFDGLYQLRLKT--DY 241 (391)
T ss_dssp HHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEE-------CC-SCTTCHHHHHHHHHHC--SS
T ss_pred HHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceec-------CC-CChhhHHHHHHHHHHc--CC
Confidence 355678888886 35677 66 335677654 4455677 6663 11 1123578888888887 79
Q ss_pred eEEEecCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 020636 282 PVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQ 314 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~ 314 (323)
|| +..+.+..|+.++++.| +|.|++--..+|
T Consensus 242 PI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~~G 273 (391)
T 3gd6_A 242 PI--SEHVWSFKQQQEMIKKDAIDIFNISPVFIG 273 (391)
T ss_dssp CE--EEECCCHHHHHHHHHHTCCSEEEECHHHHT
T ss_pred Cc--CCCCCCHHHHHHHHHcCCCCEEEECchhcC
Confidence 99 88999999999999987 899998654443
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=4.3 Score=37.58 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=107.1
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hc-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~-------~~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+++-..+.|+..+ .++ +.+.+.||-. +. .+ -+.+...- ..+-+.
T Consensus 36 ~~alvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~e 114 (343)
T 2v9d_A 36 IPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTG-GTNARE 114 (343)
T ss_dssp CCEECCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-SSCHHH
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 5777888753332344444567777777887443 333 3345655532 22 22 35566654 245566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. +|..-. | ...+ ..+..
T Consensus 115 ai~la~~A~~~Gadavlv~--~P~Y~~-----------~-------------------s~~~-------------l~~~f 149 (343)
T 2v9d_A 115 TIELSQHAQQAGADGIVVI--NPYYWK-----------V-------------------SEAN-------------LIRYF 149 (343)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCSSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 7788899999999999865 243200 0 0011 12345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHH-HcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc---CCCeEEE
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAV-QAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFL 285 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~-~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~~pvia 285 (323)
+.|.+.+++||++=.+ .+++...++. +.. +-+|.-+. .++..+.++.+.++ ++..| .
T Consensus 150 ~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~~pnIvgiKdss----------gd~~~~~~l~~~~~~~~~~f~v-~ 218 (343)
T 2v9d_A 150 EQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTI----------DSVAHLRSMIHTVKGAHPHFTV-L 218 (343)
T ss_dssp HHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHHHCTTEEEEEECC----------SCHHHHHHHHHHHHHHCTTCEE-E
T ss_pred HHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHHhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCCCCEEE-E
Confidence 5666778899988643 5788887776 542 22222211 13444445554443 35555 4
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+| +-.-++.++.+|+++++-|..=+....+.+
T Consensus 219 ~G---~D~~~l~~l~~Ga~G~is~~anv~P~~~~~ 250 (343)
T 2v9d_A 219 CG---YDDHLFNTLLLGGDGAISASGNFAPQVSVN 250 (343)
T ss_dssp ES---SGGGHHHHHHTTCCEECCGGGTTCHHHHHH
T ss_pred EC---cHHHHHHHHHCCCCEEEeCHHHhHHHHHHH
Confidence 45 234477889999999988876554444433
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.76 Score=43.95 Aligned_cols=91 Identities=10% Similarity=-0.053 Sum_probs=67.2
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.+|.+.. ..+.++| +.+.+.|++.|.-- ..+..++.+.++++.+ ++||+
T Consensus 212 d~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP--------~~~~d~~~~~~l~~~~--~iPIa 281 (424)
T 3v3w_A 212 IPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMEDA--------VPAENQESFKLIRQHT--TTPLA 281 (424)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECC--------SCCSSTTHHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEECC--------CChHhHHHHHHHHhhC--CCCEE
Confidence 456789999987 46788773 3567765 45557788887521 0122456778888877 89999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
+++.+.+..|+.++++.| +|.|++--..+
T Consensus 282 ~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~ 311 (424)
T 3v3w_A 282 VGEVFNSIHDCRELIQNQWIDYIRTTIVHA 311 (424)
T ss_dssp ECTTCCSGGGTHHHHHTTCCSEECCCTTTT
T ss_pred EccCcCCHHHHHHHHHcCCCCeEeecchhc
Confidence 999999999999999987 89988864443
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=93.70 E-value=2.9 Score=37.57 Aligned_cols=40 Identities=33% Similarity=0.398 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.++|+.+.++|||.|++-. .++ +...+|.+.+ ++|+|.-|
T Consensus 176 i~rA~a~~eAGA~~ivlE~---------vp~-~~a~~It~~l--~iP~igIG 215 (275)
T 3vav_A 176 LRDARAVEEAGAQLIVLEA---------VPT-LVAAEVTREL--SIPTIGIG 215 (275)
T ss_dssp HHHHHHHHHHTCSEEEEES---------CCH-HHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHHHcCCCEEEecC---------CCH-HHHHHHHHhC--CCCEEEEc
Confidence 3668899999999999843 344 3778888888 89999865
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=93.59 E-value=2 Score=40.04 Aligned_cols=139 Identities=12% Similarity=0.085 Sum_probs=86.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHH--hhc--cCCCCccccccccccccCCCccccchhhHHHHhhc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI--KNR--FTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 207 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (323)
..+.+...++++.|+++|++++=...= ..+.+ ... |..+ . .+....+....
T Consensus 31 ~gs~e~a~~li~~ak~aGadavKfq~~------k~~tl~s~~~~~fq~~--------------~----~~~~~y~~~~~- 85 (349)
T 2wqp_A 31 EGSLKTAFEMVDAAYNAGAEVVKHQTH------IVEDEMSDEAKQVIPG--------------N----ADVSIYEIMER- 85 (349)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEEEC------CHHHHCCGGGGGCCCT--------------T----CSSCHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHhCCCEEeeeec------ccccccCcchhccccC--------------C----CCccHHHHHHH-
Confidence 457888899999999999998754321 22221 000 1100 0 01111111111
Q ss_pred cCCccCHHH---HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 208 IDRSLSWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 208 ~~~~~~~~~---i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
-.+.|+. +.+.++..++++ +-.+.+.+.+..+.+.|+|.+.+... ....+.+|.++.+ . ..|||
T Consensus 86 --~~l~~e~~~~L~~~~~~~Gi~~-~st~~d~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~-~--gkPvi 152 (349)
T 2wqp_A 86 --CALNEEDEIKLKEYVESKGMIF-ISTLFSRAAALRLQRMDIPAYKIGSG-------ECNNYPLIKLVAS-F--GKPII 152 (349)
T ss_dssp --HCCCHHHHHHHHHHHHHTTCEE-EEEECSHHHHHHHHHHTCSCEEECGG-------GTTCHHHHHHHHT-T--CSCEE
T ss_pred --hCCCHHHHHHHHHHHHHhCCeE-EEeeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh-c--CCeEE
Confidence 1244554 445555567654 55678899999999999999998431 1345777877764 3 78999
Q ss_pred EecCCCCHHHHHHHHH----cCCCEEEE
Q 020636 285 LDGGVRRGTDVFKALA----LGASGIFV 308 (323)
Q Consensus 285 a~GGI~~~~di~kal~----lGAd~V~i 308 (323)
.+-|..|-+++..|.. .|.+.+.+
T Consensus 153 LstGmat~~Ei~~Ave~i~~~G~~iiLl 180 (349)
T 2wqp_A 153 LSTGMNSIESIKKSVEIIREAGVPYALL 180 (349)
T ss_dssp EECTTCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999987764 47755444
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=93.57 E-value=3.9 Score=36.87 Aligned_cols=189 Identities=18% Similarity=0.160 Sum_probs=109.5
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hc-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~-------~~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-. -.+.++-..+.+-.-+.|+...+ + ++.+.+.||-. +. .+ -+.+.... ..+-+.
T Consensus 8 ~~a~vTPf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 85 (292)
T 3daq_A 8 GVALTTPFTNN-KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTG-TNDTEK 85 (292)
T ss_dssp EEECCCCEETT-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHH
T ss_pred EEeeecCcCCC-CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHH
Confidence 35566776433 23444445777777788874443 2 33445666532 22 22 35666653 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. .|.... | ...+ ..+..
T Consensus 86 ai~la~~a~~~Gadavlv~--~P~y~~-----------~-------------------~~~~-------------l~~~f 120 (292)
T 3daq_A 86 SIQASIQAKALGADAIMLI--TPYYNK-----------T-------------------NQRG-------------LVKHF 120 (292)
T ss_dssp HHHHHHHHHHHTCSEEEEE--CCCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC--CCCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 7788899999999999875 243200 0 0011 12345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC-CCeEEEecCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGV 289 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~~pvia~GGI 289 (323)
+.+.+.+++|+++=.+ .+++...++.+.. ..+-+=-. ..++..+.++.+..++ +..|+ +|.
T Consensus 121 ~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiK~s--------sgd~~~~~~~~~~~~~~~f~v~-~G~- 189 (292)
T 3daq_A 121 EAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHP-YIVALKDA--------TNDFEYLEEVKKRIDTNSFALY-SGN- 189 (292)
T ss_dssp HHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEEEC--------CCCHHHHHHHHTTSCTTTSEEE-ESC-
T ss_pred HHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcCC-CEEEEEeC--------CCCHHHHHHHHHHCCCCCEEEE-ECC-
Confidence 5666777899988743 6788888877632 22222111 1235556666666654 45554 343
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-.-++.++.+||++++-+..=+....+.+
T Consensus 190 --d~~~~~~l~~G~~G~is~~~n~~P~~~~~ 218 (292)
T 3daq_A 190 --DDNVVEYYQRGGQGVISVIANVIPKEFQA 218 (292)
T ss_dssp --GGGHHHHHHTTCCEEEESGGGTCHHHHHH
T ss_pred --HHHHHHHHhcCCCEEEeCHHHhhHHHHHH
Confidence 23477889999999998876554444443
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=93.56 E-value=2.2 Score=38.10 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
++|+.+.++|||.|++-. .+ .+...++.+.+ ++|+|.-|
T Consensus 165 ~rA~a~~eAGA~~ivlE~---------vp-~~~a~~it~~l--~iP~igIG 203 (264)
T 1m3u_A 165 SDALALEAAGAQLLVLEC---------VP-VELAKRITEAL--AIPVIGIG 203 (264)
T ss_dssp HHHHHHHHHTCCEEEEES---------CC-HHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHHCCCcEEEEec---------CC-HHHHHHHHHhC--CCCEEEeC
Confidence 568899999999999843 23 36777888888 79999866
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.91 Score=38.46 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
..|+.++++++..++|+++-|-.+++++..+.++|+|+|.++.
T Consensus 149 ~~~~~l~~l~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs 191 (215)
T 1xi3_A 149 IGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVIS 191 (215)
T ss_dssp CHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESH
T ss_pred cCHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHcCCCEEEEhH
Confidence 4688899998888999998876669999999999999999853
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.3 Score=44.26 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.++.++++++.+++||+.- |+.+.+++..++++|||+|.+.
T Consensus 229 ~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg 270 (311)
T 1ep3_A 229 ALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVG 270 (311)
T ss_dssp HHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 3577888998889999876 5689999999999999999884
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=93.47 E-value=2.7 Score=38.07 Aligned_cols=187 Identities=14% Similarity=0.125 Sum_probs=105.2
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHH-------hc-CC-CceeEEeeecCChHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNVV 138 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~-------~~-~~-~~~~~QLy~~~d~~~~ 138 (323)
|.++.|+ -.+-.+.++-..+++-.-+.|+..++ + ++.+.+.||-. +. .+ -+.+...- ..+-+..
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 84 (297)
T 2rfg_A 7 IAMITPF-INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAG-SNNPVEA 84 (297)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccC-CCCHHHH
Confidence 4556666 33323444445777777778875543 3 23445665532 22 22 35566654 2355666
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
.++.+.++++|++++.+. +|.... | ...+ ..+..+
T Consensus 85 i~la~~A~~~Gadavlv~--~P~y~~-----------~-------------------s~~~-------------l~~~f~ 119 (297)
T 2rfg_A 85 VRYAQHAQQAGADAVLCV--AGYYNR-----------P-------------------SQEG-------------LYQHFK 119 (297)
T ss_dssp HHHHHHHHHHTCSEEEEC--CCTTTC-----------C-------------------CHHH-------------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCCCCC-----------C-------------------CHHH-------------HHHHHH
Confidence 778899999999999864 343200 0 0011 123455
Q ss_pred HHHHhcCCCEEEecc-------CCHHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 219 WLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 219 ~i~~~~~~pv~vK~i-------~~~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
.+.+.+++|+++=.+ .+++...++.+.. +-+|.-+. .++..+.++.+..+++..| .+|.
T Consensus 120 ~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKds~----------gd~~~~~~~~~~~~~~f~v-~~G~-- 186 (297)
T 2rfg_A 120 MVHDAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVKDAT----------TDLARISRERMLINKPFSF-LSGD-- 186 (297)
T ss_dssp HHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECS----------CCTTHHHHHHTTCCSCCEE-EESC--
T ss_pred HHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCEEE-EeCc--
Confidence 666778899988643 5788887776532 22222211 1233344555444434554 4452
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-.-++.++.+|+++++-|..=+....+.+
T Consensus 187 -d~~~l~~l~~G~~G~is~~an~~P~~~~~ 215 (297)
T 2rfg_A 187 -DMTAIAYNASGGQGCISVSANIAPALYGQ 215 (297)
T ss_dssp -GGGHHHHHHTTCCEEEESGGGTCHHHHHH
T ss_pred -HHHHHHHHHCCCCEEEecHHHhhHHHHHH
Confidence 23467889999999999876555544443
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=93.34 E-value=4.4 Score=36.96 Aligned_cols=188 Identities=13% Similarity=0.109 Sum_probs=106.9
Q ss_pred cceEECcc-cccccCCcHHHHHHHHHHHHcCCceee--c---CCCCCCHHHHHh-------c-CC-CceeEEeeecCChH
Q 020636 72 MPIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRN 136 (323)
Q Consensus 72 ~Pi~iaPm-~~~~l~~~~~e~~~a~aa~~~G~~~~v--s---~~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~ 136 (323)
.|.++.|+ .-.+-.+.++-..+++-..+.|+...+ + ++.+.+.||-.+ . .+ -+.+...- . +-.
T Consensus 16 ~~a~vTPF~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~-st~ 93 (314)
T 3d0c_A 16 SGINIVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIG-Y-SVD 93 (314)
T ss_dssp EECCCCCBCTTTCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-S-SHH
T ss_pred EEeeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCC-c-CHH
Confidence 35566776 433223444445777777778875543 2 234456666322 2 22 35666664 3 666
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 137 ~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
...++.+.++++|++++.+. +|..-. | ...+ ..+.
T Consensus 94 ~ai~la~~A~~~Gadavlv~--~P~y~~-----------~-------------------s~~~-------------l~~~ 128 (314)
T 3d0c_A 94 TAIELGKSAIDSGADCVMIH--QPVHPY-----------I-------------------TDAG-------------AVEY 128 (314)
T ss_dssp HHHHHHHHHHHTTCSEEEEC--CCCCSC-----------C-------------------CHHH-------------HHHH
T ss_pred HHHHHHHHHHHcCCCEEEEC--CCCCCC-----------C-------------------CHHH-------------HHHH
Confidence 67788899999999999864 343200 0 0011 1234
Q ss_pred HHHHHHhcCCCEEEe---ccCCHHHHHHHHHcC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC--CCeEEEecCCC
Q 020636 217 VKWLQTITKLPILVK---GVLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVR 290 (323)
Q Consensus 217 i~~i~~~~~~pv~vK---~i~~~e~a~~~~~~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~~pvia~GGI~ 290 (323)
.+.+.+.+++||++= ++.+++...++.+.. +-+|.-+. .++..+.++.+.+++ +..| .+|-
T Consensus 129 f~~va~a~~lPiilYn~tg~l~~~~~~~La~~pnIvgiKdss----------gd~~~~~~~~~~~~~~~~f~v-~~G~-- 195 (314)
T 3d0c_A 129 YRNIIEALDAPSIIYFKDAHLSDDVIKELAPLDKLVGIKYAI----------NDIQRVTQVMRAVPKSSNVAF-ICGT-- 195 (314)
T ss_dssp HHHHHHHSSSCEEEEECCTTSCTHHHHHHTTCTTEEEEEECC----------CCHHHHHHHHHHSCGGGCCEE-EETT--
T ss_pred HHHHHHhCCCCEEEEeCCCCcCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCCCEEE-EEeC--
Confidence 556677788999884 236677777775432 11222211 234555566665543 4444 4452
Q ss_pred CHH-HHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGT-DVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~-di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-. -++.++.+|+++++-+..=+....+.+
T Consensus 196 -d~~~~~~~l~~G~~G~is~~an~~P~~~~~ 225 (314)
T 3d0c_A 196 -AEKWAPFFYHAGAVGFTSGLVNVFPQKSFA 225 (314)
T ss_dssp -HHHHHHHHHHHTCCEEEESGGGTCHHHHHH
T ss_pred -cHHHHHHHHHcCCCEEEecHHHhhHHHHHH
Confidence 33 578889999999998876554444433
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.2 Score=44.75 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.++++|+.++.|+.+. |+.+++++.. +..|||+++|.
T Consensus 195 ~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVG 234 (262)
T 2ekc_A 195 KKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVG 234 (262)
T ss_dssp HHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEEC
T ss_pred HHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEEC
Confidence 467889999889999998 5678999999 78899999994
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.43 Score=43.84 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCCEEEeccCC--------HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 215 KDVKWLQTITKLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~--------~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
+.++++++.++.|+.+-...+ .+.++.+.+.|+|.|.++. +. + .+.+..+.+. .++|+..
T Consensus 57 ~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~--g~------p-~~~~~~l~~~---gi~vi~~ 124 (328)
T 2gjl_A 57 AEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAG--ND------P-GEHIAEFRRH---GVKVIHK 124 (328)
T ss_dssp HHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEE--SC------C-HHHHHHHHHT---TCEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcC--CC------c-HHHHHHHHHc---CCCEEee
Confidence 457778877777776664432 3668889999999998742 21 1 3455555442 5788854
Q ss_pred cCCCCHHHHHHHHHcCCCEEEE
Q 020636 287 GGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~i 308 (323)
+.+..++.++...|||++.+
T Consensus 125 --v~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 125 --CTAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp --ESSHHHHHHHHHTTCSEEEE
T ss_pred --CCCHHHHHHHHHcCCCEEEE
Confidence 88999999999999999999
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.57 Score=43.99 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=63.5
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHH----HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e----~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.+.. ..+.+ -++.+.+.|++.|.- . ..+..++.+.++++.+ .+||.
T Consensus 177 d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq-------P-~~~~d~~~~~~l~~~~--~ipIa 246 (377)
T 3my9_A 177 ELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFIEQ-------P-VPRRHLDAMAGFAAAL--DTPIL 246 (377)
T ss_dssp HHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCEEC-------C-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEEEC-------C-CCccCHHHHHHHHHhC--CCCEE
Confidence 355688888877 46777773 23333 355666778887741 1 1123577888888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
+++-+.+..|+.++++.| +|.|++--
T Consensus 247 ~dE~~~~~~~~~~~i~~~~~d~v~~k~ 273 (377)
T 3my9_A 247 ADESCFDAVDLMEVVRRQAADAISVKI 273 (377)
T ss_dssp ESTTCSSHHHHHHHHHHTCCSEEECCH
T ss_pred ECCccCCHHHHHHHHHcCCCCEEEecc
Confidence 999999999999999987 89888743
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.63 Score=39.79 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=30.8
Q ss_pred HHHHHHHHHhc-----CCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~-----~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
++.++++++.. +.|+++-|..+++++..+.++|+|+++|+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~~~~~Gad~vvvG 198 (220)
T 2fli_A 154 LEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAG 198 (220)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHhcCCCceEEEECcCCHHHHHHHHHcCCCEEEEC
Confidence 35567777655 68887776656888888999999999994
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.88 Score=41.52 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC-C----CCCCCCcchH----HHHHHHHHHhcCCCeEEEe
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A----RQLDYVPATI----MALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g-g----~~~~~~~~~~----~~l~~i~~~~~~~~pvia~ 286 (323)
.++++++. +.|+++=++.+.-.|+.+.++|+|+|.+++.+ + ...|..+.++ ..+..|.+.+ ++||++|
T Consensus 13 ~lr~l~~~-~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~--~~PviaD 89 (298)
T 3eoo_A 13 KFRAAVAA-EQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNAT--NLPLLVD 89 (298)
T ss_dssp HHHHHHHH-SSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred HHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhc--CCeEEEE
Confidence 44555443 56888889999999999999999999997632 1 0235444443 3445555555 7999998
Q ss_pred c--CCCCHHHHH----HHHHcCCCEEEEc
Q 020636 287 G--GVRRGTDVF----KALALGASGIFVS 309 (323)
Q Consensus 287 G--GI~~~~di~----kal~lGAd~V~iG 309 (323)
. |..++.++. +..+.||++|-|=
T Consensus 90 ~d~Gyg~~~~v~~~v~~l~~aGaagv~iE 118 (298)
T 3eoo_A 90 IDTGWGGAFNIARTIRSFIKAGVGAVHLE 118 (298)
T ss_dssp CTTCSSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEEC
Confidence 7 554655554 3445899999883
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=1.2 Score=41.98 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=62.3
Q ss_pred CHHHHHHHHHhcC--CCEEEe--ccCCHHHHHH----HHH--cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCe
Q 020636 213 SWKDVKWLQTITK--LPILVK--GVLTAEDARI----AVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK--~i~~~e~a~~----~~~--~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~p 282 (323)
..+.++.+|+.++ .++.+- +..+.++|.+ +.+ .+...|. +. ..+..++.+.++++.+ .+|
T Consensus 172 d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l~~iE-------eP-~~~~d~~~~~~l~~~~--~iP 241 (379)
T 3r0u_A 172 DIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIE-------QP-VKYYDIKAMAEITKFS--NIP 241 (379)
T ss_dssp HHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCEEEEE-------CC-SCTTCHHHHHHHHHHC--SSC
T ss_pred HHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCcEEEE-------CC-CCcccHHHHHHHHhcC--CCC
Confidence 3557888888874 567766 3356777644 334 3444442 11 1123577888888877 799
Q ss_pred EEEecCCCCHHHHHHHHHcC-CCEEEEccc
Q 020636 283 VFLDGGVRRGTDVFKALALG-ASGIFVSIM 311 (323)
Q Consensus 283 via~GGI~~~~di~kal~lG-Ad~V~iG~~ 311 (323)
|.++.-+.+..|+.+++..| +|.|++--.
T Consensus 242 Ia~dE~~~~~~~~~~~i~~~a~d~v~~k~~ 271 (379)
T 3r0u_A 242 VVADESVFDAKDAERVIDEQACNMINIKLA 271 (379)
T ss_dssp EEESTTCSSHHHHHHHHHTTCCSEEEECHH
T ss_pred EEeCCccCCHHHHHHHHHcCCCCEEEECcc
Confidence 99999999999999999987 798888443
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.1 Score=47.83 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH----------HHHHHHHcCCCEE
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT----------DVFKALALGASGI 306 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~----------di~kal~lGAd~V 306 (323)
+-|+.+.++|+|+++.|.+ + +..+++.++ .-.+++.+||+-.. .+.+++.+|||.+
T Consensus 162 ~lA~~a~~~G~dGvV~s~~------------E-~~~IR~~~~-~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~i 227 (303)
T 3ru6_A 162 NFSKISYENGLDGMVCSVF------------E-SKKIKEHTS-SNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYI 227 (303)
T ss_dssp HHHHHHHHTTCSEEECCTT------------T-HHHHHHHSC-TTSEEEECCCCTTC--------CCSHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEECHH------------H-HHHHHHhCC-CccEEECCCcCcccCCcccccccCCHHHHHHcCCCEE
Confidence 3467788999999877431 1 345666664 34588899999332 3667788999999
Q ss_pred EEccccccCcch
Q 020636 307 FVSIMPCQCPLT 318 (323)
Q Consensus 307 ~iG~~~~~~~~~ 318 (323)
.+||++...++-
T Consensus 228 VvGr~I~~a~dp 239 (303)
T 3ru6_A 228 VVGRPIYKNENP 239 (303)
T ss_dssp EECHHHHTSSCH
T ss_pred EEChHHhCCCCH
Confidence 999999887654
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=93.16 E-value=1.1 Score=38.03 Aligned_cols=88 Identities=17% Similarity=0.082 Sum_probs=56.3
Q ss_pred HHHHHHHHHh-cCCCEEEec--cCCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHH-HHHHHHHHhcCCCeEEEe-c
Q 020636 214 WKDVKWLQTI-TKLPILVKG--VLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFLD-G 287 (323)
Q Consensus 214 ~~~i~~i~~~-~~~pv~vK~--i~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~-~l~~i~~~~~~~~pvia~-G 287 (323)
.+.++++|+. .+.|+.+-. ....+. ++.+.++|+|+|.+....+ ...+. ++..+. .. .++++++ -
T Consensus 41 ~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~------~~~~~~~~~~~~-~~--g~~~~v~~~ 111 (211)
T 3f4w_A 41 VNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD------VLTIQSCIRAAK-EA--GKQVVVDMI 111 (211)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHH-HH--TCEEEEECT
T ss_pred HHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC------hhHHHHHHHHHH-Hc--CCeEEEEec
Confidence 4678899988 478876543 234555 8999999999999943211 12222 333333 33 4666654 4
Q ss_pred CCCCH-HHHHHHHHcCCCEEEEcc
Q 020636 288 GVRRG-TDVFKALALGASGIFVSI 310 (323)
Q Consensus 288 GI~~~-~di~kal~lGAd~V~iG~ 310 (323)
+..+. +.+.+++.+|+|.|.+..
T Consensus 112 ~~~t~~~~~~~~~~~g~d~i~v~~ 135 (211)
T 3f4w_A 112 CVDDLPARVRLLEEAGADMLAVHT 135 (211)
T ss_dssp TCSSHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcC
Confidence 56676 446777789999998753
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=93.13 E-value=0.064 Score=47.35 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=47.6
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH----------HHHHHHcCCCEEEE
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGIFV 308 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d----------i~kal~lGAd~V~i 308 (323)
+..+.+.|.++++.+. +-+.++++.++ ..+++++|||+-... ..+++..|||.+.+
T Consensus 148 a~~~~~~G~~g~v~~~-------------~~i~~lr~~~~-~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVv 213 (239)
T 1dbt_A 148 SKQAEESGLDGVVCSV-------------HEAKAIYQAVS-PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVV 213 (239)
T ss_dssp HHHHHHTTCSEEECCG-------------GGHHHHTTTSC-TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEE
T ss_pred HHHHHHhCCCEEEECH-------------HHHHHHHHhcC-CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEE
Confidence 3345678999876532 23344444443 468999999986544 46788999999999
Q ss_pred ccccccCcchhh
Q 020636 309 SIMPCQCPLTEK 320 (323)
Q Consensus 309 G~~~~~~~~~~~ 320 (323)
||.++..++..+
T Consensus 214 Gr~I~~a~dp~~ 225 (239)
T 1dbt_A 214 GRSITKAEDPVK 225 (239)
T ss_dssp CHHHHTSSCHHH
T ss_pred ChhhcCCCCHHH
Confidence 999988766443
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.22 Score=44.48 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HH---------HHHHHHcCCCEE
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TD---------VFKALALGASGI 306 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~d---------i~kal~lGAd~V 306 (323)
+-|+.+.++|+|++++|. .-+..+++.++.+. +++..||+-. .+ ..++++.|||.+
T Consensus 166 ~~A~~a~~aG~~GvV~sa-------------~e~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~i 231 (255)
T 3ldv_A 166 RLATLTKNAGLDGVVCSA-------------QEASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYL 231 (255)
T ss_dssp HHHHHHHHTTCSEEECCH-------------HHHHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEECH-------------HHHHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEE
Confidence 346677789999998742 13455666665333 7788899853 23 567889999999
Q ss_pred EEccccccCcchh
Q 020636 307 FVSIMPCQCPLTE 319 (323)
Q Consensus 307 ~iG~~~~~~~~~~ 319 (323)
.+||++...++-.
T Consensus 232 VvGr~I~~a~dp~ 244 (255)
T 3ldv_A 232 VIGRPITQAAHPE 244 (255)
T ss_dssp EECHHHHTCSCHH
T ss_pred EECHHHhCCCCHH
Confidence 9999998876543
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.15 Score=44.88 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
+.+.++++++.+ +.|+++. |+.++|+++.+. .|||+|+|.+
T Consensus 167 ~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGS 209 (228)
T 3vzx_A 167 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGN 209 (228)
T ss_dssp CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEECh
Confidence 688899999999 7999999 579999999998 7999999953
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=93.02 E-value=2.1 Score=38.52 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=45.4
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec--CCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 238 ~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G--GI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.++...++|||.|.+-+ .++.+.+.++.+.+ ++|+.... +.-+ +.+.-++|...|.+|..++
T Consensus 173 Ra~ay~eAGAd~i~~e~---------~~~~~~~~~i~~~~--~~P~n~~~~~~~~~---~~eL~~lGv~~v~~~~~~~ 236 (275)
T 2ze3_A 173 RGQAYADAGADGIFVPL---------ALQSQDIRALADAL--RVPLNVMAFPGSPV---PRALLDAGAARVSFGQSLM 236 (275)
T ss_dssp HHHHHHHTTCSEEECTT---------CCCHHHHHHHHHHC--SSCEEEECCTTSCC---HHHHHHTTCSEEECTTHHH
T ss_pred HHHHHHHCCCCEEEECC---------CCCHHHHHHHHHhc--CCCEEEecCCCCCC---HHHHHHcCCcEEEEChHHH
Confidence 36788899999998732 45678888999888 67876654 3334 3455579999999987654
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.92 Score=38.89 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=36.1
Q ss_pred cCHHHHHHHHHhcC-CCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..|+.++++++..+ +|+++-|-.+++++..+.++|+|+|.++
T Consensus 158 ~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vg 200 (227)
T 2tps_A 158 QGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMI 200 (227)
T ss_dssp CTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEES
T ss_pred cCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEh
Confidence 46888999998887 9998887666899999999999999985
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=92.98 E-value=1.1 Score=41.97 Aligned_cols=87 Identities=24% Similarity=0.236 Sum_probs=59.3
Q ss_pred CHHHHHHHHHhc-CCCEEEec--cCCHHH---HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 213 SWKDVKWLQTIT-KLPILVKG--VLTAED---ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~--i~~~e~---a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
..+.++.+|+.+ +.++.+.. ..+.++ ++.+.+.|++.|. +. ..+..++.+.++.+.+ ++||.++
T Consensus 176 d~~~v~avr~a~~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ipIa~d 245 (375)
T 1r0m_A 176 DVQPVRATREAFPDIRLTVDANSAYTLADAGRLRQLDEYDLTYIE-------QP-LAWDDLVDHAELARRI--RTPLCLD 245 (375)
T ss_dssp SHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHTTGGGCCSCEE-------CC-SCTTCSHHHHHHHHHC--SSCEEES
T ss_pred HHHHHHHHHHHcCCCeEEEeCCCCCCHHHHHHHHHHHhCCCcEEE-------CC-CCcccHHHHHHHHHhC--CCCEEec
Confidence 345677777766 45666662 223333 3334456777664 11 1123567778888777 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 287 GGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 287 GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
+.+.+..|+.+++..| +|.|++=
T Consensus 246 E~~~~~~~~~~~i~~~~~d~v~ik 269 (375)
T 1r0m_A 246 ESVASASDARKALALGAGGVINLK 269 (375)
T ss_dssp TTCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CccCCHHHHHHHHHhCCCCEEEEC
Confidence 9999999999999987 8999984
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=92.90 E-value=1.3 Score=37.31 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=51.6
Q ss_pred HHHHHHHHHhc-CCCEEE--eccCC-HHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE-ec
Q 020636 214 WKDVKWLQTIT-KLPILV--KGVLT-AED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-DG 287 (323)
Q Consensus 214 ~~~i~~i~~~~-~~pv~v--K~i~~-~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia-~G 287 (323)
.+.++++++.+ +.|+++ | +.+ ++. ++.+.++|+|+|.++...+ ...+..+.+..+.. .+++.+ --
T Consensus 41 ~~~i~~l~~~~~~~~i~~~l~-~~di~~~~~~~a~~~Gad~v~vh~~~~------~~~~~~~~~~~~~~--g~~~gv~~~ 111 (207)
T 3ajx_A 41 LSVITAVKKAHPDKIVFADMK-TMDAGELEADIAFKAGADLVTVLGSAD------DSTIAGAVKAAQAH--NKGVVVDLI 111 (207)
T ss_dssp THHHHHHHHHSTTSEEEEEEE-ECSCHHHHHHHHHHTTCSEEEEETTSC------HHHHHHHHHHHHHH--TCEEEEECT
T ss_pred HHHHHHHHHhCCCCeEEEEEE-ecCccHHHHHHHHhCCCCEEEEeccCC------hHHHHHHHHHHHHc--CCceEEEEe
Confidence 34688888887 778875 6 345 666 8999999999999854322 11222222222222 344422 22
Q ss_pred CCCCHHHHH-HHHHcCCCEEEEc
Q 020636 288 GVRRGTDVF-KALALGASGIFVS 309 (323)
Q Consensus 288 GI~~~~di~-kal~lGAd~V~iG 309 (323)
...++.+.+ .+...|+|.|.+.
T Consensus 112 s~~~p~~~~~~~~~~g~d~v~~~ 134 (207)
T 3ajx_A 112 GIEDKATRAQEVRALGAKFVEMH 134 (207)
T ss_dssp TCSSHHHHHHHHHHTTCSEEEEE
T ss_pred cCCChHHHHHHHHHhCCCEEEEE
Confidence 334767744 4446799999443
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=5.4 Score=35.92 Aligned_cols=185 Identities=15% Similarity=0.075 Sum_probs=102.4
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hcCCCceeEEeeecCChHHHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQ 140 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~-------~~~~~~~~~QLy~~~d~~~~~~ 140 (323)
|.++.|+.-.+-.+.++-..+++-.-+.|+... .++ +.+.+.||-. +...+ .+...- ..+-+...+
T Consensus 5 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg-~~~t~~ai~ 82 (293)
T 1w3i_A 5 TPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVG-GLNLDDAIR 82 (293)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECC-CSCHHHHHH
T ss_pred EEeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC-EEEecC-CCCHHHHHH
Confidence 456677643322344444567777777887543 333 3345666532 22234 455543 235566677
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHH
Q 020636 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (323)
Q Consensus 141 ~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 220 (323)
+.+.++++|++++.+. .|..-.+ . ...+ ..+..+.+
T Consensus 83 la~~A~~~Gadavlv~--~P~y~~~-------------~----------------s~~~-------------l~~~f~~v 118 (293)
T 1w3i_A 83 LAKLSKDFDIVGIASY--APYYYPR-------------M----------------SEKH-------------LVKYFKTL 118 (293)
T ss_dssp HHHHGGGSCCSEEEEE--CCCSCSS-------------C----------------CHHH-------------HHHHHHHH
T ss_pred HHHHHHhcCCCEEEEc--CCCCCCC-------------C----------------CHHH-------------HHHHHHHH
Confidence 8888899999998865 2432000 0 0011 12345566
Q ss_pred HHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 221 QTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 221 ~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
.+.+++|+++=.+ .+++...+ .-.+-+|.-+. .++..+.++.+ .+++..| .+|- . .
T Consensus 119 a~a~~lPiilYn~P~~tg~~l~~~~~~~--~pnIvgiKds~----------gd~~~~~~~~~-~~~~f~v-~~G~-d--~ 181 (293)
T 1w3i_A 119 CEVSPHPVYLYNYPTATGKDIDAKVAKE--IGCFTGVKDTI----------ENIIHTLDYKR-LNPNMLV-YSGS-D--M 181 (293)
T ss_dssp HHHCSSCEEEEECHHHHSCCCCHHHHHH--HCCEEEEEECC----------SCHHHHHHHHH-HCTTSEE-EECC-S--T
T ss_pred HhhCCCCEEEEECchhhCcCCCHHHHHh--cCCEEEEEeCC----------CCHHHHHHHHh-cCCCEEE-EEcc-H--H
Confidence 6778899988643 56777666 22222332221 23444555555 5445555 4452 1 2
Q ss_pred HHHHHHHcCCCEEEEccccccCcchhh
Q 020636 294 DVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-++.++.+|+++++-+..=+....+.+
T Consensus 182 ~~~~~l~~G~~G~is~~an~~P~~~~~ 208 (293)
T 1w3i_A 182 LIATVASTGLDGNVAAGSNYLPEVTVT 208 (293)
T ss_dssp THHHHHHTTCCEEECGGGGTCHHHHHH
T ss_pred HHHHHHHcCCCEEEeCHHHhCHHHHHH
Confidence 467889999999998876555444443
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.69 E-value=1.3 Score=41.16 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=58.8
Q ss_pred CHHHHHHHHHhc-CCCEEEec--cCCHHH---HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 213 SWKDVKWLQTIT-KLPILVKG--VLTAED---ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~--i~~~e~---a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
..+.++.+|+.+ +.++.+-. ..+.++ ++.+.+.|++.|. +. ..+..++.+.++.+.+ ++||.++
T Consensus 169 d~~~v~avr~a~~~~~l~vDan~~~~~~~~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ipIa~d 238 (369)
T 2zc8_A 169 DYEVLKAVREAFPEATLTADANSAYSLANLAQLKRLDELRLDYIE-------QP-LAYDDLLDHAKLQREL--STPICLD 238 (369)
T ss_dssp SHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHGGGGGCCSCEE-------CC-SCTTCSHHHHHHHHHC--SSCEEES
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHHHHHHhCCCcEEE-------CC-CCcccHHHHHHHHhhC--CCCEEEc
Confidence 345667777766 45666652 223333 3344456777664 11 1123567777888777 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 287 GGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 287 GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
+-+.+..|+.+++..| +|.|++=
T Consensus 239 E~~~~~~~~~~~i~~~~~d~v~ik 262 (369)
T 2zc8_A 239 ESLTGAEKARKAIELGAGRVFNVK 262 (369)
T ss_dssp TTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred CccCCHHHHHHHHHhCCCCEEEEc
Confidence 9999999999999988 8999883
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=92.68 E-value=1.3 Score=40.31 Aligned_cols=89 Identities=21% Similarity=0.192 Sum_probs=60.0
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC-C---CCCCCCcchHH-H---HHHHHHHhcCCCeEEEec-
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A---RQLDYVPATIM-A---LEEVVKATQGRIPVFLDG- 287 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g-g---~~~~~~~~~~~-~---l~~i~~~~~~~~pvia~G- 287 (323)
++++.+. +.|+++=++.+.-.|+.+.++|+|+|.+++.+ + ...|..+-+++ . +..|.+.+ ++||++|.
T Consensus 7 lr~l~~~-~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~--~~PviaD~d 83 (290)
T 2hjp_A 7 LRAALDS-GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADID 83 (290)
T ss_dssp HHHHHHH-CCCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTC--SSCEEEECT
T ss_pred HHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEECC
Confidence 3444432 56888888999999999999999999998631 1 12344444443 3 33333333 79999986
Q ss_pred -CCCCHHHHH----HHHHcCCCEEEE
Q 020636 288 -GVRRGTDVF----KALALGASGIFV 308 (323)
Q Consensus 288 -GI~~~~di~----kal~lGAd~V~i 308 (323)
|..++.++. +.+..||++|-|
T Consensus 84 ~Gyg~~~~~~~~v~~l~~aGa~gv~i 109 (290)
T 2hjp_A 84 TGFGNAVNVHYVVPQYEAAGASAIVM 109 (290)
T ss_dssp TTTSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 555666554 345689999998
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=92.65 E-value=0.99 Score=41.09 Aligned_cols=89 Identities=24% Similarity=0.393 Sum_probs=61.5
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC-CC----CCCCCcchHH----HHHHHHHHhcCCCeEEEec
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g-g~----~~~~~~~~~~----~l~~i~~~~~~~~pvia~G 287 (323)
++.+.+. +.|+++=++.+.-.|+.+.++|+|+|.+++.+ +. ..|..+-+++ .+..|.+.+ +.||++|.
T Consensus 9 lr~l~~~-~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~--~~PviaD~ 85 (295)
T 1xg4_A 9 FRAALTK-ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLVDA 85 (295)
T ss_dssp HHHHHHH-SSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHC--CSCEEEEC
T ss_pred HHHHHhC-CCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEecC
Confidence 4444433 56888889999999999999999999998652 11 1344444443 444555555 78999987
Q ss_pred --CCC-CHHHHHH----HHHcCCCEEEE
Q 020636 288 --GVR-RGTDVFK----ALALGASGIFV 308 (323)
Q Consensus 288 --GI~-~~~di~k----al~lGAd~V~i 308 (323)
|.. ++..+.+ +++.||++|-|
T Consensus 86 d~Gyg~~~~~~~~~v~~l~~aGa~gv~i 113 (295)
T 1xg4_A 86 DIGFGSSAFNVARTVKSMIKAGAAGLHI 113 (295)
T ss_dssp TTCSSSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcccCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 554 5555543 45689999998
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=1.2 Score=41.59 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs 253 (323)
.|+.++++++..++||++-| +.+.+++..+++.|+|+|.++
T Consensus 196 ~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~l~~GAd~V~vG 237 (369)
T 3bw2_A 196 LLSLLAQVREAVDIPVVAAGGIMRGGQIAAVLAAGADAAQLG 237 (369)
T ss_dssp HHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 38889999988899998876 569999999999999999984
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=92.62 E-value=0.13 Score=45.32 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
..+.++++|+.+ +.|+++. ||.++|+|+.+.+ |||+|+|.+
T Consensus 173 ~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGS 215 (235)
T 3w01_A 173 DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGD 215 (235)
T ss_dssp CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECT
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECC
Confidence 578899999998 8999999 6899999999887 999999954
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.15 Score=45.13 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=36.3
Q ss_pred CHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.++++++.+ +.|+++. |+.++|+++.+.+ |||+|+|.
T Consensus 169 ~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVG 210 (240)
T 1viz_A 169 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVG 210 (240)
T ss_dssp CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEEC
T ss_pred hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEC
Confidence 578899999999 9999999 5799999999999 99999994
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=92.44 E-value=6.2 Score=35.91 Aligned_cols=185 Identities=17% Similarity=0.168 Sum_probs=107.9
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hcCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+.+-..+.|+..+ .++ +.+.+.+|-. +... -+.+...- ..+-..
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg-~~~t~~ 90 (311)
T 3h5d_A 12 ITAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVG-TNDTRD 90 (311)
T ss_dssp EEECCCCBCTTSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECC-CSSHHH
T ss_pred EEeeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHH
Confidence 4667778754333344555577777778887543 333 3345555532 2222 35666653 245666
Q ss_pred HHHHHHHHHHcCC-cEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 138 VAQLVRRAERAGF-KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 138 ~~~~~~~a~~~G~-~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
..++.+.++++|+ +++.+. +|.... | ...+ ..+.
T Consensus 91 ai~la~~A~~~Ga~davlv~--~P~y~~-----------~-------------------s~~~-------------l~~~ 125 (311)
T 3h5d_A 91 SIEFVKEVAEFGGFAAGLAI--VPYYNK-----------P-------------------SQEG-------------MYQH 125 (311)
T ss_dssp HHHHHHHHHHSCCCSEEEEE--CCCSSC-----------C-------------------CHHH-------------HHHH
T ss_pred HHHHHHHHHhcCCCcEEEEc--CCCCCC-----------C-------------------CHHH-------------HHHH
Confidence 7788899999997 998864 243200 0 0011 1234
Q ss_pred HHHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 217 VKWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
.+.+.+.+++|+++=.+ .+++...++.+.. ..+-+ .+.. ++..+.++.+..+++..|+ +|.
T Consensus 126 f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgi-------Kdss--d~~~~~~~~~~~~~~f~v~-~G~- 193 (311)
T 3h5d_A 126 FKAIADASDLPIIIYNIPGRVVVELTPETMLRLADHP-NIIGV-------KECT--SLANMAYLIEHKPEEFLIY-TGE- 193 (311)
T ss_dssp HHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHTST-TEEEE-------EECS--CHHHHHHHHHHCCSSCEEE-ECC-
T ss_pred HHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcCC-CEEEE-------EeCC--CHHHHHHHHHHcCCCEEEE-ECc-
Confidence 56677778899988743 5788888777642 22222 1222 4556666666665455554 442
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
-.-++.++.+|+++++-+..=+...
T Consensus 194 --d~~~l~~l~~Ga~G~is~~an~~P~ 218 (311)
T 3h5d_A 194 --DGDAFHAMNLGADGVISVASHTNGD 218 (311)
T ss_dssp --GGGHHHHHHHTCCEEEESTHHHHHH
T ss_pred --HHHHHHHHHcCCCEEEechhhhCHH
Confidence 2347788999999999886544333
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=92.42 E-value=1.1 Score=39.12 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=34.1
Q ss_pred CHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.++.++++|+.. +.++.+-|..+++.+..+.++|||.+++.
T Consensus 156 ~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 156 MMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp GHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEe
Confidence 466788888876 57788887778899999999999999884
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.42 E-value=6 Score=35.66 Aligned_cols=189 Identities=16% Similarity=0.157 Sum_probs=109.4
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hcCC--CceeEEeeecCChHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~-------~~~~--~~~~~QLy~~~d~~~~ 138 (323)
|.++.|+.-.+-.+.++-..+++-..+.|+... .++ +.+.+.||-. +... -+.+.+.- ..+-+..
T Consensus 9 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 87 (294)
T 3b4u_A 9 AALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVL-VDSIEDA 87 (294)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEEC-CSSHHHH
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CccHHHH
Confidence 556677643322344444577777778887544 333 3345665532 2222 34566654 2455667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
.++.+.++++|++++.+. .|..-. .+ ...+ ..+..+
T Consensus 88 i~la~~A~~~Gadavlv~--~P~y~~-------------------------~~----s~~~-------------l~~~f~ 123 (294)
T 3b4u_A 88 ADQSAEALNAGARNILLA--PPSYFK-------------------------NV----SDDG-------------LFAWFS 123 (294)
T ss_dssp HHHHHHHHHTTCSEEEEC--CCCSSC-------------------------SC----CHHH-------------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEEc--CCcCCC-------------------------CC----CHHH-------------HHHHHH
Confidence 788899999999998864 343200 00 0011 123455
Q ss_pred HHHHhc---CCCEEEecc-------CCHHHHHHHH-HcC--CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 219 WLQTIT---KLPILVKGV-------LTAEDARIAV-QAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 219 ~i~~~~---~~pv~vK~i-------~~~e~a~~~~-~~G--ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.+.+ ++|+++=.+ .+++...++. +.. +-+|.-+. .++..+.++.+..+ +..| .
T Consensus 124 ~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgiKds~----------gd~~~~~~~~~~~~-~f~v-~ 191 (294)
T 3b4u_A 124 AVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSS----------GNWSHTERLLKEHG-DLAI-L 191 (294)
T ss_dssp HHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEEEECC----------CCHHHHHHHHHHHT-TSEE-E
T ss_pred HHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEEEECC----------CCHHHHHHHHHhCC-CeEE-E
Confidence 667778 899988643 5788887776 542 22333221 23445556655554 5555 3
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+| +-..++.++.+|+++++-|..-+....+.++
T Consensus 192 ~G---~d~~~l~~l~~G~~G~is~~~n~~P~~~~~l 224 (294)
T 3b4u_A 192 IG---DERDLARGVRLGGQGAISGVANFLTQEVRAM 224 (294)
T ss_dssp EC---CHHHHHHHHHTTCCEEEESGGGTCHHHHHHH
T ss_pred Ec---cHHHHHHHHHCCCCEEEeCHHHhCHHHHHHH
Confidence 44 3455778899999999998776655555443
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.66 Score=43.73 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEE
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~v 252 (323)
|+.++++++.+++||+.-|-.++++|+.+++.| ||.|.+
T Consensus 288 ~~~~~~ik~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~i 327 (377)
T 2r14_A 288 EGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAF 327 (377)
T ss_dssp TTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCceEEee
Confidence 567888999999999887655899999999998 999987
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=92.30 E-value=4.7 Score=36.31 Aligned_cols=190 Identities=14% Similarity=0.165 Sum_probs=105.5
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ecC---CCCCCHHHHH-------hc-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSS---WSTSSVEEVA-------ST-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs~---~s~~~~eei~-------~~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-..+++-.-+.|+... .++ +.+.+.||-. +. .+ -+.+...- ..+-..
T Consensus 6 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ 84 (292)
T 2ojp_A 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAE 84 (292)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred eeeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHH
Confidence 3556677643322344444567776677787544 333 3345665532 22 22 34566653 235556
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+. +|..-. | ...+ ..+..
T Consensus 85 ai~la~~a~~~Gadavlv~--~P~y~~-----------~-------------------s~~~-------------l~~~f 119 (292)
T 2ojp_A 85 AISLTQRFNDSGIVGCLTV--TPYYNR-----------P-------------------SQEG-------------LYQHF 119 (292)
T ss_dssp HHHHHHHTTTSSCSEEEEE--CCCSSC-----------C-------------------CHHH-------------HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEC--CCCCCC-----------C-------------------CHHH-------------HHHHH
Confidence 6677888889999998865 243200 0 0011 12344
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.+++|+++=.+ .+++...++.+. ..|+-- .+.. .++..+.++.+..+++..|+ +|-
T Consensus 120 ~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~--pnivgi------K~s~-gd~~~~~~~~~~~~~~f~v~-~G~-- 187 (292)
T 2ojp_A 120 KAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKV--KNIIGI------XEAT-GNLTRVNQIKELVSDDFVLL-SGD-- 187 (292)
T ss_dssp HHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHTS--TTEEEC-------CCS-CCTHHHHHHHTTSCTTSBCE-ESC--
T ss_pred HHHHHhcCCCEEEEeCcchhccCCCHHHHHHHHcC--CCEEEE------eCCC-CCHHHHHHHHHhcCCCEEEE-ECc--
Confidence 5666777899988743 578888777653 333210 1111 23444555555444455553 442
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
-.-++.++.+|+++++-+..-+....+.+
T Consensus 188 -d~~~~~~l~~G~~G~is~~~n~~P~~~~~ 216 (292)
T 2ojp_A 188 -DASALDFMQYGGHGVISVTANVAARDMAQ 216 (292)
T ss_dssp -GGGHHHHHHTTCCEEEESGGGTCHHHHHH
T ss_pred -HHHHHHHHHCCCcEEEeCHHHhhHHHHHH
Confidence 23467889999999999877655554444
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.30 E-value=1 Score=40.78 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=60.6
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC-C----CCCCCCcchHH-H---HHHHHHHhcCCCeEEEec
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A----RQLDYVPATIM-A---LEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g-g----~~~~~~~~~~~-~---l~~i~~~~~~~~pvia~G 287 (323)
++++++. +.|+++=++.+.-.|+.+.++|+|+|.+++.+ + ...|..+-+++ . +..|.+.+ ++||++|.
T Consensus 13 lr~l~~~-~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~--~~PviaD~ 89 (287)
T 3b8i_A 13 FRALLDS-SRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVA--RLPVIADA 89 (287)
T ss_dssp HHHHHHS-SCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTC--SSCEEEEC
T ss_pred HHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEEEC
Confidence 3444332 56888888899999999999999999998652 1 12455555543 3 33333333 78999987
Q ss_pred --CCCCHHHHH----HHHHcCCCEEEE
Q 020636 288 --GVRRGTDVF----KALALGASGIFV 308 (323)
Q Consensus 288 --GI~~~~di~----kal~lGAd~V~i 308 (323)
|..++.++. +.+..||++|.|
T Consensus 90 d~Gyg~~~~~~~~v~~l~~aGa~gv~i 116 (287)
T 3b8i_A 90 DHGYGNALNVMRTVVELERAGIAALTI 116 (287)
T ss_dssp TTCSSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 455766654 345689999998
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=92.18 E-value=1 Score=42.35 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=61.3
Q ss_pred HHHHHHHHHhc-CCCEEEec--cCCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 214 WKDVKWLQTIT-KLPILVKG--VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 214 ~~~i~~i~~~~-~~pv~vK~--i~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
.+.++.+|+.+ +.++.+.. ..+.++ ++.+.+.|++.|. +. ..+..++.+.++++.+ ++||.++
T Consensus 180 ~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~iPIa~d 249 (385)
T 3i6e_A 180 IMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIE-------QP-VRAHHFELMARLRGLT--DVPLLAD 249 (385)
T ss_dssp HHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCEE-------CC-SCTTCHHHHHHHHTTC--SSCEEES
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC-CCcccHHHHHHHHHhC--CCCEEEe
Confidence 45677888876 45677662 234444 4556667877764 11 1123577788887766 7999999
Q ss_pred cCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 287 GGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 287 GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
.-+.+..|+.+++..| +|.|++--
T Consensus 250 E~~~~~~~~~~~~~~~~~d~v~~k~ 274 (385)
T 3i6e_A 250 ESVYGPEDMVRAAHEGICDGVSIKI 274 (385)
T ss_dssp TTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred CCcCCHHHHHHHHHcCCCCEEEecc
Confidence 9999999999999877 89888753
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.29 Score=43.23 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH----------HHHHHHcCCCEE
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGI 306 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d----------i~kal~lGAd~V 306 (323)
+-|+.+.++|+|++++|. .+ ...+++.++.+ .++...||+-..+ ..+++..|||.+
T Consensus 148 ~~A~~a~~~g~~GvV~s~------------~e-~~~ir~~~~~~-fl~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~l 213 (239)
T 3tr2_A 148 RMATLAKSAGLDGVVCSA------------QE-AALLRKQFDRN-FLLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYL 213 (239)
T ss_dssp HHHHHHHHHTCCEEECCH------------HH-HHHHHTTCCTT-SEEEECCBC----------CCBCHHHHHHHTCSEE
T ss_pred HHHHHHHHcCCCEEEECc------------hh-HHHHHHhcCCC-cEEECCCcCCCCCCcCcccccCCHHHHHHcCCCEE
Confidence 346777789999998742 11 23455545423 4778899985432 557888999999
Q ss_pred EEccccccCcchh
Q 020636 307 FVSIMPCQCPLTE 319 (323)
Q Consensus 307 ~iG~~~~~~~~~~ 319 (323)
.+||++...++-.
T Consensus 214 VvGr~I~~a~dp~ 226 (239)
T 3tr2_A 214 VIGRPITQSTDPL 226 (239)
T ss_dssp EECHHHHTSSSHH
T ss_pred EEChHHhCCCCHH
Confidence 9999998876543
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.81 Score=42.76 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=60.3
Q ss_pred HHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCc
Q 020636 114 VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (323)
Q Consensus 114 ~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
++.+++..+.|.++..- .+. +.+++++++|+++|+++- + |.| . + .
T Consensus 209 i~~lr~~~~~PvivK~v--~~~----e~A~~a~~~GaD~I~vsn---~-GG~-----~-~-----------d-------- 253 (352)
T 3sgz_A 209 LSLLQSITRLPIILKGI--LTK----EDAELAMKHNVQGIVVSN---H-GGR-----Q-L-----------D-------- 253 (352)
T ss_dssp HHHHHHHCCSCEEEEEE--CSH----HHHHHHHHTTCSEEEECC---G-GGT-----S-S-----------C--------
T ss_pred HHHHHHhcCCCEEEEec--CcH----HHHHHHHHcCCCEEEEeC---C-CCC-----c-c-----------C--------
Confidence 34455555567777753 233 456788999999998751 1 111 0 0 0
Q ss_pred cccchhhHHHHhhccCCccCHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
....+++.+.++++.+ ++||+.- |+.+.+|+.+++.+|||+|.+.
T Consensus 254 ---------------~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 254 ---------------EVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLG 301 (352)
T ss_dssp ---------------SSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred ---------------CCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 0112467777777776 6888776 6799999999999999999883
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.18 Score=44.43 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=36.3
Q ss_pred CHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.++++++.+ +.|+++. |+.++|+++.+.+ |||+|+|.
T Consensus 177 ~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 177 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred hHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 578899999999 9999999 5799999999999 99999984
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.64 Score=42.83 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCEEEeccC---C-HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 215 KDVKWLQTITKLPILVKGVL---T-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~---~-~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.++++++.++.|+.+.... . .+.++.+.+.|+|.|.++. +. + .+.+..+.+ . .++|+. ++.
T Consensus 67 ~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~--g~-----p--~~~~~~l~~-~--g~~v~~--~v~ 132 (326)
T 3bo9_A 67 KAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGA--GN-----P--TKYIRELKE-N--GTKVIP--VVA 132 (326)
T ss_dssp HHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEES--SC-----C--HHHHHHHHH-T--TCEEEE--EES
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECC--CC-----c--HHHHHHHHH-c--CCcEEE--EcC
Confidence 45777877777898887543 2 4667888899999998732 31 1 344444443 2 577775 588
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 020636 291 RGTDVFKALALGASGIFV 308 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~i 308 (323)
+.+++.++...|||++.+
T Consensus 133 s~~~a~~a~~~GaD~i~v 150 (326)
T 3bo9_A 133 SDSLARMVERAGADAVIA 150 (326)
T ss_dssp SHHHHHHHHHTTCSCEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999999
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=91.97 E-value=1.2 Score=40.34 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
-|.+.+++++++..+.|++++++. ++. | + .. ..+.+.
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~-Gtt--G---------------------------E-----~~--------~Ls~~E 54 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAV-GTT--G---------------------------E-----SP--------TLSHEE 54 (289)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEES-STT--T---------------------------T-----GG--------GSCHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEC-ccc--c---------------------------C-----hh--------hCCHHH
Confidence 478888999999989999998863 111 0 0 00 001111
Q ss_pred CHHHHHHHHHhc--CCCEEEecc-CC----HHHHHHHHHcCCCEEEEcC
Q 020636 213 SWKDVKWLQTIT--KLPILVKGV-LT----AEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~i-~~----~e~a~~~~~~Gad~i~vs~ 254 (323)
..+.++.+.+.. ++||++... .+ .+.++.+.++|+|++.+..
T Consensus 55 r~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 103 (289)
T 2yxg_A 55 HKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSIT 103 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 123455555554 478887743 23 3457888899999998754
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.79 Score=43.02 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=34.5
Q ss_pred CHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+|+.+.++++.+ ++||+.- |+.+.+|+.+++.+|||+|.+.
T Consensus 270 ~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 270 SFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALG 313 (368)
T ss_dssp HHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred hHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 467788888777 5898777 5799999999999999999884
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.59 Score=42.64 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=59.9
Q ss_pred CHHHHHHHHHhcCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCCCC-CCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg~~-~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
+.+.++++. .++.||++|-- .+++| ++.+.+.|.+-|++.-.|-+- ...-..++..++.+++ . .+||+.
T Consensus 144 n~~LLr~va-~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~y~~~~~~vdl~~i~~lk~-~--~~PV~~ 219 (298)
T 3fs2_A 144 QTDLLIAAA-RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAG-L--GAPVIF 219 (298)
T ss_dssp CHHHHHHHH-HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEECSSSCEECCTTHHHHHHT-T--TSCEEE
T ss_pred CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccCHHHHHHHHH-c--CCcEEE
Confidence 455666665 46899999954 36655 344556788888875443210 0011134666777776 6 799999
Q ss_pred e---------------cCCCCH--HHHHHHHHcCCCEEEEcccc
Q 020636 286 D---------------GGVRRG--TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 286 ~---------------GGI~~~--~di~kal~lGAd~V~iG~~~ 312 (323)
| ||-|.- .-...|+++|||+++|=+.+
T Consensus 220 D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~ 263 (298)
T 3fs2_A 220 DATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETHE 263 (298)
T ss_dssp EHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred cCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecC
Confidence 5 333322 22457889999999997765
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=91.89 E-value=0.77 Score=41.84 Aligned_cols=90 Identities=24% Similarity=0.245 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC-CC---CCCCCcchH----HHHHHHHHHhcCCCeEEEec
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR---QLDYVPATI----MALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g-g~---~~~~~~~~~----~~l~~i~~~~~~~~pvia~G 287 (323)
.++.+.+ -+.|+++=++.+.-.|+.+.++|+|+|.+|+.+ +. ..|...-++ ..+..|.+.+ ++||++|.
T Consensus 10 ~lr~l~~-~~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~--~~PviaD~ 86 (295)
T 1s2w_A 10 QLKQMLN-SKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDA 86 (295)
T ss_dssp HHHHHHH-SSSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEEC
T ss_pred HHHHHHh-CCCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC--CCCEEecC
Confidence 3444443 256888889999999999999999999998642 11 123333333 3344444444 79999986
Q ss_pred --CCCCHHHHH----HHHHcCCCEEEE
Q 020636 288 --GVRRGTDVF----KALALGASGIFV 308 (323)
Q Consensus 288 --GI~~~~di~----kal~lGAd~V~i 308 (323)
|..+..++. +.++.||++|-|
T Consensus 87 d~Gyg~~~~v~~~v~~l~~aGaagv~i 113 (295)
T 1s2w_A 87 DTGYGNFNNARRLVRKLEDRGVAGACL 113 (295)
T ss_dssp CSSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 555655554 345689999998
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=1.4 Score=42.32 Aligned_cols=91 Identities=10% Similarity=-0.066 Sum_probs=66.2
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHHHH----HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a~~----~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.+|.+.. ..+.++|.. +.+.|++.|.- . ..+..++.+.++++.+ ++||.
T Consensus 226 d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe-------P-~~~~d~~~~~~l~~~~--~iPIa 295 (440)
T 3t6c_A 226 IPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLED-------P-VAPENTEWLKMLRQQS--STPIA 295 (440)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEEC-------S-SCGGGGGGHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEEC-------C-CChhhHHHHHHHHhhc--CCCEE
Confidence 356788999987 46788873 356777644 44567777741 1 1123566778888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
++..+.+..|+.++++.| +|.|++--..+
T Consensus 296 ~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~ 325 (440)
T 3t6c_A 296 MGELFVNVNEWKPLIDNKLIDYIRCHISSI 325 (440)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCCGGGG
T ss_pred eCcccCCHHHHHHHHHcCCccceeechhhh
Confidence 999999999999999987 89888764444
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=2.2 Score=38.41 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=62.8
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHH----HHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~~pvi 284 (323)
+...++.+++. +-|+++=...+.-.|+.+.++|+|.|.+....+. ..|+.+.+++ ..+.+.+.+ ...+|+
T Consensus 5 t~~~lr~~k~~-g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~-~~~~vv 82 (275)
T 1o66_A 5 TVNTLQKMKAA-GEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGA-KNAMIV 82 (275)
T ss_dssp CHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-SSSEEE
T ss_pred CHHHHHHHHhC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhC-CCCeEE
Confidence 45566666553 4688888889999999999999999976432221 1344444553 233344444 145788
Q ss_pred EecCC----CCHHHHH----HHHHcCCCEEEE
Q 020636 285 LDGGV----RRGTDVF----KALALGASGIFV 308 (323)
Q Consensus 285 a~GGI----~~~~di~----kal~lGAd~V~i 308 (323)
+|=+. .++++++ +.+..||++|-|
T Consensus 83 aD~pfgsy~~s~~~a~~na~rl~kaGa~aVkl 114 (275)
T 1o66_A 83 SDLPFGAYQQSKEQAFAAAAELMAAGAHMVKL 114 (275)
T ss_dssp EECCTTSSSSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred EECCCCCccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 98554 3677777 477799999988
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=91.79 E-value=7.1 Score=35.66 Aligned_cols=192 Identities=13% Similarity=0.059 Sum_probs=105.8
Q ss_pred cceEECccc-ccccCCcHHHHHHHHHHHHcCCcee--ec---CCCCCCHHHHHh-------c-CC-CceeEEeeecCChH
Q 020636 72 MPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMT--LS---SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRN 136 (323)
Q Consensus 72 ~Pi~iaPm~-~~~l~~~~~e~~~a~aa~~~G~~~~--vs---~~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~ 136 (323)
.|-++.|+. -.+-.+.++-..+.+-.-+.|+..+ .+ ++.+.+.+|-.+ . .+ -+.+...- ..+-.
T Consensus 15 ~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~ 93 (318)
T 3qfe_A 15 WCPAVTFFDSKTDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVG-AHSTR 93 (318)
T ss_dssp EEECCCCEETTTTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECC-CSSHH
T ss_pred EEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHH
Confidence 355677764 3222344444567777777887543 33 234456665322 2 22 35666654 34566
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHH
Q 020636 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (323)
Q Consensus 137 ~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
...++.+.++++|++++.+. +|..-.+ | . ...+ ..+.
T Consensus 94 ~ai~la~~a~~~Gadavlv~--~P~y~~k----------p--~----------------~~~~-------------l~~~ 130 (318)
T 3qfe_A 94 QVLEHINDASVAGANYVLVL--PPAYFGK----------A--T----------------TPPV-------------IKSF 130 (318)
T ss_dssp HHHHHHHHHHHHTCSEEEEC--CCCC-------------C--C----------------CHHH-------------HHHH
T ss_pred HHHHHHHHHHHcCCCEEEEe--CCcccCC----------C--C----------------CHHH-------------HHHH
Confidence 67788899999999999864 2321000 0 0 0011 1234
Q ss_pred HHHHHHhcCCCEEEecc--------CCHHHHHHHHH-cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc-CCCeEEEe
Q 020636 217 VKWLQTITKLPILVKGV--------LTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLD 286 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i--------~~~e~a~~~~~-~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~~pvia~ 286 (323)
.+.+.+.+++|+++=.+ .+++...++.+ .. ..+-+=-. ..++..+.++.+.++ ++..|+ +
T Consensus 131 f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~~~p-nIvgiKds--------sgd~~~~~~~~~~~~~~~f~v~-~ 200 (318)
T 3qfe_A 131 FDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNP-NVVGVKLT--------CASVGKITRLAATLPPAAFSVF-G 200 (318)
T ss_dssp HHHHHHHCSSCEEEEECCC----CCCCHHHHHHHHHHCT-TEEEEEES--------SCCHHHHHHHHHHSCGGGCEEE-E
T ss_pred HHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHhhCC-CEEEEEeC--------CCCHHHHHHHHHhcCCCCEEEE-E
Confidence 55666777899887633 46777777776 43 33222111 123455556555542 244444 3
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
| +..-++.++++|+++++-+..=+....+.+
T Consensus 201 G---~d~~~l~~l~~G~~G~is~~an~~P~~~~~ 231 (318)
T 3qfe_A 201 G---QSDFLIGGLSVGSAGCIAAFANVFPKTVSK 231 (318)
T ss_dssp S---CGGGHHHHHHTTCCEEECGGGGTCHHHHHH
T ss_pred e---cHHHHHHHHHCCCCEEEecHHHhhHHHHHH
Confidence 3 224467889999999998876554444443
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=91.66 E-value=0.6 Score=42.49 Aligned_cols=97 Identities=26% Similarity=0.410 Sum_probs=58.3
Q ss_pred CHHHHHHHHHhcCCCEEEecc--CCHHHHH----HHHHcCCCEEEEcCCCCCCCCCCc--chHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITKLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i--~~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++++. .++.||++|.- .+++++. .+...|.+-+++.-.|++ ..... ..+..++.+++... ..||+
T Consensus 121 n~~Ll~~~a-~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~-~~y~~~~~dl~~i~~lk~~~~-~~pV~ 197 (292)
T 1o60_A 121 QTDLVEAMA-KTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTN-FGYDNLIVDMLGFSVMKKASK-GSPVI 197 (292)
T ss_dssp CHHHHHHHH-HTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE-CSTTCEECCTTHHHHHHHHTT-SCCEE
T ss_pred CHHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC-CCCCccccCHHHHHHHHhhCC-CCCEE
Confidence 455777776 57899999954 2666643 445688877766555542 11111 35556666666532 47999
Q ss_pred Ee-----------cCCCCH-----HHH-HHHHHcCCCEEEEcccc
Q 020636 285 LD-----------GGVRRG-----TDV-FKALALGASGIFVSIMP 312 (323)
Q Consensus 285 a~-----------GGI~~~-----~di-~kal~lGAd~V~iG~~~ 312 (323)
.| |+-..+ ..+ ..++++||++++|=+.|
T Consensus 198 ~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~ 242 (292)
T 1o60_A 198 FDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHP 242 (292)
T ss_dssp EEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEES
T ss_pred EECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEecC
Confidence 94 233334 233 36678999999998776
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=1.2 Score=40.34 Aligned_cols=98 Identities=19% Similarity=0.332 Sum_probs=60.4
Q ss_pred CHHHHHHHHHhcCCCEEEecc--CCHHH----HHHHHHcCCCEEEEcCCCCCC-CCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i--~~~e~----a~~~~~~Gad~i~vs~~gg~~-~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
+.+.++++. .++.||++|-- .+++| ++.+.+.|.+-|++.-.|.+- ...-..++..++.+++..+ .+||+.
T Consensus 123 n~~LLr~va-~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~-~~pV~~ 200 (285)
T 3sz8_A 123 QTDLVVAIA-KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTG-GCPVIF 200 (285)
T ss_dssp CHHHHHHHH-HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTT-SCCEEE
T ss_pred CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCC-CCCEEE
Confidence 455677765 46899999954 36655 455667899888875443211 0011134667777777652 389998
Q ss_pred ec---------------CCCCH--HHHHHHHHcCCCEEEEcccc
Q 020636 286 DG---------------GVRRG--TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 286 ~G---------------GI~~~--~di~kal~lGAd~V~iG~~~ 312 (323)
|. |-|.- .-...|+++|||+++|=+.+
T Consensus 201 D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~ 244 (285)
T 3sz8_A 201 DVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHP 244 (285)
T ss_dssp ETTTTCC---------------HHHHHHHHHHHCCSEEEEEEES
T ss_pred eCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEecc
Confidence 63 22221 23457888999999997765
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=91.58 E-value=3 Score=39.26 Aligned_cols=88 Identities=10% Similarity=0.016 Sum_probs=64.8
Q ss_pred CHHHHHHHHHhc--CCCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.+ +.++.+.. ..+.++| +.+.+.|+..|. +. ..+..++.+.++++.+ .+||.
T Consensus 185 ~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~--~iPIa 254 (388)
T 3tcs_A 185 TEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGFCHFE-------EP-CPYWELAQTKQVTDAL--DIDVT 254 (388)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTCCEEE-------CC-SCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCeEEE-------CC-CCccCHHHHHHHHHhc--CCCEE
Confidence 346788999987 46777773 3566664 455677887763 11 1123577888888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
++..+.+..|+.++++.| +|.|++--
T Consensus 255 ~dE~~~~~~~~~~~i~~~a~d~v~~d~ 281 (388)
T 3tcs_A 255 GGEQDCDLPTWQRMIDMRAVDIVQPDI 281 (388)
T ss_dssp ECTTCCCHHHHHHHHHHTCCSEECCCH
T ss_pred cCCccCCHHHHHHHHHcCCCCEEEeCc
Confidence 999999999999999987 88887743
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=91.56 E-value=2.1 Score=38.33 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=64.0
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchHHH----HHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~~pvi 284 (323)
+...++++++. +-|+++=...+.-.|+.+.++|+|.|.+....+. ..|+.+.+++. .+.+.+.. ...+|+
T Consensus 5 t~~~lr~~k~~-g~~i~~~tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~-~~~~vv 82 (264)
T 1m3u_A 5 TISLLQKYKQE-KKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGA-PNCLLL 82 (264)
T ss_dssp CHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC-TTSEEE
T ss_pred CHHHHHHHHHC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhC-CCCcEE
Confidence 45566666553 4688888889999999999999999988432221 12444445532 33344444 246788
Q ss_pred EecCCC---CHHHHH----HHHHcCCCEEEE
Q 020636 285 LDGGVR---RGTDVF----KALALGASGIFV 308 (323)
Q Consensus 285 a~GGI~---~~~di~----kal~lGAd~V~i 308 (323)
+|=+.- ++++++ +.+..||++|-+
T Consensus 83 aD~pfgsy~~~~~a~~~a~rl~kaGa~aVkl 113 (264)
T 1m3u_A 83 ADLPFMAYATPEQAFENAATVMRAGANMVKI 113 (264)
T ss_dssp EECCTTSSSSHHHHHHHHHHHHHTTCSEEEC
T ss_pred EECCCCCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 887665 777777 477799999988
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=91.55 E-value=1.5 Score=40.00 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCC-----CCCCCCcchHH-HHHHHHHHhc--CCCeEEEec
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLDYVPATIM-ALEEVVKATQ--GRIPVFLDG 287 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg-----~~~~~~~~~~~-~l~~i~~~~~--~~~pvia~G 287 (323)
.++++.+.-+.|+++=++.+.-.|+.+.++|+|+|.+|+.+- ...|....+++ .+..+..... .++||++|.
T Consensus 8 ~Lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~ 87 (302)
T 3fa4_A 8 SLRRALENPDSFIVAPGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADA 87 (302)
T ss_dssp HHHHHHHSTTCCEEEEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEEC
T ss_pred HHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEEC
Confidence 344444433456777788999999999999999999975321 12355554543 3333333222 279999987
Q ss_pred --CCCCHHHHH----HHHHcCCCEEEEc
Q 020636 288 --GVRRGTDVF----KALALGASGIFVS 309 (323)
Q Consensus 288 --GI~~~~di~----kal~lGAd~V~iG 309 (323)
|..++..+. +..+.||++|.|=
T Consensus 88 d~Gyg~~~~v~~tv~~l~~aGaagv~iE 115 (302)
T 3fa4_A 88 DTGYGGPIMVARTTEQYSRSGVAAFHIE 115 (302)
T ss_dssp TTTTSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 555555443 3455899999883
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=91.54 E-value=2.1 Score=40.32 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=83.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..+++.+.+.++++.+.|++++=+.++++... .++.
T Consensus 143 ~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~--------------------------------------------~~~~ 178 (386)
T 3fv9_G 143 GDTPEAMRAKVARHRAQGFKGHSIKIGASEAE--------------------------------------------GGPA 178 (386)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCCCTTT--------------------------------------------THHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC--------------------------------------------CCHH
Confidence 35677777777777788999988877643100 0112
Q ss_pred cCHHHHHHHHHhc--CCCEEEe--ccCCHHHHHHHHH-c--CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 212 LSWKDVKWLQTIT--KLPILVK--GVLTAEDARIAVQ-A--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK--~i~~~e~a~~~~~-~--Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
.+.+.++.+|+.+ +.++.+. +..+.++|.++.+ . +.+. .+- + ..+.++.+.++++.+ ++||.
T Consensus 179 ~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~i-~iE-----e---P~~~~~~~~~l~~~~--~iPIa 247 (386)
T 3fv9_G 179 LDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGLDI-VLE-----A---PCASWAETKSLRARC--ALPLL 247 (386)
T ss_dssp HHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSCSSCCC-EEE-----C---CCSSHHHHHHHHTTC--CSCEE
T ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhhccCCc-EEe-----c---CCCCHHHHHHHHhhC--CCCEE
Confidence 2456788888887 3567776 3467788765433 2 2222 221 1 112567777777766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
++.-+.+..|+.++++.| +|.|++-
T Consensus 248 ~dE~~~~~~~~~~~~~~~a~d~v~~k 273 (386)
T 3fv9_G 248 LDELIQTETDLIAAIRDDLCDGVGLK 273 (386)
T ss_dssp ESTTCCSHHHHHHHHHTTCCSEEEEE
T ss_pred eCCCcCCHHHHHHHHHhCCCCEEEEC
Confidence 999999999999999987 8998884
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=91.48 E-value=1.4 Score=40.08 Aligned_cols=122 Identities=11% Similarity=0.129 Sum_probs=67.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
-|.+.+++++++..+.|++++++. ++.- + .. ....+.
T Consensus 29 iD~~~l~~lv~~li~~Gv~Gl~v~-GtTG-----------------------------E-----~~--------~Ls~eE 65 (303)
T 2wkj_A 29 LDKASLRRLVQFNIQQGIDGLYVG-GSTG-----------------------------E-----AF--------VQSLSE 65 (303)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEES-STTT-----------------------------T-----GG--------GSCHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC-eecc-----------------------------C-----hh--------hCCHHH
Confidence 467888899999889999998863 1110 0 00 000111
Q ss_pred CHHHHHHHHHhc--CCCEEEecc-CC----HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCC-CeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVKGV-LT----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR-IPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~i-~~----~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~-~pvi 284 (323)
..+.++.+.+.. ++||++... .+ .+.++.+.++|+|++.+..-..... ....-++....+.+++ + +||+
T Consensus 66 r~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~-s~~~l~~~f~~va~a~--~~lPii 142 (303)
T 2wkj_A 66 REQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPF-SFEEHCDHYRAIIDSA--DGLPMV 142 (303)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHH--TTCCEE
T ss_pred HHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCC-CHHHHHHHHHHHHHhC--CCCCEE
Confidence 123455555554 478888743 23 3457888899999998754221111 1111234555666666 4 7777
Q ss_pred E-e----cCCCCHHHHHHHHH
Q 020636 285 L-D----GGVRRGTDVFKALA 300 (323)
Q Consensus 285 a-~----GGI~~~~di~kal~ 300 (323)
. + .|+.=..+.++-|+
T Consensus 143 lYn~P~~tg~~l~~~~~~~La 163 (303)
T 2wkj_A 143 VYNIPALSGVKLTLDQINTLV 163 (303)
T ss_dssp EEECHHHHCCCCCHHHHHHHH
T ss_pred EEeCccccCCCCCHHHHHHHh
Confidence 6 1 45543334443343
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.45 E-value=3 Score=36.68 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=34.9
Q ss_pred ccCHHHHHHHHHh--cCCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 211 SLSWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 211 ~~~~~~i~~i~~~--~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
...++.++++++. .++|++.=|..+.+++..+.++|+|+|.|.
T Consensus 175 ~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~ 219 (243)
T 3o63_A 175 APGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVV 219 (243)
T ss_dssp CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEES
T ss_pred hhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEe
Confidence 3568888888876 478987776558999999999999999984
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=91.35 E-value=0.14 Score=44.48 Aligned_cols=63 Identities=10% Similarity=0.034 Sum_probs=42.6
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH---H------HHHHHHcCCCEEEEc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT---D------VFKALALGASGIFVS 309 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~---d------i~kal~lGAd~V~iG 309 (323)
++. .+.|+| ++.+. +.+.++++.++ .+ ++.+||+-.. | ..+ ++.|||.+.+|
T Consensus 132 a~~-~e~G~d-vV~~~-------------~~~~~ir~~~~--~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVvG 192 (213)
T 1vqt_A 132 EKL-NKLGCD-FVLPG-------------PWAKALREKIK--GK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVLG 192 (213)
T ss_dssp HHH-HHHTCE-EECCH-------------HHHHHHTTTCC--SC-EEECCBC---------CCBCHHH-HTTTCSEEEES
T ss_pred HHH-hcCCCE-EEEcH-------------HHHHHHHHHCC--CC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEEC
Confidence 566 789999 54321 34555555553 35 8889997543 2 677 89999999999
Q ss_pred cccccCcchhh
Q 020636 310 IMPCQCPLTEK 320 (323)
Q Consensus 310 ~~~~~~~~~~~ 320 (323)
|.....++-.+
T Consensus 193 R~I~~a~dP~~ 203 (213)
T 1vqt_A 193 REIYLSENPRE 203 (213)
T ss_dssp HHHHTSSCHHH
T ss_pred hhhcCCCCHHH
Confidence 99988776544
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.34 E-value=1.1 Score=39.19 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=61.6
Q ss_pred cCCccCHHHHHHHHHhcCCCEEEecc--C----C-HHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH
Q 020636 208 IDRSLSWKDVKWLQTITKLPILVKGV--L----T-AEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 276 (323)
Q Consensus 208 ~~~~~~~~~i~~i~~~~~~pv~vK~i--~----~-~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~ 276 (323)
.+.+.+.+.++.+++.++.|++ |-+ . . .+++ ..+....+|++.+..+||+. ..-+++.+..+..
T Consensus 98 LHG~E~~~~~~~l~~~~~~~vi-Ka~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~GGtG---~~fDW~~~~~~~~- 172 (228)
T 4aaj_A 98 VHSNALPQTIDTLKKEFGVFVM-KAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTGAGSG---KLHDLRVSSLVAR- 172 (228)
T ss_dssp ECSCCCHHHHHHHHHHHCCEEE-EEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC----------CCCHHHHHHHH-
T ss_pred cccccCHHHHHHHhhccCceEE-EEEEecccccchhhhHHHHHHHHhccCCCEEccCCCCCCc---CcCChHHHHHhhh-
Confidence 3455677889999998887764 422 1 1 2333 23345679999988776642 1223455555433
Q ss_pred hcCCCeEEEecCCCCHHHHHHHHH-cCCCEEEEccccc
Q 020636 277 TQGRIPVFLDGGVRRGTDVFKALA-LGASGIFVSIMPC 313 (323)
Q Consensus 277 ~~~~~pvia~GGI~~~~di~kal~-lGAd~V~iG~~~~ 313 (323)
+.|+|.+||+ +++.+.+|+. .+..+|=+-+.+=
T Consensus 173 ---~~p~iLAGGL-~peNV~~Ai~~~~P~gVDVsSGVE 206 (228)
T 4aaj_A 173 ---KIPVIVAGGL-NAENVEEVIKVVKPYGVDVSSGVE 206 (228)
T ss_dssp ---HSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGE
T ss_pred ---cCCeEEECCC-CHHHHHHHHHHhCCCEEEeCCCCC
Confidence 4799999999 5788888887 6888888877653
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.67 Score=41.91 Aligned_cols=97 Identities=19% Similarity=0.322 Sum_probs=57.0
Q ss_pred CHHHHHHHHHhcCCCEEEecc--CCHHHHH----HHHHcCCCEEEEcCCCCCCCCCCc--chHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITKLPILVKGV--LTAEDAR----IAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i--~~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++++. .++.||++|.- .+++++. .+...|.+-+++.-.|++ ..... ..+..++.+++... ..||+
T Consensus 118 n~~ll~~~a-~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~-~~~~~~~~dl~~i~~lk~~~~-~~pV~ 194 (280)
T 2qkf_A 118 QTDLVVAMA-KTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSS-FGYDNLVVDMLGFGVMKQTCG-NLPVI 194 (280)
T ss_dssp BHHHHHHHH-HTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE-CSTTCEECCTTHHHHHHHHTT-TCCEE
T ss_pred CHHHHHHHH-cCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC-CCCCccccCHHHHHHHHHhCC-CCCEE
Confidence 455777774 57999999954 2666643 445688866666544542 11111 24556666666532 47999
Q ss_pred Ee-----------cCCCCH-----HH-HHHHHHcCCCEEEEcccc
Q 020636 285 LD-----------GGVRRG-----TD-VFKALALGASGIFVSIMP 312 (323)
Q Consensus 285 a~-----------GGI~~~-----~d-i~kal~lGAd~V~iG~~~ 312 (323)
.| ||-..+ .. ...+.++||++++|=+.|
T Consensus 195 ~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~ 239 (280)
T 2qkf_A 195 FDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHP 239 (280)
T ss_dssp EEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC--
T ss_pred EECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecC
Confidence 96 333444 23 345667999999998876
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.20 E-value=1.5 Score=39.94 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
-|.+.+++++++..+.|++++++. ++- | + -+.+
T Consensus 34 iD~~~l~~lv~~li~~Gv~gl~v~-Gtt--G---------------------------E-----------------~~~L 66 (304)
T 3cpr_A 34 IDIAAGREVAAYLVDKGLDSLVLA-GTT--G---------------------------E-----------------SPTT 66 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEES-STT--T---------------------------T-----------------TTTS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC-ccc--c---------------------------C-----------------hhhC
Confidence 477888899999989999998863 111 0 0 0112
Q ss_pred C----HHHHHHHHHhc--CCCEEEecc-CC----HHHHHHHHHcCCCEEEEcC
Q 020636 213 S----WKDVKWLQTIT--KLPILVKGV-LT----AEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~----~~~i~~i~~~~--~~pv~vK~i-~~----~e~a~~~~~~Gad~i~vs~ 254 (323)
+ .+.++.+.+.. ++||++... .+ .+.++.+.++|+|++.+..
T Consensus 67 s~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~ 119 (304)
T 3cpr_A 67 TAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVT 119 (304)
T ss_dssp CHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 2 23455555554 478887743 33 3457888899999998754
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.20 E-value=1.8 Score=37.82 Aligned_cols=76 Identities=24% Similarity=0.255 Sum_probs=53.9
Q ss_pred CEEEe--ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCC
Q 020636 227 PILVK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGA 303 (323)
Q Consensus 227 pv~vK--~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-lGA 303 (323)
+..|| |+.+.|+++ +.++|+|++-+--+..+ ...-+.+...+|.+.. ..|+...|=..+..++.+.+. .|.
T Consensus 20 ~M~VKICGit~~ed~~-a~~~gaD~iGfIf~~~S---pR~V~~~~A~~i~~~~--~~~~~~v~v~v~~~ei~~~i~~~~l 93 (228)
T 4aaj_A 20 HMFVKICGIKSLEELE-IVEKHADATGVVVNSNS---KRRIPLEKAREIIENS--AIPVFLVSTMVGFSEWAMAIERTGA 93 (228)
T ss_dssp CCEEEECCCCSHHHHH-HHHTTCSEEEEECSSSS---TTBCCHHHHHHHHHHC--SSCEEEEECCCCHHHHHHHHHHHTC
T ss_pred ceEEEECCCCcHHHHH-HHHcCCCEEEEEecCCC---CCCCCHHHHHHHHHhh--CCCCEEEeccCchHHHHHHHHhccc
Confidence 45788 458899986 67899999975433221 1123455566776665 577888887778888888775 799
Q ss_pred CEEEE
Q 020636 304 SGIFV 308 (323)
Q Consensus 304 d~V~i 308 (323)
|.|++
T Consensus 94 d~vQL 98 (228)
T 4aaj_A 94 QYIQV 98 (228)
T ss_dssp SEEEE
T ss_pred hheec
Confidence 99998
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=91.20 E-value=1.1 Score=40.84 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
-|.+.+++++++..+.|++++++. ++- | + -+.+
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~-Gtt--G---------------------------E-----------------~~~L 65 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVS-GTT--G---------------------------E-----------------SPTT 65 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEES-STT--T---------------------------T-----------------GGGS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeC-ccc--c---------------------------c-----------------hhhC
Confidence 477888999999999999998863 111 0 0 0112
Q ss_pred CH----HHHHHHHHhc--CCCEEEecc-CC----HHHHHHHHHcCCCEEEEcC
Q 020636 213 SW----KDVKWLQTIT--KLPILVKGV-LT----AEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 213 ~~----~~i~~i~~~~--~~pv~vK~i-~~----~e~a~~~~~~Gad~i~vs~ 254 (323)
++ +.++.+.+.. ++||++... .+ .+.++.+.++|+|++.+..
T Consensus 66 t~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 118 (304)
T 3l21_A 66 TDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVT 118 (304)
T ss_dssp CHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 22 3455555554 478888743 33 3447888999999998854
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=91.08 E-value=1.3 Score=39.84 Aligned_cols=80 Identities=10% Similarity=0.019 Sum_probs=49.3
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-.. --.+++..+.+.+.+ ||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 25 v~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g---vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 101 (286)
T 2r91_A 25 VKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR---VIVQVASLNADEAIALAKYAESRGAEAVASLPPYY 101 (286)
T ss_dssp HHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS---EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCS
T ss_pred HHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC---EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 45677899999999887664211111 123455555666543 655444444455543 3348999999999988
Q ss_pred cC-cchhhh
Q 020636 314 QC-PLTEKI 321 (323)
Q Consensus 314 ~~-~~~~~~ 321 (323)
.. |..+.+
T Consensus 102 ~~~~s~~~l 110 (286)
T 2r91_A 102 FPRLSERQI 110 (286)
T ss_dssp STTCCHHHH
T ss_pred CCCCCHHHH
Confidence 77 655443
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=2 Score=39.85 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
..++.++++++.+++||+.-| +.++++|+.+++.| ||.|.+
T Consensus 264 ~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~i 306 (343)
T 3kru_A 264 YQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVAL 306 (343)
T ss_dssp TTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred eeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHH
Confidence 467888999999999988775 57899999999998 999977
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=90.99 E-value=1.6 Score=39.20 Aligned_cols=87 Identities=29% Similarity=0.314 Sum_probs=58.6
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC-C---CCCCCCcchH----HHHHHHHHHhcCCCeEEEec-
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A---RQLDYVPATI----MALEEVVKATQGRIPVFLDG- 287 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g-g---~~~~~~~~~~----~~l~~i~~~~~~~~pvia~G- 287 (323)
++++++. + +++=++.+.-.|+.+.++|+|+|.+++.+ + ...|..+-++ .....|.+.+ ++||++|.
T Consensus 10 lr~l~~~-~--i~~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~--~~pviaD~d 84 (275)
T 2ze3_A 10 FHALHQT-G--FLLPNAWDVASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAV--AIPVNADIE 84 (275)
T ss_dssp HHHHHHH-C--EEECEESSHHHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHC--SSCEEEECT
T ss_pred HHHHhhC-C--eeEecccCHHHHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhc--CCCEEeecC
Confidence 4445443 3 77777889999999999999999998532 1 0234444444 3455555555 68999987
Q ss_pred -CCC-CHHHHH----HHHHcCCCEEEE
Q 020636 288 -GVR-RGTDVF----KALALGASGIFV 308 (323)
Q Consensus 288 -GI~-~~~di~----kal~lGAd~V~i 308 (323)
|.. ++.++. +.+..||++|-|
T Consensus 85 ~Gyg~~~~~~~~~v~~l~~aGaagv~i 111 (275)
T 2ze3_A 85 AGYGHAPEDVRRTVEHFAALGVAGVNL 111 (275)
T ss_dssp TCSSSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 544 454443 456689999998
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=90.96 E-value=2 Score=39.47 Aligned_cols=91 Identities=23% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC------CCCCCCCcchHHHHHHHHHHh--cC-CCeEEEe
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG------ARQLDYVPATIMALEEVVKAT--QG-RIPVFLD 286 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g------g~~~~~~~~~~~~l~~i~~~~--~~-~~pvia~ 286 (323)
.++++.+. +.|+++=++.+.-.|+.+.++|+|+|.+++.+ | ..|...-+++.+....+.+ .. ++||++|
T Consensus 30 ~lr~l~~~-~~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG-~pD~~~vt~~em~~~~~~I~r~~~~~PviaD 107 (318)
T 1zlp_A 30 TMHRLIEE-HGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLG-LPDFGLLTTTEVVEATRRITAAAPNLCVVVD 107 (318)
T ss_dssp HHHHHHHH-SSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHC-CCSSSCSCHHHHHHHHHHHHHHSSSSEEEEE
T ss_pred HHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcC-CCCCCCCCHHHHHHHHHHHHhhccCCCEEEe
Q ss_pred c--CCCCHHHHH----HHHHcCCCEEEE
Q 020636 287 G--GVRRGTDVF----KALALGASGIFV 308 (323)
Q Consensus 287 G--GI~~~~di~----kal~lGAd~V~i 308 (323)
. |..++.++. +.++.||++|.|
T Consensus 108 ~d~Gyg~~~~v~~tv~~l~~aGaagv~i 135 (318)
T 1zlp_A 108 GDTGGGGPLNVQRFIRELISAGAKGVFL 135 (318)
T ss_dssp CTTCSSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEE
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=90.95 E-value=2.9 Score=39.57 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=63.0
Q ss_pred CHHHHHHHHHhc-CCCEEEe--ccCCHHHHHH----HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 213 SWKDVKWLQTIT-KLPILVK--GVLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK--~i~~~e~a~~----~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
+.+.++.+|+.+ +.++.+- +..+.++|.+ +.+.|++.|. +. .+.++.+.++++.+ ++||.+
T Consensus 199 d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iE-------qP---~~d~~~~~~l~~~~--~iPIa~ 266 (398)
T 4dye_A 199 DVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLE-------DP---CVGIEGMAQVKAKV--RIPLCT 266 (398)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------CC---SSHHHHHHHHHHHC--CSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCCCEEc-------CC---CCCHHHHHHHHhhC--CCCEEe
Confidence 355678888876 4556665 2356777644 4456777764 11 12677888888877 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEccc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIM 311 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~ 311 (323)
+.-+.+..|+.++++.| +|.|++--.
T Consensus 267 dE~~~~~~~~~~~i~~~a~d~v~~k~~ 293 (398)
T 4dye_A 267 NMCVVRFEDFAPAMRLNAVDVIHGDVY 293 (398)
T ss_dssp SSSCCSGGGHHHHHHTTCCSEEEECHH
T ss_pred CCcCCCHHHHHHHHHhCCCCEEEeCcc
Confidence 99999999999999987 898887543
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=90.85 E-value=2.5 Score=38.62 Aligned_cols=95 Identities=21% Similarity=0.226 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC-C----CCCCCCcchHH-HHHHHHHHhcC---CCeEEE
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-A----RQLDYVPATIM-ALEEVVKATQG---RIPVFL 285 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g-g----~~~~~~~~~~~-~l~~i~~~~~~---~~pvia 285 (323)
+.++++.+.-+.|+++=++.+.-.|+.+.++|+|+|.+|+.+ + ...|..+.+++ .+..+...... ++||++
T Consensus 14 ~~lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~Pvia 93 (307)
T 3lye_A 14 KKLRHLLENTDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIA 93 (307)
T ss_dssp HHHHHHHHHCCCCEEEEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEE
T ss_pred HHHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEE
Confidence 345555444345787888899999999999999999997532 1 12455554543 33333322221 489999
Q ss_pred ec--CCCCHHHHH----HHHHcCCCEEEEc
Q 020636 286 DG--GVRRGTDVF----KALALGASGIFVS 309 (323)
Q Consensus 286 ~G--GI~~~~di~----kal~lGAd~V~iG 309 (323)
|. |..++..+. ++.+.||++|-|=
T Consensus 94 D~d~Gyg~~~~v~~~v~~l~~aGaagv~iE 123 (307)
T 3lye_A 94 DMDTGYGGPIMVARTVEHYIRSGVAGAHLE 123 (307)
T ss_dssp ECTTCSSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ECCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 87 554555443 3456899999883
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=90.82 E-value=8.9 Score=34.49 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.++|+.+.++|||.|++-. .+ .+...+|.+.+ ++|+|.-|
T Consensus 182 i~rA~a~~eAGA~~ivlE~---------vp-~~~a~~it~~l--~iP~igIG 221 (281)
T 1oy0_A 182 IADAIAVAEAGAFAVVMEM---------VP-AELATQITGKL--TIPTVGIG 221 (281)
T ss_dssp HHHHHHHHHHTCSEEEEES---------CC-HHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHHHcCCcEEEEec---------CC-HHHHHHHHHhC--CCCEEEeC
Confidence 3568899999999999843 23 36777888888 79999865
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=90.78 E-value=1.6 Score=38.77 Aligned_cols=89 Identities=22% Similarity=0.246 Sum_probs=60.0
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC-CC---CCCCCcchHH----HHHHHHHHhcCCCeEEEec-
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-AR---QLDYVPATIM----ALEEVVKATQGRIPVFLDG- 287 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g-g~---~~~~~~~~~~----~l~~i~~~~~~~~pvia~G- 287 (323)
++++++. +.|+++=++.+.-.|+.+.++|+|.|.+++.+ +. ..|+.+-+++ ....|.+.+ ++||++|.
T Consensus 12 lr~l~~~-~~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~--~~pviaD~~ 88 (255)
T 2qiw_A 12 FASDHES-GKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAV--SIPVSVDVE 88 (255)
T ss_dssp HHHHHHT-CCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHC--SSCEEEECT
T ss_pred HHHHHhC-CCcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcC--CCCEEeccC
Confidence 4444432 46888878889999999999999999998531 10 1344444443 344455555 69999987
Q ss_pred -CCCC--HHHHHHHHHcCCCEEEE
Q 020636 288 -GVRR--GTDVFKALALGASGIFV 308 (323)
Q Consensus 288 -GI~~--~~di~kal~lGAd~V~i 308 (323)
|..+ ..-+.+.+..||++|-|
T Consensus 89 ~Gyg~~~~~~~~~l~~aGa~gv~i 112 (255)
T 2qiw_A 89 SGYGLSPADLIAQILEAGAVGINV 112 (255)
T ss_dssp TCTTCCHHHHHHHHHHTTCCEEEE
T ss_pred CCcCcHHHHHHHHHHHcCCcEEEE
Confidence 4322 34456677799999998
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=90.74 E-value=1.8 Score=40.51 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.++.+.++++.+ ++||++ +|+.+.+++.++..+|||+|.++.
T Consensus 213 ~~~~i~~l~~~~--~~pv~v-K~~~~~e~a~~a~~~Gad~I~vs~ 254 (370)
T 1gox_A 213 SWKDVAWLQTIT--SLPILV-KGVITAEDARLAVQHGAAGIIVSN 254 (370)
T ss_dssp CHHHHHHHHHHC--CSCEEE-ECCCSHHHHHHHHHTTCSEEEECC
T ss_pred hHHHHHHHHHHh--CCCEEE-EecCCHHHHHHHHHcCCCEEEECC
Confidence 345677777776 799996 788999999999999999999964
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=1.1 Score=42.58 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=33.8
Q ss_pred CHHHHHHHHHhc--CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+++.+.++++.+ ++||+.- |+.+.+|+.+++.+|||+|.+.
T Consensus 293 ~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iG 336 (392)
T 2nzl_A 293 TIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVG 336 (392)
T ss_dssp HHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred hHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEEC
Confidence 466777777776 4888876 6799999999999999999883
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=1.9 Score=37.63 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=33.6
Q ss_pred cCHHHHHHHHHhc-----CCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~-----~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..++.|+++|+.. +.++.+-|..+.+.+..+.++|||.+++.
T Consensus 149 ~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 149 EMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp THHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHHHhccCCCceEEEECCcCHHHHHHHHHcCCCEEEEc
Confidence 3466677777654 57888888788899999999999999985
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=90.45 E-value=0.78 Score=41.66 Aligned_cols=95 Identities=23% Similarity=0.316 Sum_probs=59.3
Q ss_pred CHHHHHHHHHhcCCCEEEecc--CCHHH----HHHHHHcCC------CEEEEcCCCCCCCCCC--cchHHHHHHHHHHhc
Q 020636 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGA------AGIIVSNHGARQLDYV--PATIMALEEVVKATQ 278 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i--~~~e~----a~~~~~~Ga------d~i~vs~~gg~~~~~~--~~~~~~l~~i~~~~~ 278 (323)
+.+.++++. .++.||++|-- .+++| ++.+.+.|. +-|++.-.|- ..... ..++..++.+++ .
T Consensus 120 n~~LLr~~a-~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~-~y~~~~~~vdl~~i~~lk~-~- 195 (288)
T 3tml_A 120 QTDFIHACA-RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGV-SFGYNNLVSDMRSLAIMRE-T- 195 (288)
T ss_dssp CHHHHHHHH-TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCE-ECSSSCEECCHHHHHHGGG-G-
T ss_pred CHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCC-CCCCCcCcCCHHHHHHHHh-c-
Confidence 344566654 46899999954 36655 344556776 6677653332 11111 136777877766 5
Q ss_pred CCCeEEEe---------------cCCCCHH--HHHHHHHcCCCEEEEcccc
Q 020636 279 GRIPVFLD---------------GGVRRGT--DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 279 ~~~pvia~---------------GGI~~~~--di~kal~lGAd~V~iG~~~ 312 (323)
.+||+.| ||-|.-- -...|+++|||+++|=+.+
T Consensus 196 -~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadGl~iE~H~ 245 (288)
T 3tml_A 196 -NAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGLFMETHP 245 (288)
T ss_dssp -SSCEEEEHHHHTCCCC--------CTTHHHHHHHHHHHHCCSEEEEEEES
T ss_pred -CCcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEeecc
Confidence 7999985 4444332 3457888999999998765
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=90.44 E-value=4.4 Score=37.70 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=62.1
Q ss_pred cCHHHHHHH---HHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 212 LSWKDVKWL---QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 212 ~~~~~i~~i---~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.|+..+.+ ++..++++ +-.+.+.+.+..+.+.|+|.+.+... ....+.+|.++.+ . +.|||.+-|
T Consensus 75 l~~e~~~~L~~~~~~~Gi~~-~st~fD~~svd~l~~~~v~~~KI~S~-------~~~N~pLL~~va~-~--gKPviLstG 143 (350)
T 3g8r_A 75 LQPEQMQKLVAEMKANGFKA-ICTPFDEESVDLIEAHGIEIIKIASC-------SFTDWPLLERIAR-S--DKPVVASTA 143 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCEE-EEEECSHHHHHHHHHTTCCEEEECSS-------STTCHHHHHHHHT-S--CSCEEEECT
T ss_pred CCHHHHHHHHHHHHHcCCcE-EeccCCHHHHHHHHHcCCCEEEECcc-------cccCHHHHHHHHh-h--CCcEEEECC
Confidence 556555544 45556654 45678899999999999999998431 2346778877764 3 789999999
Q ss_pred CCCHHHHHHHHH----cCCCEEEE
Q 020636 289 VRRGTDVFKALA----LGASGIFV 308 (323)
Q Consensus 289 I~~~~di~kal~----lGAd~V~i 308 (323)
..|-+++..|+. .|.+ |.+
T Consensus 144 mstl~Ei~~Ave~i~~~g~~-viL 166 (350)
T 3g8r_A 144 GARREDIDKVVSFMLHRGKD-LTI 166 (350)
T ss_dssp TCCHHHHHHHHHHHHTTTCC-EEE
T ss_pred CCCHHHHHHHHHHHHHcCCC-EEE
Confidence 999999998865 3666 444
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=90.38 E-value=1.6 Score=40.25 Aligned_cols=83 Identities=25% Similarity=0.319 Sum_probs=57.2
Q ss_pred HHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC--------CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 221 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 221 ~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~--------~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.+..+.-+|+ .+.+.+.|+.+.++||++|.+-+ .+|- ....+.+.+.+|.+++ ++||++==-|..-
T Consensus 13 ~~~~kgGvI~-d~~~~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~---arm~~p~~i~~I~~av--~iPV~~K~rig~~ 86 (330)
T 2yzr_A 13 AKMVKHGVVM-DVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGV---ARMSDPALIEEIMDAV--SIPVMAKCRIGHT 86 (330)
T ss_dssp HHTTTTSEEE-EESSHHHHHHHHHHTCSEEEECSSCHHHHC--CCC---CCCCCHHHHHHHHHHC--SSCEEEEEETTCH
T ss_pred HHHccCCcee-eCCHHHHHHHHHHcCCCEEEecCCccccccCCcch---hhcCCHHHHHHHHHhc--CCCeEEEEeecch
Confidence 3445666777 78899999999999999996543 1221 1245778888999888 8999986555333
Q ss_pred HHHHHHHHcCCCEEEEc
Q 020636 293 TDVFKALALGASGIFVS 309 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG 309 (323)
.++.-.-++|||.+-+.
T Consensus 87 ~e~qilea~GaD~Id~s 103 (330)
T 2yzr_A 87 TEALVLEAIGVDMIDES 103 (330)
T ss_dssp HHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHcCCCEEehh
Confidence 33333334999999643
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=90.37 E-value=1.4 Score=41.49 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEE
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~v 252 (323)
+ ++++|+.+++||+.-|..+.++|+.+++.| ||.|.+
T Consensus 298 ~-~~~ir~~~~iPvi~~G~it~~~a~~~l~~g~aD~V~i 335 (379)
T 3aty_A 298 V-VAWVRGSYSGVKISNLRYDFEEADQQIREGKVDAVAF 335 (379)
T ss_dssp H-HHHHHTTCCSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred H-HHHHHHHCCCcEEEECCCCHHHHHHHHHcCCCeEEEe
Confidence 5 888999999999887655999999999998 999977
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=90.23 E-value=1.4 Score=39.85 Aligned_cols=45 Identities=13% Similarity=0.398 Sum_probs=39.1
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.+.++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 186 ~p~Ld~~~L~~I~~~~~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~ 232 (286)
T 1gvf_A 186 TPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_dssp CCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTTEEEEEEC
T ss_pred CCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHCCCeEEEEC
Confidence 5778899999999999999999986 46788999999998877663
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=90.18 E-value=4.3 Score=35.33 Aligned_cols=42 Identities=29% Similarity=0.318 Sum_probs=36.0
Q ss_pred cCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..++.|+++|+.. +.++.+=|..+.+.+..+.++|||.+++.
T Consensus 159 ~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 159 DMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAG 201 (227)
T ss_dssp GGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 4577888888877 67888888888999999999999999884
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=90.14 E-value=1.7 Score=39.32 Aligned_cols=103 Identities=10% Similarity=0.120 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHH-cCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 133 KDRNVVAQLVRRAER-AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~-~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
-|.+.+++++++..+ .|++++++. ++. | + -+.
T Consensus 21 iD~~~l~~lv~~li~~~Gv~gl~~~-Gtt--G---------------------------E-----------------~~~ 53 (293)
T 1f6k_A 21 INEKGLRQIIRHNIDKMKVDGLYVG-GST--G---------------------------E-----------------NFM 53 (293)
T ss_dssp BCHHHHHHHHHHHHHTSCCSEEEES-SGG--G---------------------------T-----------------GGG
T ss_pred cCHHHHHHHHHHHHhhCCCcEEEeC-ccc--c---------------------------c-----------------hhh
Confidence 477888899999888 999998863 110 0 0 011
Q ss_pred cC----HHHHHHHHHhc--CCCEEEecc-CC----HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCC
Q 020636 212 LS----WKDVKWLQTIT--KLPILVKGV-LT----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 280 (323)
Q Consensus 212 ~~----~~~i~~i~~~~--~~pv~vK~i-~~----~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 280 (323)
++ .+.++.+.+.. ++||++... .+ .+.++.+.++|+|++.+..-..... ....-++....+.+++ +
T Consensus 54 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~-~~~~l~~~f~~va~a~--~ 130 (293)
T 1f6k_A 54 LSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKF-SFPEIKHYYDTIIAET--G 130 (293)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHHHH--C
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhC--C
Confidence 22 23455555554 478887743 33 3447788899999998854221110 0111234455555555 5
Q ss_pred CeEEE
Q 020636 281 IPVFL 285 (323)
Q Consensus 281 ~pvia 285 (323)
+||+.
T Consensus 131 lPiil 135 (293)
T 1f6k_A 131 SNMIV 135 (293)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66665
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=90.14 E-value=0.69 Score=41.76 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=59.5
Q ss_pred HHHHHHHHhc--CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCC----------Ccc---hHHHHHHHHHHhcC
Q 020636 215 KDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY----------VPA---TIMALEEVVKATQG 279 (323)
Q Consensus 215 ~~i~~i~~~~--~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~----------~~~---~~~~l~~i~~~~~~ 279 (323)
+.++.++++. +.||+-.+..+.-.|+.+...|+|.|++.|.|.....+ +-+ .++.-.++...++
T Consensus 15 ~il~~l~~~i~~~~~iig~gaGtGlsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v~- 93 (286)
T 2p10_A 15 ELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVR- 93 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCS-
T ss_pred HHHHHHHHHHhcCCceEEEecccchhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccCC-
Confidence 4577777765 67998888899999999999999999998765322211 111 1233334444443
Q ss_pred CCeEEEec-C---CCCHHHHHHHHH-cCCCEE
Q 020636 280 RIPVFLDG-G---VRRGTDVFKALA-LGASGI 306 (323)
Q Consensus 280 ~~pvia~G-G---I~~~~di~kal~-lGAd~V 306 (323)
++||++-= + .++-..+++.|. +|+++|
T Consensus 94 ~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv 125 (286)
T 2p10_A 94 HTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV 125 (286)
T ss_dssp SSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEECCcCCCcCHHHHHHHHHHhCCceE
Confidence 79999821 1 123445556665 899998
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=90.01 E-value=1.4 Score=39.96 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=47.4
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH----HcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL----ALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal----~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-... -.+++..+.+.+.+ ||+--|=.+-.+.++.. .+|||++++-.++.
T Consensus 26 v~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g---viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 102 (293)
T 1w3i_A 26 AENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK---IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYY 102 (293)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC---EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC---EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 455678999999998776642111111 12344444444432 65544444555555433 37999999999988
Q ss_pred cC-cchhhh
Q 020636 314 QC-PLTEKI 321 (323)
Q Consensus 314 ~~-~~~~~~ 321 (323)
.. |..+.+
T Consensus 103 ~~~~s~~~l 111 (293)
T 1w3i_A 103 YPRMSEKHL 111 (293)
T ss_dssp CSSCCHHHH
T ss_pred CCCCCHHHH
Confidence 77 655443
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=89.97 E-value=1.6 Score=41.41 Aligned_cols=92 Identities=11% Similarity=0.137 Sum_probs=67.5
Q ss_pred CHHHHHHHHHhcC--CCEEEec--cCCHHHHHH----HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVKG--VLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK~--i~~~e~a~~----~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.++ .++.+-. ..+.++|.+ +.+.|++.|.-- + -.+..++.+.++++.+ ++||.
T Consensus 199 d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP------~-~~~~~~~~~~~l~~~~--~iPIa 269 (410)
T 3dip_A 199 GLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVEDP------I-AKMDNIPAVADLRRQT--RAPIC 269 (410)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCSEEECC------B-SCTTCHHHHHHHHHHH--CCCEE
T ss_pred HHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC------C-CCcccHHHHHHHHhhC--CCCEE
Confidence 4677899999884 6777762 357777644 446788877521 0 0123577888888887 89999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~~ 313 (323)
+++.+.+..|+.++++.| +|.|++--..+
T Consensus 270 ~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~ 299 (410)
T 3dip_A 270 GGENLAGTRRFHEMLCADAIDFVMLDLTWC 299 (410)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEEEECTTTS
T ss_pred ecCCcCCHHHHHHHHHcCCCCeEeeccccc
Confidence 999999999999999987 89998854433
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=89.92 E-value=3.8 Score=38.35 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=62.9
Q ss_pred CHHHHHHHHHhcC--CCEEEe--ccCCHHHHH----HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVK--GVLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK--~i~~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++.+|+.++ .++.+. +..+.++|. .+.+.|+..|. +. ..+..++.+.++++.+ ++||.
T Consensus 180 d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------qP-~~~~d~~~~~~l~~~~--~ipIa 249 (382)
T 3dgb_A 180 DLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGIDLIE-------QP-ISRNNRAGMVRLNASS--PAPIM 249 (382)
T ss_dssp HHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTCCCEE-------CC-BCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCcCeee-------CC-CCccCHHHHHHHHHhC--CCCEE
Confidence 3556788888763 567666 234666654 44566776663 11 1123578888888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
++.-+.+..|+.++++.| +|.|++--
T Consensus 250 ~dE~~~~~~~~~~~~~~~~~d~v~~k~ 276 (382)
T 3dgb_A 250 ADESIECVEDAFNLAREGAASVFALKI 276 (382)
T ss_dssp ESTTCSSHHHHHHHHHHTCCSEEEECH
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEecc
Confidence 999999999999999976 89998853
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.90 E-value=1.3 Score=40.07 Aligned_cols=45 Identities=20% Similarity=0.456 Sum_probs=39.2
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEEc
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~vs 253 (323)
.|.+.++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+.
T Consensus 190 ~p~Ld~~~L~~I~~~v~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~ 236 (288)
T 3q94_A 190 EPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVN 236 (288)
T ss_dssp SCCCCHHHHHHHHHHHCSCEEECCCTTCCHHHHHHHHHTTEEEEEEC
T ss_pred CCccCHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHcCCeEEEEC
Confidence 4778999999999999999999986 56788999999998877663
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=89.79 E-value=1.2 Score=41.75 Aligned_cols=74 Identities=16% Similarity=0.076 Sum_probs=52.4
Q ss_pred CCHHHHHHHH-HcCCCEEEEcCCCCC---CC--CCCcch-HHHHHHHHHHhcCCCeEEEecCC---CCHHHHHHHHHcCC
Q 020636 234 LTAEDARIAV-QAGAAGIIVSNHGAR---QL--DYVPAT-IMALEEVVKATQGRIPVFLDGGV---RRGTDVFKALALGA 303 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~~gg~---~~--~~~~~~-~~~l~~i~~~~~~~~pvia~GGI---~~~~di~kal~lGA 303 (323)
.+.+++.++. ..|+|++.+.-.... +. +..... ++.+.++++.+ ++||++-+ + .+.+++.++..+||
T Consensus 155 ~~~e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~--~~PVivK~-vg~g~s~e~A~~l~~aGa 231 (365)
T 3sr7_A 155 KPYQAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKL--QLPFILKE-VGFGMDVKTIQTAIDLGV 231 (365)
T ss_dssp SCHHHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHC--CSCEEEEE-CSSCCCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhh--CCCEEEEE-CCCCCCHHHHHHHHHcCC
Confidence 4667766555 789999998532210 11 111212 36788888877 79999985 6 78999999999999
Q ss_pred CEEEEcc
Q 020636 304 SGIFVSI 310 (323)
Q Consensus 304 d~V~iG~ 310 (323)
|+|.++.
T Consensus 232 d~I~V~g 238 (365)
T 3sr7_A 232 KTVDISG 238 (365)
T ss_dssp CEEECCC
T ss_pred CEEEEeC
Confidence 9999943
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=89.60 E-value=1.4 Score=39.77 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=46.4
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+++.|+|+|++.++.|....-... -.+++..+.+.+.+ ||+--|=.+-.+.++ |-.+|||++++-.++.
T Consensus 26 v~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g---ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 102 (288)
T 2nuw_A 26 AKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK---LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPYY 102 (288)
T ss_dssp HHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC---EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCCCS
T ss_pred HHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC---eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 455678999999998776642111111 12233333333332 655444444455543 3347999999999988
Q ss_pred cC-cchhhh
Q 020636 314 QC-PLTEKI 321 (323)
Q Consensus 314 ~~-~~~~~~ 321 (323)
.. |..+.+
T Consensus 103 ~~~~s~~~l 111 (288)
T 2nuw_A 103 FPRLPEKFL 111 (288)
T ss_dssp SCSCCHHHH
T ss_pred CCCCCHHHH
Confidence 77 655443
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=3.6 Score=35.19 Aligned_cols=86 Identities=22% Similarity=0.080 Sum_probs=55.4
Q ss_pred HHHHHHHHHhc-CCCE--EEeccCCHH-HHHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCCCeEEE-ec
Q 020636 214 WKDVKWLQTIT-KLPI--LVKGVLTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFL-DG 287 (323)
Q Consensus 214 ~~~i~~i~~~~-~~pv--~vK~i~~~e-~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~pvia-~G 287 (323)
.+.++++|+.+ +.|+ -+|....++ .++.+.++|+|+|.+..-++ ...+ +++..+.+ . .+..++ .=
T Consensus 47 ~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~------~~~~~~~~~~~~~-~--g~~~~~d~l 117 (218)
T 3jr2_A 47 MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAH------IATIAACKKVADE-L--NGEIQIEIY 117 (218)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSC------HHHHHHHHHHHHH-H--TCEEEEECC
T ss_pred HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCC------HHHHHHHHHHHHH-h--CCccceeee
Confidence 45788898874 4454 456544443 47889999999999954322 1222 33333333 2 455554 34
Q ss_pred CCCCHHHHHHHHHcCCCEEEE
Q 020636 288 GVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~i 308 (323)
|+.|+.++.++...|+|.+.+
T Consensus 118 ~~~T~~~~~~~~~~g~d~v~~ 138 (218)
T 3jr2_A 118 GNWTMQDAKAWVDLGITQAIY 138 (218)
T ss_dssp SSCCHHHHHHHHHTTCCEEEE
T ss_pred ecCCHHHHHHHHHcCccceee
Confidence 567888999988899998766
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=89.48 E-value=1.9 Score=36.60 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcC
Q 020636 215 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
+.++++ ++.|+++.| +.+.|++.. +++||++|+.|+
T Consensus 142 ~~I~~v---~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~ 178 (188)
T 1vkf_A 142 KVARKI---PGRTVIAAGLVETEEEARE-ILKHVSAISTSS 178 (188)
T ss_dssp HHHTTS---TTSEEEEESCCCSHHHHHH-HTTTSSEEEECC
T ss_pred HHHHHh---cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCC
Confidence 445555 688999996 689999999 999999999876
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=89.47 E-value=2.2 Score=41.81 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHHHHHHhc-------CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTIT-------KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~-------~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
|+.+.++++.+ ++||+.- ||.+.+|+.+++.+|||+|.+.
T Consensus 385 ~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iG 432 (511)
T 1kbi_A 385 IEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 432 (511)
T ss_dssp HHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 55566666554 6888776 6799999999999999999883
|
| >2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A | Back alignment and structure |
|---|
Probab=89.37 E-value=1.5 Score=41.60 Aligned_cols=97 Identities=19% Similarity=0.040 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCC--CEEEeccCC----HHHHHHHHHc--CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---c-CCC
Q 020636 214 WKDVKWLQTITKL--PILVKGVLT----AEDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 281 (323)
Q Consensus 214 ~~~i~~i~~~~~~--pv~vK~i~~----~e~a~~~~~~--Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~~ 281 (323)
.+.++..++.++. ++ +-.+.| .++|..+.+. |+|+|-+.+...+. ....+...++.+.+ + .++
T Consensus 197 ~~A~~~~~~~~p~~~~~-~vlvDT~d~~~~~al~~a~~l~~~d~IrlDs~~~~~----gd~~~~v~~v~~~ld~~G~~~~ 271 (398)
T 2i1o_A 197 EEAWKLTLENTKNGQKS-VLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRR----GNFEALIREVRWELALRGRSDI 271 (398)
T ss_dssp HHHHHHHHHTCCTTSCC-EEECCSSSCHHHHHHHHHTTCSCCCEEEECCCGGGC----SCHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHhCCCCCCE-EEEEcCchHHHHHHHHHHHhhcCCcEEEeCCCCCCc----ccHHHHHHHHHHHHHhCCCCce
Confidence 4556777777652 33 233434 3555555444 99999887743210 12334444454432 1 268
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.|+++||| +.+.+.+..+.|+|.+++|+.+...|
T Consensus 272 ~I~aSggl-~~~~i~~l~~~GvD~~gvGt~l~~~~ 305 (398)
T 2i1o_A 272 KIMVSGGL-DENTVKKLREAGAEAFGVGTSISSAK 305 (398)
T ss_dssp EEEEESSC-CHHHHHHHHHTTCCEEEECHHHHTCC
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEEeCcccCCCC
Confidence 99999999 67888888889999999999776544
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=0.84 Score=43.06 Aligned_cols=86 Identities=5% Similarity=-0.052 Sum_probs=60.7
Q ss_pred cCHHHHHHHHHhc--CCCEEEe--ccCCHHHHHHHH----HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH-----hc
Q 020636 212 LSWKDVKWLQTIT--KLPILVK--GVLTAEDARIAV----QAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-----TQ 278 (323)
Q Consensus 212 ~~~~~i~~i~~~~--~~pv~vK--~i~~~e~a~~~~----~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~-----~~ 278 (323)
...+.++.+|+.+ +.++.+- +..+.+++.... +.|++.|. +.- . ..++.+.++++. +
T Consensus 186 ~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE-------~P~-~-~d~~~~~~l~~~l~~~g~- 255 (392)
T 3p3b_A 186 RDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLE-------EAF-H-EDEALYEDLKEWLGQRGQ- 255 (392)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCEEEEE-------CSS-S-CCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEe-------cCC-c-ccHHHHHHHHHhhccCCC-
Confidence 3467788898876 4677765 335777764443 34444432 111 1 357778888877 5
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 279 GRIPVFLDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 279 ~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
++||++++ +.+..++.++++.| +|.|++=
T Consensus 256 -~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik 285 (392)
T 3p3b_A 256 -NVLIADGE-GLASPHLIEWATRGRVDVLQYD 285 (392)
T ss_dssp -CCEEEECC-SSCCTTHHHHHHTTSCCEECCB
T ss_pred -CccEEecC-CCCHHHHHHHHHcCCCCEEEeC
Confidence 79999999 99999999999998 8888773
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=89.30 E-value=1.9 Score=41.19 Aligned_cols=89 Identities=11% Similarity=-0.090 Sum_probs=64.4
Q ss_pred HHHHHHHHHhc--CCCEEEec--cCCHHHHHH----HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTIT--KLPILVKG--VLTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~--~~pv~vK~--i~~~e~a~~----~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+|+.+ +.+|.+.. ..+.++|.+ +.+.|++.|.-- ..+..++.+.++++.+ .+||++
T Consensus 215 ~e~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~iPIa~ 284 (426)
T 4e4f_A 215 PKLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWMEDP--------TPAENQACFRLIRQHT--VTPIAV 284 (426)
T ss_dssp HHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEECC--------SCCSSGGGGHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEECC--------CChHHHHHHHHHHhcC--CCCEEe
Confidence 46789999988 47888773 357777644 446787777421 1122455667777766 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
++.+.+..|+.++++.| +|.|++--..
T Consensus 285 dE~~~~~~~~~~~i~~ga~d~v~~k~~~ 312 (426)
T 4e4f_A 285 GEVFNSIWDCKQLIEEQLIDYIRTTITH 312 (426)
T ss_dssp CTTCCSGGGTHHHHHTTCCSEECCCTTT
T ss_pred CCCcCCHHHHHHHHHcCCCCEEEeCccc
Confidence 99999999999999987 7988875433
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=89.21 E-value=2.6 Score=39.56 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=58.3
Q ss_pred HHHhc-CCCEEEe-cc------CCHHHHHHHH-HcCCCEEEEcCCCCC---CCC--CCc--chHHHHHHHHHHhcCCCeE
Q 020636 220 LQTIT-KLPILVK-GV------LTAEDARIAV-QAGAAGIIVSNHGAR---QLD--YVP--ATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 220 i~~~~-~~pv~vK-~i------~~~e~a~~~~-~~Gad~i~vs~~gg~---~~~--~~~--~~~~~l~~i~~~~~~~~pv 283 (323)
+|+.. +.|++.. +. .+++.++++. ..++|++.+.-.... +.. ... ..++.+.++++.+ ++||
T Consensus 113 vr~~ap~~~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~--~vPV 190 (368)
T 3vkj_A 113 VRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKEL--SVPI 190 (368)
T ss_dssp HHHHCSSSCEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTC--SSCE
T ss_pred HHHhCcCcceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHc--CCCE
Confidence 44443 4666543 22 4567776655 468888888532110 011 111 2567788887776 7999
Q ss_pred EEe--cCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 284 FLD--GGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 284 ia~--GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
++- |+--+++++.++..+|||+|.++.
T Consensus 191 ivK~vG~g~s~~~A~~l~~aGad~I~V~g 219 (368)
T 3vkj_A 191 IVKESGNGISMETAKLLYSYGIKNFDTSG 219 (368)
T ss_dssp EEECSSSCCCHHHHHHHHHTTCCEEECCC
T ss_pred EEEeCCCCCCHHHHHHHHhCCCCEEEEeC
Confidence 996 655789999999999999999943
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.10 E-value=13 Score=33.76 Aligned_cols=179 Identities=11% Similarity=0.071 Sum_probs=99.6
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--ec---CCCCCCHHHHH-------hcCC-CceeEEeeecCChHHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LS---SWSTSSVEEVA-------STGP-GIRFFQLYVYKDRNVV 138 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--vs---~~s~~~~eei~-------~~~~-~~~~~QLy~~~d~~~~ 138 (323)
.|.++.|+.-.+-.+.++-..+.+-.-+.|+..+ .+ ++.+.+.+|-. +..+ -+.+.... ..+-...
T Consensus 13 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg-~~~t~~a 91 (313)
T 3dz1_A 13 FAIAPTPFHDDGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVS-APGFAAM 91 (313)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECC-CSSHHHH
T ss_pred EEEeeCCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecC-CCCHHHH
Confidence 4667778754332344444577777778887543 23 33445655522 2232 34555553 2456667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHH
Q 020636 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (323)
Q Consensus 139 ~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (323)
.++.+.++++|++++.+. .|.. + | ...+ ..+..+
T Consensus 92 i~la~~A~~~Gadavlv~--~P~~-~-----------~-------------------s~~~-------------l~~~f~ 125 (313)
T 3dz1_A 92 RRLARLSMDAGAAGVMIA--PPPS-L-----------R-------------------TDEQ-------------ITTYFR 125 (313)
T ss_dssp HHHHHHHHHHTCSEEEEC--CCTT-C-----------C-------------------SHHH-------------HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEC--CCCC-C-----------C-------------------CHHH-------------HHHHHH
Confidence 788899999999999863 2321 0 0 0011 123455
Q ss_pred HHHHhcC--CCEEEecc-------CCHHHHHHHHH-cC-CCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc----CCCeE
Q 020636 219 WLQTITK--LPILVKGV-------LTAEDARIAVQ-AG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ----GRIPV 283 (323)
Q Consensus 219 ~i~~~~~--~pv~vK~i-------~~~e~a~~~~~-~G-ad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~----~~~pv 283 (323)
.+.+.++ +||++=.+ .+++...++.+ .. +-+|.-+ ...++..+.++.+.++ +++.|
T Consensus 126 ~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKd~---------~~~~~~~~~~~~~~~~~~~~~~f~v 196 (313)
T 3dz1_A 126 QATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDSASCVMLKHE---------DWPGLEKITTLRGFQKDGSLRPLSI 196 (313)
T ss_dssp HHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHHHCSSEEEEEEC---------CSSCHHHHHHHHHHHHHTSSCCCEE
T ss_pred HHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEEcC---------CCCCHHHHHHHHHhcCccCCCCeEE
Confidence 6667777 99988643 67888887764 32 3233221 1123445555555543 35554
Q ss_pred EEecCCCCHHHHHH-HHHcCCCEEEEcc
Q 020636 284 FLDGGVRRGTDVFK-ALALGASGIFVSI 310 (323)
Q Consensus 284 ia~GGI~~~~di~k-al~lGAd~V~iG~ 310 (323)
+. |. ....+. ++++|+++++.|.
T Consensus 197 ~~-G~---d~~~l~~~l~~G~~G~i~~~ 220 (313)
T 3dz1_A 197 LC-GN---GGLFLDFEMERGADGAMTGY 220 (313)
T ss_dssp EE-CG---GGTTHHHHHHHTCCEEEECC
T ss_pred Ee-CC---cHHHHHHHHHCCCcEEEeCc
Confidence 43 31 111344 4899999987764
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.99 E-value=2.8 Score=36.77 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcC-CCeE--EEecCCCCHHHHHHHH----HcCCCEEEEc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPV--FLDGGVRRGTDVFKAL----ALGASGIFVS 309 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~~pv--ia~GGI~~~~di~kal----~lGAd~V~iG 309 (323)
.+++.+++.|||.|.+.-.-|...+ ...+-+.++++.++. .+|+ |..-+.-+.+.+.++- ++|||+|=..
T Consensus 92 ~e~~~Av~~GAdEID~vinig~~~~---~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~ria~eaGADfVKTs 168 (234)
T 1n7k_A 92 VEAQTVLEAGATELDVVPHLSLGPE---AVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTS 168 (234)
T ss_dssp HHHHHHHHHTCCEEEECCCGGGCHH---HHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESC
T ss_pred HHHHHHHHcCCCEEEEeccchHHHH---HHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 5688899999999987432221111 233445555555532 2564 7777777877777654 4799999999
Q ss_pred ccccc
Q 020636 310 IMPCQ 314 (323)
Q Consensus 310 ~~~~~ 314 (323)
+.|.+
T Consensus 169 TG~~~ 173 (234)
T 1n7k_A 169 TGVYT 173 (234)
T ss_dssp CSSSC
T ss_pred CCCCC
Confidence 88763
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=88.90 E-value=0.69 Score=40.97 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=35.1
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.++++++..++||++.+ +.+++++..+.++|||+++|.
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 34578899988899999885 566999999999999999984
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=88.89 E-value=4.6 Score=34.48 Aligned_cols=78 Identities=15% Similarity=-0.016 Sum_probs=50.0
Q ss_pred EEe--ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCCCE
Q 020636 229 LVK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASG 305 (323)
Q Consensus 229 ~vK--~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-lGAd~ 305 (323)
.+| |+.+++||+.+.++|+|++-+--+... ...-+.+...++.+.++..+..++.===.+.+.+.+... +|.|.
T Consensus 2 ~vKICGit~~eda~~a~~~GaD~iGfif~~~S---pR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~ 78 (203)
T 1v5x_A 2 RVKICGITRLEDALLAEALGAFALGFVLAPGS---RRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQV 78 (203)
T ss_dssp EEEECCCCCHHHHHHHHHHTCSEEEEECCTTC---TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSE
T ss_pred cEEEcCCCcHHHHHHHHHcCCCEEEEEecCCC---CCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCE
Confidence 367 568999999999999999976532211 112245666777777654333332211135777777665 79999
Q ss_pred EEEc
Q 020636 306 IFVS 309 (323)
Q Consensus 306 V~iG 309 (323)
|++-
T Consensus 79 vQLH 82 (203)
T 1v5x_A 79 AQLH 82 (203)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9983
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=88.85 E-value=2.8 Score=44.53 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=34.7
Q ss_pred HHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
++.+.++++.+ ++||+.- ||.+.+||.+++.+|||+|.+.
T Consensus 775 ~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg 816 (1025)
T 1gte_A 775 LRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVC 816 (1025)
T ss_dssp HHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEe
Confidence 56788898888 7898765 6899999999999999999884
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=88.83 E-value=5.9 Score=37.00 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=63.6
Q ss_pred CHHHHHHHHHhcC--CCEEEe--ccCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK--~i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
..+.++.+|+.++ .++.+- +..+.++| +.+.+.|+..|. +. ..+..++.+.++++.+ ++||.
T Consensus 179 d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------eP-~~~~d~~~~~~l~~~~--~ipIa 248 (381)
T 3fcp_A 179 DLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVDLIE-------QP-VSAHDNAALVRLSQQI--ETAIL 248 (381)
T ss_dssp HHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCSEEE-------CC-BCTTCHHHHHHHHHHS--SSEEE
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCcccee-------CC-CCcccHHHHHHHHHhC--CCCEE
Confidence 3557888888874 556665 23466664 445677877763 11 1133578888888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
++.-+.+..|+.+++..| +|.|++--
T Consensus 249 ~dE~~~~~~~~~~~~~~~a~d~v~~k~ 275 (381)
T 3fcp_A 249 ADEAVATAYDGYQLAQQGFTGAYALKI 275 (381)
T ss_dssp ESTTCCSHHHHHHHHHTTCCSEEEECH
T ss_pred ECCCcCCHHHHHHHHHcCCCCEEEecc
Confidence 999999999999999986 89988853
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=1 Score=43.98 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.+.++.+.+.|++.+.+....|. ....++.+..+++..++++||+ .|+|.+.+++.++..+|||++.+|.
T Consensus 244 ~e~~~~l~e~gv~~l~Vd~~~g~----~~~~~~~i~~lk~~~~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~Vg~ 313 (503)
T 1me8_A 244 RERVPALVEAGADVLCIDSSDGF----SEWQKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIKIGI 313 (503)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCC----SHHHHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHHhhhccceEEecccCc----ccchhhHHHHHHHhCCCCceEe-eccccCHHHHHHHHHhCCCeEEecc
Confidence 45577888999999988432221 1224566666776653227787 4899999999999999999998864
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=1.7 Score=39.87 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=35.1
Q ss_pred CHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+++.+.++++.. ++||+.- |+.+.+|+.+++.+|||+|.+.
T Consensus 243 ~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~ig 285 (332)
T 1vcf_A 243 TARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVA 285 (332)
T ss_dssp HHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhh
Confidence 467788888888 7998775 6899999999999999999884
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=88.54 E-value=12 Score=34.74 Aligned_cols=89 Identities=17% Similarity=0.189 Sum_probs=57.2
Q ss_pred CHHHHHHHHHhcC-CCEEEe--ccCCHHHHHHHH-H---cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 213 SWKDVKWLQTITK-LPILVK--GVLTAEDARIAV-Q---AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 213 ~~~~i~~i~~~~~-~pv~vK--~i~~~e~a~~~~-~---~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
+.+.++.+|+.++ .++.+- +..+.++|.+.. . ...+...+- +. -.+..++.+.++.+.. ++||.+
T Consensus 174 d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~i~~iE-----eP-~~~~d~~~~~~l~~~~--~ipIa~ 245 (365)
T 3ik4_A 174 DLARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFE-----QP-LPREDWAGMAQVTAQS--GFAVAA 245 (365)
T ss_dssp HHHHHHHHHHHSSSCCEEEECTTCCCHHHHHHHHHHHHHTTCCEEEEE-----CC-SCTTCHHHHHHHHHHS--SSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCceEEE-----CC-CCcccHHHHHHHHhhC--CCCEEE
Confidence 3556778888763 344443 235677764332 2 222222221 10 1123577888888877 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
+--+.+..|+.+++..| +|.|++-
T Consensus 246 dE~~~~~~~~~~~i~~~a~d~v~ik 270 (365)
T 3ik4_A 246 DESARSAHDVLRIAREGTASVINIK 270 (365)
T ss_dssp STTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEEc
Confidence 99999999999999877 8888763
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=88.50 E-value=11 Score=36.31 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+++...++++++.++|++.|.+. |+-- . ..|...
T Consensus 156 ~~e~~~~~a~~l~~~Gad~I~l~-DT~G-----------~----------------------------------~~P~~v 189 (464)
T 2nx9_A 156 NLQTWVDVAQQLAELGVDSIALK-DMAG-----------I----------------------------------LTPYAA 189 (464)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE-ETTS-----------C----------------------------------CCHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEc-CCCC-----------C----------------------------------cCHHHH
Confidence 67888888888999999877762 3210 0 123334
Q ss_pred HHHHHHHHHhcCCCEEEec----cCCHHHHHHHHHcCCCEEEEcCC
Q 020636 214 WKDVKWLQTITKLPILVKG----VLTAEDARIAVQAGAAGIIVSNH 255 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~----i~~~e~a~~~~~~Gad~i~vs~~ 255 (323)
.+.++++++.+++||-+.. -+....+..++++||+.|..+-.
T Consensus 190 ~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti~ 235 (464)
T 2nx9_A 190 EELVSTLKKQVDVELHLHCHSTAGLADMTLLKAIEAGVDRVDTAIS 235 (464)
T ss_dssp HHHHHHHHHHCCSCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBCG
T ss_pred HHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 5678899998888888873 24467788999999999997643
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=88.50 E-value=2.5 Score=39.58 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEE
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~v 252 (323)
++++|+.+++||+.-|-.++++|+.+++.| ||.|.+
T Consensus 271 ~~~ik~~~~iPvi~~Ggit~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 271 GPLIKEAFGGPYIVNERFDKASANAALASGKADAVAF 307 (362)
T ss_dssp HHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCccEEEE
Confidence 567888889999887655999999999988 999977
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=88.47 E-value=2.8 Score=38.62 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=54.5
Q ss_pred cCCCEEEecc--CCHHHH-HHHHHcCCCEEEEcCCCCCC---CCCCc---chHHHHHHHHHHhcCCCeEEEe--cCCCCH
Q 020636 224 TKLPILVKGV--LTAEDA-RIAVQAGAAGIIVSNHGARQ---LDYVP---ATIMALEEVVKATQGRIPVFLD--GGVRRG 292 (323)
Q Consensus 224 ~~~pv~vK~i--~~~e~a-~~~~~~Gad~i~vs~~gg~~---~~~~~---~~~~~l~~i~~~~~~~~pvia~--GGI~~~ 292 (323)
.+.|+++..- .+.+.. +.+..+|+|+|.+......+ ..+.+ ..++.+.++++.+ ++||++- |...+.
T Consensus 115 ~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~--~~Pv~vK~~~~~~~~ 192 (349)
T 1p0k_A 115 PNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV--SVPVIVKEVGFGMSK 192 (349)
T ss_dssp SSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC--SSCEEEEEESSCCCH
T ss_pred CCceeEEeecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHc--CCCEEEEecCCCCCH
Confidence 4678776532 455554 44557899999874321110 01111 1356788887776 7999986 444789
Q ss_pred HHHHHHHHcCCCEEEEc
Q 020636 293 TDVFKALALGASGIFVS 309 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG 309 (323)
+++.++.++|||+|.+.
T Consensus 193 ~~a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 193 ASAGKLYEAGAAAVDIG 209 (349)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999994
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=88.42 E-value=4.3 Score=34.74 Aligned_cols=78 Identities=12% Similarity=-0.005 Sum_probs=50.0
Q ss_pred EEe--ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCCCE
Q 020636 229 LVK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASG 305 (323)
Q Consensus 229 ~vK--~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-lGAd~ 305 (323)
.+| |+.+++||+.+.++|+|++-+--+... ...-+.+...++.+.++..+..++.===.+.+++.+... +|.|.
T Consensus 3 ~vKICGit~~eda~~a~~~GaD~iGfif~~~S---pR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~ 79 (205)
T 1nsj_A 3 RVKICGITNLEDALFSVESGADAVGFVFYPKS---KRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNA 79 (205)
T ss_dssp EEEECCCCSHHHHHHHHHHTCSEEEEECCTTC---TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSE
T ss_pred cEEECCCCcHHHHHHHHHcCCCEEEEEecCCC---CCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCE
Confidence 367 568999999999999999976532211 112245666777777654333332211135677777665 79999
Q ss_pred EEEc
Q 020636 306 IFVS 309 (323)
Q Consensus 306 V~iG 309 (323)
|++-
T Consensus 80 vQLH 83 (205)
T 1nsj_A 80 VQLH 83 (205)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9983
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=88.37 E-value=5.3 Score=36.00 Aligned_cols=95 Identities=19% Similarity=0.138 Sum_probs=63.4
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcchH----HHHHHHHHHhcCCCeE
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATI----MALEEVVKATQGRIPV 283 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~~pv 283 (323)
.+...++.+++. +-|+++=...+.-.|+.+.++|+|.|.+....+. ..|+.+.++ ...+.+.+.++ ..+|
T Consensus 21 ~t~~~lr~~k~~-g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~-~~~v 98 (281)
T 1oy0_A 21 IRTHHLQRWKAD-GHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAP-HALV 98 (281)
T ss_dssp CCHHHHHHHHHH-TCCEEEEECCSHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCT-TSEE
T ss_pred cCHHHHHHHHhC-CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC-CCeE
Confidence 466677777654 4688888889999999999999999976432221 123333333 34555555552 3556
Q ss_pred EEecCCC----CHHHH----HHHHH-cCCCEEEE
Q 020636 284 FLDGGVR----RGTDV----FKALA-LGASGIFV 308 (323)
Q Consensus 284 ia~GGI~----~~~di----~kal~-lGAd~V~i 308 (323)
++|=+.- +.+++ .+.+. .||++|-|
T Consensus 99 vaD~pfgsy~~s~~~a~~na~rl~~eaGa~aVkl 132 (281)
T 1oy0_A 99 VADLPFGSYEAGPTAALAAATRFLKDGGAHAVKL 132 (281)
T ss_dssp EEECCTTSSTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEECCCCcccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 7776652 57774 56776 89999988
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=88.36 E-value=3.9 Score=35.78 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=33.0
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~v 252 (323)
+.+.++.+++. +++|.+-.+.++++++++.+.|+|+|+.
T Consensus 199 ~~~~v~~~~~~-G~~v~~WTvn~~~~~~~l~~~GVdgIiT 237 (252)
T 3qvq_A 199 DVQQVSDIKAA-GYKVLAFTINDESLALKLYNQGLDAVFS 237 (252)
T ss_dssp CHHHHHHHHHT-TCEEEEECCCCHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence 45567777664 7889888999999999999999999976
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 323 | ||||
| d1goxa_ | 359 | c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia | 5e-92 | |
| d1p4ca_ | 353 | c.1.4.1 (A:) Membrane-associated (S)-mandelate deh | 3e-76 | |
| d1tb3a1 | 349 | c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus | 3e-76 | |
| d1kbia1 | 414 | c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal | 9e-76 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 5e-42 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 8e-41 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 3e-15 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 2e-14 | |
| d1ofda2 | 809 | c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy | 5e-06 | |
| d1ea0a2 | 771 | c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy | 6e-06 |
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 276 bits (705), Expect = 5e-92
Identities = 282/306 (92%), Positives = 297/306 (97%)
Query: 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMN 62
EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
TT+LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW+TSSVEEVASTGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF LPPFLTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
NF+G+DLGKMD+ANDSGL++YVAGQIDRSLSWKDV WLQTIT LPILVKGV+TAEDAR+A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
VQ GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGRIPVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 303 ASGIFV 308
A+G+F+
Sbjct: 302 AAGVFI 307
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 235 bits (600), Expect = 3e-76
Identities = 129/305 (42%), Positives = 193/305 (63%), Gaps = 3/305 (0%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ NV +Y +A+++LPKMV+DY GAED++ ++ NR+ F + F+P+ L+DVS+ +
Sbjct: 2 LFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQA 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPG 123
VLG + SMP++I PT + P+G+ A ARAA+ AG LS+ S S+E++A G
Sbjct: 62 EVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDG 121
Query: 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183
+FQ R + +V +A G+ + LT D G RE D+ NRF +PPFLTLKN
Sbjct: 122 DLWFQ-LYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKN 180
Query: 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAV 243
F+G+DLGKMD+AN AA ++ Q+D S +W+ ++WL+ + +LVKG+L+AEDA +
Sbjct: 181 FEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCI 240
Query: 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303
GA G+I+SNHG RQLD + + L + V + PV +D G RRG+D+ KALALGA
Sbjct: 241 AEGADGVILSNHGGRQLDCAISPMEVLAQSVA--KTGKPVLIDSGFRRGSDIVKALALGA 298
Query: 304 SGIFV 308
+ +
Sbjct: 299 EAVLL 303
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 235 bits (600), Expect = 3e-76
Identities = 133/307 (43%), Positives = 184/307 (59%), Gaps = 8/307 (2%)
Query: 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNT 63
+ + +++A A+++L K +D+ A+D T EN AF RI RPR L D+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 64 TVLGFKISMPIMIAPTAMQKMAHPEGE-YATARAASAAGTIMTLSSWSTSSVEEVASTGP 122
T+ G +IS PI I+PTA +A P+GE A A + S S S + VA+
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182
G R+FQLY+ D + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L + LK
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLK 181
Query: 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242
+ + L K + S W D+ LQ+IT+LPI++KG+LT EDA +A
Sbjct: 182 DLRALKEEKP-------TQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 302
++ GI+VSNHG RQLD V A+I AL EVV A +G+I V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 303 ASGIFVS 309
A IF+
Sbjct: 295 ARCIFLG 301
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 236 bits (602), Expect = 9e-76
Identities = 120/319 (37%), Positives = 183/319 (57%), Gaps = 17/319 (5%)
Query: 1 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKID 60
+ I N+ ++E +A + L K + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D
Sbjct: 22 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 81
Query: 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGE------YATARAASAAGTIMTLSSWSTSSV 114
++T +LG + +P ++ TA+ K+ +P I TL+S S +
Sbjct: 82 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 141
Query: 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174
E A + I+++QLYV DR + LV+ E+ G KA+ +TVD P LG+RE D+K +F+
Sbjct: 142 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 201
Query: 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL 234
K + G + ++ ID SL+WKD++ L+ TKLPI++KGV
Sbjct: 202 NTKAGPKAMK------KTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 255
Query: 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-----GRIPVFLDGGV 289
ED A + G +G+++SNHG RQLD+ A I L E + + ++ VF+DGGV
Sbjct: 256 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 315
Query: 290 RRGTDVFKALALGASGIFV 308
RRGTDV KAL LGA G+ +
Sbjct: 316 RRGTDVLKALCLGAKGVGL 334
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 146 bits (368), Expect = 5e-42
Identities = 49/301 (16%), Positives = 90/301 (29%), Gaps = 67/301 (22%)
Query: 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAP-TAMQKMAHPEGEYATARAA 97
I F L + + ++D++T + S PI I T E + ARAA
Sbjct: 3 TGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAA 62
Query: 98 SAAGTIMTLSSWSTSSVEEVASTGPGI------RFFQLYVYKDRNVVAQLVRRAERAGFK 151
S AG + + S ++ + I AQ E G
Sbjct: 63 SQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGAN 122
Query: 152 AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211
A+ + ++ + ++
Sbjct: 123 ALQIHLNVIQEIVMPEGDRSFSG------------------------------------- 145
Query: 212 LSWKDVKWLQTITKLPILVKGVLT---AEDARIAVQAGAAGIIVSNHGARQLDYVPAT-- 266
+ K ++ + + +P++VK V A +AGAA + + +G +
Sbjct: 146 -ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRR 204
Query: 267 --------------IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312
+L E+ + GG++ DV KA+ALGAS ++
Sbjct: 205 QRQISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHF 263
Query: 313 C 313
Sbjct: 264 L 264
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 142 bits (359), Expect = 8e-41
Identities = 52/293 (17%), Positives = 80/293 (27%), Gaps = 53/293 (18%)
Query: 38 ENRNAFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATAR 95
+ R + L + +S++D+ T LG + P +I + A A
Sbjct: 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAE 60
Query: 96 AASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155
AA A G M L S A F++ + ++ A L
Sbjct: 61 AAEALGVGMMLGSGRILLERPEALRS-----FRVRKVAPKALL--------IANLGLAQL 107
Query: 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215
R ++ L + V
Sbjct: 108 RRYGRDDLLRLVEMLEADALAFHVNPLQE------------------AVQRGDTDFRGLV 149
Query: 216 DVKWLQTITKLPILVKGVLT---AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEE 272
+ P++VK V E A A + V+ G V + E
Sbjct: 150 ERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEV 209
Query: 273 V-----------------VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFV 308
V+ +P+ GGV GTD KALALGA + V
Sbjct: 210 RHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAV 262
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 71.4 bits (174), Expect = 3e-15
Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 8/183 (4%)
Query: 134 DRNVVAQLVRRAERAGFKAI-ALTVDTPRLGRREAD-----IKNRFTLPPFLTLKNFQGL 187
+++++ A G I A T + + D I R + +
Sbjct: 21 SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE 80
Query: 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 247
++ + Q + + V +++T ++ + T E+A+ A + G
Sbjct: 81 VDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGF 140
Query: 248 AGIIVSNHGARQLDYVPATIMALEEVVK--ATQGRIPVFLDGGVRRGTDVFKALALGASG 305
I + HG + +K V +G V + + LG
Sbjct: 141 DYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHC 200
Query: 306 IFV 308
V
Sbjct: 201 SVV 203
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 69.5 bits (169), Expect = 2e-14
Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 18/187 (9%)
Query: 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD----- 188
++ + + A+ AG I +I+ LP +K
Sbjct: 31 TGGIMPLMAKAAQEAGAVGIRANSVRD-----IKEIQAITDLPIIGIIKKDYPPQEPFIT 85
Query: 189 ------LGKMDEANDSGLAAYVAGQIDRSLS-WKDVKWLQTITKLPILVKGVLTAEDARI 241
L ++ ++ +L+ + T ++ +
Sbjct: 86 ATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLV 145
Query: 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301
A QAG + + G A + + + I V +G + + K L
Sbjct: 146 AHQAGIDFVGTTLSGYTPYSRQEAGPD-VALIEALCKAGIAVIAEGKIHSPEEAKKINDL 204
Query: 302 GASGIFV 308
G +GI V
Sbjct: 205 GVAGIVV 211
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Score = 45.7 bits (108), Expect = 5e-06
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 19/111 (17%)
Query: 217 VKWLQTIT-KLPILVKGVLTAEDARIA---VQAGAAGIIVS-----NHGARQ--LDYV-- 263
+ L I + + VK V IA +A A I +S + + +
Sbjct: 589 IYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGS 648
Query: 264 PATIMALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309
P + + EV + + R+ + DGG++ G DV A +GA
Sbjct: 649 P-WELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFG 698
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Score = 45.3 bits (107), Expect = 6e-06
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 19/111 (17%)
Query: 217 VKWLQTIT-KLPILVKGVLTAEDARIA---VQAGAAGIIVSNHGARQLDYVPATIM---- 268
+ L+ I + VK V + IA +A A I++S + P T +
Sbjct: 562 IYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSG-GTGASPQTSIKFAG 620
Query: 269 -----ALEEVVKA-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309
L EV + + R+ + DGG++ G D+ A LGA +
Sbjct: 621 LPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIG 671
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 100.0 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 100.0 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.89 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.88 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.88 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.88 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 99.86 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.85 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 99.82 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.81 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.75 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.69 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.6 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.59 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.55 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.55 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.55 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 99.49 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.47 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 99.41 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 99.33 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 99.32 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 99.21 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 98.88 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 98.86 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.82 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 98.82 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 98.79 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 98.74 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.71 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 98.61 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.58 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 98.58 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.53 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.5 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.5 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.48 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.47 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 98.44 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.43 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.42 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 98.39 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.38 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 98.38 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.35 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 98.31 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.31 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.24 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 98.23 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 98.17 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 98.14 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 98.14 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.13 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.83 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 97.8 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.74 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.74 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 97.62 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 97.61 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 97.55 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.54 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 97.52 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 97.51 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.51 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.43 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.33 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.32 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 97.26 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 97.17 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 97.11 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.09 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 97.08 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.98 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 96.93 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 96.89 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 96.8 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 96.75 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 96.69 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 96.51 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 96.5 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 96.39 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.32 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 96.27 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 96.16 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.1 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 96.1 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 96.08 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 95.91 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 95.69 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 95.65 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 95.64 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 95.63 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 95.58 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 95.54 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 95.54 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 95.53 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 95.5 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 95.42 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.27 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 95.21 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 95.09 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 95.07 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 95.01 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 94.96 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 94.81 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 94.43 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 94.33 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 94.29 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 94.23 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 94.22 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 94.2 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 94.18 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 94.12 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 93.84 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 93.8 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 93.74 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 93.18 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 93.14 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 92.76 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 92.67 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 92.3 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 92.28 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 92.14 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 91.91 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 91.9 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 91.41 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 91.4 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 91.37 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 91.04 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 91.0 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 90.94 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 90.9 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 90.78 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 90.4 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 90.3 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 90.18 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 90.06 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 89.92 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 89.73 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 89.66 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 89.44 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 89.2 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 89.08 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 88.88 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 88.87 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 88.87 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 88.87 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 88.44 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 88.38 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 88.24 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 88.14 | |
| d1vlia2 | 295 | Spore coat polysaccharide biosynthesis protein Sps | 88.04 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 87.88 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 87.83 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 87.74 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 87.64 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 87.18 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 87.1 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 86.92 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 86.87 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 86.83 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 86.5 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 86.29 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 86.2 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 86.0 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 85.85 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 85.53 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 85.52 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 85.45 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 85.31 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 85.28 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 85.27 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 84.47 | |
| d1igwa_ | 416 | Isocitrate lyase {Escherichia coli [TaxId: 562]} | 84.33 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 84.32 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 84.22 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 83.99 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 83.96 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 83.92 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 83.64 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 83.47 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 83.42 | |
| d1k66a_ | 149 | Response regulator for cyanobacterial phytochrome | 83.01 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 82.92 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 82.86 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 82.67 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 81.82 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 81.81 | |
| d2basa1 | 261 | Hypothetical protein YkuI, N-terminal domain {Baci | 81.33 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 81.32 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 81.29 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 81.21 | |
| d1onra_ | 316 | Transaldolase {Escherichia coli [TaxId: 562]} | 80.95 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 80.13 |
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=8.6e-67 Score=495.46 Aligned_cols=305 Identities=45% Similarity=0.703 Sum_probs=274.0
Q ss_pred CCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccccc
Q 020636 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (323)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~ 83 (323)
+.|++|||+.||++||+.+|+|++||++||.|+++|+++||+|+|+||+|++++++||+|+|||+++++||+||||++++
T Consensus 2 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~ 81 (349)
T d1tb3a1 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (349)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred cccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 84 l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
+.|+++|..+|++|+++|+++++|++++.+.|++.+..+ ++.|||+|.+.+++...+++++++++|++++++|+|.|+.
T Consensus 82 ~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~ 161 (349)
T d1tb3a1 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (349)
T ss_dssp GTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSC
T ss_pred ccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhh
Confidence 999999999999999999999999999999999988765 6899999999999999999999999999999999999999
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
++|+++++++|.+|..+....+.......... .......++.++|++++|+++.+++|+++|++.+.+++..+
T Consensus 162 ~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~a 234 (349)
T d1tb3a1 162 GNRRRDKRNQLNLEANILLKDLRALKEEKPTQ-------SVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELA 234 (349)
T ss_dssp CCCHHHHHTTCCCCC----CCSCCCCC--------------------CCCCHHHHHHHHTTCCSCEEEEEECSHHHHHHH
T ss_pred cchhhhhhccccCCcccchhhhhhhhhccccc-------cccccccCCCCCHHHHHHHHHhcCCCcccchhhhhHHHHHH
Confidence 99999999999988766544432221111000 01112345678999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.++|+|+|++|||||+++++.+++.+.|+++++.+++++|||+|||||+|.|++|||+|||++|+|||+|+..
T Consensus 235 ~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~ 307 (349)
T d1tb3a1 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWG 307 (349)
T ss_dssp HHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHH
T ss_pred HHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHH
Confidence 9999999999999999999999999999999999988999999999999999999999999999999999753
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=3.9e-64 Score=478.75 Aligned_cols=314 Identities=90% Similarity=1.312 Sum_probs=288.2
Q ss_pred CCCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccc
Q 020636 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (323)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~ 81 (323)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+||||++
T Consensus 1 ~~~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtg 80 (359)
T d1goxa_ 1 MEITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAM 80 (359)
T ss_dssp CCCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSC
T ss_pred CcccCHHHHHHHHHHhCCHHHHHHHhccCCccHHHHHHHHHHHhcceecccccCCCCCCCceeECCcccCCceeeccccc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 020636 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 82 ~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~ 161 (323)
+++.|+++|..++++|+++|+++++|++++.+++++++..+++.|+|+|...+......++++++.+|++++++|+|.|+
T Consensus 81 g~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~ 160 (359)
T d1goxa_ 81 QKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 160 (359)
T ss_dssp GGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSS
T ss_pred cccCCCchHHHhhhhHHhhCCcccccccccccchhhHHhcCCCcccccccchhHHHHHHHHHHHHHhhcccccccccchh
Confidence 99999999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred CCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHH
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~ 241 (323)
.+.|++++++++..|......+......+........+....+..+.++.++|++++++++.+++|+++|++.+.+++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~ 240 (359)
T d1goxa_ 161 LGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARL 240 (359)
T ss_dssp CCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHH
T ss_pred hhhhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCCCCHHHHHHHHhhcccceeeecccchHHHHH
Confidence 99999999999998887776655444333222223334445566677889999999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 242 ~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
+.+.|++++.++||||+++++++++.+.|+++++.+++++|||+|||||+|.|++|||+||||+|++||+|+..
T Consensus 241 a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~ 314 (359)
T d1goxa_ 241 AVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFS 314 (359)
T ss_dssp HHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred HHHccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999854
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-60 Score=457.74 Aligned_cols=308 Identities=38% Similarity=0.647 Sum_probs=265.3
Q ss_pred CCCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECcccc
Q 020636 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (323)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~ 81 (323)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||||+
T Consensus 23 ~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~iDlst~~lG~~l~~P~~Isp~g~ 102 (414)
T d1kbia1 23 DNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATAL 102 (414)
T ss_dssp GGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSC
T ss_pred hhcCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhceeeccccCCCcCCCCceeECCccCCCCEEEChhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcH---HHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCC---CceeEEeeecCChHHHHHHHHHHHHcCCcEEEE
Q 020636 82 QKMAHPE---GEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIAL 155 (323)
Q Consensus 82 ~~l~~~~---~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~---~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~i 155 (323)
++++||. .+.+.++++...|+++++|+.++.+++++.+..+ .+.|+|+|.+.+.+....++++++++|++++++
T Consensus 103 ~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~~ 182 (414)
T d1kbia1 103 CKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFV 182 (414)
T ss_dssp GGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEE
T ss_pred hcccCcchhHHHHHhhHHHhhhccccccccccccchHHHHHHhcCCccchhhcccccccHHHHHHHHHHHHHcCCccccc
Confidence 9999983 3445555556689999999999999999988765 457999999999999999999999999999999
Q ss_pred ecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCC
Q 020636 156 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT 235 (323)
Q Consensus 156 tvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~ 235 (323)
|+|.|+.|+|++|++..+..+...... .... .. . ...+....+....++.++|++++|+++.++.|+++|++.+
T Consensus 183 tvD~~~~g~re~d~~~~~~~~~~~~~~-~~~~--~~-~--~~~~~~~~i~~~~~~~l~~~~i~~i~~~~~~~~i~kgi~~ 256 (414)
T d1kbia1 183 TVDAPSLGQREKDMKLKFSNTKAGPKA-MKKT--NV-E--ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQR 256 (414)
T ss_dssp ECSCSSCCCCHHHHHHHHTTCC--------CC--CC-S--SCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECS
T ss_pred ccccccccccHHHHHhcccccccchhh-hhcc--cc-c--ccccHHHHHHHhcccCCCHHHHHHHhccCCceEEeeccch
Confidence 999999999999999887543211100 0000 00 0 0011111233445677899999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh-----cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.++|..+.+.|+|+++++||||++++..+++...++++...+ .+++|||+|||||+|.|++|||+||||+|+|||
T Consensus 257 ~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigr 336 (414)
T d1kbia1 257 TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGR 336 (414)
T ss_dssp HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred hHHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcH
Confidence 999999999999999999999999999999999898887653 457999999999999999999999999999999
Q ss_pred ccccC
Q 020636 311 MPCQC 315 (323)
Q Consensus 311 ~~~~~ 315 (323)
+|+..
T Consensus 337 p~L~~ 341 (414)
T d1kbia1 337 PFLYA 341 (414)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99753
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=4.8e-59 Score=441.93 Aligned_cols=310 Identities=43% Similarity=0.727 Sum_probs=278.5
Q ss_pred CCCChHHHHHHHHHhCChhhhhhhcCCccchHHHHHhHHhhcccccccccccCCCCCccceeecCcccccceEECccccc
Q 020636 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (323)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~e~t~~~N~~~~~~i~l~pr~l~~~~~~d~~t~i~g~~~~~Pi~iaPm~~~ 82 (323)
+++|+.|||+.||++||+..|+|++||++||.|+++|+++||+|+|+||+|+|++++||+|+|||+++++||+|+||+++
T Consensus 1 ~~~~~~d~~~~a~~~~p~~~~~y~~~ga~~~~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lGk~ls~Pi~Iapmtgg 80 (353)
T d1p4ca_ 1 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 80 (353)
T ss_dssp CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCG
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhCcEEcccccCCCCCCCceEECCcCccCceeecccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 020636 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (323)
Q Consensus 83 ~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~ 162 (323)
+..++.+|..+|++|+++|+++++|++++.+++++.+..+...|+|.+ ..+...+..++++++..|++++++++|.|..
T Consensus 81 ~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~ 159 (353)
T d1p4ca_ 81 GALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLY-VIHREIAQGMVLKALHTGYTTLVLTTDVAVN 159 (353)
T ss_dssp GGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEEC-CSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred ccccchhhHHHHHHHHHhhccccccccccccchhHHHhcCCceeeeec-cccHHHHHHhHHHHHHcCCcceeeecccccc
Confidence 999999999999999999999999999999999999888777788766 5688888999999999999999999999999
Q ss_pred CchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHH
Q 020636 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (323)
Q Consensus 163 g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~ 242 (323)
|.|+.+.++++.+|...........................+..+.++.++|++++++++.++.|+++|++.+.+++..+
T Consensus 160 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~~~~~~~~a 239 (353)
T d1p4ca_ 160 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 239 (353)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred CcchhhhhhhhcccchhhhhhhhhhccccccccccchhHHHHHhccCCCCCHHHHHHHHhccccchhhhcchhhhhHHHH
Confidence 99999999999887665554433322221111122223335556677889999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 243 ~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+|+++++||||+++++.+++.+.++++.... ++|||+|||||+|.|++|||+||||+|++||+|+..
T Consensus 240 ~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~--~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~ 310 (353)
T d1p4ca_ 240 IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYG 310 (353)
T ss_dssp HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHH
T ss_pred HhcCCchhhhcccccccccccccchhcccchhccc--ccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHH
Confidence 99999999999999999999999999999998877 799999999999999999999999999999999854
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.9e-38 Score=295.88 Aligned_cols=234 Identities=21% Similarity=0.204 Sum_probs=183.1
Q ss_pred hhcccccccccc--cCCCCCccceeecCcccccceEECccc-ccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHH
Q 020636 42 AFSRILFRPRIL--IDVSKIDMNTTVLGFKISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (323)
Q Consensus 42 ~~~~i~l~pr~l--~~~~~~d~~t~i~g~~~~~Pi~iaPm~-~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~ 118 (323)
.||+|+|+|++| .|++++||+|+|+|+++++||++|||+ +.+..+++++.++|++|++.|+++++|++++.+.++..
T Consensus 4 gfddi~lvP~~l~~~d~~~vdlst~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~~ 83 (329)
T d1p0ka_ 4 GLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSE 83 (329)
T ss_dssp SGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHHH
T ss_pred CcceEEEECCCCCCCChhhCCCCEEECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchhHHH
Confidence 599999999999 689999999999999999999999995 44456788899999999999999999998877766543
Q ss_pred hcC------CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCC
Q 020636 119 STG------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (323)
Q Consensus 119 ~~~------~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~ 192 (323)
... ..+.++|++............+.+++.|++++.+++++|....+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~------------------------ 139 (329)
T d1p0ka_ 84 RLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEG------------------------ 139 (329)
T ss_dssp HHHHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC-----------------------------
T ss_pred HhhhhhHhhhCCcceEEEeeccchhHHHHHHHHHHcCCCEEEecccccchhhhccc------------------------
Confidence 321 13456666655454445556677788999999999999863221110
Q ss_pred ccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCCCCCC--------
Q 020636 193 DEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQLD-------- 261 (323)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg~~~~-------- 261 (323)
..+....|+.++++++.++.|+++|++ .++++++.+.++|+|+|+|+||||++++
T Consensus 140 --------------~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~ 205 (329)
T d1p0ka_ 140 --------------DRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQ 205 (329)
T ss_dssp -----------------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------
T ss_pred --------------cccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCCCCccccchhhcc
Confidence 012234588999999999999999987 6899999999999999999999998753
Q ss_pred --------CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 262 --------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 262 --------~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
.+.+..+.+.++....+ ++|||+|||||++.|++|||++|||+|++||+++.
T Consensus 206 ~~~g~~~~~~~~~~~~l~~~~~~~~-~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~ 265 (329)
T d1p0ka_ 206 RQISFFNSWGISTAASLAEIRSEFP-ASTMIASGGLQDALDVAKAIALGASCTGMAGHFLK 265 (329)
T ss_dssp CCGGGGTTCSCCHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred cCccchhHhHHHHHHHHHHHHhhcC-CceEEEcCCcccHHHHHHHHHcCCCchhccHHHHH
Confidence 23566777888777654 79999999999999999999999999999998864
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1e-37 Score=288.88 Aligned_cols=235 Identities=24% Similarity=0.216 Sum_probs=182.9
Q ss_pred HhHHhhccccccccccc--CCCCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHH
Q 020636 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE 115 (323)
Q Consensus 38 ~N~~~~~~i~l~pr~l~--~~~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~e 115 (323)
+|+++|+||+|+||+|+ |++++||||+|+|+++++||++|||++....++..+.++|++|+++|+++++|+++..+.+
T Consensus 1 ~n~~~f~~~~~~p~~L~~~d~~~vDlst~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~~~ 80 (310)
T d1vcfa1 1 KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLER 80 (310)
T ss_dssp CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHHC
T ss_pred CCcccccceEEEcccCCCCCcccCcCCeEECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhcchh
Confidence 58899999999999994 7899999999999999999999999987666777788999999999999999987643333
Q ss_pred H-------HHhcCC-CceeEEeeecCChHHHHHHHHHH-HHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccc
Q 020636 116 E-------VASTGP-GIRFFQLYVYKDRNVVAQLVRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (323)
Q Consensus 116 e-------i~~~~~-~~~~~QLy~~~d~~~~~~~~~~a-~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~ 186 (323)
+ +.+..+ ...++|++.....+...+.+.++ +..++.++.++++++. +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~--------------- 139 (310)
T d1vcfa1 81 PEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQ------EAVQ--------------- 139 (310)
T ss_dssp TTTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHH------HHHT---------------
T ss_pred hhhhcccchHHhcCCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccch------hhhc---------------
Confidence 2 122233 56788988766555544555544 5568999999887642 1000
Q ss_pred cccCCCccccchhhHHHHhhccCC-ccCHHHHHHHHHhcCCCEEEecc---CCHHHHHHHHHcCCCEEEEcCCCCCCC--
Q 020636 187 LDLGKMDEANDSGLAAYVAGQIDR-SLSWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL-- 260 (323)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~pv~vK~i---~~~e~a~~~~~~Gad~i~vs~~gg~~~-- 260 (323)
..++ ...|.+..+....++.|+++|++ .++++++.+.++|+|+|+|+||||++.
T Consensus 140 --------------------~~~~~~~~~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~ 199 (310)
T d1vcfa1 140 --------------------RGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWAR 199 (310)
T ss_dssp --------------------TSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHH
T ss_pred --------------------ccccccccHHHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhh
Confidence 0111 12455666666678999999987 689999999999999999999999653
Q ss_pred ----------------CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 261 ----------------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 261 ----------------~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+.+.++++.|.++.+.. .++|||+||||+++.|++|||++|||+|++||+|+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~-~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~ 268 (310)
T d1vcfa1 200 VEEWVRFGEVRHPELCEIGIPTARAILEVREVL-PHLPLVASGGVYTGTDGAKALALGADLLAVARPLLR 268 (310)
T ss_dssp HHHTC--------CCTTCSCBHHHHHHHHHHHC-SSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHH
T ss_pred cccccccCchhhhhhhhcchHHHHHHHHHHhhc-CCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHH
Confidence 22466778888887664 479999999999999999999999999999999975
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.89 E-value=7.2e-23 Score=194.47 Aligned_cols=220 Identities=20% Similarity=0.219 Sum_probs=152.4
Q ss_pred hhcccccccccc-cCCCCCccceee-cCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i-~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|..- ++.+++|++++| .+.++..||+-|||-.. +|..+|.+.+++|...+++- ..++|+..+
T Consensus 9 tfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtV------t~~~mAi~ma~~GGlgVihr--~~~ie~q~~ 80 (388)
T d1eepa_ 9 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQRK 80 (388)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTT------CSHHHHHHHHHHTSEEEECS--SSCHHHHHH
T ss_pred CcccEEEeCCCCCCCHHHceeeEEeeCCEecCCCEEecCCCCC------CCHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 599999999654 455789999999 57899999999999543 45589999999999999984 345555332
Q ss_pred cCC--CceeEEeeecCCh---------------------------------------------------HHHHHHHHHHH
Q 020636 120 TGP--GIRFFQLYVYKDR---------------------------------------------------NVVAQLVRRAE 146 (323)
Q Consensus 120 ~~~--~~~~~QLy~~~d~---------------------------------------------------~~~~~~~~~a~ 146 (323)
... ..+-++.....+. ....+.++.+.
T Consensus 81 ~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~ 160 (388)
T d1eepa_ 81 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELV 160 (388)
T ss_dssp HHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHH
T ss_pred HHHHhhhccccccccccCccccccchhhhhhhhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCCHHHHHHHHHHH
Confidence 100 0000000000000 00011122222
Q ss_pred HcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc-C
Q 020636 147 RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-K 225 (323)
Q Consensus 147 ~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~ 225 (323)
++|++.++| |+.+ ++.....+.++++++.+ +
T Consensus 161 ~aG~D~ivI--D~Ah----------------------------------------------G~s~~~~~~i~~ik~~~~~ 192 (388)
T d1eepa_ 161 KAHVDILVI--DSAH----------------------------------------------GHSTRIIELIKKIKTKYPN 192 (388)
T ss_dssp HTTCSEEEE--CCSC----------------------------------------------CSSHHHHHHHHHHHHHCTT
T ss_pred hhccceeee--eccc----------------------------------------------cchHHHHHHHHHHHHHCCC
Confidence 233333332 1111 11222356789998877 6
Q ss_pred CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC------CCCCcchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHH
Q 020636 226 LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKA 298 (323)
Q Consensus 226 ~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~ka 298 (323)
+||++..+.|.+.++.++++|||+|.|.-.+|.. ...+.|.+..+.++.+.... .+|||+||||+++.|+.||
T Consensus 193 v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KA 272 (388)
T d1eepa_ 193 LDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKA 272 (388)
T ss_dssp CEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHH
T ss_pred CceeeccccCHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeee
Confidence 8999999999999999999999999997555532 23457788888888777644 7999999999999999999
Q ss_pred HHcCCCEEEEccccccCcc
Q 020636 299 LALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 299 l~lGAd~V~iG~~~~~~~~ 317 (323)
|++|||+||+|++|.++.+
T Consensus 273 la~GAd~VMlG~~lAg~~E 291 (388)
T d1eepa_ 273 IAAGADSVMIGNLFAGTKE 291 (388)
T ss_dssp HHHTCSEEEECHHHHTBTT
T ss_pred EEeccceeecchhhhcccC
Confidence 9999999999999998764
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.88 E-value=6e-22 Score=186.13 Aligned_cols=219 Identities=19% Similarity=0.216 Sum_probs=158.9
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||+|.|+|... ++.+++|++++|- ...+..||+.|||-.. ++..+|.+..++|...+++-+ .+.++..+
T Consensus 13 ~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV------~~~~mA~~ls~~Gglgvlhr~--~~~~e~~~ 84 (365)
T d1zfja1 13 TFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTV------TGSKMAIAIARAGGLGVIHKN--MSITEQAE 84 (365)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHTTCEEEECCS--SCHHHHHH
T ss_pred CcceEEEeCCCCCcCHhHceeeEEeeCCcccCCCEEECCCCCc------CCHHHHHHHHHCCCceEEcCc--cCHHHHHH
Confidence 699999999644 4457899999995 6799999999999543 345899999999999999864 34444332
Q ss_pred cC------CCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCc
Q 020636 120 TG------PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (323)
Q Consensus 120 ~~------~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
.. .....+..-....++. .+.++.+-++|++.|+| |....
T Consensus 85 ~~~~~~~~~~~~~v~aavGv~~~~-~er~~~l~~agvd~ivI--D~A~G------------------------------- 130 (365)
T d1zfja1 85 EVRKVKRSEGRLLVAAAVGVTSDT-FERAEALFEAGADAIVI--DTAHG------------------------------- 130 (365)
T ss_dssp HHHHHHHHTSCBCCEEEECSSTTH-HHHHHHHHHHTCSEEEE--CCSCT-------------------------------
T ss_pred HhhhhhhccCceEEEEEeccCchH-HHHHHHHHHcCCCEEEE--ECCcc-------------------------------
Confidence 11 1122222222223322 24455566789998875 43320
Q ss_pred cccchhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC------CCCcch
Q 020636 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPAT 266 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~------~~~~~~ 266 (323)
+.....+.++++|+.. +.|+++..+.|.+.++.+.++|||+|.|.-.+|... -.+.|.
T Consensus 131 ---------------~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq 195 (365)
T d1zfja1 131 ---------------HSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQ 195 (365)
T ss_dssp ---------------TCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCH
T ss_pred ---------------cccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcceeeeeccc
Confidence 1112245678888877 689999999999999999999999999965555322 235677
Q ss_pred HHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 267 IMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 267 ~~~l~~i~~~~~-~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+..+.++.+... -++|||+||||+++.|++|||++|||+||+|++|.++.+
T Consensus 196 ~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~E 247 (365)
T d1zfja1 196 VTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDE 247 (365)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSS
T ss_pred hhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEecchhccccC
Confidence 887777765442 268999999999999999999999999999999998764
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.88 E-value=2e-22 Score=190.55 Aligned_cols=219 Identities=19% Similarity=0.225 Sum_probs=155.7
Q ss_pred hhcccccccccc-cCCCCCccceee-cCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i-~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|..- ++.+++|++++| ....+..||+-|||... ++..+|.+..++|...+++.+ .+.|+..+
T Consensus 15 tfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtV------t~~~mA~als~~GGLGvLhr~--~~~e~~~~ 86 (378)
T d1jr1a1 15 TYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTV------TEAGMAIAMALTGGIGFIHHN--CTPEFQAN 86 (378)
T ss_dssp CGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTT------CSHHHHHHHHHHTCEEEECCS--SCHHHHHH
T ss_pred CcccEEEeCCCCCCcHHHceeeeEEECCccCCCCEEECCCCCc------CCHHHHHHHHHCCCeeEEcCC--CCHHHHHH
Confidence 389999999753 344689999999 56789999999999653 344899999999999999864 34444322
Q ss_pred ----c---CCCceeE-----Eee----ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccc
Q 020636 120 ----T---GPGIRFF-----QLY----VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (323)
Q Consensus 120 ----~---~~~~~~~-----QLy----~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~ 183 (323)
. ...+... +|. .... +...+.++...++|++.+++. .+..
T Consensus 87 ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~-~~~~~~~~~l~~agv~vi~id--~a~g--------------------- 142 (378)
T d1jr1a1 87 EVRKVKKYEQYPLASKDAKKQLLCGAAIGTH-EDDKYRLDLLALAGVDVVVLD--SSQG--------------------- 142 (378)
T ss_dssp HHHHHHTSCCCTTCCBCTTSCBCCEEEECSS-THHHHHHHHHHHHTCCEEEEC--CSSC---------------------
T ss_pred HHheehhhhhCcccccccccCEEEEEEeccC-HHHHHHHHHHHhhccceEeee--ccCc---------------------
Confidence 1 1111100 111 1111 222334455567888877643 3321
Q ss_pred ccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCC-
Q 020636 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD- 261 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~- 261 (323)
+.....+.++++++.. ++|+++..+.|.+.|+.+.++|||+|.|...+|....
T Consensus 143 -------------------------~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctT 197 (378)
T d1jr1a1 143 -------------------------NSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICIT 197 (378)
T ss_dssp -------------------------CSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCH
T ss_pred -------------------------cchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeecccccccccc
Confidence 0111244677888877 6889999999999999999999999999765553222
Q ss_pred -----CCcchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 262 -----YVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 262 -----~~~~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.+.|.+..+.++.+.... ++|||+||||+++.|++|||++|||+||+|++|.++.+
T Consensus 198 r~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~E 259 (378)
T d1jr1a1 198 QEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTE 259 (378)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred ccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeeecceeeeeec
Confidence 245677777777665532 69999999999999999999999999999999998754
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1.3e-21 Score=181.95 Aligned_cols=217 Identities=21% Similarity=0.276 Sum_probs=154.0
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|... ...+++|++|.|- ...++.||+.|||... ++..+|.+..++|...+++... +.++..+
T Consensus 6 tfdDVllvP~~s~~~sr~vdl~t~lt~~l~~~iPIIaa~MdtV------~~~~mA~als~~GGlGvi~r~~--~~e~~~~ 77 (330)
T d1vrda1 6 TFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTV------TEAALAKALAREGGIGIIHKNL--TPDEQAR 77 (330)
T ss_dssp CGGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTT------CSHHHHHHHHTTTCEEEECSSS--CHHHHHH
T ss_pred ccccEEEeCCCCCcccccceEEEEEecCcccCCCEEeCCCCCc------CCHHHHHHHHHCCCeEEeeccc--chhhhHH
Confidence 599999999764 3345789999985 5688999999999654 3458999999999999998643 3333222
Q ss_pred ----cCC--CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCc
Q 020636 120 ----TGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (323)
Q Consensus 120 ----~~~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
... .....-+ ..+++ ..+.++.+-++|++.++| |....
T Consensus 78 ~i~~vk~~~~~v~~~v--gv~~~-~~e~~~~li~agvd~ivI--d~A~G------------------------------- 121 (330)
T d1vrda1 78 QVSIVKKTRLLVGAAV--GTSPE-TMERVEKLVKAGVDVIVI--DTAHG------------------------------- 121 (330)
T ss_dssp HHHHHHTCCBCCEEEE--CSSTT-HHHHHHHHHHTTCSEEEE--CCSCC-------------------------------
T ss_pred HHHHHhhhccEEEEEE--ecCHH-HHHHHHHHHHCCCCEEEE--ecCCC-------------------------------
Confidence 111 1112222 22333 234566666789987775 33220
Q ss_pred cccchhhHHHHhhccCCccCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC------CCCcch
Q 020636 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPAT 266 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~------~~~~~~ 266 (323)
++....+.++++|+.. ++|+++..+.+.+.++.+.++|||+|.|.-.+|... -.+.|.
T Consensus 122 ---------------~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~ 186 (330)
T d1vrda1 122 ---------------HSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ 186 (330)
T ss_dssp ---------------SSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred ---------------CchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccceecccccc
Confidence 1112245678888776 689999999999999999999999999954434211 123556
Q ss_pred HHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 267 IMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 267 ~~~l~~i~~~~~-~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+..+.++.+... -++|||++|||+++.|++|||++|||+||+|++|.++.+
T Consensus 187 ~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E 238 (330)
T d1vrda1 187 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEE 238 (330)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTT
T ss_pred chhHHHHHHHHHhcCceEEecCCcccCCchheeeeccCceeeecchheeecc
Confidence 666656554432 279999999999999999999999999999999998754
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=99.86 E-value=2.3e-21 Score=182.49 Aligned_cols=217 Identities=20% Similarity=0.200 Sum_probs=155.6
Q ss_pred hhcccccccccc--cC-CCCCccceeec--------CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCC
Q 020636 42 AFSRILFRPRIL--ID-VSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS 110 (323)
Q Consensus 42 ~~~~i~l~pr~l--~~-~~~~d~~t~i~--------g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s 110 (323)
.||++.|+|... .. .+++|++++|. ++++..||+-|||-.. ++..+|.+..++|...+++-+
T Consensus 10 tFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTV------t~~~mA~~la~~GglgvihR~- 82 (362)
T d1pvna1 10 TFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSV------SGEKMAIALAREGGISFIFGS- 82 (362)
T ss_dssp CGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTT------CSHHHHHHHHHTTCEEEECCS-
T ss_pred CccceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCCCc------CCHHHHHHHHHCCCEEEEeec-
Confidence 599999999864 32 68999999873 5678999999999543 456899999999999999853
Q ss_pred CCCHHHHHhc----CCC-ceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccccc
Q 020636 111 TSSVEEVAST----GPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 185 (323)
Q Consensus 111 ~~~~eei~~~----~~~-~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~ 185 (323)
.++|+..+. ... ..........+ ..+.++.+.++|++.+++ |+.+. +
T Consensus 83 -~~ie~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~ag~d~i~I--DvAhG----------~------------ 134 (362)
T d1pvna1 83 -QSIESQAAMVHAVKNFRYLVGAGINTRD---FRERVPALVEAGADVLCI--DSSDG----------F------------ 134 (362)
T ss_dssp -SCHHHHHHHHHHHHTCCCCCEEEECSSS---HHHHHHHHHHHTCSEEEE--CCSCC----------C------------
T ss_pred -CCHHHHHHHhhhhhhcccccccccchhh---hHHHHHHHhhcCceEEee--chhcc----------c------------
Confidence 556654432 111 11111111122 234455566788888774 44331 0
Q ss_pred ccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhc--CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC---
Q 020636 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--- 260 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~--- 260 (323)
.....+.++++++.. +.||+++.+.|.|.++.+.++|+|+|.|.-.+|...
T Consensus 135 ------------------------~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr 190 (362)
T d1pvna1 135 ------------------------SEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITR 190 (362)
T ss_dssp ------------------------BHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHH
T ss_pred ------------------------hhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccccccccch
Confidence 001234577776655 478999999999999999999999999976555432
Q ss_pred ---CCCcchHHHHHHHHHHhc-------CCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 261 ---DYVPATIMALEEVVKATQ-------GRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 261 ---~~~~~~~~~l~~i~~~~~-------~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
.-+.|.+.++.++..+.. ..+|||+||||+++.|++|||++|||+||+|++|.++.+
T Consensus 191 ~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~E 257 (362)
T d1pvna1 191 EQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEE 257 (362)
T ss_dssp HHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTT
T ss_pred hhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcccc
Confidence 235678888888765432 258999999999999999999999999999999998654
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=6.3e-21 Score=175.75 Aligned_cols=201 Identities=22% Similarity=0.184 Sum_probs=155.9
Q ss_pred ceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCC-C-------HHHHHhc-CCCceeEEeeecCChHHHHHHHH
Q 020636 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-------VEEVAST-GPGIRFFQLYVYKDRNVVAQLVR 143 (323)
Q Consensus 73 Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~-~-------~eei~~~-~~~~~~~QLy~~~d~~~~~~~~~ 143 (323)
.|.+|||.+. ++.++++.|+++|...++++|.+. . .+++... .+.|..+||+ ..|++.+.+..+
T Consensus 2 ki~LAPM~g~------td~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~~~~~~~~e~p~~~Ql~-g~~p~~~~~aa~ 74 (305)
T d1vhna_ 2 KVGLAPMAGY------TDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIF-GSEPNELSEAAR 74 (305)
T ss_dssp EEEECCCTTT------CSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEE-CSCHHHHHHHHH
T ss_pred eEEEECcCCC------ccHHHHHHHHHHCcCEEEECCEEechhhhCChhhHhhccCCCCCCeEEEEe-ccchhhhhhhhh
Confidence 4789999875 577999999999999999987431 1 1222221 2378999998 578888887776
Q ss_pred HHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHh
Q 020636 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (323)
Q Consensus 144 ~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 223 (323)
.++ .|++.|.+|++||+. +-.+. +.|+++ ..+|++..+.++.+++.
T Consensus 75 ~~~-~~~~~IdlN~GCP~~----~v~~~-----------------------g~Ga~L------l~~p~~~~~iv~~~~~~ 120 (305)
T d1vhna_ 75 ILS-EKYKWIDLNAGCPVR----KVVKE-----------------------GAGGAL------LKDLRHFRYIVRELRKS 120 (305)
T ss_dssp HHT-TTCSEEEEEECCCCH----HHHHT-----------------------TCGGGG------GSCHHHHHHHHHHHHHH
T ss_pred hhh-hheeeeeEEEEecch----hhccc-----------------------ccceee------ccCHHHHHHHhhhhhhh
Confidence 554 599999999999972 11111 122322 24777888889999999
Q ss_pred cCCCEEEecc------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH
Q 020636 224 TKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 297 (323)
Q Consensus 224 ~~~pv~vK~i------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k 297 (323)
+++||.+|.. .+.+.++.+.++|++.|+|+++...+...+++.++.+++++ .++|||++|||.|.+|+.+
T Consensus 121 ~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~----~~ipvi~NGdI~s~~d~~~ 196 (305)
T d1vhna_ 121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLE----KRIPTFVSGDIFTPEDAKR 196 (305)
T ss_dssp CSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSC----CSSCEEEESSCCSHHHHHH
T ss_pred cccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhh----hhhhhhcccccccHHHHHH
Confidence 9999999953 34567899999999999997776666677788888776553 3799999999999999999
Q ss_pred HHH-cCCCEEEEccccccCcch
Q 020636 298 ALA-LGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 298 al~-lGAd~V~iG~~~~~~~~~ 318 (323)
+++ .|||+|||||.++++||.
T Consensus 197 ~l~~tg~dgVMiGRgal~nP~i 218 (305)
T d1vhna_ 197 ALEESGCDGLLVARGAIGRPWI 218 (305)
T ss_dssp HHHHHCCSEEEESGGGTTCTTH
T ss_pred HHHhcCCCeEehhHHHHHhhhH
Confidence 997 699999999999999974
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=2e-19 Score=169.31 Aligned_cols=215 Identities=19% Similarity=0.243 Sum_probs=154.3
Q ss_pred hhcccccccccc-cCCCCCccceeec-CcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHh
Q 020636 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (323)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~~d~~t~i~-g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~ 119 (323)
.||++.|+|..- ++..++|++++|- +.++..||+.|||-.. ++..+|.+.+++|...+++-+ .++|+..+
T Consensus 14 tfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV------~~~~mA~~la~~Gglgvlhr~--~~~e~~~~ 85 (368)
T d2cu0a1 14 TFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTV------TEWEMAVAMAREGGLGVIHRN--MGIEEQVE 85 (368)
T ss_dssp CGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHTTCEEEECSS--SCHHHHHH
T ss_pred CcccEEEeCCCCcCchhhceeeEEeeCCcccCCCEEeCCCCCc------CCHHHHHHHHHCCCeeEeccc--CCHHHHHH
Confidence 699999999754 3445789999996 5799999999998543 455899999999999999954 44554321
Q ss_pred ----c-----CC-------CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCcccccc
Q 020636 120 ----T-----GP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (323)
Q Consensus 120 ----~-----~~-------~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~ 183 (323)
. .+ ....+-... .++.. +.++.+.++|++.|+|.+ .. |
T Consensus 86 ~v~~v~~~e~~~~~~~d~~~~~~v~~~~--~~~~~-~r~~~l~~aGvd~ivID~--A~-G-------------------- 139 (368)
T d2cu0a1 86 QVKRVKRAEKYKNAVRDENGELLVAAAV--SPFDI-KRAIELDKAGVDVIVVDT--AH-A-------------------- 139 (368)
T ss_dssp HHHHHHTCCCCTTCCBCTTSCBCCEEEE--CTTCH-HHHHHHHHTTCSEEEEEC--SC-C--------------------
T ss_pred HHHhhhhhhhccccccccCccEEEEecc--ChHHH-HHHHHHHHcCCCEEEecC--cc-c--------------------
Confidence 1 01 111111111 12112 234455678999887643 22 0
Q ss_pred ccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCC---
Q 020636 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--- 260 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~--- 260 (323)
+.....+.++++++..+.|+++..+.|.+.++.+ .|||+|.|.-++|...
T Consensus 140 -------------------------h~~~~i~~lK~ir~~~~~~vIaGNVaT~e~~~~l--~gaD~VkVGIG~Gs~CTTr 192 (368)
T d2cu0a1 140 -------------------------HNLKAIKSMKEMRQKVDADFIVGNIANPKAVDDL--TFADAVKVGIGPGSICTTR 192 (368)
T ss_dssp -------------------------CCHHHHHHHHHHHHTCCSEEEEEEECCHHHHTTC--TTSSEEEECSSCSTTBCHH
T ss_pred -------------------------chhhhhhhhhhhhhhcccceeeccccCHHHHHhh--hcCcceeecccCcccccch
Confidence 0111245688999999999999999999988654 6999999976555422
Q ss_pred ---CCCcchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 261 ---DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 261 ---~~~~~~~~~l~~i~~~~~~-~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
-.+.|.+.++.++.+.... .+|||+||||+++.|+.|||++|||+||+|++|.++.+
T Consensus 193 ~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~E 253 (368)
T d2cu0a1 193 IVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKE 253 (368)
T ss_dssp HHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred hhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhccccc
Confidence 2357788888887765422 69999999999999999999999999999999988654
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.81 E-value=2.7e-19 Score=165.06 Aligned_cols=221 Identities=22% Similarity=0.274 Sum_probs=149.1
Q ss_pred cceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceeec-CCCC----------------------------
Q 020636 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST---------------------------- 111 (323)
Q Consensus 61 ~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-~~s~---------------------------- 111 (323)
++|+|+|.+|++||++|+.... .+....+.+.++|..+++. +.+.
T Consensus 1 Lsv~~~Gl~l~nPi~~Asg~~~------~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~ 74 (312)
T d1gtea2 1 ISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSS 74 (312)
T ss_dssp CCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSC
T ss_pred CcEEECCEEcCCCcEECCcCCC------CCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCcccccccccc
Confidence 6899999999999999973332 3456888888999877653 2210
Q ss_pred ---------CC----HHHHHh---cCC-CceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccC
Q 020636 112 ---------SS----VEEVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT 174 (323)
Q Consensus 112 ---------~~----~eei~~---~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~ 174 (323)
.. ++++.+ ..+ ...........+.+...+.++.+++.|++++.+|+.||.... .++...
T Consensus 75 ~~n~~g~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~-~~~~~~--- 150 (312)
T d1gtea2 75 FLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMG-ERGMGL--- 150 (312)
T ss_dssp EEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC------S---
T ss_pred ccccccccccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCccc-ccccch---
Confidence 00 112211 122 233334444556777777788888999999999999997311 001000
Q ss_pred CCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc---CCH-HHHHHHHHcCCCEE
Q 020636 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV---LTA-EDARIAVQAGAAGI 250 (323)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i---~~~-e~a~~~~~~Gad~i 250 (323)
....+++...+.++++++.++.||++|.. .+. +.++.+.++|+|+|
T Consensus 151 ------------------------------~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi 200 (312)
T d1gtea2 151 ------------------------------ACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGV 200 (312)
T ss_dssp ------------------------------BGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEE
T ss_pred ------------------------------hhhhhHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHHHhcccce
Confidence 00123444456788999999999999954 333 44778889999999
Q ss_pred EEcCCCC-CC---C---------------CC---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCC
Q 020636 251 IVSNHGA-RQ---L---------------DY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 251 ~vs~~gg-~~---~---------------~~---~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd 304 (323)
++.|..+ +. . .+ + +.+++.+.++++.++ ++|||++|||++++|+.++|++|||
T Consensus 201 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~-~ipIi~~GGI~~~~d~~~~l~aGA~ 279 (312)
T d1gtea2 201 TATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALP-GFPILATGGIDSAESGLQFLHSGAS 279 (312)
T ss_dssp EECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHST-TCCEEEESSCCSHHHHHHHHHTTCS
T ss_pred EEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcC-CCcEEEEcCCCCHHHHHHHHHcCCC
Confidence 9987521 10 0 01 1 234677888887774 5999999999999999999999999
Q ss_pred EEEEccccccC--cchhhhc
Q 020636 305 GIFVSIMPCQC--PLTEKIN 322 (323)
Q Consensus 305 ~V~iG~~~~~~--~~~~~~~ 322 (323)
+|+|||+++.. ...++|+
T Consensus 280 ~Vqv~ta~~~~G~~~i~~i~ 299 (312)
T d1gtea2 280 VLQVCSAVQNQDFTVIQDYC 299 (312)
T ss_dssp EEEESHHHHTSCTTHHHHHH
T ss_pred eeEECHhhhccChHHHHHHH
Confidence 99999998754 3344443
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.75 E-value=2.2e-18 Score=158.32 Aligned_cols=216 Identities=19% Similarity=0.182 Sum_probs=145.1
Q ss_pred CCCccceeecCcccccceEECcccccccCCcHHHHHHHHHHHHcCCceee-cCC--------------------------
Q 020636 57 SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW-------------------------- 109 (323)
Q Consensus 57 ~~~d~~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-s~~-------------------------- 109 (323)
++..++|+|+|.+|++||++|+- ... ....+.+.+...|..+++ .+.
T Consensus 3 ~~~~L~~~~~Gl~l~nPi~~aAG-~~~-----~~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~ 76 (311)
T d1ep3a_ 3 ENNRLSVKLPGLDLKNPIIPASG-CFG-----FGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGL 76 (311)
T ss_dssp CCTTTCEEETTEEESSSEEECTT-SST-----TSTTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCC
T ss_pred CCCcceEEECCEEcCCCcEECCC-CCC-----CCHHHHHhhhhcCccEEEEeeEcccccCCCCCCeEeeecccccccccc
Confidence 57889999999999999999952 111 111244444455554442 111
Q ss_pred CCCCHHHHH--------hcC-CCceeEEeeecCChHHHHHHHHHH-HHcCCcEEEEecCCCCCCchHHHHhhccCCCCcc
Q 020636 110 STSSVEEVA--------STG-PGIRFFQLYVYKDRNVVAQLVRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFL 179 (323)
Q Consensus 110 s~~~~eei~--------~~~-~~~~~~QLy~~~d~~~~~~~~~~a-~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~ 179 (323)
.+..++.+. +.. ..+...|+.. .+++...+.+++. +.+|+++|.+++.||.... +.
T Consensus 77 ~~~g~~~~~~~~~~~~~~~~~~~pii~si~~-~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~-------~~------ 142 (311)
T d1ep3a_ 77 QNPGLEVIMTEKLPWLNENFPELPIIANVAG-SEEADYVAVCAKIGDAANVKAIELNISCPNVKH-------GG------ 142 (311)
T ss_dssp CBCCHHHHHHTHHHHHHHHCTTSCEEEEECC-SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGG-------TT------
T ss_pred cchhHHHHhhhhhhhhhcccCCCcccccccc-hhhhHHHHHHHHHhhcccccccccccCCCcccc-------cc------
Confidence 112233221 122 2578889864 5566555666655 3468999999999986210 00
Q ss_pred ccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc----CCHHHHHHHHHcCCCEEEEcCC
Q 020636 180 TLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV----LTAEDARIAVQAGAAGIIVSNH 255 (323)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i----~~~e~a~~~~~~Gad~i~vs~~ 255 (323)
. ....++....+.++++++..+.|+.+|.. ...+.++.+.++|+|+++++|.
T Consensus 143 --~----------------------~~~~~~~~~~~~~~~v~~~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~ 198 (311)
T d1ep3a_ 143 --Q----------------------AFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINT 198 (311)
T ss_dssp --E----------------------EGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCC
T ss_pred --c----------------------ccccCHHHHHHHHHHHHhccCCCeeeeecccccchHHHHHHHHHhhhheeEEEee
Confidence 0 00123334455677788888999999964 3567788889999999999875
Q ss_pred CCCC---------C--C-----CC----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 256 GARQ---------L--D-----YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 256 gg~~---------~--~-----~~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.. . . .+ +.+++.+.++++.+ ++|||++|||+|++|+.+++.+|||+||+||+++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~--~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~ 276 (311)
T d1ep3a_ 199 LMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFAD 276 (311)
T ss_dssp EEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHC
T ss_pred ccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhc--ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcC
Confidence 3211 0 0 11 23467777777766 899999999999999999999999999999999998
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|+.
T Consensus 277 P~i 279 (311)
T d1ep3a_ 277 PFV 279 (311)
T ss_dssp TTH
T ss_pred ChH
Confidence 875
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.69 E-value=1.6e-16 Score=145.96 Aligned_cols=111 Identities=19% Similarity=0.116 Sum_probs=79.4
Q ss_pred cCHHHHHHHHHhcCCCEEEeccC--CHH----HHHHHHHcCCCEEEEcCCCCCC-----------C-----CCC------
Q 020636 212 LSWKDVKWLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQ-----------L-----DYV------ 263 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~--~~e----~a~~~~~~Gad~i~vs~~gg~~-----------~-----~~~------ 263 (323)
...+.++++++..+.|+++|... +.. .++.+.+.|++++...|..... . .++
T Consensus 145 ~~~~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l 224 (311)
T d1juba_ 145 ATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYI 224 (311)
T ss_dssp HHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGG
T ss_pred HHHHHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCcccccc
Confidence 34556889999899999999763 222 2556678889998876642210 0 011
Q ss_pred -cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc--cCcchhhhc
Q 020636 264 -PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC--QCPLTEKIN 322 (323)
Q Consensus 264 -~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~--~~~~~~~~~ 322 (323)
+.++..+.++.+.+..++|||++|||+|++|+++++.+|||+|+++|.++ +....++|+
T Consensus 225 ~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~i~~i~ 286 (311)
T d1juba_ 225 KPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRII 286 (311)
T ss_dssp HHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHH
T ss_pred CchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcChHHHHHHH
Confidence 22455666676666568999999999999999999999999999999987 344444443
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.60 E-value=6.8e-15 Score=140.12 Aligned_cols=98 Identities=21% Similarity=0.225 Sum_probs=75.1
Q ss_pred CCCEEEeccC--C----HHHHHHHHHcCCCEEEEcCCCC-CC-------CCCC-------cchHHHHHHHHHHhcCCCeE
Q 020636 225 KLPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGA-RQ-------LDYV-------PATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 225 ~~pv~vK~i~--~----~e~a~~~~~~Gad~i~vs~~gg-~~-------~~~~-------~~~~~~l~~i~~~~~~~~pv 283 (323)
..|+++|... + .+.+..+.+.|+|+|+++|... +. ..++ +.++..+.++.+.+++++||
T Consensus 266 ~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipI 345 (409)
T d1tv5a1 266 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPI 345 (409)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCE
T ss_pred CCceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceE
Confidence 3479999764 3 3447788899999999988542 11 1122 23567788888888778999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEccccc--cCcchhhhc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSIMPC--QCPLTEKIN 322 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~~~~--~~~~~~~~~ 322 (323)
|+.|||.|++|+++.+.+||++|+|||.++ +....++|+
T Consensus 346 IGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~ 386 (409)
T d1tv5a1 346 IASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIK 386 (409)
T ss_dssp EEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHH
T ss_pred EEECCCCCHHHHHHHHHcCCCHHhhhhHHHhcChHHHHHHH
Confidence 999999999999999999999999999875 445566654
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7.1e-15 Score=138.03 Aligned_cols=100 Identities=26% Similarity=0.361 Sum_probs=74.9
Q ss_pred hcCCCEEEeccC--CHH----HHHHHHHcCCCEEEEcCCCCC-CC---------CC---C----cchHHHHHHHHHHhcC
Q 020636 223 ITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGAR-QL---------DY---V----PATIMALEEVVKATQG 279 (323)
Q Consensus 223 ~~~~pv~vK~i~--~~e----~a~~~~~~Gad~i~vs~~gg~-~~---------~~---~----~~~~~~l~~i~~~~~~ 279 (323)
..+.|+++|... +.. -++.+.++|+|+|++.|.... .. .+ + +..+..+..+.+.++.
T Consensus 218 ~~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~ 297 (367)
T d1d3ga_ 218 VHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQG 297 (367)
T ss_dssp GGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTT
T ss_pred ccCCccccccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCC
Confidence 346899999763 332 377888999999999875311 00 11 1 2345677778777766
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc--cCcchhhhc
Q 020636 280 RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC--QCPLTEKIN 322 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~--~~~~~~~~~ 322 (323)
++|||+.|||.+++|+.+.|.+||++|+|||.++ +....++|+
T Consensus 298 ~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~Gp~ii~~I~ 342 (367)
T d1d3ga_ 298 RVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVK 342 (367)
T ss_dssp CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHH
T ss_pred CccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHhcCcHHHHHHH
Confidence 8999999999999999999999999999999864 555555554
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.55 E-value=3.1e-14 Score=124.31 Aligned_cols=99 Identities=20% Similarity=0.160 Sum_probs=82.8
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcch-HHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.|+.+++++..+...++.+.+.+.++++.+.++|+|+|.+++++.+..+..... ...+.++.... ++|||++|||+|
T Consensus 117 ~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GGI~t 194 (230)
T d1yxya1 117 IASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGKIHS 194 (230)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESCCCS
T ss_pred HHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcC--CCeEEEeCCCCC
Confidence 477889999988888999999999999999999999999998887655543332 22344455555 899999999999
Q ss_pred HHHHHHHHHcCCCEEEEccccc
Q 020636 292 GTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~ 313 (323)
++|+.+++++|||+|+|||++.
T Consensus 195 ~~d~~~al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 195 PEEAKKINDLGVAGIVVGGAIT 216 (230)
T ss_dssp HHHHHHHHTTCCSEEEECHHHH
T ss_pred HHHHHHHHHcCCCEEEEChhhc
Confidence 9999999999999999999875
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1.4e-13 Score=127.54 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=75.5
Q ss_pred HHHhcCCCEEEeccC--C----HHHHHHHHHcCCCEEEEcCCCC-CCC---------CCC-------cchHHHHHHHHHH
Q 020636 220 LQTITKLPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGA-RQL---------DYV-------PATIMALEEVVKA 276 (323)
Q Consensus 220 i~~~~~~pv~vK~i~--~----~e~a~~~~~~Gad~i~vs~~gg-~~~---------~~~-------~~~~~~l~~i~~~ 276 (323)
.+...++|+++|... + .+-+..+.+.|++++...|... +.. .++ +.++..+.++.+.
T Consensus 206 ~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~ 285 (336)
T d1f76a_ 206 AMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLE 285 (336)
T ss_dssp HHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHH
T ss_pred hhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 334457999999763 2 2236677789999999877421 110 111 2345677788887
Q ss_pred hcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc--cCcchhhhc
Q 020636 277 TQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC--QCPLTEKIN 322 (323)
Q Consensus 277 ~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~--~~~~~~~~~ 322 (323)
++.++|||+.|||.|++|+.+.+.+||++|+|||.|+ +....++|+
T Consensus 286 ~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~~Gp~ii~~I~ 333 (336)
T d1f76a_ 286 LNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIV 333 (336)
T ss_dssp HTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHHHHH
T ss_pred cCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHhcChHHHHHHH
Confidence 7778999999999999999999999999999999974 344555554
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.55 E-value=6e-14 Score=121.62 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCC----CCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD----YVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~----~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
++.++++++....++++..+.+.++++.+.+.|+|+|.+.+++++... .....++.+.++.+.+ ++|||++|||
T Consensus 107 ~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~iPVia~GGI 184 (222)
T d1y0ea_ 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGNV 184 (222)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESSC
T ss_pred HHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcC--CCcEEEeCCC
Confidence 566888888888888999999999999999999999999888654332 2334578888888877 8999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcccccc
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
+|++|+.+++++|||+|++||++..
T Consensus 185 ~t~~d~~~~~~~GAdgV~iGsAi~r 209 (222)
T d1y0ea_ 185 ITPDMYKRVMDLGVHCSVVGGAITR 209 (222)
T ss_dssp CSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CCHHHHHHHHHcCCCEEEEchhhcC
Confidence 9999999999999999999998764
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=99.49 E-value=8.2e-13 Score=122.43 Aligned_cols=231 Identities=16% Similarity=0.152 Sum_probs=145.1
Q ss_pred eeecCcccccceEECccccccc----CCc-HHHHHHHHHHHHcCCceeecCCCC--------------CC------HHHH
Q 020636 63 TTVLGFKISMPIMIAPTAMQKM----AHP-EGEYATARAASAAGTIMTLSSWST--------------SS------VEEV 117 (323)
Q Consensus 63 t~i~g~~~~~Pi~iaPm~~~~l----~~~-~~e~~~a~aa~~~G~~~~vs~~s~--------------~~------~eei 117 (323)
.+|.+.++++-|++|||+...- +.| +..+..-+.-++-|.++++++... .+ +.++
T Consensus 8 ~~ig~~~lkNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~~~d~~i~~~k~l 87 (337)
T d1z41a1 8 ITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKL 87 (337)
T ss_dssp EEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHH
T ss_pred ceECCEEECCCEEeCccCCCccCCCCCCCCHHHHHHHHHHHcCCceEEEECcEEEccccccccCccccccHHHHHHHHHH
Confidence 5788999999999999964211 122 123444445556688887776311 01 1122
Q ss_pred Hh---cCCCceeEEeeecC---------------------------Ch-------HHHHHHHHHHHHcCCcEEEEecCCC
Q 020636 118 AS---TGPGIRFFQLYVYK---------------------------DR-------NVVAQLVRRAERAGFKAIALTVDTP 160 (323)
Q Consensus 118 ~~---~~~~~~~~QLy~~~---------------------------d~-------~~~~~~~~~a~~~G~~al~itvd~p 160 (323)
.+ ..+...++||.... +. +...+..++|+++|++++-|+...
T Consensus 88 ~~avh~~G~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ah- 166 (337)
T d1z41a1 88 TEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAH- 166 (337)
T ss_dssp HHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECT-
T ss_pred HHHhhccccccchhhhcCCCcccccCCCCCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccC-
Confidence 22 13456788985421 11 223344567788999999998532
Q ss_pred CCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEecc-------
Q 020636 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV------- 233 (323)
Q Consensus 161 ~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~i------- 233 (323)
|+ +-+.|- .+..+.| ++.-+.++. ....+..|.++.+|+.++.|++++..
T Consensus 167 --Gy----Ll~qFl-Sp~~N~R----------tDeYGGs~e------nR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~ 223 (337)
T d1z41a1 167 --GY----LIHEFL-SPLSNHR----------TDEYGGSPE------NRYRFLREIIDEVKQVWDGPLFVRVSASDYTDK 223 (337)
T ss_dssp --TS----HHHHHH-CTTTCCC----------CSTTSSSHH------HHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTT
T ss_pred --cc----eeeeec-CCccccc----------cccccchhh------hhhhHHHHHHHHHhhhhcccceEEecccccccC
Confidence 22 112221 1111100 000111111 11235678899999999999999843
Q ss_pred -CCHHH----HHHHHHcCCCEEEEcCCCCCCCC--CCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CC
Q 020636 234 -LTAED----ARIAVQAGAAGIIVSNHGARQLD--YVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-AS 304 (323)
Q Consensus 234 -~~~e~----a~~~~~~Gad~i~vs~~gg~~~~--~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad 304 (323)
.+.++ ++.+.++|+|.+.++.......+ ..+ ...+....+++.+ ++||++.|+|.+++++.++|+.| ||
T Consensus 224 g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~D 301 (337)
T d1z41a1 224 GLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQNGRAD 301 (337)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHTTSCS
T ss_pred ccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhc--CceEEEeCCcCCHHHHHHHHHCCCcc
Confidence 34433 67788999999999764332211 111 2345666788888 89999999999999999999999 99
Q ss_pred EEEEccccccCcchh
Q 020636 305 GIFVSIMPCQCPLTE 319 (323)
Q Consensus 305 ~V~iG~~~~~~~~~~ 319 (323)
.|++||+|+.+|+|-
T Consensus 302 ~V~~gR~~iadPd~~ 316 (337)
T d1z41a1 302 LIFIGRELLRDPFFA 316 (337)
T ss_dssp EEEECHHHHHCTTHH
T ss_pred eehhhHHHHhCchHH
Confidence 999999999999884
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.47 E-value=2.1e-13 Score=125.03 Aligned_cols=112 Identities=17% Similarity=0.087 Sum_probs=72.6
Q ss_pred CccCHHHHHHHHHhcCCCEEEeccC--CHHH----HHHHHHcC-CCEEEEcCCCCC---------CC-------CC---C
Q 020636 210 RSLSWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAG-AAGIIVSNHGAR---------QL-------DY---V 263 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~~~pv~vK~i~--~~e~----a~~~~~~G-ad~i~vs~~gg~---------~~-------~~---~ 263 (323)
++...+.++++++..+.|+++|... +... +..+.+.+ ++++...|.-+. +. .+ +
T Consensus 143 ~~~~~~i~~~v~~~~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG 222 (312)
T d2b4ga1 143 FDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGG 222 (312)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEE
T ss_pred HHHHHHHHHHhhccccccceeccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCccc
Confidence 3344567888999889999999763 2222 22222333 444433332110 00 01 1
Q ss_pred c----chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc--Ccchhhhc
Q 020636 264 P----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ--CPLTEKIN 322 (323)
Q Consensus 264 ~----~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~--~~~~~~~~ 322 (323)
+ .++..+.++.+.++ ..+||+.|||+|++|+++.+.+||++|+++|.++. ....++|+
T Consensus 223 ~~l~~~al~~v~~~~~~~~-~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~i~ 286 (312)
T d2b4ga1 223 KYVLPTALANVNAFFRRCP-DKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGPIIFARLN 286 (312)
T ss_dssp GGGHHHHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTHHHHHH
T ss_pred ccccchhhHHHHHHHHHcC-CCceeecCCcCCHHHHHHHHHcCCChheeehhhHhcCcHHHHHHH
Confidence 1 24667777777664 56899999999999999999999999999998863 44455543
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=99.41 E-value=3.1e-12 Score=127.86 Aligned_cols=221 Identities=18% Similarity=0.117 Sum_probs=139.2
Q ss_pred ccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhcC----CCceeEEeeecCChHHHHHHHHH
Q 020636 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG----PGIRFFQLYVYKDRNVVAQLVRR 144 (323)
Q Consensus 69 ~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~~----~~~~~~QLy~~~d~~~~~~~~~~ 144 (323)
.+-.||.++.|+++.| .++.-.+++++++..|+..+.++..- +.+...... .+...+|... ..-....+.+
T Consensus 426 ~I~k~f~isaMSfGAL-S~~A~~aLa~ga~~~g~~~ntGEGG~-~~~~~~~~~~~~~~~~~i~q~as-grfG~~~~~l-- 500 (771)
T d1ea0a2 426 AIRKRFITPGMSMGAL-SPEAHGTLNVAMNRIGAKSDSGEGGE-DPARFRPDKNGDNWNSAIKQVAS-GRFGVTAEYL-- 500 (771)
T ss_dssp HHHTTEEEEECCBTTB-CHHHHHHHHHHHHHTTCEEECCTTCC-CGGGSSBCTTSCBCCCSEEEECS-SCTTCCHHHH--
T ss_pred hhheeecccccccccc-CHHHHHHHHHHHHhcCCeeecCCCCC-ChhhccccCCCcccccccceecC-CcCCcCHHHh--
Confidence 3456999999999876 56788899999999999999998653 223322111 1346788743 3333333333
Q ss_pred HHHcCCcEEEEecCCCCCCchHHHHhhccCCCC-cccc--ccccccccCCCccccchhhHHHHhhccCCcc-CHH----H
Q 020636 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTL--KNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWK----D 216 (323)
Q Consensus 145 a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~ 216 (323)
..+++|-|-+.--...- .|-.+|. |++. ..+.+.+.+. ..+++..++++ +.+ .
T Consensus 501 ---~~~~~ieIK~~QGAKpG------~GG~Lpg~KVt~~IA~~R~~~~G~----------~~iSP~~h~di~siedL~~~ 561 (771)
T d1ea0a2 501 ---NQCRELEIKVAQGAKPG------EGGQLPGFKVTEMIARLRHSTPGV----------MLISPPPHHDIYSIEDLAQL 561 (771)
T ss_dssp ---TSCSEEEEECCCTTSTT------TCCEECGGGCCHHHHHHHTCCTTC----------CEECCSSCTTCSSHHHHHHH
T ss_pred ---cccceeEEeeecccccc------cccccccccCCHHHHHhcCCCCCC----------CccCCCCCCCCCCHHHHHHH
Confidence 35677777664322100 0001221 2221 1111111111 01122223333 333 4
Q ss_pred HHHHHHhc-CCCEEEeccC--C-HHHHHHHHHcCCCEEEEcCCCCCCC--------CCCcchHHHHHHHHHHh-----cC
Q 020636 217 VKWLQTIT-KLPILVKGVL--T-AEDARIAVQAGAAGIIVSNHGARQL--------DYVPATIMALEEVVKAT-----QG 279 (323)
Q Consensus 217 i~~i~~~~-~~pv~vK~i~--~-~e~a~~~~~~Gad~i~vs~~gg~~~--------~~~~~~~~~l~~i~~~~-----~~ 279 (323)
|.++|+.. +.||.||.+. . ...+..+.++|+|.|+++++.|..- +.+.|....|.++.+.+ ++
T Consensus 562 I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~ 641 (771)
T d1ea0a2 562 IYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRH 641 (771)
T ss_dssp HHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHHHcCCCC
Confidence 67778766 6899999763 2 3446666799999999999854221 23556667788877765 45
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 280 RIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
++.++++||++++.|++||++||||+|.+||.++
T Consensus 642 ~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m 675 (771)
T d1ea0a2 642 RVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASL 675 (771)
T ss_dssp TSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHH
Confidence 8999999999999999999999999999999875
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.33 E-value=1.4e-11 Score=114.00 Aligned_cols=231 Identities=11% Similarity=0.063 Sum_probs=138.2
Q ss_pred ceeecCcccccceEECcccccccCCcHHH--HHHHHHHHHcCCceeecCCCC---------------CC------HHHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGE--YATARAASAAGTIMTLSSWST---------------SS------VEEVA 118 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~~~e--~~~a~aa~~~G~~~~vs~~s~---------------~~------~eei~ 118 (323)
-.+|.+.++++.|++|||+... ....++ ...-..-++.|+++++++... .+ +.++.
T Consensus 12 P~~ig~~~l~NRiv~apm~~~~-~~~~~~~~~~~~~~rA~gG~gliite~~~v~~~~~~~~~~~~~~~~d~~i~~~~~l~ 90 (340)
T d1djqa1 12 PIQIGPKTLRNRFYQVPHAIGA-GSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMT 90 (340)
T ss_dssp CEEETTEEESSSEEECCCCCSC-TTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHH
T ss_pred CceECCEEECCCeEeCCCCCCC-CCCCCHHHHHHHHHHhccCeEEEEEEEEEeccccccCCCCCccccceeecchhhhhH
Confidence 3688999999999999998643 333232 344444456688777665321 01 11222
Q ss_pred h---cCCCceeEEeeecC-------------------------------ChHHH-------HHHHHHHHHcCCcEEEEec
Q 020636 119 S---TGPGIRFFQLYVYK-------------------------------DRNVV-------AQLVRRAERAGFKAIALTV 157 (323)
Q Consensus 119 ~---~~~~~~~~QLy~~~-------------------------------d~~~~-------~~~~~~a~~~G~~al~itv 157 (323)
+ ..+...++||+... +.+.+ .+..++|+++||+++-|+.
T Consensus 91 ~~vh~~g~~i~~Ql~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~ 170 (340)
T d1djqa1 91 DEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYG 170 (340)
T ss_dssp HHHHHTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHhhcccceeeEeeeeccccccccccCCcccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHhccceeeeec
Confidence 2 12345677772100 12222 2344677889999999886
Q ss_pred CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC--CCEEEecc--
Q 020636 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK--LPILVKGV-- 233 (323)
Q Consensus 158 d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~pv~vK~i-- 233 (323)
-. |+ +-+.|--| .. +.-++.-+.++. ....+..|.++.||+.++ .||.+|..
T Consensus 171 ah---Gy----Ll~qFls~-~~----------N~R~D~yGGs~e------nR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~ 226 (340)
T d1djqa1 171 AH---SY----LPLQFLNP-YY----------NKRTDKYGGSLE------NRARFWLETLEKVKHAVGSDCAIATRFGVD 226 (340)
T ss_dssp CT---TC----HHHHHHCT-TT----------CCCCSTTSSSHH------HHHHHHHHHHHHHHHHHTTTSEEEEEEEEE
T ss_pred cc---cc----hhhhhhhh-cc----------ccccccccccHH------hhhHHHHHHHHHHHHHHhhhhhceeecccc
Confidence 32 21 11112000 00 000000111111 112356889999999984 67888832
Q ss_pred -------CC----HHHHHHHHHcCCCEEEEcCCCCCC----C-----CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 234 -------LT----AEDARIAVQAGAAGIIVSNHGARQ----L-----DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 234 -------~~----~e~a~~~~~~Gad~i~vs~~gg~~----~-----~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
.. ...+..+.+.|+|.+.++...-.+ . ......+.....+++.+ ++|||+.|||++++
T Consensus 227 ~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~G~i~~~~ 304 (340)
T d1djqa1 227 TVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS--KKPVLGVGRYTDPE 304 (340)
T ss_dssp CSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC--SSCEEECSCCCCHH
T ss_pred ccccCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHc--CCeEEEECCCCCHH
Confidence 11 233567778999999987532111 0 01122345556666666 79999999999999
Q ss_pred HHHHHHHcC-CCEEEEccccccCcchh
Q 020636 294 DVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 294 di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++.++|+.| ||.|++||+|+.+|++-
T Consensus 305 ~a~~~l~~G~aDlV~~gR~~iadPdl~ 331 (340)
T d1djqa1 305 KMIEIVTKGYADIIGCARPSIADPFLP 331 (340)
T ss_dssp HHHHHHHTTSCSBEEESHHHHHCTTHH
T ss_pred HHHHHHHCCCccchhhHHHHHHCccHH
Confidence 999999999 99999999999999764
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=2.5e-11 Score=111.94 Aligned_cols=232 Identities=11% Similarity=0.026 Sum_probs=137.6
Q ss_pred ceeecCcccccceEECcccccccCCc--HHH--HHHHHHHHHcCCceeecCCCCC-----------------C---HHHH
Q 020636 62 NTTVLGFKISMPIMIAPTAMQKMAHP--EGE--YATARAASAAGTIMTLSSWSTS-----------------S---VEEV 117 (323)
Q Consensus 62 ~t~i~g~~~~~Pi~iaPm~~~~l~~~--~~e--~~~a~aa~~~G~~~~vs~~s~~-----------------~---~eei 117 (323)
-.+|.+.++++-|++|||... +... .++ +..-+.=++.|+.+++++.... - +.++
T Consensus 8 P~~ig~~~lkNRiv~apm~~~-~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~k~l 86 (330)
T d1ps9a1 8 PLDLGFTTLKNRVLMGSMHTG-LEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTI 86 (330)
T ss_dssp CEECSSCEESSSEEECCCCCS-CTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHH
T ss_pred CccCCCEEeCCCcEeCCCCCC-cCCCCCCcHHHHHHHHHHHhCCeEEEEEeeeEEcCCccccCCCcccCCcccccccccc
Confidence 367889999999999999632 1111 123 2333444556877777643210 1 2222
Q ss_pred Hh---cCCCceeEEeeecC--------------------------ChHHH-------HHHHHHHHHcCCcEEEEecCCCC
Q 020636 118 AS---TGPGIRFFQLYVYK--------------------------DRNVV-------AQLVRRAERAGFKAIALTVDTPR 161 (323)
Q Consensus 118 ~~---~~~~~~~~QLy~~~--------------------------d~~~~-------~~~~~~a~~~G~~al~itvd~p~ 161 (323)
.+ ..+...++||+... +.+.+ .+..++|+++|++++-|+...
T Consensus 87 ~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~ah-- 164 (330)
T d1ps9a1 87 TEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSE-- 164 (330)
T ss_dssp HHHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECB--
T ss_pred eeeeecCCCeehhhhhhcCCccccCcccCCccccccccCCCChhcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccch--
Confidence 22 13456789985311 11222 334567788999999998642
Q ss_pred CCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcC--CCEEEecc------
Q 020636 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK--LPILVKGV------ 233 (323)
Q Consensus 162 ~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~pv~vK~i------ 233 (323)
|+ +-+.|--| ..+.| .+.-|..+. ....+..|.|+.+|+.++ .||.++..
T Consensus 165 -Gy----Ll~qFlSp-~~N~R----------tDeYGGs~e------nR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~ 222 (330)
T d1ps9a1 165 -GY----LINEFLTL-RTNQR----------SDQWGGDYR------NRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVE 222 (330)
T ss_dssp -TS----HHHHHHCT-TTCCC----------CSTTSSSHH------HHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCST
T ss_pred -HH----HHHHHHHh-hcccc----------cccCCccHh------hhhHHHHHHHHHHHHHcCCCceeEeccccccccc
Confidence 21 11112001 00000 000111111 112356789999999984 66777732
Q ss_pred --CCHHH----HHHHHHcCCCEEEEcCCCCC--CCC-CC----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 020636 234 --LTAED----ARIAVQAGAAGIIVSNHGAR--QLD-YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (323)
Q Consensus 234 --~~~e~----a~~~~~~Gad~i~vs~~gg~--~~~-~~----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~ 300 (323)
.+.++ ++.+.++|+|.+.++..+.. ... .. .........+++.+ ++|||+.|+|.+++++.++|+
T Consensus 223 ~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~ 300 (330)
T d1ps9a1 223 DGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV--SLPLVTTNRINDPQVADDILS 300 (330)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC--SSCEEECSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhC--CceEEEeCCCCCHHHHHHHHH
Confidence 34444 56778899999998753321 111 11 11223445555555 799999999999999999999
Q ss_pred cC-CCEEEEccccccCcchhh
Q 020636 301 LG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 301 lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
.| ||.|++||+|+.+|+|-+
T Consensus 301 ~g~~D~V~~gR~~iadP~~~~ 321 (330)
T d1ps9a1 301 RGDADMVSMARPFLADAELLS 321 (330)
T ss_dssp TTSCSEEEESTHHHHCTTHHH
T ss_pred CCCcchhHhhHHHHhChhHHH
Confidence 99 999999999999998743
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=99.21 E-value=1.5e-10 Score=115.98 Aligned_cols=221 Identities=16% Similarity=0.095 Sum_probs=132.5
Q ss_pred ccccceEECcccccccCCcHHHHHHHHHHHHcCCceeecCCCCCCHHHHHhc-------------------CC---Ccee
Q 020636 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-------------------GP---GIRF 126 (323)
Q Consensus 69 ~~~~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs~~s~~~~eei~~~-------------------~~---~~~~ 126 (323)
.+-.||.++.|+++.+ .++.-.++++++.+.|.....++..- +.+..... .+ ....
T Consensus 435 ~I~k~f~~~aMS~Gsl-S~~a~~ala~aa~~~G~~~ntGEGG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~i 512 (809)
T d1ofda2 435 SIVKRFCTGGMSLGAL-SREAHETLAIAMNRLGAKSNSGEGGE-DVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAI 512 (809)
T ss_dssp HHHTTEECCCBCTTTS-CHHHHHHHHHHHHHHTCBCEECTTCC-CGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSE
T ss_pred hhhhhhcccccccccc-cHHHHHHHHHHHHHhCceecCCCCCC-CceeeeccCccccccCcccccccccccCCCCCcchh
Confidence 4567999999999766 66788899999999999999998752 22221100 00 1234
Q ss_pred EEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCC-Ccccc--ccccccccCCCccccchhhHHH
Q 020636 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP-PFLTL--KNFQGLDLGKMDEANDSGLAAY 203 (323)
Q Consensus 127 ~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (323)
.|+- ....+.+.+.+.. ++.|-|-+.--..+- .|-.+| .|++. ..+...+.+. ..
T Consensus 513 ~q~a-sgrfGv~~~~l~~-----~~~ieIK~~QGAKPG------~GG~Lpg~KVt~~IA~~R~~~~G~----------~l 570 (809)
T d1ofda2 513 KQIA-SGRFGVTPEYLMS-----GKQLEIKMAQGAKPG------EGGQLPGKKVSEYIAMLRRSKPGV----------TL 570 (809)
T ss_dssp EEEC-TTCTTCCHHHHHH-----CSEEEEECCCTTSTT------SCCEECGGGCCHHHHHHHTSCTTC----------CE
T ss_pred Hhhh-hcccCCChhhhcc-----cceEEEEEecccccc------cccccchhhcCHHHHhhcCCCCCC----------CC
Confidence 5542 2333333444443 345555543211100 000112 12211 0011111110 01
Q ss_pred HhhccCCcc-CHH----HHHHHHHhc-CCCEEEeccC--CH-HHHHHHHHcCCCEEEEcCCCCCCC--------CCCcch
Q 020636 204 VAGQIDRSL-SWK----DVKWLQTIT-KLPILVKGVL--TA-EDARIAVQAGAAGIIVSNHGARQL--------DYVPAT 266 (323)
Q Consensus 204 ~~~~~~~~~-~~~----~i~~i~~~~-~~pv~vK~i~--~~-e~a~~~~~~Gad~i~vs~~gg~~~--------~~~~~~ 266 (323)
+++..++++ +.+ .|.++|+.. +.||.||.+. .. ..+..+.++|+|.|.++++.|..- +.+.|.
T Consensus 571 iSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~ 650 (809)
T d1ofda2 571 ISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPW 650 (809)
T ss_dssp ECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccH
Confidence 122223333 333 366777766 5799999763 23 335555689999999999854221 234556
Q ss_pred HHHHHHHHHHh-----cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 267 IMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 267 ~~~l~~i~~~~-----~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
...|.++.+.+ ++++.++++||++|+.|++||++||||+|.+||.++
T Consensus 651 ~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l 702 (809)
T d1ofda2 651 ELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAM 702 (809)
T ss_dssp HHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHH
Confidence 66777776665 458999999999999999999999999999999775
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=98.88 E-value=8.6e-08 Score=88.85 Aligned_cols=102 Identities=12% Similarity=-0.050 Sum_probs=73.6
Q ss_pred cCHHHHHHHHHhcC-CCEEEecc------------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHH
Q 020636 212 LSWKDVKWLQTITK-LPILVKGV------------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEV 273 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK~i------------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i 273 (323)
+..|.++.||+.++ -+|.++.. .+.++ ++.+.+.|+|.+.+|... ....++ ....-..+
T Consensus 212 f~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~---~~~~~~~~~~~~~~~ 288 (363)
T d1vyra_ 212 LVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETD---LAGGKPYSEAFRQKV 288 (363)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCB---TTBCCCCCHHHHHHH
T ss_pred hHHHHHhhhhhhcCCCCcceeecccccccchhhcccchHHHHHHHHHHHhcCCeeeecccCC---ccCCccccHHHHHHH
Confidence 56789999999984 34656632 22344 567778999999998532 111222 33444556
Q ss_pred HHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 274 ~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
++.+ ++||++.| +.|++++.++|+.| ||.|.+||+|+.+|+|=
T Consensus 289 ~~~~--~~~vi~~G-~~t~~~ae~~l~~G~~DlV~~gR~liadP~~~ 332 (363)
T d1vyra_ 289 RERF--HGVIIGAG-AYTAEKAEDLIGKGLIDAVAFGRDYIANPDLV 332 (363)
T ss_dssp HHHC--CSEEEEES-SCCHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred HHhc--CceEEecC-CCCHHHHHHHHHCCCcceehhhHHHHHCccHH
Confidence 6666 67888765 56999999999999 89999999999999884
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.86 E-value=2e-08 Score=93.62 Aligned_cols=105 Identities=10% Similarity=-0.115 Sum_probs=74.0
Q ss_pred ccCHHHHHHHHHhcC-CCEEEecc--------C--C-----HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHH
Q 020636 211 SLSWKDVKWLQTITK-LPILVKGV--------L--T-----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 274 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~-~pv~vK~i--------~--~-----~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~ 274 (323)
.+..|.|+.||+.++ ..+.++.. . . .+.+..+...|+|.+.++........... .......++
T Consensus 214 Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~-~~~~~~~i~ 292 (374)
T d1gwja_ 214 RFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITY-PEGFREQMR 292 (374)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCC-CTTHHHHHH
T ss_pred hhHHHHHHHHHHHcCCcceeeeeeeeccccCCcccchHHHHHHhhccccccCceEEEeccCcccCCCcch-hHHHHHHHH
Confidence 366889999999984 44666632 1 1 12245567889999988753211111111 112334567
Q ss_pred HHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 275 KATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 275 ~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
+.+ ++|||+.|++ ++..+.++|+-| ||.|++||+|+.+|+|=
T Consensus 293 ~~~--~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~iadPd~~ 335 (374)
T d1gwja_ 293 QRF--KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLP 335 (374)
T ss_dssp HHC--CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred HHc--CCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHHCccHH
Confidence 777 8999999999 789999999998 99999999999999884
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=98.82 E-value=8.1e-08 Score=89.08 Aligned_cols=106 Identities=14% Similarity=-0.046 Sum_probs=67.9
Q ss_pred cCHHHHHHHHHhcC-CCEEEecc---------CCHHH------HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHH
Q 020636 212 LSWKDVKWLQTITK-LPILVKGV---------LTAED------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK~i---------~~~e~------a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (323)
+..|.|+.||+.++ .+++++.. .+.++ ++.+...+++.+.++..............+....+++
T Consensus 210 f~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (364)
T d1icpa_ 210 FALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRK 289 (364)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHH
T ss_pred HHHHHhhhhhcccCCcceeEEecccccccCCcCcchHHHHHHHHHHhhccceeeeeeecCcccccccccccHHHHHHHHH
Confidence 56789999999984 45777643 22222 2333455566665543221111001111223445666
Q ss_pred HhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchhh
Q 020636 276 ATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 276 ~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~~ 320 (323)
.+ +.||++.||+ +++++.++|+.| ||.|++||+++.+|+|=+
T Consensus 290 ~~--~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~iadPd~~~ 332 (364)
T d1icpa_ 290 AY--KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLPK 332 (364)
T ss_dssp HC--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHH
T ss_pred hc--CCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHHCccHHH
Confidence 66 7899998886 789999999987 999999999999998844
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=4.2e-08 Score=86.08 Aligned_cols=185 Identities=19% Similarity=0.179 Sum_probs=118.0
Q ss_pred CCCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccC
Q 020636 111 TSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (323)
Q Consensus 111 ~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~ 190 (323)
..++++++...+... |-+....+.+.++.+++.+.|+.+++|. |..-...++.-.+ .++.+..+.+||.|
T Consensus 29 ~~~~~~la~~ID~Tl---L~p~~t~e~i~~lc~~A~~~~~aaVcV~---P~~v~~a~~~L~g----s~v~v~tVigFP~G 98 (251)
T d1o0ya_ 29 SAGIEDVKSAIEHTN---LKPFATPDDIKKLCLEARENRFHGVCVN---PCYVKLAREELEG----TDVKVVTVVGFPLG 98 (251)
T ss_dssp CCCHHHHHHHEEEEE---CCTTCCHHHHHHHHHHHHHHTCSEEEEC---GGGHHHHHHHHTT----SCCEEEEEESTTTC
T ss_pred hhCHHHHHHhccccC---CCCCCCHHHHHHHHHHHhhcCceEEEEC---HHHHHHHHHHhcC----CCceEEeeccCCCC
Confidence 357889887655322 3445668889999999999999999976 4432233332221 23445556778877
Q ss_pred CCcccc-chhhHHHH---------------hhccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHc
Q 020636 191 KMDEAN-DSGLAAYV---------------AGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQA 245 (323)
Q Consensus 191 ~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~ 245 (323)
...... -......+ ...++.+...++|+.+++..+ ...+|.| ++.++ ++.+.++
T Consensus 99 ~~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~e~~~a~~ia~~a 177 (251)
T d1o0ya_ 99 ANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISKLA 177 (251)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhc-ccceeeeecccccCcHHHHHHHHHHHHh
Confidence 533100 00000000 011222223456777877765 3567866 44444 5677899
Q ss_pred CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 246 Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
|+|+|..|..-+ .+..+.+.+..+++.+++++.|-++|||||.+|+.+++.+||+.++..+
T Consensus 178 GadfvKTSTGf~----~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~aGa~riGtSs 238 (251)
T d1o0ya_ 178 GAHFVKTSTGFG----TGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSS 238 (251)
T ss_dssp TCSEEECCCSSS----SCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred CcceeeccCCCC----CCCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHHhhHHhCCCc
Confidence 999999876322 1245666666667777778999999999999999999999999876544
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=98.79 E-value=8.3e-08 Score=82.91 Aligned_cols=167 Identities=20% Similarity=0.192 Sum_probs=107.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc-cchhhHHHHh-----
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA-NDSGLAAYVA----- 205 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 205 (323)
...++.+.++++++.+.|+.+++|. |..-...+.. . .++.+..+.+||.|..... .-....+.+.
T Consensus 16 ~~t~~~i~~lc~~A~~~~~~aVcV~---P~~v~~a~~~---l---~~vkv~tVigFP~G~~~~~~K~~E~~~Ai~~GAdE 86 (225)
T d1mzha_ 16 HLSEKEIEEFVLKSEELGIYAVCVN---PYHVKLASSI---A---KKVKVCCVIGFPLGLNKTSVKVKEAVEAVRDGAQE 86 (225)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEEC---GGGHHHHHHH---C---SSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSE
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEC---HHHHHHHHhh---c---cCCceEEEeccCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 4567888999999999999999985 4332222221 1 2455556678887753210 0000000000
Q ss_pred ----------hccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcch
Q 020636 206 ----------GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPAT 266 (323)
Q Consensus 206 ----------~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~ 266 (323)
..++.+...++++.+++..+.+ ++|.+ ++.++ ++.+.++|+|.|..|..-+ ....+
T Consensus 87 ID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~-~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~----~~gat 161 (225)
T d1mzha_ 87 LDIVWNLSAFKSEKYDFVVEELKEIFRETPSA-VHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFA----PRGTT 161 (225)
T ss_dssp EEEECCHHHHHTTCHHHHHHHHHHHHHTCTTS-EEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCS----SSCCC
T ss_pred EEEeechhhhhcccHHHHHHHHHHHHHhccCc-eeehhhhhccCCHHHHHHHHHHHHHcccceEeecCCCC----CCCCC
Confidence 0111122234566676766543 46755 45554 5677899999999876422 12356
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 267 ~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
++.+..+++.+++++.|-++|||||.+|+.+++.+||+.++..+.+
T Consensus 162 ~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~RiGtSs~~ 207 (225)
T d1mzha_ 162 LEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSGI 207 (225)
T ss_dssp HHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCHH
T ss_pred HHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhheecCcHH
Confidence 6777777777777899999999999999999999999988776654
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=98.74 E-value=9.3e-08 Score=81.85 Aligned_cols=167 Identities=21% Similarity=0.212 Sum_probs=105.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCcccc-chhhHHHH------
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN-DSGLAAYV------ 204 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------ 204 (323)
....+.+.++.+++.+.|+.++++. |..-...++. +. ..++.+..+.+||.|...... -......+
T Consensus 14 ~~T~~~i~~lc~~A~~~~~~aVcV~---P~~v~~a~~~---l~-~s~v~v~~VigFP~G~~~~~~k~~e~~~ai~~GA~E 86 (211)
T d1ub3a_ 14 TATLEEVAKAAEEALEYGFYGLCIP---PSYVAWVRAR---YP-HAPFRLVTVVGFPLGYQEKEVKALEAALACARGADE 86 (211)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEECC---GGGHHHHHHH---CT-TCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSE
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEC---HHHHHHHHHH---cc-CCCCceEEEEecccccCcHHHHHHHHHHHHHcCCCe
Confidence 4467788899999999999998865 3322122222 21 124455566678877532100 00000000
Q ss_pred ---------hhccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcch
Q 020636 205 ---------AGQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPAT 266 (323)
Q Consensus 205 ---------~~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~ 266 (323)
...++.+...++++.+++..+. ..+|.| ++.++ ++.+.++|+|+|..|..-+ ....+
T Consensus 87 iD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~----~~gat 161 (211)
T d1ub3a_ 87 VDMVLHLGRAKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG----PRGAS 161 (211)
T ss_dssp EEEECCHHHHHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS----SCCCC
T ss_pred EEEeeccchhhcCCHHHHHHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHHHHHhccceEEecCCCC----CCCCC
Confidence 0112222234467788887753 467865 55555 4677899999999876322 12346
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 267 ~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.+.+..+++.+++++.|-++|||||.+++.+++.+||+.++..+
T Consensus 162 ~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~aGa~riGtSs 205 (211)
T d1ub3a_ 162 LEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSS 205 (211)
T ss_dssp HHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHHhhhHhccCc
Confidence 66666777777778999999999999999999999999876654
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.71 E-value=1.9e-07 Score=81.60 Aligned_cols=83 Identities=12% Similarity=0.195 Sum_probs=64.2
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
.+.+.++++++.++|++.|-+.|+.- .+-..+.+...++...++.+..+|+.|||.+.+|+.++..+|+|+|.||+.
T Consensus 158 Evh~~~El~~a~~~~a~iIGINnRnL---~t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGea 234 (247)
T d1a53a_ 158 EINDENDLDIALRIGARFIGINSRDL---ETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSS 234 (247)
T ss_dssp EECSHHHHHHHHHTTCSEEEEESBCT---TTCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHH
T ss_pred hcCCHHHHHHHHhCCCCeEeeeccCh---hhhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHH
Confidence 45677777777777777777765433 233344555556666677789999999999999999999999999999999
Q ss_pred cccCcc
Q 020636 312 PCQCPL 317 (323)
Q Consensus 312 ~~~~~~ 317 (323)
|+.+|+
T Consensus 235 Lmk~~d 240 (247)
T d1a53a_ 235 LMRNPE 240 (247)
T ss_dssp HHHCTT
T ss_pred HcCCCc
Confidence 998876
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=98.61 E-value=6.8e-07 Score=78.20 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=102.6
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchHHHHh---hccCCCCccccccc-cccccCCCc--cc--cchhhHHHHhhccCCc
Q 020636 140 QLVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNF-QGLDLGKMD--EA--NDSGLAAYVAGQIDRS 211 (323)
Q Consensus 140 ~~~~~a~~~G~~al~itvd~p~~g~r~~d~~---~~~~~~~~~~~~~~-~~~~~~~~~--~~--~~~~~~~~~~~~~~~~ 211 (323)
++++.-++.|+.+|-|-.|...++-...+++ ....+| .+ .++-..+.+ .. .|+...-.+.... +.
T Consensus 69 ~~A~~y~~~GA~aiSVLTe~~~F~Gs~~dl~~v~~~~~iP------vLrKDFIid~~QI~ea~~~GADaVLLIaall-~~ 141 (254)
T d1vc4a_ 69 EAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLP------LLRKDFVVDPFMLEEARAFGASAALLIVALL-GE 141 (254)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSC------EEEESCCCSHHHHHHHHHTTCSEEEEEHHHH-GG
T ss_pred HHHHHHHhcCCceEEEEcCcccccccHHHHHHHHHHcCCC------cccCCccccHHHHHHHHhccchHHHHHHHHH-HH
Confidence 4566778899999999889887765555544 333333 11 122222211 00 0000000000000 11
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
....+-...+.++.-++| .+.+.+++.++.++|++.|-|.|+-=+.+........-|.++....+.++.+|+.+||.+
T Consensus 142 -~l~~l~~~A~~lgl~~LV-Evh~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~ 219 (254)
T d1vc4a_ 142 -LTGAYLEEARRLGLEALV-EVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSR 219 (254)
T ss_dssp -GHHHHHHHHHHHTCEEEE-EECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCS
T ss_pred -HHHHHHHHHHHhCCceEE-EeccHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEccCCCC
Confidence 122232334445654444 467899999999999999888775433344444444444444444444678999999999
Q ss_pred HHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 292 GTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
..|+. .+..|+|+|.||+.|+.+++-.+.
T Consensus 220 ~~dv~-~l~~g~davLIGesLm~~~d~~~~ 248 (254)
T d1vc4a_ 220 KEELK-ALEGLFDAVLIGTSLMRAPDLEAA 248 (254)
T ss_dssp HHHHH-TTTTTCSEEEECHHHHTSSCHHHH
T ss_pred HHHHH-HHHcCCCEEEEChhhcCCCCHHHH
Confidence 99975 567899999999999998876543
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.58 E-value=1e-07 Score=83.83 Aligned_cols=101 Identities=25% Similarity=0.279 Sum_probs=82.1
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCC------------------------------------
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH------------------------------------ 255 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~------------------------------------ 255 (323)
..+.++.+.+.+..|+.+. |+.+.++++.+.++|++.|+++..
T Consensus 62 ~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~ 141 (251)
T d1ka9f_ 62 LLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVH 141 (251)
T ss_dssp HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhhhCHHHHHHHHHhhcccccccccchhhcccceEEE
Confidence 3567888988889999888 578999999999999999988321
Q ss_pred --CCCC---------------------------CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCC
Q 020636 256 --GARQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 256 --gg~~---------------------------~~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd 304 (323)
|++. .|| ..++++++.++.+.. ++|+|++||+++.+|+.+++..|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~~i~~~~--~~pii~~GGv~~~~dl~~l~~~g~~ 219 (251)
T d1ka9f_ 142 VAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQAGAE 219 (251)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred eccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHHHHHHhhc--ceeEEEecCCCCHHHHHHHHHCCCC
Confidence 1110 022 245688888888877 7999999999999999999999999
Q ss_pred EEEEccccccC
Q 020636 305 GIFVSIMPCQC 315 (323)
Q Consensus 305 ~V~iG~~~~~~ 315 (323)
+|.+|++|...
T Consensus 220 gviig~al~~g 230 (251)
T d1ka9f_ 220 AALAASVFHFG 230 (251)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEhHHHHcC
Confidence 99999988643
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=98.58 E-value=6.2e-08 Score=84.28 Aligned_cols=187 Identities=22% Similarity=0.229 Sum_probs=103.9
Q ss_pred CHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCC
Q 020636 113 SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (323)
Q Consensus 113 ~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~ 192 (323)
+.+|+....+... |-+...++.+.++++++.+.|+.++++. |..-...+.+..+. ++.+..+.+||.|..
T Consensus 16 sp~~la~~ID~Tl---L~~~~T~~~i~~lc~~A~~~~~~avcV~---p~~v~~a~~~l~~s----~v~v~tVigFP~G~~ 85 (234)
T d1n7ka_ 16 SPEDLASRIDSTL---LSPRATEEDVRNLVREASDYGFRCAVLT---PVYTVKISGLAEKL----GVKLCSVIGFPLGQA 85 (234)
T ss_dssp SHHHHHTTEEEEC---CCTTCCHHHHHHHHHHHHHHTCSEEEEC---HHHHHHHHHHHHHH----TCCEEEEESTTTCCS
T ss_pred CHHHHHHHhhhcC---CCCCCCHHHHHHHHHHHHHhCCeEEEEC---cHhHHHHHHHhhcC----CCceEEEEecCCCCC
Confidence 3466665443221 3334567888999999999999999875 33222223332222 344555667887753
Q ss_pred cccc-chhhHHHHh---hccC--------CccCHHHHHHHHHhc-CCCEEEecc-----CCHHH----HHHHHHcCCCEE
Q 020636 193 DEAN-DSGLAAYVA---GQID--------RSLSWKDVKWLQTIT-KLPILVKGV-----LTAED----ARIAVQAGAAGI 250 (323)
Q Consensus 193 ~~~~-~~~~~~~~~---~~~~--------~~~~~~~i~~i~~~~-~~pv~vK~i-----~~~e~----a~~~~~~Gad~i 250 (323)
.... -......+. .+.| .+..|+.+.++.+.. .....+|.+ ++.++ ++.+.++|+|.|
T Consensus 86 ~~~~k~~E~~~Ai~~GAdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFV 165 (234)
T d1n7ka_ 86 PLEVKLVEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIV 165 (234)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEE
T ss_pred cHHHHHHHHHHHHHcCCCeEEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhhe
Confidence 2100 000000000 0011 112345555554433 234567865 45555 456679999999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 251 IVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 251 ~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
..|..-+. ....+.....+.+. ..+.++.|-++|||||.+|+.+++.+||+.++..+..
T Consensus 166 KTSTG~~~-~gat~~~~~~l~~~--~~~~~vgIKasGGIrt~~~a~~~i~aGa~rIGtSs~~ 224 (234)
T d1n7ka_ 166 KTSTGVYT-KGGDPVTVFRLASL--AKPLGMGVKASGGIRSGIDAVLAVGAGADIIGTSSAV 224 (234)
T ss_dssp ESCCSSSC-CCCSHHHHHHHHHH--HGGGTCEEEEESSCCSHHHHHHHHHTTCSEEEETTHH
T ss_pred eecccccC-CCCCHHHHHHHHHH--hcCCCCcEEeeCCcCCHHHHHHHHHccCceeecchHH
Confidence 98753211 11112222222222 2233789999999999999999999999987665543
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=1.3e-07 Score=83.19 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcCC---------------C--------------------
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------G-------------------- 256 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~~---------------g-------------------- 256 (323)
..+.++.+.+.++.|+.+.| +.+.++++.+.++||+.|+++.. |
T Consensus 62 ~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~ 141 (253)
T d1thfd_ 62 MLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVF 141 (253)
T ss_dssp HHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeee
Confidence 46678899998999999984 68999999999999999988320 1
Q ss_pred ---CCC---------------------------CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCC
Q 020636 257 ---ARQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 257 ---g~~---------------------------~~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd 304 (323)
++. .|| ..+.++.+.++.+.. ++||+++||+++.+|+.+++..|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~~i~~~~--~~pvi~~GGv~s~~di~~l~~~g~~ 219 (253)
T d1thfd_ 142 TYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFLAGAD 219 (253)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred eeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCccccccccccccc--cceEEEecCCCCHHHHHHHHHCCCC
Confidence 100 022 245677888776655 7999999999999999999999999
Q ss_pred EEEEccccccC
Q 020636 305 GIFVSIMPCQC 315 (323)
Q Consensus 305 ~V~iG~~~~~~ 315 (323)
+|.+|++|...
T Consensus 220 gvivgsal~~~ 230 (253)
T d1thfd_ 220 AALAASVFHFR 230 (253)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEchHHHcC
Confidence 99999998643
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=98.50 E-value=3.3e-06 Score=78.28 Aligned_cols=105 Identities=10% Similarity=-0.071 Sum_probs=67.7
Q ss_pred cCHHHHHHHHHhcC-CCEEEecc---------C-C-HHH----H------HHHHHcCCCEEEEcCCCCCCC----CCC--
Q 020636 212 LSWKDVKWLQTITK-LPILVKGV---------L-T-AED----A------RIAVQAGAAGIIVSNHGARQL----DYV-- 263 (323)
Q Consensus 212 ~~~~~i~~i~~~~~-~pv~vK~i---------~-~-~e~----a------~~~~~~Gad~i~vs~~gg~~~----~~~-- 263 (323)
+..|.|+.||+.++ -.++++.. . . .+. + ..+...+++.+.++....... .+.
T Consensus 211 f~lEii~aIr~~vg~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 290 (380)
T d1q45a_ 211 FLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQG 290 (380)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC-------------
T ss_pred hHHHHHHHHHHHccccCceEEEeecccccccccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccC
Confidence 56789999999884 33444421 1 1 111 1 112236788888875322111 010
Q ss_pred c--chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-CCEEEEccccccCcchh
Q 020636 264 P--ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 264 ~--~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG-Ad~V~iG~~~~~~~~~~ 319 (323)
+ ........+++.+ ++||++.||+ +++++.++|+.| ||.|++||+|+.+|.+-
T Consensus 291 ~~~~~~~~~~~ik~~~--~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~liaDPdlv 346 (380)
T d1q45a_ 291 SDEEEAKLMKSLRMAY--NGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIANPDLV 346 (380)
T ss_dssp --CHHHHHHHHHHHHS--CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred chhhhHHHHHHHhhcc--CCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHHCccHH
Confidence 1 1223455566666 7999999998 699999999998 99999999999999874
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.50 E-value=4.4e-07 Score=79.80 Aligned_cols=101 Identities=29% Similarity=0.411 Sum_probs=81.4
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcC-------------------------------------
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN------------------------------------- 254 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~------------------------------------- 254 (323)
.++.++.+.+.+..|+.+.| +.+.++++.+.++|++.|++..
T Consensus 64 ~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~ 143 (252)
T d1h5ya_ 64 FIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVY 143 (252)
T ss_dssp HHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEE
T ss_pred HHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEecccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEE
Confidence 45678889888999999884 6899999999999999998821
Q ss_pred -CCCCC---------------------------CCCC--cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCC
Q 020636 255 -HGARQ---------------------------LDYV--PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 255 -~gg~~---------------------------~~~~--~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd 304 (323)
||++. .||. .+.++.+.++.+.. ++||+++|||++.+|+.++..+|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~~~~i~~~~--~~pii~~GGv~~~~di~~l~~~g~~ 221 (252)
T d1h5ya_ 144 VKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAAAGAD 221 (252)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred EeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCcCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCC
Confidence 11110 0222 35678888888776 7999999999999999999999999
Q ss_pred EEEEccccccC
Q 020636 305 GIFVSIMPCQC 315 (323)
Q Consensus 305 ~V~iG~~~~~~ 315 (323)
+|.+|++|...
T Consensus 222 gv~~gs~l~~~ 232 (252)
T d1h5ya_ 222 AVLAASLFHFR 232 (252)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEhhHHHcC
Confidence 99999988543
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.48 E-value=5e-07 Score=78.66 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=79.4
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC---------------------------------CCCC
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN---------------------------------HGAR 258 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~---------------------------------~gg~ 258 (323)
..+.++.+.+.+.+|+.+. |+.+.++++.+.+.|++.|++.. +|..
T Consensus 62 ~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~ 141 (239)
T d1vzwa1 62 NRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWT 141 (239)
T ss_dssp CHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSC
T ss_pred hHHHHHHHHhhcCcceEeecccccchhhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeeccceeeecCccce
Confidence 5678889999999999999 56899999999999999998832 1100
Q ss_pred C--------------------------CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc---CCCEEE
Q 020636 259 Q--------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIF 307 (323)
Q Consensus 259 ~--------------------------~~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l---GAd~V~ 307 (323)
. .|| ..+.++++..+.+.. ++|++++|||++.+|+.+.-.+ |+++|.
T Consensus 142 ~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~--~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvi 219 (239)
T d1vzwa1 142 RDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVPAGVEGAI 219 (239)
T ss_dssp CCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred eeccccchhhhhhhhccccEEEEEeecccceecCCcchhhhhhhhcc--CceEEEECCCCCHHHHHHHHhhhhCCccEee
Confidence 0 022 245678888887776 7999999999999999887655 999999
Q ss_pred Ecccccc
Q 020636 308 VSIMPCQ 314 (323)
Q Consensus 308 iG~~~~~ 314 (323)
+|++|..
T Consensus 220 vg~al~~ 226 (239)
T d1vzwa1 220 VGKALYA 226 (239)
T ss_dssp ECHHHHT
T ss_pred EhHHHHC
Confidence 9999865
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.47 E-value=1.9e-06 Score=76.13 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=99.6
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+.+.++++.+.+.|++.|-+.+ |... | ...||.- ..+..+.+.......
T Consensus 27 ~P~~~~~~~~~~~l~~~GaDiiElGi--PfSD------------P----------~aDGpvI---q~a~~~al~~G~~~~ 79 (267)
T d1qopa_ 27 DPGIEQSLKIIDTLIDAGADALELGV--PFSD------------P----------LADGPTI---QNANLRAFAAGVTPA 79 (267)
T ss_dssp SSCHHHHHHHHHHHHHTTCSSEEEEC--CCSC------------C----------TTCCHHH---HHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCCc------------c----------cccchHH---Hhhhhhcccccchhh
Confidence 34678889999999999999887654 4310 1 0011100 011111222233334
Q ss_pred cCHHHHHHHHHhc-CCCEEEecc-------CCHHHHHHHHHcCCCEEEEcC---------------CCC--------CC-
Q 020636 212 LSWKDVKWLQTIT-KLPILVKGV-------LTAEDARIAVQAGAAGIIVSN---------------HGA--------RQ- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~---------------~gg--------~~- 259 (323)
..++.++.+|+.. ..|+++=+- ...+-++.+.++|+|++++-- ||- +.
T Consensus 80 ~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~ 159 (267)
T d1qopa_ 80 QCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNAD 159 (267)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCC
T ss_pred hhhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEeccccc
Confidence 4567788888875 689876642 123457899999999998821 110 00
Q ss_pred ----------------------CCCC-----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 260 ----------------------LDYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 260 ----------------------~~~~-----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
..|. ...-+.+.++++.. ++||++--||++++|+.+++..|||+|.||+++
T Consensus 160 ~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAi 237 (267)
T d1qopa_ 160 DDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAISGSAI 237 (267)
T ss_dssp HHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhc--cCCceeecccCCHHHHHHHHhcCCCEEEECHHH
Confidence 0111 11235677777665 899999999999999999999999999999988
Q ss_pred cc
Q 020636 313 CQ 314 (323)
Q Consensus 313 ~~ 314 (323)
+.
T Consensus 238 vk 239 (267)
T d1qopa_ 238 VK 239 (267)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=98.44 E-value=4.3e-07 Score=85.05 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=35.8
Q ss_pred CCeEEEecCCCCHHHHHHHHHc-CCCEEEEccccccCcchh
Q 020636 280 RIPVFLDGGVRRGTDVFKALAL-GASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 280 ~~pvia~GGI~~~~di~kal~l-GAd~V~iG~~~~~~~~~~ 319 (323)
++|||+.|||.+..++.+.+.. |||.|.+||+|+.+|+|=
T Consensus 317 ~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~ 357 (399)
T d1oyaa_ 317 KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLV 357 (399)
T ss_dssp CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHH
T ss_pred CCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCccHH
Confidence 6799999999999998888876 599999999999999874
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=2.2e-06 Score=72.71 Aligned_cols=174 Identities=11% Similarity=0.061 Sum_probs=110.1
Q ss_pred eEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh
Q 020636 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (323)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
.+.+....+.+...++++.+.+.|++.+-||+.+|..-.--++++..+. | .+.+ + .+.+.+ ...+.....
T Consensus 11 iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~-~-~~~v----G--aGTV~~--~~~~~~a~~ 80 (202)
T d1wa3a1 11 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKE-K-GAII----G--AGTVTS--VEQCRKAVE 80 (202)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHH-T-TCEE----E--EESCCS--HHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcC-C-CcEE----E--eccccc--HHHHHHHHh
Confidence 3444445778888888888889999999999998864222223332110 1 1110 0 000000 000111110
Q ss_pred ----hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 206 ----GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 206 ----~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
....|.++.+.++..++. ++| ++=|+.|+.++..+.++|+|.+.+.... ......++.+..-++ ++
T Consensus 81 aGa~fivsP~~~~~v~~~~~~~-~i~-~iPGv~TpsEi~~A~~~G~~~lK~fPa~-------~~G~~~lk~l~~p~p-~i 150 (202)
T d1wa3a1 81 SGAEFIVSPHLDEEISQFCKEK-GVF-YMPGVMTPTELVKAMKLGHTILKLFPGE-------VVGPQFVKAMKGPFP-NV 150 (202)
T ss_dssp HTCSEEECSSCCHHHHHHHHHH-TCE-EECEECSHHHHHHHHHTTCCEEEETTHH-------HHHHHHHHHHHTTCT-TC
T ss_pred hcccEEeCCCCcHHHHHHHHhc-CCc-eeCCcCcHHHHHHHHHCCCCEEEecchh-------hcCHHHHHHHhCccc-CC
Confidence 113466777777777664 554 4557899999999999999999985311 001245555554444 79
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 282 PVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 282 pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
|++.+||| +.+++.+.+.+||.+|++|+.+... +|.+|
T Consensus 151 ~~iptGGI-~~~n~~~~l~aga~avg~Gs~l~~~-~~~~i 188 (202)
T d1wa3a1 151 KFVPTGGV-NLDNVCEWFKAGVLAVGVGSALVKG-TPDEV 188 (202)
T ss_dssp EEEEBSSC-CTTTHHHHHHHTCSCEEECHHHHCS-CHHHH
T ss_pred cEEeeCCC-CHHHHHHHHHCCCeEEEEchhhcCC-CHHHH
Confidence 99999999 7899999999999999999988753 44443
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.42 E-value=5.7e-07 Score=81.62 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 020636 264 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFVSIMPCQ 314 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-lGAd~V~iG~~~~~ 314 (323)
...++++.++.+.+ ++|||++||+.+.+|+.+++. .|+++|.+|++|..
T Consensus 250 G~D~el~~~i~~~~--~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~ 299 (323)
T d1jvna1 250 GYDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 299 (323)
T ss_dssp CCCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred ccchhHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHc
Confidence 45788999998887 899999999999999999987 57999999999864
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.39 E-value=6.8e-06 Score=70.65 Aligned_cols=169 Identities=19% Similarity=0.166 Sum_probs=102.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccc-cchhhHHHHh-----
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA-NDSGLAAYVA----- 205 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 205 (323)
..+++.+.++++++.+.|+.+++|. |. +-...+..+ .++.+..+.+||.|..... .-... +.+.
T Consensus 13 ~~t~~~i~~~~~~A~~~~~aavcV~---P~---~v~~a~~~l---~~~~v~tVigFP~G~~~~~~k~~e~-~a~~~GAdE 82 (226)
T d1vcva1 13 YLTVDEAVAGARKAEELGVAAYCVN---PI---YAPVVRPLL---RKVKLCVVADFPFGALPTASRIALV-SRLAEVADE 82 (226)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEC---GG---GHHHHGGGC---SSSEEEEEESTTTCCSCHHHHHHHH-HHHTTTCSE
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEC---HH---HHHHHHHhc---cCCceEEEEecCcccCcHHHHHHHH-HHHHcCCCe
Confidence 4567888999999999999999975 33 223333322 2455556677887753310 00000 0000
Q ss_pred ----------hccCCccCHHHHHHHHHhcCCCEEEecc-----CCHHH----HHHHHHcCCCEEEEcCCCC-C-------
Q 020636 206 ----------GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGA-R------- 258 (323)
Q Consensus 206 ----------~~~~~~~~~~~i~~i~~~~~~pv~vK~i-----~~~e~----a~~~~~~Gad~i~vs~~gg-~------- 258 (323)
..++.+...++++.+++..+ +.++|.| ++.++ ++.+.++|+|.|..|..-+ .
T Consensus 83 ID~Vin~~~~~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf~~~g~~~~~~ 161 (226)
T d1vcva1 83 IDVVAPIGLVKSRRWAEVRRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQG 161 (226)
T ss_dssp EEEECCHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTT
T ss_pred eEEEecHHHHhCCCHHHHHHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCcceeeecccccCCccccccc
Confidence 01111112334667776664 4568865 44444 4566789999999875311 0
Q ss_pred -CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-------CCCEEEEccc
Q 020636 259 -QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-------GASGIFVSIM 311 (323)
Q Consensus 259 -~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~l-------GAd~V~iG~~ 311 (323)
.....+.....+.++.+..+.++-|-++|||||.+++.+++.+ ||..++..+.
T Consensus 162 ~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs~ 222 (226)
T d1vcva1 162 NPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTSTP 222 (226)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESCG
T ss_pred CcccCcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCCh
Confidence 1112233455666666666668999999999999999999987 7777665543
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.38 E-value=4.8e-06 Score=73.25 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=94.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
..|.+.+.++++.+.++|++.|-+.+ |..- ++.++..++ .+..+.+....+.+
T Consensus 27 ~P~~~~~~~~l~~l~~~G~DiiElGi--PfSD----------P~aDGpvIq---------------~a~~rAL~~G~~~~ 79 (261)
T d1rd5a_ 27 DPDLATTAEALRLLDGCGADVIELGV--PCSD----------PYIDGPIIQ---------------ASVARALASGTTMD 79 (261)
T ss_dssp SSCHHHHHHHHHHHHHTTCSSEEEEC--CCSC----------CTTSCHHHH---------------HHHHHHHTTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCCC----------cCcCCccee---------------eeeeeccccCcchh
Confidence 34678889999999999999887654 4310 001111110 01111222222233
Q ss_pred cCHHHHHHHHHhcCCCEEEeccCCHH---HHHHHHHcCCCEEEEcC---------------CCC---------CC-----
Q 020636 212 LSWKDVKWLQTITKLPILVKGVLTAE---DARIAVQAGAAGIIVSN---------------HGA---------RQ----- 259 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~i~~~e---~a~~~~~~Gad~i~vs~---------------~gg---------~~----- 259 (323)
..++.++++|+..+.|+++=.-.++- -.+.+.++|+|++++-. ||= +.
T Consensus 80 ~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~ 159 (261)
T d1rd5a_ 80 AVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMK 159 (261)
T ss_dssp HHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHH
T ss_pred hhhhhhhcccccccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHH
Confidence 44667888888778887754321110 13456778888887721 110 00
Q ss_pred -----------------CCCC-----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 260 -----------------LDYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 260 -----------------~~~~-----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..|. ....+.+..+++.. ++||++--||++++|+.++...|||+|.||++|+.
T Consensus 160 ~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 160 EITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR 234 (261)
T ss_dssp HHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhcc--CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 0011 11235677777765 89999999999999999999999999999999863
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=2.3e-06 Score=74.64 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
+.+.++..++.++|++.|-+-|+- +..-..+++...++...++.+..+++.+||++.+|+.. +..|+|+|.||+.|
T Consensus 164 vh~~~El~~a~~~~a~iIGINnRn---L~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~-l~~g~davLiGesl 239 (254)
T d1piia2 164 VSNEEEQERAIALGAKVVGINNRD---LRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRE-LSHFANGFLIGSAL 239 (254)
T ss_dssp ECSHHHHHHHHHTTCSEEEEESEE---TTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHH-HTTTCSEEEECHHH
T ss_pred hccHHHHHHHHhhcccccCccccc---hhhhhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHH-HHcCCCEEEEChHH
Confidence 455666666666666666555432 22223334444455556676888999999999999865 57899999999999
Q ss_pred ccCcchhh
Q 020636 313 CQCPLTEK 320 (323)
Q Consensus 313 ~~~~~~~~ 320 (323)
+..++-.+
T Consensus 240 m~~~dp~~ 247 (254)
T d1piia2 240 MAHDDLHA 247 (254)
T ss_dssp HTCSCHHH
T ss_pred hCCCCHHH
Confidence 99887554
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.35 E-value=1e-06 Score=75.62 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCC-CCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
++--+.+.+. +.-|..=...++.-++++.+.||..|.--+.. |+ ..+..+...|..|.+.. ++|||+|+||.++
T Consensus 115 l~Aae~Lv~e-GF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGS--g~Gl~n~~~l~~i~~~~--~vPvIvDAGIG~p 189 (251)
T d1xm3a_ 115 LKASEQLLEE-GFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGS--GQGILNPLNLSFIIEQA--KVPVIVDAGIGSP 189 (251)
T ss_dssp HHHHHHHHHT-TCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCSH
T ss_pred HHHHHHHHhC-CcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhc--CCCcCChHHHHHHHhcC--CccEEEecCCCCH
Confidence 3333444333 34454445578899999999999999763321 11 12355677788888776 8999999999999
Q ss_pred HHHHHHHHcCCCEEEEccccccCcchh
Q 020636 293 TDVFKALALGASGIFVSIMPCQCPLTE 319 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~~~~~ 319 (323)
.|+.+|+++|||+|++.|+.....+=-
T Consensus 190 SdAa~AMElG~daVLvNTAIA~a~dPv 216 (251)
T d1xm3a_ 190 KDAAYAMELGADGVLLNTAVSGADDPV 216 (251)
T ss_dssp HHHHHHHHTTCSEEEESHHHHTSSSHH
T ss_pred HHHHHHHHccCCEEEechhhhcCCCHH
Confidence 999999999999999999887655433
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=98.31 E-value=1.6e-06 Score=75.55 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHH-cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 233 VLTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 233 i~~~e~a~~~~~-~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
+.+.++..++.+ .|++.|-|-|+--..+.. ++....++...++.+..+|+.+||++.+|+.. +..|+|+|.||+.
T Consensus 157 vh~~~El~~al~~~~a~iiGINnRdL~t~~v---d~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~-l~~G~davLIG~s 232 (251)
T d1i4na_ 157 VHSREDLEKVFSVIRPKIIGINTRDLDTFEI---KKNVLWELLPLVPDDTVVVAESGIKDPRELKD-LRGKVNAVLVGTS 232 (251)
T ss_dssp ECSHHHHHHHHTTCCCSEEEEECBCTTTCCB---CTTHHHHHGGGSCTTSEEEEESCCCCGGGHHH-HTTTCSEEEECHH
T ss_pred cCCHHHHHHHhcccccceeeeeecchhccch---hhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHH-HHhCCCEEEEChH
Confidence 566666666654 356666665543222222 23333444555666789999999999999854 6789999999999
Q ss_pred cccCcchhh
Q 020636 312 PCQCPLTEK 320 (323)
Q Consensus 312 ~~~~~~~~~ 320 (323)
|+..++-.+
T Consensus 233 Lm~~~~p~~ 241 (251)
T d1i4na_ 233 IMKAENPRR 241 (251)
T ss_dssp HHHCSSHHH
T ss_pred HhCCCCHHH
Confidence 998776544
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.31 E-value=4.4e-06 Score=72.89 Aligned_cols=104 Identities=21% Similarity=0.207 Sum_probs=73.8
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcC---------------CCC--------C
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSN---------------HGA--------R 258 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~---------------~gg--------~ 258 (323)
+.+..++.++++|+..+.|+++=+= .-.+-++.+.++|+|++++-- ||- +
T Consensus 64 ~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPt 143 (248)
T d1geqa_ 64 KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPN 143 (248)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTT
T ss_pred cHHHHHHHHHHHhhcCCCcEEEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEeccc
Confidence 3344577889999888889776532 123457888999999998821 110 0
Q ss_pred C-----------------------CCCC----cc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 259 Q-----------------------LDYV----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 259 ~-----------------------~~~~----~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
. ..|. +. ..+.+.++++.. +.||++--||++++|+.+++..|||+|.+|+
T Consensus 144 t~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGS 221 (248)
T d1geqa_ 144 TPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVGS 221 (248)
T ss_dssp CCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred chhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhc--ccceeeecccCCHHHHHHHHhcCCCEEEECH
Confidence 0 0011 11 235677777765 7999998899999999999999999999999
Q ss_pred cccc
Q 020636 311 MPCQ 314 (323)
Q Consensus 311 ~~~~ 314 (323)
+++.
T Consensus 222 aiv~ 225 (248)
T d1geqa_ 222 ALVK 225 (248)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.24 E-value=2.5e-06 Score=73.69 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=65.5
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCC-CCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
...++..++++.+.||..+.--+.. |+ ..+..+...+..+.+.. ++|||+++||.++.|+.+|+++|||+|.+.|
T Consensus 134 ~~~D~v~ak~le~~Gc~~vMplgsPIGs--g~Gi~n~~~l~~i~~~~--~vpvivdAGIg~psdaa~AMElG~dgVLvns 209 (243)
T d1wv2a_ 134 TSDDPIIARQLAEIGCIAVMPLAGLIGS--GLGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMELGCEAVLMNT 209 (243)
T ss_dssp ECSCHHHHHHHHHSCCSEEEECSSSTTC--CCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred cCCCHHHHhHHHHcCceeeeeccccccc--ccccccHHHHHhccccC--CcceEeecccCCHHHHHHHHHccCCEEEech
Confidence 3467888999999999998764321 11 11344555666777665 8999999999999999999999999999999
Q ss_pred ccccCcchhh
Q 020636 311 MPCQCPLTEK 320 (323)
Q Consensus 311 ~~~~~~~~~~ 320 (323)
+.....+=.+
T Consensus 210 aIa~A~dP~~ 219 (243)
T d1wv2a_ 210 AIAHAKDPVM 219 (243)
T ss_dssp HHHTSSSHHH
T ss_pred HhhcCCCHHH
Confidence 8877655433
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.23 E-value=7e-06 Score=70.03 Aligned_cols=109 Identities=23% Similarity=0.258 Sum_probs=80.2
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcC---------CCCC------------CC----------
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN---------HGAR------------QL---------- 260 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~---------~gg~------------~~---------- 260 (323)
+.+.++++.+.+.+|+..|- +...-+|+.+...|.|++.=|- |-.+ .+
T Consensus 46 dp~~i~ei~~~vsipvmak~righ~~eaqiLe~~~vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~Eg 125 (254)
T d1znna1 46 DPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEG 125 (254)
T ss_dssp CHHHHHHHHHHCSSCEEEEEETTCHHHHHHHHHHTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcccccccccCCCchHHHHhHHhhCCCcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHH
Confidence 45678889999999999994 6788899999999999997542 2110 00
Q ss_pred -----------------------------------CC---------CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHH
Q 020636 261 -----------------------------------DY---------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296 (323)
Q Consensus 261 -----------------------------------~~---------~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ 296 (323)
+. -..+.+++.++.+.-+-.+|+|++|||.|+.|+.
T Consensus 126 AamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa 205 (254)
T d1znna1 126 ASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAA 205 (254)
T ss_dssp CSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHH
T ss_pred HHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHH
Confidence 00 0112344555554322368999999999999999
Q ss_pred HHHHcCCCEEEEccccccCcchhhh
Q 020636 297 KALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 297 kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
.++++|||+|.+|+..+...+=.++
T Consensus 206 ~~MelG~dgV~v~s~I~~s~dP~~~ 230 (254)
T d1znna1 206 LMMHLGADGVFVGSGIFKSENPEKY 230 (254)
T ss_dssp HHHHTTCSEEEECGGGGGSSCHHHH
T ss_pred HHHHcCCCEEEEcchhhcCCCHHHH
Confidence 9999999999999999887665443
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=98.17 E-value=1.3e-05 Score=68.16 Aligned_cols=170 Identities=14% Similarity=0.160 Sum_probs=109.2
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh----h
Q 020636 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA----G 206 (323)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 206 (323)
...+.+...++++.+.+.|++.+-||+..|..-.--+.++..+ |. +.+ + .|.+.+ ...+.+... .
T Consensus 21 r~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~--p~-~~v----G--aGTV~~--~~~~~~a~~aGa~F 89 (212)
T d1vhca_ 21 ALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANR--PD-FLI----A--AGTVLT--AEQVVLAKSSGADF 89 (212)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC--TT-CEE----E--EESCCS--HHHHHHHHHHTCSE
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcC--CC-ceE----e--eeeccc--HHHHHHHHhhCCcE
Confidence 3466777777888888889999999998876433233444444 21 110 0 011000 001111110 1
Q ss_pred ccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 020636 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (323)
Q Consensus 207 ~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~ 286 (323)
...|.++.+.++..++. ++|+ +=|++|+.|+..+.++|++.|.+.-.+. ......++.+..-++ +++++..
T Consensus 90 ivSP~~~~~v~~~a~~~-~i~~-iPGv~TpsEi~~A~~~G~~~vK~FPA~~------~gG~~~lkal~~p~p-~~~~~pt 160 (212)
T d1vhca_ 90 VVTPGLNPKIVKLCQDL-NFPI-TPGVNNPMAIEIALEMGISAVKFFPAEA------SGGVKMIKALLGPYA-QLQIMPT 160 (212)
T ss_dssp EECSSCCHHHHHHHHHT-TCCE-ECEECSHHHHHHHHHTTCCEEEETTTTT------TTHHHHHHHHHTTTT-TCEEEEB
T ss_pred EECCCCCHHHHHHHHhc-CCCc-cCCcCCHHHHHHHHHCCCCEEEEccccc------cchHHHHHHHhcccc-CCeEEec
Confidence 12466777777777664 6665 4578999999999999999999964221 113445555555454 7999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEcccccc-----Ccchhhh
Q 020636 287 GGVRRGTDVFKALALGASGIFVSIMPCQ-----CPLTEKI 321 (323)
Q Consensus 287 GGI~~~~di~kal~lGAd~V~iG~~~~~-----~~~~~~~ 321 (323)
|||. .+++.+.|++|+.++++|+.++. ..+|++|
T Consensus 161 GGV~-~~N~~~yl~~g~v~~~~Gs~l~~~~~i~~~d~~~i 199 (212)
T d1vhca_ 161 GGIG-LHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEI 199 (212)
T ss_dssp SSCC-TTTHHHHHTSTTBCCEEECGGGCHHHHHTTCHHHH
T ss_pred CCCC-HHHHHHHHhCCCEEEEEChhhCCHHHHhcCCHHHH
Confidence 9996 58899999999999999998764 4455554
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=3.8e-05 Score=65.27 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=117.6
Q ss_pred CCHHHHHhcCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCC
Q 020636 112 SSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (323)
Q Consensus 112 ~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~ 191 (323)
.+.+++....| . +=+....|.+...++++.+.+.|++.+-||.++|..-..-+.++..| |. +.+ + .|.
T Consensus 6 ~~~~~~l~~~~--i-ipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~--p~-~~v----G--aGT 73 (213)
T d1wbha1 6 TSAESILTTGP--V-VPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEV--PE-AIV----G--AGT 73 (213)
T ss_dssp SCHHHHHHSCS--E-EEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHC--TT-SEE----E--EES
T ss_pred cCHHHHHHhCC--E-EEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CC-Cee----e--ccc
Confidence 45677766654 2 22333467888888889999999999999999886433444555555 21 111 1 011
Q ss_pred CccccchhhHHHHh----hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchH
Q 020636 192 MDEANDSGLAAYVA----GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI 267 (323)
Q Consensus 192 ~~~~~~~~~~~~~~----~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~ 267 (323)
..+ ...+..... ....|.++.+.++..++. ++|+ +=|+.|+.|+..+.++|++.+.+.-.. .....
T Consensus 74 V~~--~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~-~i~~-iPGv~TpsEi~~A~~~G~~~vKlFPA~------~~Gg~ 143 (213)
T d1wbha1 74 VLN--PQQLAEVTEAGAQFAISPGLTEPLLKAATEG-TIPL-IPGISTVSELMLGMDYGLKEFKFFPAE------ANGGV 143 (213)
T ss_dssp CCS--HHHHHHHHHHTCSCEEESSCCHHHHHHHHHS-SSCE-EEEESSHHHHHHHHHTTCCEEEETTTT------TTTHH
T ss_pred ccc--HHHHHHHHHCCCcEEECCCCCHHHHHHHHhc-CCCc-cCCcCCHHHHHHHHHCCCCEEEeccch------hcChH
Confidence 100 001111111 112366777778777664 6665 457899999999999999999995321 11234
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 268 ~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
..++.+..-++ +++++.+|||. .+++.+.+.+|+.++++|+.++..
T Consensus 144 ~~lkal~~p~p-~~~~~ptGGV~-~~n~~~yl~~g~v~~~~Gs~l~~~ 189 (213)
T d1wbha1 144 KALQAIAGPFS-QVRFCPTGGIS-PANYRDYLALKSVLCIGGSWLVPA 189 (213)
T ss_dssp HHHHHHHTTCT-TCEEEEBSSCC-TTTHHHHHTSTTBSCEEEGGGSCH
T ss_pred HHHHHhcCccc-CCceeeeCCCC-HHHHHHHHhCCCEEEEEChhhCCh
Confidence 55666554444 79999999997 579999999999999999987643
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=98.14 E-value=6.2e-06 Score=69.91 Aligned_cols=90 Identities=23% Similarity=0.234 Sum_probs=71.7
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEEcCCCCC--CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCE
Q 020636 228 ILVKGVLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 305 (323)
Q Consensus 228 v~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~ 305 (323)
++.--+.+.++++.+.+.|+|++.++--..+ ..+..+..++.+.++.+.. ++||++-||| +.+++.+++.+||++
T Consensus 101 iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~--~~Pv~AiGGI-~~~ni~~~~~~Ga~g 177 (206)
T d1xi3a_ 101 IIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGI-NKDNAREVLKTGVDG 177 (206)
T ss_dssp EEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSC-CTTTHHHHHTTTCSE
T ss_pred ccccccCCHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhc--CCCEEEECCC-CHHHHHHHHHhCCCE
Confidence 4444567899999999999999999753322 2233455788899988877 8999999999 778899999999999
Q ss_pred EEEccccccCcchhh
Q 020636 306 IFVSIMPCQCPLTEK 320 (323)
Q Consensus 306 V~iG~~~~~~~~~~~ 320 (323)
|.+.+.++..++.++
T Consensus 178 vAvis~I~~~~dp~~ 192 (206)
T d1xi3a_ 178 IAVISAVMGAEDVRK 192 (206)
T ss_dssp EEESHHHHTSSSHHH
T ss_pred EEEhHHHHCCCCHHH
Confidence 999999998776544
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=98.13 E-value=4.8e-06 Score=72.35 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCCEEEec-cCCHHHHHHHHHcCCCEEEEcC--------------------------------CCCCC---
Q 020636 216 DVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--------------------------------HGARQ--- 259 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~Gad~i~vs~--------------------------------~gg~~--- 259 (323)
.++.+++ ...|+.+.| +.+.++++.+.+.|+|.|++.. ||++.
T Consensus 65 ~~~~~~~-~~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~~~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~~ 143 (241)
T d1qo2a_ 65 VLEKLSE-FAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEE 143 (241)
T ss_dssp HHHHGGG-GGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCSC
T ss_pred heehhcc-cccchhhhhhhhhhhhhhhccccccceEecCcccccCchhhhhhcccccceeeecccccccccccCccccee
Confidence 4455555 457998885 7899999999999999998722 11110
Q ss_pred C------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC------CCEEE
Q 020636 260 L------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG------ASGIF 307 (323)
Q Consensus 260 ~------------------------~~--~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lG------Ad~V~ 307 (323)
. || ..+.++++..+.+.. ++|||++||+++.+|+.++..+| +++|.
T Consensus 144 ~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~~~i~~~~--~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvi 221 (241)
T d1qo2a_ 144 IDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred eehhHHHHHhhccccceEEEeehhhhhhccccchhhhhhhhccC--CceEEEECCCCCHHHHHHHHHccccccCCEeeEE
Confidence 0 11 245788888888776 89999999999999999998765 89999
Q ss_pred Ecccccc
Q 020636 308 VSIMPCQ 314 (323)
Q Consensus 308 iG~~~~~ 314 (323)
+|++|..
T Consensus 222 vG~al~~ 228 (241)
T d1qo2a_ 222 VGRAFLE 228 (241)
T ss_dssp ECHHHHT
T ss_pred EHHHHHC
Confidence 9999854
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.83 E-value=9.3e-05 Score=63.17 Aligned_cols=90 Identities=21% Similarity=0.235 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCC-----CCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEE
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNH-----GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~-----gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~ 307 (323)
+....+++.+.+.+.+.|..... |.+.....+..+..+.+..+....++||+..|||.++.|+..++.+|+|+|.
T Consensus 123 v~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvL 202 (224)
T d1hg3a_ 123 SNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVL 202 (224)
T ss_dssp ESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred hhhHHHHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEE
Confidence 45677888888999888766432 2111111122222222222334457999999999999999999999999999
Q ss_pred EccccccCcchhhhc
Q 020636 308 VSIMPCQCPLTEKIN 322 (323)
Q Consensus 308 iG~~~~~~~~~~~~~ 322 (323)
||++++..+++.++.
T Consensus 203 VGsAsl~a~d~~~~~ 217 (224)
T d1hg3a_ 203 LASGVTKAKDPEKAI 217 (224)
T ss_dssp ESHHHHTCSSHHHHH
T ss_pred EcceeecCcCHHHHH
Confidence 999999999998875
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.80 E-value=3.5e-05 Score=66.11 Aligned_cols=100 Identities=18% Similarity=0.114 Sum_probs=71.4
Q ss_pred HHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCC--CCCC-cchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 219 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 219 ~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~--~~~~-~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
.+|+..+..++..-+.+.++++.+.+.|+|+|.++.-..+. .+.. +...+.+..+.+.. .++||++-||| +.+++
T Consensus 108 ~~r~~~~~~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~-~~~Pv~AiGGI-~~~ni 185 (226)
T d2tpsa_ 108 EVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG-ISIPIVGIGGI-TIDNA 185 (226)
T ss_dssp HHHHHHTTSEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT-CCCCEEEESSC-CTTTS
T ss_pred hhhhcccceeeeeeccchHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHhc-CCCCEEEecCC-CHHHH
Confidence 34454443344444689999999999999999987533221 2222 23355666655421 27999999999 88999
Q ss_pred HHHHHcCCCEEEEccccccCcchhh
Q 020636 296 FKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 296 ~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
.+++.+||++|.+.+.++..++-++
T Consensus 186 ~~l~~~Ga~giAvis~I~~a~dp~~ 210 (226)
T d2tpsa_ 186 APVIQAGADGVSMISAISQAEDPES 210 (226)
T ss_dssp HHHHHTTCSEEEESHHHHTSSCHHH
T ss_pred HHHHHhCCCEEEEhHHhhcCCCHHH
Confidence 9999999999999999988776544
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.74 E-value=0.00012 Score=64.37 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCccCHHHHHHHHHhcCCCEEEeccC-------CHHHHHHHHHcCCCEEEEcCCCC-----------------------C
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGVL-------TAEDARIAVQAGAAGIIVSNHGA-----------------------R 258 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i~-------~~e~a~~~~~~Gad~i~vs~~gg-----------------------~ 258 (323)
+....++.++++|+..+.|+++=+-. -..-++.+.++|+|++++-.-.. +
T Consensus 75 ~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPt 154 (271)
T d1ujpa_ 75 SVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPT 154 (271)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTT
T ss_pred chhhHHHHHHHHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCC
Confidence 34445778899998888998765421 12347889999999998721100 0
Q ss_pred C--------------------C---CCC-----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 259 Q--------------------L---DYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 259 ~--------------------~---~~~-----~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
. . .|. ....+.+..+++.. ++||.+-=||++++|+.++ .|||+|.||+
T Consensus 155 T~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGS 230 (271)
T d1ujpa_ 155 STDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART--ALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp CCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC--CSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred cchHHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhccc--cCCeEEeCCCCCHHHHHHh--CCCCEEEEcH
Confidence 0 0 011 11234566666554 8999887799999998754 5999999999
Q ss_pred cccc
Q 020636 311 MPCQ 314 (323)
Q Consensus 311 ~~~~ 314 (323)
+|+.
T Consensus 231 AiV~ 234 (271)
T d1ujpa_ 231 ALVR 234 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.74 E-value=0.00038 Score=59.04 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=90.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEec-CCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCC
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itv-d~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (323)
..|...+.+.++++++.|++.+=+.+ |. .| .| +-
T Consensus 10 ~~d~~~l~~~i~~~~~~g~d~iHiDimDg------------~F-vp--------------------------------n~ 44 (217)
T d2flia1 10 AADYANFASELARIEETDAEYVHIDIMDG------------QF-VP--------------------------------NI 44 (217)
T ss_dssp GSCGGGHHHHHHHHHHTTCCEEEEEEEBS------------SS-SS--------------------------------CB
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEEcccC------------cC-CC--------------------------------cc
Confidence 45776777889999999998764432 21 11 01 11
Q ss_pred ccCHHHHHHHHHhcCCCEEEec-cCCHH-HHHHHHHcCCCEEEEcCC---------------C---------CCC-----
Q 020636 211 SLSWKDVKWLQTITKLPILVKG-VLTAE-DARIAVQAGAAGIIVSNH---------------G---------ARQ----- 259 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~~pv~vK~-i~~~e-~a~~~~~~Gad~i~vs~~---------------g---------g~~----- 259 (323)
.+..+.++++++.++.|+-+.. +..++ -+..+.++|+|.|.++-. | .+.
T Consensus 45 s~g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~ 124 (217)
T d2flia1 45 SFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALE 124 (217)
T ss_dssp CBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGG
T ss_pred ccCHHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHH
Confidence 1334567777776677766663 23333 366666777777776321 0 000
Q ss_pred -----CC-----------C----CcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 260 -----LD-----------Y----VPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 260 -----~~-----------~----~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.| + .+..++-+.++++.. ..+++|.+||||+ .+.+.++..+|||.+.+|+.++..+
T Consensus 125 ~~l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif~~~ 203 (217)
T d2flia1 125 PLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKAS 203 (217)
T ss_dssp GGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSS
T ss_pred hHHhhcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHhCCC
Confidence 00 1 234556666665544 2268999999996 4578888899999999999999887
Q ss_pred chhh
Q 020636 317 LTEK 320 (323)
Q Consensus 317 ~~~~ 320 (323)
+.++
T Consensus 204 d~~~ 207 (217)
T d2flia1 204 DLVS 207 (217)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=97.62 E-value=0.00018 Score=60.98 Aligned_cols=165 Identities=14% Similarity=0.142 Sum_probs=106.3
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHh----
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA---- 205 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 205 (323)
....+.+...++++.+.+.|++.+-||...|..-..-+.++..| |. +.+ + .|.+.+ ...+.....
T Consensus 23 l~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~--p~-~~v----G--aGTV~~--~~~~~~a~~aGa~ 91 (216)
T d1mxsa_ 23 ITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQR--PE-LCV----G--AGTVLD--RSMFAAVEAAGAQ 91 (216)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHC--TT-SEE----E--EECCCS--HHHHHHHHHHTCS
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhC--CC-cce----e--eeeeec--HHHHHHHHhCCCC
Confidence 33567777888888888999999999998876433334455544 21 211 0 011100 011111111
Q ss_pred hccCCccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 206 ~~~~~~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
....|.++.+.+++.++ .++|+ +=|+.|+.|+..+.++|++.+.+.-.+- ......++.+..-++ +++++.
T Consensus 92 FivsP~~~~~v~~~a~~-~~i~~-iPGv~TpsEi~~A~~~G~~~vKlFPA~~------~~g~~~ikal~~p~p-~~~fip 162 (216)
T d1mxsa_ 92 FVVTPGITEDILEAGVD-SEIPL-LPGISTPSEIMMGYALGYRRFKLFPAEI------SGGVAAIKAFGGPFG-DIRFCP 162 (216)
T ss_dssp SEECSSCCHHHHHHHHH-CSSCE-ECEECSHHHHHHHHTTTCCEEEETTHHH------HTHHHHHHHHHTTTT-TCEEEE
T ss_pred EEECCCCcHHHHHHHHh-cCCCc-cCCcCCHHHHHHHHHCCCCEEEeccccc------cccHHHHHHHhcccc-cCceec
Confidence 12246677788887665 46654 4578999999999999999999853110 012345555554444 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 286 DGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 286 ~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.|||.. +++.+.|++|+-.++.|+.++..
T Consensus 163 tGGV~~-~n~~~yl~~~~v~avggs~l~~~ 191 (216)
T d1mxsa_ 163 TGGVNP-ANVRNYMALPNVMCVGTTWMLDS 191 (216)
T ss_dssp BSSCCT-TTHHHHHHSTTBCCEEECTTSCH
T ss_pred cCCCCH-HHHHHHHhcCCeEEEEccccCCH
Confidence 999974 79999999998888888877653
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00025 Score=58.82 Aligned_cols=87 Identities=13% Similarity=0.024 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~ 312 (323)
..+.+.+..+.+.+++.+++.........+.......+..+.+..+..+++..+||++ .+++.+++.+|||.+.+||++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~~~~i~~~gGi~-~~~~~~~~~~Gad~iVVGr~I 192 (213)
T d1q6oa_ 114 YWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSI 192 (213)
T ss_dssp CCCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHH
T ss_pred CCCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhccCceEecCCCcC-cCCHHHHHHcCCCEEEEChhh
Confidence 3678889999999999887743110011111222334444544444478999999885 789999999999999999999
Q ss_pred ccCcchhh
Q 020636 313 CQCPLTEK 320 (323)
Q Consensus 313 ~~~~~~~~ 320 (323)
...++-.+
T Consensus 193 ~~a~dp~~ 200 (213)
T d1q6oa_ 193 RDAASPVE 200 (213)
T ss_dssp HTSSCHHH
T ss_pred cCCCCHHH
Confidence 98776554
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=0.00015 Score=62.90 Aligned_cols=92 Identities=25% Similarity=0.286 Sum_probs=59.9
Q ss_pred HHHHHHHHHhc-CCCEEEecc-----C-CHHH---H-HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh--cCC
Q 020636 214 WKDVKWLQTIT-KLPILVKGV-----L-TAED---A-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT--QGR 280 (323)
Q Consensus 214 ~~~i~~i~~~~-~~pv~vK~i-----~-~~e~---a-~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~--~~~ 280 (323)
.++++.+++.. ..++.+|.| + +.+. + +.+.++|+|+|..|..-+. ....+.....+.++.... +.+
T Consensus 119 ~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFvKTSTG~~~-~gat~~~v~~m~~~i~~~~~~~~ 197 (250)
T d1p1xa_ 119 FDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVA-VNATPESARIMMEVIRDMGVEKT 197 (250)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCSS-CCCCHHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHHHHHHcCcCeEEecCCcCC-CCCCHHHHHHHHHHhhhhccCcc
Confidence 45677776654 355778866 2 3332 2 4558999999998753221 111233444444433322 347
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEE
Q 020636 281 IPVFLDGGVRRGTDVFKALALGASGI 306 (323)
Q Consensus 281 ~pvia~GGI~~~~di~kal~lGAd~V 306 (323)
+.|-++|||||.+|+.+++.+||+.+
T Consensus 198 vgIKasGGIrt~~~a~~~i~~ga~~i 223 (250)
T d1p1xa_ 198 VGFKPAGGVRTAEDAQKYLAIADELF 223 (250)
T ss_dssp CEEECBSSCCSHHHHHHHHHHHHHHH
T ss_pred eeeEecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998854
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.54 E-value=9.3e-05 Score=64.40 Aligned_cols=80 Identities=26% Similarity=0.286 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|+|.+.+-.-.+. ..+....++.+.++...+ .+|+.+.||||+-+|+.+++.+||+-|.+|+..+.+
T Consensus 35 ~~~a~~~~~~gadei~ivDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~ 111 (252)
T d1h5ya_ 35 VEMAVRYEEEGADEIAILDITAA-PEGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 111 (252)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCC-TTTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHC
T ss_pred HHHHHHHHHCCCCEEEEEecccc-ccccccHHHHHHHHHhhc--CCcceeecccchhhhhhhHhhcCCcEEEecccccCC
Confidence 46688888999999976432221 223345678888888877 899999999999999999999999999999988877
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|.+
T Consensus 112 ~~~ 114 (252)
T d1h5ya_ 112 PQL 114 (252)
T ss_dssp THH
T ss_pred cch
Confidence 654
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=97.52 E-value=0.0005 Score=59.71 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=50.3
Q ss_pred CEEEecc------CCHHH---HH-HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHH-------hcCCCeEEEecCC
Q 020636 227 PILVKGV------LTAED---AR-IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-------TQGRIPVFLDGGV 289 (323)
Q Consensus 227 pv~vK~i------~~~e~---a~-~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~-------~~~~~pvia~GGI 289 (323)
+.++|.| .+.+. +. .+.++|+|.|..|..-+. ....+.....+.++.+. .++++.|-++|||
T Consensus 135 ~~~lKVIlEt~~L~~~e~i~~~~~~~~~aGadFVKTSTG~~~-~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGI 213 (256)
T d2a4aa1 135 NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQ-INATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGI 213 (256)
T ss_dssp TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCSS-CCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSC
T ss_pred CCeeEeeehhhhcCcHHHHHHHHHHHHhcccHHHHhccCCCC-CCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCC
Confidence 4568866 23333 32 346789999998753211 11224444444443321 1458999999999
Q ss_pred CCHHHHHHHHHcCCCE
Q 020636 290 RRGTDVFKALALGASG 305 (323)
Q Consensus 290 ~~~~di~kal~lGAd~ 305 (323)
||.+++.+++.+|++.
T Consensus 214 rt~~~a~~~i~~g~~~ 229 (256)
T d2a4aa1 214 SDLNTASHYILLARRF 229 (256)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998884
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=97.51 E-value=0.00043 Score=59.00 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=61.6
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCCcchHH----HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCE
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIM----ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 305 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~--gg~~~~~~~~~~~----~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~ 305 (323)
-+.+.++++.+.+.+.+.|..-.. .|+.....+...+ .+..+.+ ...++||+..|||.+..|+..++..|+|+
T Consensus 120 cvge~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~-~~~~i~vlygGgV~~~n~~~~~~~~g~dG 198 (226)
T d1w0ma_ 120 CAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSR-HFPEVSVITGAGIESGDDVAAALRLGTRG 198 (226)
T ss_dssp EESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHH-HCTTSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred ecCchHHhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhc-cCCCceEEEecCcCChHHHHHHhcCCCCE
Confidence 357788899999999998877442 1221111111122 2222222 23479999999999999999999999999
Q ss_pred EEEccccccCcchh
Q 020636 306 IFVSIMPCQCPLTE 319 (323)
Q Consensus 306 V~iG~~~~~~~~~~ 319 (323)
|.||++++..++..
T Consensus 199 vLVGsA~l~a~d~~ 212 (226)
T d1w0ma_ 199 VLLASAAVKAKDPY 212 (226)
T ss_dssp EEECHHHHTCSSHH
T ss_pred EEechheecCCCHH
Confidence 99999999877743
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.51 E-value=8e-05 Score=64.81 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+-|+...+.|+|.+.+-.--+ ...+.....+.+.++.+.+ .+|+...||||+-+|+.+.+.+||+-|.+|+.++..
T Consensus 33 ~~~a~~~~~~g~dei~ivDld~-~~~~~~~~~~~i~~i~~~~--~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n 109 (253)
T d1thfd_ 33 VELGKFYSEIGIDELVFLDITA-SVEKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELILRGADKVSINTAAVEN 109 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSC-SSSHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEeecc-cccCcccHHHHHHHHHhcc--CccceeecccccchhhhhHHhcCCCEEEEChHHhhC
Confidence 3567888899999998743211 1222345667788887766 899999999999999999999999999999999887
Q ss_pred cch
Q 020636 316 PLT 318 (323)
Q Consensus 316 ~~~ 318 (323)
|.+
T Consensus 110 ~~~ 112 (253)
T d1thfd_ 110 PSL 112 (253)
T ss_dssp THH
T ss_pred hHH
Confidence 765
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.43 E-value=0.00012 Score=63.63 Aligned_cols=79 Identities=27% Similarity=0.288 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.|+...+.|+|.+.+..-.+. ........+.+.++.+.+ .+|+...||||+.+++.+.+.+||+.|.+|+.++.+|
T Consensus 34 ~~a~~~~~~g~dei~iiDl~~~-~~~~~~~~~~i~~i~~~~--~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n~ 110 (251)
T d1ka9f_ 34 EAARAYDEAGADELVFLDISAT-HEERAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRP 110 (251)
T ss_dssp HHHHHHHHHTCSCEEEEECCSS-TTCHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCT
T ss_pred HHHHHHHHcCCCEEEEEecccc-cccchhHHHHHHHHHhcc--CcchheeccccCHHHHHHHHHcCCCEEEECchhhhCH
Confidence 5578888999999987532221 122344667788887766 7999999999999999999999999999999988877
Q ss_pred ch
Q 020636 317 LT 318 (323)
Q Consensus 317 ~~ 318 (323)
..
T Consensus 111 ~~ 112 (251)
T d1ka9f_ 111 EL 112 (251)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.33 E-value=0.00072 Score=54.89 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
+.++.+++..+...+.-.+.+.++++.+.++|+|.|.+.|. +.+.+.+..+.+..++.+-++||| +.+.
T Consensus 68 ~~~~~~~~~~~~~~IeVEv~~~~~~~~a~~~g~diImLDN~----------~pe~~~~av~~i~~~~~lEaSGgI-~~~n 136 (167)
T d1qapa1 68 QAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDNF----------NTDQMREAVKRVNGQARLEVSGNV-TAET 136 (167)
T ss_dssp HHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEESSC----------CHHHHHHHHHTTCTTCCEEECCCS-CHHH
T ss_pred hhhHHHhhcCCCceEEEecCcHHHHHHHHhcCCcEEEecCC----------CHHHHHHHHHhcCCceEEEEeCCC-CHHH
Confidence 44666666554333444678999999999999999998773 234555666666667899999998 5688
Q ss_pred HHHHHHcCCCEEEEcccccc
Q 020636 295 VFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~ 314 (323)
+.+....|+|.+.+|.....
T Consensus 137 i~~ya~~GVD~IS~galt~~ 156 (167)
T d1qapa1 137 LREFAETGVDFISVGALTKH 156 (167)
T ss_dssp HHHHHHTTCSEEECSHHHHE
T ss_pred HHHHHHcCCCEEECCcccCC
Confidence 88888899999999987544
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.32 E-value=0.00073 Score=55.03 Aligned_cols=91 Identities=10% Similarity=0.026 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHH-HHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~-~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+++..+...+.-.+.+.++++.+.++|+|.|.+.|.. +..+. .+..+ +.....+.+-++||| +.+.
T Consensus 69 ~i~~~k~~~~~~~I~VEv~s~~q~~~a~~~~~diImLDN~s-------p~~~k~~v~~~-~~~~~~i~lEaSGgI-~~~n 139 (169)
T d1qpoa1 69 ALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFA-------VWQTQTAVQRR-DSRAPTVMLESSGGL-SLQT 139 (169)
T ss_dssp HHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETCC-------HHHHHHHHHHH-HHHCTTCEEEEESSC-CTTT
T ss_pred hhhhhhhhcCCCceEEEeccHHHhhhhhhcCCcEEEecCcC-------hHhHHHHHHHh-hccCCeeEEEEeCCC-CHHH
Confidence 46777776654445556799999999999999999998742 23332 23222 223346889999999 7788
Q ss_pred HHHHHHcCCCEEEEccccccC
Q 020636 295 VFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~~~~ 315 (323)
+.+....|+|.+.+|......
T Consensus 140 i~~ya~~GvD~IS~galt~sa 160 (169)
T d1qpoa1 140 AATYAETGVDYLAVGALTHSV 160 (169)
T ss_dssp HHHHHHTTCSEEECGGGTSSB
T ss_pred HHHHHHcCCCEEECCccccCC
Confidence 999999999999999876543
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.26 E-value=0.0036 Score=52.86 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 264 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 264 ~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+..++-+.++++.. .+++|.+||||..- -+.+...+|||.+.+|+.+++.++..+
T Consensus 153 ~~~l~kI~~l~~~~-~~~~I~VDGGIn~~-~i~~l~~aGad~~V~GS~if~~~d~~~ 207 (220)
T d1h1ya_ 153 PEMMEKVRALRKKY-PSLDIEVDGGLGPS-TIDVAASAGANCIVAGSSIFGAAEPGE 207 (220)
T ss_dssp GGGHHHHHHHHHHC-TTSEEEEESSCSTT-THHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred hhhhHHHHHHHhcC-CCceEEEEecCCHH-HHHHHHHCCCCEEEECHHHHCCCCHHH
Confidence 45677777776654 37999999999875 677788899999999999999887654
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=97.17 E-value=0.0077 Score=51.14 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=71.0
Q ss_pred CHHHHHHHHHhcCCCEEEec-cCCH-HHHHHHHHcCCCEEEEcCCC-C-------------------------CC-----
Q 020636 213 SWKDVKWLQTITKLPILVKG-VLTA-EDARIAVQAGAAGIIVSNHG-A-------------------------RQ----- 259 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~-i~~~-e~a~~~~~~Gad~i~vs~~g-g-------------------------~~----- 259 (323)
..+.++++++.++.|+-+.. +..+ .-...+.++|+|.|+++-.. . +.
T Consensus 56 ~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~ 135 (230)
T d1rpxa_ 56 GPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIE 135 (230)
T ss_dssp CHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGT
T ss_pred ChHHHhhhhhccCceeeeeeeecchhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHH
Confidence 34567777777777776664 3444 33566777888888774321 0 00
Q ss_pred -----CC-----------C----CcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 260 -----LD-----------Y----VPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 260 -----~~-----------~----~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.| + .+..++-+.++++.. ..++.|.+||||..- -+.++..+|||.+++|+.++..+
T Consensus 136 ~~l~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~-~i~~l~~~Gad~~V~GS~if~~~ 214 (230)
T d1rpxa_ 136 YVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPK-NAYKVIEAGANALVAGSAVFGAP 214 (230)
T ss_dssp TTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTT-THHHHHHHTCCEEEESHHHHTSS
T ss_pred HHHhhCCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCHH-HHHHHHHcCCCEEEEChHHHCCC
Confidence 00 1 133556565554433 236889999999864 67778899999999999999988
Q ss_pred chhhh
Q 020636 317 LTEKI 321 (323)
Q Consensus 317 ~~~~~ 321 (323)
++++.
T Consensus 215 d~~~~ 219 (230)
T d1rpxa_ 215 DYAEA 219 (230)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 77653
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=97.11 E-value=0.0056 Score=51.67 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 264 PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 264 ~~~~~~l~~i~~~~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+..++-+.++++.. ..++.|.+||||..- -+.++..+|||.+.+|+.++..+++++.
T Consensus 152 ~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~-~i~~l~~~Gad~~V~GS~if~~~d~~~~ 211 (221)
T d1tqja_ 152 PEVLPKIRALRQMCDERGLDPWIEVDGGLKPN-NTWQVLEAGANAIVAGSAVFNAPNYAEA 211 (221)
T ss_dssp GGGHHHHHHHHHHHHHHTCCCEEEEESSCCTT-TTHHHHHHTCCEEEESHHHHTSSCHHHH
T ss_pred hhhHHHHHHHHhhhhccccceEEEEECCcCHH-HHHHHHHcCCCEEEEChHHhCCCCHHHH
Confidence 34455565555443 236889999999853 5677788999999999999998887653
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.09 E-value=0.00032 Score=60.27 Aligned_cols=80 Identities=24% Similarity=0.214 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|+|.+.+-.-.+.. +.....+.+..+.+.+ .+|+.+.|||++-+|+.+.+..||+.|.+|+.++.+
T Consensus 34 ~~~a~~~~~~ga~~l~i~DLd~~~--~~~~~~~~i~~i~~~~--~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~ 109 (239)
T d1vzwa1 34 LEAALAWQRSGAEWLHLVDLDAAF--GTGDNRALIAEVAQAM--DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET 109 (239)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHH--TSCCCHHHHHHHHHHC--SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEeecccc--cccchHHHHHHHHhhc--CcceEeecccccchhhhhhhccccccchhhHHhhhc
Confidence 456788889999999874311110 1234567888888877 799999999999999999999999999999988777
Q ss_pred cchh
Q 020636 316 PLTE 319 (323)
Q Consensus 316 ~~~~ 319 (323)
|..-
T Consensus 110 ~~~~ 113 (239)
T d1vzwa1 110 PEWV 113 (239)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6543
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.0091 Score=50.24 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=68.2
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~ 292 (323)
.++.+.+. ++++-+-.+.+.+.+..|.++|+++|.. +-||--+.+......+.++.+.+ +.+..|++ +.+|+.
T Consensus 95 ai~~L~~~-Gi~~n~Tavfs~~Qa~~Aa~aga~yisp--y~gR~~d~g~d~~~~i~~~~~~~~~~~~~tkil~-AS~r~~ 170 (218)
T d1vpxa_ 95 AVKTLSAE-GIKTNVTLVFSPAQAILAAKAGATYVSP--FVGRMDDLSNDGMRMLGEIVEIYNNYGFETEIIA-ASIRHP 170 (218)
T ss_dssp HHHHHHHT-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHTCSCEEEE-BSCCSH
T ss_pred HHHHHHHc-CCceeeEEecCHHHHHHHHhcCCCEEEe--eecchhhhcccchhhHHHHHHHHhhhcccceeee-eccCCH
Confidence 45555443 7899999999999999999999998865 33433333444556666655543 33566777 679999
Q ss_pred HHHHHHHHcCCCEEEEcccc
Q 020636 293 TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~ 312 (323)
.++.+++..|||.+-+.-.+
T Consensus 171 ~~v~~a~~~G~d~iTip~~v 190 (218)
T d1vpxa_ 171 MHVVEAALMGVDIVTMPFAV 190 (218)
T ss_dssp HHHHHHHHHTCSEEEECHHH
T ss_pred HHHHHHHHcCCCEEEcCHHH
Confidence 99999999999999887443
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=96.98 E-value=0.00019 Score=64.53 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCC--CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH-----------HHHHHHcC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-----------VFKALALG 302 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d-----------i~kal~lG 302 (323)
.+.|+...+.|||.|.+-.-.+.. .....+.++.+.++.+.+ .+||.+-||||+-+| +.+.+.+|
T Consensus 51 ~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~--~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~G 128 (323)
T d1jvna1 51 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG 128 (323)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc--ceeEEEecCcccHHHhhhccchhhHHHHHHHHcC
Confidence 466888899999999873211110 011134577888887766 899999999999766 57889999
Q ss_pred CCEEEEccccccCcc
Q 020636 303 ASGIFVSIMPCQCPL 317 (323)
Q Consensus 303 Ad~V~iG~~~~~~~~ 317 (323)
||-|.|||.++..|.
T Consensus 129 adKVvI~T~ai~~p~ 143 (323)
T d1jvna1 129 ADKVSIGTDAVYAAE 143 (323)
T ss_dssp CSEEEECHHHHHHHH
T ss_pred CCeEEechHHhhChH
Confidence 999999999876554
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.93 E-value=0.0014 Score=53.38 Aligned_cols=93 Identities=25% Similarity=0.213 Sum_probs=65.1
Q ss_pred HHHHHHHHhcC--CCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 215 ~~i~~i~~~~~--~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
+.++.+++..+ .++.| .+.+.++++.+.++|+|.|.+.|.. |..+..+.+..+....++.+-++|||. .
T Consensus 66 ~~~~~~~~~~~~~~~I~V-Ev~~~~e~~~a~~~g~d~i~LDn~~-------pe~~k~~~~~lk~~~~~i~lEaSGGI~-~ 136 (170)
T d1o4ua1 66 RAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNLS-------PEEVKDISRRIKDINPNVIVEVSGGIT-E 136 (170)
T ss_dssp HHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESCC-------HHHHHHHHHHHHHHCTTSEEEEEECCC-T
T ss_pred HHHHHHHhhCCCCceEEE-EeCcHHHHHHHHhcCccEEEEcCcC-------hhhHhHHHHHHHhhCCcEEEEEECCCC-H
Confidence 34677776553 33443 5789999999999999999887732 333333333333344578999999995 4
Q ss_pred HHHHHHHHcCCCEEEEccccccCc
Q 020636 293 TDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
+.+.+....|+|.+.+|......|
T Consensus 137 ~ni~~~a~~GVD~Is~g~lt~~a~ 160 (170)
T d1o4ua1 137 ENVSLYDFETVDVISSSRLTLQEV 160 (170)
T ss_dssp TTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred HHHHHHHHcCCCEEEcCccccCCC
Confidence 667777779999999998766444
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=96.89 E-value=0.0033 Score=53.38 Aligned_cols=95 Identities=20% Similarity=0.352 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
|+..+.+..+.+.+-||..+.-+-|-|+..+|-.|+--..-||- +. |+ |.+ ..-.+
T Consensus 110 D~~etl~Aae~Lv~eGF~VlpY~~~D~v~ak~Le~~Gc~avMPl--------gs---PI--GSg-----------~Gl~n 165 (251)
T d1xm3a_ 110 DPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPG--------AS---PI--GSG-----------QGILN 165 (251)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEEC--------SS---ST--TCC-----------CCCSC
T ss_pred CHHHHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHcCChhHHHh--------hh---hh--hcC-----------CCcCC
Confidence 44444555555556677766666666665555444421111110 00 11 111 12246
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEE
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~v 252 (323)
...|+.|++..++||+|- |+.++.+|..+.+.|+|+|-+
T Consensus 166 ~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLv 205 (251)
T d1xm3a_ 166 PLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLL 205 (251)
T ss_dssp HHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEe
Confidence 778899999999999988 889999999999999999987
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.012 Score=49.52 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~ 292 (323)
.++.+.+. ++++-+-.+.+...+..+.++|+++|.. +-||-.+.+....+.+.++.+.+ +.+..|++ +.+|+.
T Consensus 95 ai~~L~~~-Gi~vn~Tavfs~~Qa~~Aa~aga~yvsp--y~gR~~d~g~dg~~~i~~~~~~~~~~~~~tkIl~-AS~R~~ 170 (220)
T d1l6wa_ 95 AIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAP--YVNRIDAQGGSGIQTVTDLHQLLKMHAPQAKVLA-ASFKTP 170 (220)
T ss_dssp HHHHHHHH-TCCEEEEEECSHHHHHHHHHHTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHHCTTCEEEE-BCCSSH
T ss_pred hhhhhhhc-ccchhhhhcccHHHHHHhhhcCCcEEee--eeeehhhcccCChHHHHHHHHHHHhcCCCceEee-hhcCCH
Confidence 44555443 7899999999999999999999999866 33443344455666666665543 33555555 779999
Q ss_pred HHHHHHHHcCCCEEEEcccc
Q 020636 293 TDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~ 312 (323)
.++.+++.+|||.+-+.-.+
T Consensus 171 ~~v~~~~~~G~d~iTip~~v 190 (220)
T d1l6wa_ 171 RQALDCLLAGCESITLPLDV 190 (220)
T ss_dssp HHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHHcCCCEEEcCHHH
Confidence 99999999999999988533
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=96.75 E-value=0.017 Score=48.27 Aligned_cols=92 Identities=22% Similarity=0.167 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRG 292 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~~pvia~GGI~~~ 292 (323)
.++.+++ -++++-+-.+.+...+..|.++|+++|.. +-||-.|.+....+.+.++.+.+ ..+..|++ +.+|+.
T Consensus 102 a~~~L~~-~Gi~vn~T~vfs~~Qa~~Aa~aga~yisp--yvgR~~d~g~d~~~~~~~~~~~~~~~~~~tkil~-AS~R~~ 177 (211)
T d1wx0a1 102 ACKRLSA-EGIKVNMTLIFSANQALLAARAGASYVSP--FLGRVDDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHP 177 (211)
T ss_dssp HHHHHHH-TTCCEEEEEECSHHHHHHHHHTTCSEEEE--BHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSH
T ss_pred HHHHHhh-cCCceeEEEecCHHHHHHHHHcCCCEEEE--eeecchhccccchhHHHHHHHHHHhccccceeEe-eecCCH
Confidence 3445544 37899999999999999999999999876 33443344455666666666554 23566776 669999
Q ss_pred HHHHHHHHcCCCEEEEccc
Q 020636 293 TDVFKALALGASGIFVSIM 311 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~ 311 (323)
.++.+++.+|||.+-+.-.
T Consensus 178 ~~~~~~~~~G~d~vTi~~~ 196 (211)
T d1wx0a1 178 RHVTEAALLGADIATMPHA 196 (211)
T ss_dssp HHHHHHHHTTCSEEEECHH
T ss_pred HHHHHHHHcCCCEEEeCHH
Confidence 9999999999999988743
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.69 E-value=0.0042 Score=53.40 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.++++|+.++.|+.+. |+.++|+++.+.+.|||+++|.
T Consensus 180 ~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG 220 (248)
T d1geqa_ 180 YDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEEC
Confidence 457999999999999999 7899999999999999999993
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=96.51 E-value=0.025 Score=48.39 Aligned_cols=90 Identities=30% Similarity=0.388 Sum_probs=59.2
Q ss_pred HhcCCCEEEecc---------CCHHH----HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 222 TITKLPILVKGV---------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 222 ~~~~~pv~vK~i---------~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
+.+++|+++=.. .+++. ++.+.+.|+|.|.+-- +.+.+...++.+.. ..+||+..||
T Consensus 133 ~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~~---------p~~~~~~~~~v~~a-~~~pv~~~gG 202 (251)
T d1ojxa_ 133 VKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIKY---------TGDPKTFSWAVKVA-GKVPVLMSGG 202 (251)
T ss_dssp HHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEECC---------CSSHHHHHHHHHHT-TTSCEEEECC
T ss_pred HHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEecC---------CCcHHHHHHHHHhc-CCCceEEeCC
Confidence 346899876522 23332 6788899999999832 22334444444332 2689888888
Q ss_pred CC--CHHHHHH----HHHcCCCEEEEccccccCcchhhh
Q 020636 289 VR--RGTDVFK----ALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 289 I~--~~~di~k----al~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
-. +.+|+++ ++..||.++.+||....+++-.++
T Consensus 203 ~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~~p~~~ 241 (251)
T d1ojxa_ 203 PKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKF 241 (251)
T ss_dssp SCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcCcHHHH
Confidence 65 5666664 456799999999988876654443
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=96.50 E-value=0.0061 Score=52.94 Aligned_cols=41 Identities=32% Similarity=0.398 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.++++|+.+++|+++. ||.++|++..+.+.|+|+++|.
T Consensus 193 ~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG 234 (267)
T d1qopa_ 193 LHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (267)
T ss_dssp CHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEEC
Confidence 4567999999999999999 8899999999999999999994
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.007 Score=50.77 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=61.7
Q ss_pred cCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
...+.|+.+++++ ++-+-+..+.+.++++.+.++|++.++--+ .+.+++....+ . .+|++- |+.
T Consensus 52 ~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~----------~~~~v~~~a~~-~--~i~~iP--Gv~ 116 (213)
T d1wbha1 52 CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG----------LTEPLLKAATE-G--TIPLIP--GIS 116 (213)
T ss_dssp THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS----------CCHHHHHHHHH-S--SSCEEE--EES
T ss_pred hHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCC----------CCHHHHHHHHh-c--CCCccC--CcC
Confidence 3467799999887 455566678999999999999999997522 13344444433 2 566664 799
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 020636 291 RGTDVFKALALGASGIFV 308 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~i 308 (323)
|+.++..|+.+||+.|=+
T Consensus 117 TpsEi~~A~~~G~~~vKl 134 (213)
T d1wbha1 117 TVSELMLGMDYGLKEFKF 134 (213)
T ss_dssp SHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHCCCCEEEe
Confidence 999999999999999866
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.32 E-value=0.0063 Score=51.02 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=61.1
Q ss_pred cCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
...+.|+.+++.. ++-+-+..+.+.++++.+.++||+.++--+ ...+++..+.+ . ++|.+ =|+.
T Consensus 51 ~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~----------~~~~v~~~a~~-~--~i~~i--PGv~ 115 (212)
T d1vhca_ 51 AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG----------LNPKIVKLCQD-L--NFPIT--PGVN 115 (212)
T ss_dssp THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS----------CCHHHHHHHHH-T--TCCEE--CEEC
T ss_pred hHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECCC----------CCHHHHHHHHh-c--CCCcc--CCcC
Confidence 3467789998887 455566678999999999999999986411 12344444433 2 56655 5899
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 020636 291 RGTDVFKALALGASGIFV 308 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~i 308 (323)
|+.++..|+.+||+.|=+
T Consensus 116 TpsEi~~A~~~G~~~vK~ 133 (212)
T d1vhca_ 116 NPMAIEIALEMGISAVKF 133 (212)
T ss_dssp SHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999999866
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=96.27 E-value=0.024 Score=48.31 Aligned_cols=125 Identities=14% Similarity=0.214 Sum_probs=81.9
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccC
Q 020636 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (323)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (323)
|...+.+.+.+-++.++++|++++++.+=.+ |
T Consensus 66 Ys~~E~~~M~~di~~~k~~G~dGvV~G~L~~------------------------------------------------d 97 (247)
T d1twda_ 66 YSDGEFAAILEDVRTVRELGFPGLVTGVLDV------------------------------------------------D 97 (247)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCT------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeEEEEEECC------------------------------------------------C
Confidence 5445566777778888999999998653111 2
Q ss_pred CccCHHHHHHHHHhc-CCCEEEec----cCCH-HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 210 RSLSWKDVKWLQTIT-KLPILVKG----VLTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 210 ~~~~~~~i~~i~~~~-~~pv~vK~----i~~~-e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
..++.+.++.+.+.. +.|+.+.- +.++ +..+.+.+.|++.|-.|+...+ ....++.|.++.+...+.+ |
T Consensus 98 g~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~~----a~~G~~~L~~L~~~a~~~i-I 172 (247)
T d1twda_ 98 GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSD----ALQGLSKIMELIAHRDAPI-I 172 (247)
T ss_dssp SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSS----TTTTHHHHHHHHTSSSCCE-E
T ss_pred CCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcCCCeEeccCCCCc----hhHHHHHHHHHHHhcCCcE-E
Confidence 335666777776665 57777772 2344 4467888999999988764332 2344667777665443334 8
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~i 308 (323)
++-|||+.. .+.+.+..|++.+=.
T Consensus 173 m~GgGI~~~-Ni~~l~~~g~~e~H~ 196 (247)
T d1twda_ 173 MAGAGVRAE-NLHHFLDAGVLEVHS 196 (247)
T ss_dssp EEESSCCTT-THHHHHHHTCSEEEE
T ss_pred EecCCCCHH-HHHHHHHcCCCEEEE
Confidence 888888654 455556679887754
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.16 E-value=0.0091 Score=50.83 Aligned_cols=40 Identities=33% Similarity=0.518 Sum_probs=35.3
Q ss_pred CHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~v 252 (323)
+...++.+++..++|+++- |+.++.||..+.+.|+|+|-+
T Consensus 167 n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVLv 207 (243)
T d1wv2a_ 167 NPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLM 207 (243)
T ss_dssp CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHhccccCCcceEeecccCCHHHHHHHHHccCCEEEe
Confidence 4556777888889999988 889999999999999999977
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=96.10 E-value=0.0019 Score=55.31 Aligned_cols=81 Identities=20% Similarity=0.138 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.|+|.+.+-.-.+. ..+.+.....+..+.+ . .+|+-..|||++.+|+.+.+..||+.|.+++.+...
T Consensus 33 ~~~a~~~~~~g~~~l~ivDLda~-~~~~~~~~~~~~~~~~-~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~ 108 (241)
T d1qo2a_ 33 VELVEKLIEEGFTLIHVVDLSNA-IENSGENLPVLEKLSE-F--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED 108 (241)
T ss_dssp HHHHHHHHHTTCCCEEEEEHHHH-HHCCCTTHHHHHHGGG-G--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred HHHHHHHHHCCCCEEEEEecccc-cccCCcchhheehhcc-c--ccchhhhhhhhhhhhhhhccccccceEecCcccccC
Confidence 46688888999999977321000 0112233444444433 3 479999999999999999999999999999999888
Q ss_pred cchhh
Q 020636 316 PLTEK 320 (323)
Q Consensus 316 ~~~~~ 320 (323)
|...+
T Consensus 109 ~~~~~ 113 (241)
T d1qo2a_ 109 PSFLK 113 (241)
T ss_dssp TTHHH
T ss_pred chhhh
Confidence 87654
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=96.10 E-value=0.0068 Score=50.95 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=61.2
Q ss_pred CHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
.++.|+.+++++ ++.+-+..+.+.++++.+.++|++.++--+ .+.+++....+ . ++|.+ =|+.|
T Consensus 55 a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~----------~~~~v~~~a~~-~--~i~~i--PGv~T 119 (216)
T d1mxsa_ 55 GLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG----------ITEDILEAGVD-S--EIPLL--PGIST 119 (216)
T ss_dssp HHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS----------CCHHHHHHHHH-C--SSCEE--CEECS
T ss_pred HHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCC----------CcHHHHHHHHh-c--CCCcc--CCcCC
Confidence 467789999887 455666678999999999999999986421 23344444333 2 56665 47999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020636 292 GTDVFKALALGASGIFV 308 (323)
Q Consensus 292 ~~di~kal~lGAd~V~i 308 (323)
+.++.+|+.+||+.|=+
T Consensus 120 psEi~~A~~~G~~~vKl 136 (216)
T d1mxsa_ 120 PSEIMMGYALGYRRFKL 136 (216)
T ss_dssp HHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 99999999999999866
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=96.08 E-value=0.0079 Score=55.02 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=54.5
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+.+-+..+.++|+|.|++....|+. ....+.+..+++..+ ++|||+ |+|-|.+.+...+..|||+|-+|-
T Consensus 152 ~~~ra~~L~~aG~D~ivID~AhG~s----~~~~~~i~~ik~~~~-~v~vIa-GNV~T~e~a~~L~~~GaD~VkVGi 221 (388)
T d1eepa_ 152 TIERVEELVKAHVDILVIDSAHGHS----TRIIELIKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVGI 221 (388)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCSS----HHHHHHHHHHHHHCT-TCEEEE-EEECSHHHHHHHHTTTCSEEEECS
T ss_pred HHHHHHHHHhhccceeeeeccccch----HHHHHHHHHHHHHCC-CCceee-ccccCHHHHHHHHhcCCCeeeecc
Confidence 4577889999999999996533321 234567777776653 688776 999999999999999999998874
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.91 E-value=0.016 Score=52.37 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=53.8
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
..+.+..+.++|+|.|++....|+ .....+.+.++++..+ +++|| .|.|-|.+.+.+.+..|||+|-+|-
T Consensus 108 ~~er~~~l~~agvd~ivID~A~G~----s~~~~~~i~~ik~~~~-~~~iI-aGNV~T~e~a~~L~~aGaD~VkVGi 177 (365)
T d1zfja1 108 TFERAEALFEAGADAIVIDTAHGH----SAGVLRKIAEIRAHFP-NRTLI-AGNIATAEGARALYDAGVDVVKVGI 177 (365)
T ss_dssp HHHHHHHHHHHTCSEEEECCSCTT----CHHHHHHHHHHHHHCS-SSCEE-EEEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHHcCCCEEEEECCccc----ccchhHHHHHHHhhCC-Cccee-ecccccHHHHHHHHhcCCceEEeee
Confidence 346688889999999998653332 1234567777777664 67777 5999999999999999999998873
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.027 Score=48.90 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=58.9
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH----cCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----LGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~----lGAd~V~iG~~~~ 313 (323)
++.+.+.|++++.+.++.|....-... -.+.+..+.+.+.+++||++..|-.+..+.++... +|||++++..++.
T Consensus 28 i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~ 107 (292)
T d2a6na1 28 IDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107 (292)
T ss_dssp HHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCcceeccCCCC
Confidence 456678999999998776642111111 13455566677777899999999999888887664 7999999999887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 108 ~~~~~~~ 114 (292)
T d2a6na1 108 NRPSQEG 114 (292)
T ss_dssp SCCCHHH
T ss_pred CCCCHHH
Confidence 7665443
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=95.65 E-value=0.016 Score=48.86 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccCc
Q 020636 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 267 ~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
.+.+..+++.+ .++||++-+||++++++.++. .|||+|.+|+++...+
T Consensus 169 ~~~~~~v~~~~-~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~~i 216 (229)
T d1viza_ 169 IEAVKKTKAVL-ETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDF 216 (229)
T ss_dssp HHHHHHHHHTC-SSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCH
T ss_pred chhHHHHHhhc-cCcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHhhH
Confidence 45555555544 369999999999999997755 7999999999986543
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.64 E-value=0.03 Score=46.93 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=66.9
Q ss_pred HHHHHHhcCCC--EEEeccCCHHHHHHHHH-cCCCEEEEcC-CCCC-CCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 020636 217 VKWLQTITKLP--ILVKGVLTAEDARIAVQ-AGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (323)
Q Consensus 217 i~~i~~~~~~p--v~vK~i~~~e~a~~~~~-~Gad~i~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~ 291 (323)
++++++. +.. +.+..-.+.+.....++ ..+|.|.+-. +.|. .-...+..++-+.++++..+ ++.|.+||||..
T Consensus 104 i~~i~~~-g~~~Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~-~~~I~VDGGIn~ 181 (221)
T d1tqxa_ 104 AKEIRDN-NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK-NLNIQVDGGLNI 181 (221)
T ss_dssp HHHHHTT-TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-TCEEEEESSCCH
T ss_pred HHHHHhc-CCeEEEeeccccccccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhcC-CcceEEEcccCH
Confidence 4555554 322 33333355666776665 4689886532 2221 11223456777777776543 689999999965
Q ss_pred HHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 292 GTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 292 ~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
+-+.+...+|||.+..|+.++..++.++
T Consensus 182 -~~i~~l~~aGad~iV~GS~if~~~d~~~ 209 (221)
T d1tqxa_ 182 -ETTEISASHGANIIVAGTSIFNAEDPKY 209 (221)
T ss_dssp -HHHHHHHHHTCCEEEESHHHHTCSSHHH
T ss_pred -HhHHHHHHcCCCEEEEChHHHCCCCHHH
Confidence 5688888999999999999998877654
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=95.63 E-value=0.025 Score=49.03 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=56.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-... -.+++..+.+...+++|||+.-|-.+..++++. -.+|||++++..++.
T Consensus 28 i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP~y 107 (295)
T d1o5ka_ 28 VRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY 107 (295)
T ss_dssp HHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 456778999999997766532111111 123455555666678999998888888776643 347999999998887
Q ss_pred cCcchhhh
Q 020636 314 QCPLTEKI 321 (323)
Q Consensus 314 ~~~~~~~~ 321 (323)
..+..+.+
T Consensus 108 ~~~s~~~i 115 (295)
T d1o5ka_ 108 NKPTQEGL 115 (295)
T ss_dssp SCCCHHHH
T ss_pred CCCCHHHH
Confidence 77655443
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.58 E-value=0.13 Score=42.31 Aligned_cols=92 Identities=16% Similarity=0.079 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCCEEEec-----------cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeE
Q 020636 215 KDVKWLQTITKLPILVKG-----------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~-----------i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pv 283 (323)
+.++++|+..+.|+.... ....++...+..+|+|.+.+...-... .......+.+..+.... .. +
T Consensus 56 ~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~ 131 (230)
T d1yxya1 56 RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDR-HDGLDIASFIRQVKEKY--PN-Q 131 (230)
T ss_dssp HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCC-TTCCCHHHHHHHHHHHC--TT-C
T ss_pred hhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEecccccc-cchhhHHHHHHHHHhcC--CC-c
Confidence 455566666666654331 134678889999999999886533221 11233456666665544 22 4
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 284 FLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 284 ia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+..+++.|.+++.+++++|||.+.++.
T Consensus 132 ~v~~~v~t~~~a~~a~~~Gad~i~~~~ 158 (230)
T d1yxya1 132 LLMADISTFDEGLVAHQAGIDFVGTTL 158 (230)
T ss_dssp EEEEECSSHHHHHHHHHTTCSEEECTT
T ss_pred eEecCCCCHHHHHHHHhcCCCEEEeec
Confidence 455689999999999999999998865
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=95.54 E-value=0.035 Score=47.99 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=56.5
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~k----al~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-.. --.+++..+.+.+++++|||+.-|-.+..++++ |..+|||++++..++.
T Consensus 30 i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP~~ 109 (292)
T d1xkya1 30 VNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY 109 (292)
T ss_dssp HHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45667899999999776653211111 123456666666777899999888777777654 4458999999998876
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 110 ~~~s~~~ 116 (292)
T d1xkya1 110 NKPSQEG 116 (292)
T ss_dssp SCCCHHH
T ss_pred CCCCHHH
Confidence 6655443
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.54 E-value=0.0076 Score=50.99 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 266 ~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
..+.+..+++.+ .++||++-+||+|++++.++.. +||+|.+|++|..
T Consensus 174 ~~~~~~~~~k~~-~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaive 220 (231)
T d2f6ua1 174 NPELVAEVKKVL-DKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE 220 (231)
T ss_dssp CHHHHHHHHHHC-SSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred hhhHHHHHHHhc-CCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHhc
Confidence 345555666655 3799999999999999988665 8999999999853
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.53 E-value=0.046 Score=47.48 Aligned_cols=82 Identities=23% Similarity=0.271 Sum_probs=56.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+.+.|++++.+.++.|....-... -.+++..+.+.+++++||++.-|-.+..++.+. ..+|||++++..++.
T Consensus 34 i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P~~ 113 (296)
T d1xxxa1 34 ANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYY 113 (296)
T ss_dssp HHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 456788999999998776643221111 234555566677778999987777777776643 448999999999887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+..+.
T Consensus 114 ~~~~~~~ 120 (296)
T d1xxxa1 114 SKPPQRG 120 (296)
T ss_dssp SCCCHHH
T ss_pred CCCCHHH
Confidence 7665443
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=95.50 E-value=0.36 Score=42.63 Aligned_cols=96 Identities=28% Similarity=0.463 Sum_probs=65.7
Q ss_pred CHHHHHHHHHhcCCCEEEe-c-cCCHHH----HHHHHHcCCCEEEEcCCCCCCCCC-C--cchHHHHHHHHHHhcCCCeE
Q 020636 213 SWKDVKWLQTITKLPILVK-G-VLTAED----ARIAVQAGAAGIIVSNHGARQLDY-V--PATIMALEEVVKATQGRIPV 283 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK-~-i~~~e~----a~~~~~~Gad~i~vs~~gg~~~~~-~--~~~~~~l~~i~~~~~~~~pv 283 (323)
+.+.++++-+ ++.||.+| | ..++++ ++.+...|-+-|++.-+|-+...+ . ..++..++.+++.. ..||
T Consensus 190 n~~LL~~~g~-t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~~~i~~~k~~~--~lPV 266 (338)
T d1vr6a1 190 NFRLLSKAGS-YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKES--HLPI 266 (338)
T ss_dssp CHHHHHHHHT-TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB--SSCE
T ss_pred CHHHHHHhhc-cCCcEEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccchhhcccceeeccc--cCce
Confidence 3556666654 58899999 4 367877 566678999999998776432221 1 23455677666654 6899
Q ss_pred EEe----cCCCCHHH--HHHHHHcCCCEEEEccc
Q 020636 284 FLD----GGVRRGTD--VFKALALGASGIFVSIM 311 (323)
Q Consensus 284 ia~----GGI~~~~d--i~kal~lGAd~V~iG~~ 311 (323)
|.| ||-|..-- ...|+++|||++++=+.
T Consensus 267 i~DpsHs~G~r~~v~~larAAvA~GadGl~iE~H 300 (338)
T d1vr6a1 267 LVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVH 300 (338)
T ss_dssp EECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBC
T ss_pred eeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeC
Confidence 985 67666543 34778899999999764
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=95.42 E-value=0.021 Score=47.20 Aligned_cols=92 Identities=20% Similarity=0.152 Sum_probs=58.0
Q ss_pred HHHHHHHhc--CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCC-----CCCCCCc-----ch---HHHHHHHHHHhcCC
Q 020636 216 DVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLDYVP-----AT---IMALEEVVKATQGR 280 (323)
Q Consensus 216 ~i~~i~~~~--~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg-----~~~~~~~-----~~---~~~l~~i~~~~~~~ 280 (323)
..+.+|+.. +.|+++-++.+.-.|+.+.++|+|+|.+++.|- ...+.+. .. ++...++...+ .+
T Consensus 8 ~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v-~~ 86 (197)
T d2p10a1 8 LVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVV-RH 86 (197)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGC-SS
T ss_pred HHHHHHHHHhCCCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHHHHHHHHhc-cc
Confidence 345555544 678999999999999999999999999977541 1111111 11 22222332222 26
Q ss_pred CeEEEecC----CCCHHHHHHH-HHcCCCEEEE
Q 020636 281 IPVFLDGG----VRRGTDVFKA-LALGASGIFV 308 (323)
Q Consensus 281 ~pvia~GG----I~~~~di~ka-l~lGAd~V~i 308 (323)
+|||++.+ ..+-...++- .++|+.+|++
T Consensus 87 iPviaD~dG~g~~~nv~rtv~~~~~aG~agI~~ 119 (197)
T d2p10a1 87 TPVLAGVNGTDPFMVMSTFLRELKEIGFAGVQN 119 (197)
T ss_dssp SCEEEEECTTCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred CceEEecCCCCcchhHHHHHHHHHHcCCeEEec
Confidence 99999764 3444444444 4589999976
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.27 E-value=0.013 Score=48.51 Aligned_cols=105 Identities=21% Similarity=0.194 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCCEEE--eccC---CH-HHHHHHHHcCCCEEEEcCCCCCC----------------C------C-----
Q 020636 215 KDVKWLQTITKLPILV--KGVL---TA-EDARIAVQAGAAGIIVSNHGARQ----------------L------D----- 261 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~v--K~i~---~~-e~a~~~~~~Gad~i~vs~~gg~~----------------~------~----- 261 (323)
+.++++++..+.|++. |... |. ..++.+.++|+|.+.|+..+|.. + +
T Consensus 41 ~~i~~l~~~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (206)
T d2czda1 41 DIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPL 120 (206)
T ss_dssp THHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGGG
T ss_pred HHHHHHHHhcCCeEEEEeeeeeecccchheehhhccccccEEEeeecccHHHHHHhhhcccceEEEeccCCcccccccHH
Confidence 4577787776776543 4332 22 33677788999999997765531 0 0
Q ss_pred -----------------CCcchHHHHHHHHHHhcCCCeEEEecCCC-CHHHHHHHHHcCCCEEEEccccccCcchhh
Q 020636 262 -----------------YVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALALGASGIFVSIMPCQCPLTEK 320 (323)
Q Consensus 262 -----------------~~~~~~~~l~~i~~~~~~~~pvia~GGI~-~~~di~kal~lGAd~V~iG~~~~~~~~~~~ 320 (323)
......+.+..+++.++....++ ..||+ .+.+..+++..|||.+.+||+....++-.+
T Consensus 121 ~~~~~~~a~~~~~~g~~~~~~~~~~~~~~r~~~~~~~~i~-~pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~ 196 (206)
T d2czda1 121 TDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKIL-APGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPRE 196 (206)
T ss_dssp HHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEEE-ECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHH
T ss_pred HHHHHHHHHhcccccccccccCchhhhhhhhhhcccceEE-CCCccccCCCHHHHHHhCCCEEEEChhhccCCCHHH
Confidence 01112233444444443344444 45555 345778889999999999999988776443
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=95.21 E-value=0.039 Score=46.98 Aligned_cols=74 Identities=23% Similarity=0.248 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEe-----cCCC-CH-------HHHHHHH
Q 020636 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVR-RG-------TDVFKAL 299 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~-----GGI~-~~-------~di~kal 299 (323)
+.+.++|..|.+.|||.|.+...- ...|-.|++.++..+++.+ ++||.+. |++. |. .|+..+.
T Consensus 7 v~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~--~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k 82 (247)
T d1twda_ 7 CYSMECALTAQQNGADRVELCAAP--KEGGLTPSLGVLKSVRQRV--TIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVR 82 (247)
T ss_dssp ESSHHHHHHHHHTTCSEEEECBCG--GGTCBCCCHHHHHHHHHHC--CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEEcCCc--ccCCCCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999986421 1122357888888888887 8999883 4443 33 3566677
Q ss_pred HcCCCEEEEcc
Q 020636 300 ALGASGIFVSI 310 (323)
Q Consensus 300 ~lGAd~V~iG~ 310 (323)
.+||++|++|-
T Consensus 83 ~~G~dGvV~G~ 93 (247)
T d1twda_ 83 ELGFPGLVTGV 93 (247)
T ss_dssp HTTCSEEEECC
T ss_pred HcCCCeEEEEE
Confidence 79999999994
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=95.09 E-value=0.44 Score=38.49 Aligned_cols=71 Identities=10% Similarity=-0.024 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
...++.+.+.++|+|.|.+...-.. .......+.+..+.+.. ..++..+++.|..+..++.+.|+|.+.++
T Consensus 76 ~~~~~~~~~~~agad~v~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~v~~~~~t~~~a~~~~~~g~d~i~~~ 146 (222)
T d1y0ea_ 76 ATSKEVDELIESQCEVIALDATLQQ--RPKETLDELVSYIRTHA---PNVEIMADIATVEEAKNAARLGFDYIGTT 146 (222)
T ss_dssp CSHHHHHHHHHHTCSEEEEECSCSC--CSSSCHHHHHHHHHHHC---TTSEEEEECSSHHHHHHHHHTTCSEEECT
T ss_pred ccHHHHHhHHHcCCCEEEeeccccc--cccchHHHHHHHHHHhC---CceEEeecCCCHHHHHHHHHcCCCeEEEe
Confidence 4577888889999999987532211 11122334454554432 34556678999999999999999999875
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=95.07 E-value=0.049 Score=45.00 Aligned_cols=81 Identities=22% Similarity=0.149 Sum_probs=57.6
Q ss_pred CHHHHHHHHHhc--CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 213 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
..+.|+.+++.. +.-+-+..+.+.++++.+.++|++.++- - + .+.+++....+. .+|++ =|+.
T Consensus 47 a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivs-P--~-------~~~~v~~~~~~~---~i~~i--PGv~ 111 (202)
T d1wa3a1 47 ADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVS-P--H-------LDEEISQFCKEK---GVFYM--PGVM 111 (202)
T ss_dssp HHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEEC-S--S-------CCHHHHHHHHHH---TCEEE--CEEC
T ss_pred HHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeC-C--C-------CcHHHHHHHHhc---CCcee--CCcC
Confidence 356677776543 2334455789999999999999999862 1 1 123444444432 45555 4799
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 020636 291 RGTDVFKALALGASGIFV 308 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~i 308 (323)
|+.++.+|+.+||+.+-+
T Consensus 112 TpsEi~~A~~~G~~~lK~ 129 (202)
T d1wa3a1 112 TPTELVKAMKLGHTILKL 129 (202)
T ss_dssp SHHHHHHHHHTTCCEEEE
T ss_pred cHHHHHHHHHCCCCEEEe
Confidence 999999999999999976
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=95.01 E-value=0.038 Score=49.13 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=52.4
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
..+.+..+.++|+|.++++...|+ .....+.+..+++..+ +++||+ |.+.+.+.+.+.+..|||+|-+|
T Consensus 99 ~~e~~~~li~agvd~ivId~A~G~----~~~~~~~ik~ik~~~~-~~~via-GnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 99 TMERVEKLVKAGVDVIVIDTAHGH----SRRVIETLEMIKADYP-DLPVVA-GNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCS----SHHHHHHHHHHHHHCT-TSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEecCCCC----chhHHHHHHHHHHhCC-CCCEEe-echhHHHHHHHHHHcCCCEEeec
Confidence 456678889999999998653332 1234567777776653 677776 88999999999999999999886
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=94.96 E-value=0.021 Score=49.48 Aligned_cols=64 Identities=27% Similarity=0.248 Sum_probs=43.6
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 277 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~ 277 (323)
...+.++.+|+.++.|+.+. ||.++++++.+ .+||+++|..+-=+.+.........+.++.+.+
T Consensus 189 ~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i~e~~~~~~~~~~i~~~l 253 (271)
T d1ujpa_ 189 EVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGRSLAPLLQEIRQGL 253 (271)
T ss_dssp CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34667999999999999999 88999999875 599999994321011111123444566666655
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.43 Score=41.08 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH-HHHHHHHcCCCEEEE
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFV 308 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~-di~kal~lGAd~V~i 308 (323)
.++++|+... +.|+|.+-++- ||-.. ....-.++.|.++.+.+ ++|+..=||=..+. ++.+++..|..-|=|
T Consensus 154 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~-~~p~l~~~~L~~i~~~~--~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi 230 (284)
T d1gvfa_ 154 TDPQEAKRFVELTGVDSLAVAIGTAHGLYS-KTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 230 (284)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSCCS-SCCCCCHHHHHHHHHHC--CSCEEECCCTTCCHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHhCCCEEeeecCceeeccC-CCCccccchhhhhhccc--cCCeEeeCCCCCCHHHHHHHHHcCeEEEEe
Confidence 5788887665 79999999974 44321 11123568899999988 79999988665555 566788899999999
Q ss_pred cccc
Q 020636 309 SIMP 312 (323)
Q Consensus 309 G~~~ 312 (323)
+|-+
T Consensus 231 ~T~l 234 (284)
T d1gvfa_ 231 ATEL 234 (284)
T ss_dssp CHHH
T ss_pred chHH
Confidence 9865
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.43 E-value=0.21 Score=43.34 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..++.++++++.. ++||+.- ||.+.+|+.+.+.+|||+|-+.
T Consensus 241 ~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ 284 (312)
T d1gtea2 241 IALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVC 284 (312)
T ss_dssp HHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred hhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEEC
Confidence 3567888888887 4787655 6899999999999999999884
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=94.33 E-value=0.11 Score=44.77 Aligned_cols=90 Identities=24% Similarity=0.246 Sum_probs=60.4
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCC----CCCCCcch----HHHHHHHHHHhcCCCeEEEec-
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPAT----IMALEEVVKATQGRIPVFLDG- 287 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~----~~~~~~~~----~~~l~~i~~~~~~~~pvia~G- 287 (323)
++.+.+. +.++++-++.+.-.|+.+.++|++++.+|+++-. ..|.+.-+ ++.+..|...+ ++||++|+
T Consensus 8 lr~l~~~-~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~--~lPv~~D~d 84 (275)
T d1s2wa_ 8 LKQMLNS-KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS--DVPILLDAD 84 (275)
T ss_dssp HHHHHHS-SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC--SSCEEEECC
T ss_pred HHHHHhC-CCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhccc--CCceeEecc
Confidence 3444332 5678888999999999999999999999876411 13433222 34555666655 89999976
Q ss_pred -CCCCHHHHH----HHHHcCCCEEEEc
Q 020636 288 -GVRRGTDVF----KALALGASGIFVS 309 (323)
Q Consensus 288 -GI~~~~di~----kal~lGAd~V~iG 309 (323)
|..++.++. +....||.++.|=
T Consensus 85 ~GyG~~~~v~~tv~~~~~aGaagi~iE 111 (275)
T d1s2wa_ 85 TGYGNFNNARRLVRKLEDRGVAGACLE 111 (275)
T ss_dssp SSCSSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccccchHHHHHHHHHHHhccceeEee
Confidence 777777665 4445899999884
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=94.29 E-value=0.22 Score=44.04 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=63.8
Q ss_pred HHhcCCCceeEEeee------cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccC
Q 020636 117 VASTGPGIRFFQLYV------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLG 190 (323)
Q Consensus 117 i~~~~~~~~~~QLy~------~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~ 190 (323)
|++..+.+.++.+-. ..+.+...++++.++++|.+.+.++...... +. .
T Consensus 203 ir~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~-------------~~---------~--- 257 (337)
T d1z41a1 203 VKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVH-------------AD---------I--- 257 (337)
T ss_dssp HHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSC-------------CC---------C---
T ss_pred HhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccc-------------cc---------c---
Confidence 444445556665532 2356667778888888998888776543221 00 0
Q ss_pred CCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 191 KMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
...|....+..+.+|+.+++||++-| +.++++|+.+++.| +|.|.+
T Consensus 258 ----------------~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~ 305 (337)
T d1z41a1 258 ----------------NVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI 305 (337)
T ss_dssp ----------------CCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred ----------------ccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehh
Confidence 01133456677889999999998765 57899999999998 998876
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.1 Score=44.96 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=53.6
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 239 a~~~~~~Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
++.+.+.|+++|.+.++.|....-... -.+++..+.+.+.+++|+|+.-|-.+..++.+. -.+|||++++-.++.
T Consensus 29 i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p~~ 108 (295)
T d1hl2a_ 29 VQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFY 108 (295)
T ss_dssp HHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCceeeeeeccc
Confidence 445678899999998776642111111 234555566667778999986666666666543 348999999998876
Q ss_pred cCcchh
Q 020636 314 QCPLTE 319 (323)
Q Consensus 314 ~~~~~~ 319 (323)
..+..+
T Consensus 109 ~~~~~~ 114 (295)
T d1hl2a_ 109 YPFSFE 114 (295)
T ss_dssp SCCCHH
T ss_pred cCCChH
Confidence 655433
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.22 E-value=0.045 Score=45.28 Aligned_cols=104 Identities=16% Similarity=0.062 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCCEE--EeccC---CH-HHHHHHHHcCCCEEEEcCCCCCC---------------------C------
Q 020636 214 WKDVKWLQTITKLPIL--VKGVL---TA-EDARIAVQAGAAGIIVSNHGARQ---------------------L------ 260 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~--vK~i~---~~-e~a~~~~~~Gad~i~vs~~gg~~---------------------~------ 260 (323)
.+.++++++.++.|++ .|... +. ..++.+.++|+|.+.|+..+|.. +
T Consensus 43 ~~~v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s~~~~~ 122 (212)
T d1km4a_ 43 MDIIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAE 122 (212)
T ss_dssp THHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCSSGGGG
T ss_pred HHHHHHHHHhcccceehhhhhhccccHHHHhHhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhcchhhh
Confidence 4567888888887876 45432 22 33677789999999998766531 0
Q ss_pred -------------------C---CCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCCCEEEEccccccCcc
Q 020636 261 -------------------D---YVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 261 -------------------~---~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~-~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
+ +.....+.+..+++.++ .-.++.++||+.. .+..+++ .|||.+.+||+....++
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~g~v~~~~~~~~i~~ir~~~~-~~~~~vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~a~d 200 (212)
T d1km4a_ 123 MFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIG-QDSFLISPGVGAQGGDPGETL-RFADAIIVGRSIYLADN 200 (212)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEECCTTCHHHHHHHHHHHC-SSSEEEECCBSTTSBCHHHHT-TTCSEEEECHHHHTSSS
T ss_pred hhhhhHHHHHHHHHHHhCCccccccccCHHHHhhhhhccC-CceeEEcCccccCCCCHHHHH-hhCCEEEECchhccCCC
Confidence 0 01122344455555443 3457788999743 3333343 58999999999988665
Q ss_pred hh
Q 020636 318 TE 319 (323)
Q Consensus 318 ~~ 319 (323)
-.
T Consensus 201 P~ 202 (212)
T d1km4a_ 201 PA 202 (212)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=94.20 E-value=0.55 Score=40.81 Aligned_cols=77 Identities=29% Similarity=0.355 Sum_probs=57.8
Q ss_pred CCHHHHHHHH-HcCCCEEEEcC---CCCCCCCCCc-chHHHHHHHHHHhcCCCeEEEecCC-------------------
Q 020636 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGV------------------- 289 (323)
Q Consensus 234 ~~~e~a~~~~-~~Gad~i~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~~pvia~GGI------------------- 289 (323)
.++++|+... +.|+|.+-++- ||-......+ -.++.|.+|.+.+ ++|+..-||=
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~--~~PLVlHGgS~vp~~~~~~~~~~g~~lhg 230 (305)
T d1rvga_ 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV--PAPLVLHGASAVPPELVERFRASGGEIGE 230 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC--CSCEEECSCCCCCHHHHHHHHHTTCCCCS
T ss_pred CCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhcc--CCCeeccCCccccHHHHhhhcccCcccCC
Confidence 5789988854 79999999974 4432211111 4678999999988 8999998863
Q ss_pred ---CCHHHHHHHHHcCCCEEEEcccc
Q 020636 290 ---RRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 290 ---~~~~di~kal~lGAd~V~iG~~~ 312 (323)
-+-+|+.+++..|..-|=++|-+
T Consensus 231 ~sG~~~e~i~~ai~~GV~KiNi~T~l 256 (305)
T d1rvga_ 231 AAGIHPEDIKKAISLGIAKINTDTDL 256 (305)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHcCeEEEEeChHH
Confidence 23688999999999888888755
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=94.18 E-value=0.043 Score=47.80 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=54.0
Q ss_pred HHhcCCCEEEecc---------CC-H----HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCe-EEE
Q 020636 221 QTITKLPILVKGV---------LT-A----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP-VFL 285 (323)
Q Consensus 221 ~~~~~~pv~vK~i---------~~-~----e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~p-via 285 (323)
.+.+++|+++=.+ .+ + +-++.+.+.|+|.+.+---|... ...........++...+ .+| |+.
T Consensus 149 c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~~~-~~~~~~~~~~~~~~~~~--~~p~vvL 225 (291)
T d1to3a_ 149 CHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGK-GARSDLLTASQRLNGHI--NMPWVIL 225 (291)
T ss_dssp HHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGC-SCHHHHHHHHHHHHHTC--CSCEEEC
T ss_pred HHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCCch-hhhHHHHHHHHHHhhcC--CCcEEEE
Confidence 3456888776532 11 2 22567779999999884211100 00011223344444444 678 677
Q ss_pred ecCCCCHHHHHHH----HHcCCCEEEEccccccCc
Q 020636 286 DGGVRRGTDVFKA----LALGASGIFVSIMPCQCP 316 (323)
Q Consensus 286 ~GGI~~~~di~ka----l~lGAd~V~iG~~~~~~~ 316 (323)
+||. +.+++.+. +..||.++.+||....+|
T Consensus 226 s~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~ 259 (291)
T d1to3a_ 226 SSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSSV 259 (291)
T ss_dssp CTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGGG
T ss_pred eCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhCc
Confidence 7786 45666654 448999999999876654
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=94.12 E-value=0.12 Score=45.18 Aligned_cols=88 Identities=22% Similarity=0.386 Sum_probs=59.5
Q ss_pred cCCCceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchh
Q 020636 120 TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG 199 (323)
Q Consensus 120 ~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (323)
..+.|..+.+....|.....+.+++++++|++.+.|+--+.. .+
T Consensus 120 ~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~---------q~--------------------------- 163 (305)
T d1vhna_ 120 SVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVV---------QS--------------------------- 163 (305)
T ss_dssp HCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTT---------TT---------------------------
T ss_pred hcccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhh---------hc---------------------------
Confidence 344566666665556555667788888888888887731110 00
Q ss_pred hHHHHhhccCCccCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHH-cCCCEEEEc
Q 020636 200 LAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQ-AGAAGIIVS 253 (323)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~-~Gad~i~vs 253 (323)
..+..+|+.|+.+++ ++|++.- ++.+.+|+..+.+ .|+|+|.+.
T Consensus 164 --------~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiG 209 (305)
T d1vhna_ 164 --------FTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVA 209 (305)
T ss_dssp --------TSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEES
T ss_pred --------cccchhhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEehh
Confidence 123346777777766 4888776 4789999999875 799999873
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=93.84 E-value=0.043 Score=47.19 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEcC
Q 020636 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
.+.++.+|+.++.|+.+. ||.++++++.+.+.|+|+++|..
T Consensus 189 ~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGS 230 (261)
T d1rd5a_ 189 ESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGS 230 (261)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECH
Confidence 456899999999999999 88999999999999999999943
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=93.80 E-value=0.18 Score=42.91 Aligned_cols=74 Identities=20% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccccC
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~~ 315 (323)
.+.|+...+.||++|.|-.- ...-..+++.|..+++.+ ++||+.--=|-+..++.++..+|||+|.+--.++..
T Consensus 68 ~~~A~~y~~~GA~aiSVLTe----~~~F~Gs~~dl~~v~~~~--~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall~~ 141 (254)
T d1vc4a_ 68 VEAALAYARGGARAVSVLTE----PHRFGGSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGE 141 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECC----CSSSCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGG
T ss_pred HHHHHHHHhcCCceEEEEcC----cccccccHHHHHHHHHHc--CCCcccCCccccHHHHHHHHhccchHHHHHHHHHHH
Confidence 56688889999999988531 111123577788888887 899999999999999999999999999987666543
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.12 Score=44.85 Aligned_cols=90 Identities=22% Similarity=0.375 Sum_probs=62.4
Q ss_pred HHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCC--C---CCCCCcch----HHHHHHHHHHhcCCCeEEEec
Q 020636 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA--R---QLDYVPAT----IMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg--~---~~~~~~~~----~~~l~~i~~~~~~~~pvia~G 287 (323)
++++.+. +.|+.+=++.+.-.|+.+.++|++++.+|+.+- . ..|.+.-+ ++.+..|.+.+ ++|||+|+
T Consensus 8 lr~ll~~-~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~--~~Pvi~D~ 84 (289)
T d1muma_ 8 FRAALTK-ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC--SLPLLVDA 84 (289)
T ss_dssp HHHHHHH-CSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHC--CSCEEEEC
T ss_pred HHHHHhC-CCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhccc--CCCeeecc
Confidence 3444432 568999999999999999999999999976431 0 23544333 34566666776 89999987
Q ss_pred --CCCC-HHHH----HHHHHcCCCEEEEc
Q 020636 288 --GVRR-GTDV----FKALALGASGIFVS 309 (323)
Q Consensus 288 --GI~~-~~di----~kal~lGAd~V~iG 309 (323)
|..+ +..+ .+..+.|+.+|.|=
T Consensus 85 d~GyG~~~~~v~~~v~~~~~aGvagi~iE 113 (289)
T d1muma_ 85 DIGFGSSAFNVARTVKSMIKAGAAGLHIE 113 (289)
T ss_dssp TTCSSSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cccccccchHHHHHHHHHHHCCCCEEEec
Confidence 4443 4343 34556899999883
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=93.18 E-value=0.21 Score=42.90 Aligned_cols=81 Identities=9% Similarity=0.022 Sum_probs=52.4
Q ss_pred HHHHHc-CCCEEEEcCCCCCCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCCCEEEEccccc
Q 020636 240 RIAVQA-GAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFVSIMPC 313 (323)
Q Consensus 240 ~~~~~~-Gad~i~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~~pvia~GGI~~~~di~ka----l~lGAd~V~iG~~~~ 313 (323)
+.+++. |+++|.+.++.|....-... -.+++..+.+..++++||++.-|=.+..|+.+. -.+|||++++..++.
T Consensus 31 ~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP~~ 110 (293)
T d1f74a_ 31 RHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY 110 (293)
T ss_dssp HHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECCCCCS
T ss_pred HHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCCCEeeccCccc
Confidence 334554 99999997765532111111 234555566666778999986666777777653 347999999998887
Q ss_pred cCcchhh
Q 020636 314 QCPLTEK 320 (323)
Q Consensus 314 ~~~~~~~ 320 (323)
..+...+
T Consensus 111 ~~~s~~~ 117 (293)
T d1f74a_ 111 YKFSFPE 117 (293)
T ss_dssp SCCCHHH
T ss_pred cccchHH
Confidence 6554433
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=93.14 E-value=0.11 Score=46.64 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
.+.++.+.++|+|.|++....|+. ....+.+..+.+..+.++|||+ |.|-|++.+...+..|||+|-+|-
T Consensus 112 ~~~~~~L~~ag~d~i~IDvAhG~~----~~v~~~i~~ir~~~~~~~~IiA-GNVaT~e~~~~L~~aGaD~vkVGI 181 (362)
T d1pvna1 112 RERVPALVEAGADVLCIDSSDGFS----EWQKITIGWIREKYGDKVKVGA-GNIVDGEGFRYLADAGADFIKIGI 181 (362)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCCB----HHHHHHHHHHHHHHGGGSCEEE-EEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHhhcCceEEeechhccch----hHHHHHHHHHHHhhccceeeec-ccccCHHHHHHHHHhCCcEEEecc
Confidence 455788899999999986544431 2234666667655544577765 899999999999999999999983
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.76 E-value=0.17 Score=45.68 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+.+..+.++|+|.+++....|. .....+.+..+++..+ +++|| .|.+.|.+.+.+++.+|||+|-+|-
T Consensus 122 ~~~~~l~~agv~vi~id~a~g~----~~~~~~~i~~ik~~~~-~~~iI-aGnVaT~e~a~~L~~aGAD~VkVGi 189 (378)
T d1jr1a1 122 YRLDLLALAGVDVVVLDSSQGN----SIFQINMIKYMKEKYP-NLQVI-GGNVVTAAQAKNLIDAGVDALRVGM 189 (378)
T ss_dssp HHHHHHHHHTCCEEEECCSSCC----SHHHHHHHHHHHHHST-TCEEE-EEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHhhccceEeeeccCcc----chhhHHHHHHHHHHCC-CCcee-ecccccHHHHHHHHHhCCCEEeecc
Confidence 3467778999999998653332 1234456666666543 67776 5999999999999999999998874
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=92.67 E-value=2.6 Score=35.88 Aligned_cols=168 Identities=20% Similarity=0.214 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCCcee-----ecCCCCCCHHHHHh--------cC---C--CceeEEeeecCChHHHHHHHHHHHHcCCcE
Q 020636 91 YATARAASAAGTIMT-----LSSWSTSSVEEVAS--------TG---P--GIRFFQLYVYKDRNVVAQLVRRAERAGFKA 152 (323)
Q Consensus 91 ~~~a~aa~~~G~~~~-----vs~~s~~~~eei~~--------~~---~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~a 152 (323)
..++.....-|+-++ +++..-++++|..+ +. . ..+.+.+ ..+.+.+.+..+.+++.|..+
T Consensus 38 a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lya~Ni--T~~~~em~~ra~~~~~~G~~~ 115 (283)
T d1ykwa1 38 AEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGEPKIYLANI--TDEVDSLMEKHDVAVRNGANA 115 (283)
T ss_dssp HHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEEC--CCCGGGHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHhCCCceecCCccCCCCCCccHHHHHHHHHHHHHHHHHHhCCeeEEeeec--CCCHHHHHHHHHHHHHhCCCE
Confidence 367777778888886 34444456655321 11 1 2244444 467777777778888889998
Q ss_pred EEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHHhcCCCEEEec
Q 020636 153 IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG 232 (323)
Q Consensus 153 l~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~vK~ 232 (323)
+.|++. ..| |..++.+++..++||...-
T Consensus 116 ~mv~~~--~~G--------------------------------------------------~~a~~~l~~~~~lpi~~H~ 143 (283)
T d1ykwa1 116 LLINAL--PVG--------------------------------------------------LSAVRMLSNYTQVPLIGHF 143 (283)
T ss_dssp EEEEHH--HHC--------------------------------------------------HHHHHHHHHHCSSCEEEEC
T ss_pred EEEecc--cch--------------------------------------------------HHHHHHHHhhcCCCeEeee
Confidence 887641 111 2334444554455555542
Q ss_pred c-------------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh------cCCCeEEEecCCCCHH
Q 020636 233 V-------------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT------QGRIPVFLDGGVRRGT 293 (323)
Q Consensus 233 i-------------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~------~~~~pvia~GGI~~~~ 293 (323)
. ...--++..--+|+|.|.+.+.||+..+. .-+++....... +.-+||+ +||+ ++.
T Consensus 144 a~~g~~~r~~~~Gis~~vl~KL~RLaGaD~ih~~~~gg~~~~~---~e~~~~~~~~~~~~~~~~k~~~Pv~-sGG~-~~~ 218 (283)
T d1ykwa1 144 PFIASFSRMEKYGIHSKVMTKLQRLAGLDAVIMPGFGDRVMTP---EEEVLENVIECTKPMGRIKPCLPVP-GGSD-SAL 218 (283)
T ss_dssp TTTHHHHCSTTSEECHHHHHHHHHHHTCSEEEEECSSTTSSSC---HHHHHHHHHHHHSCCTTCCCCEEEE-ECSB-CTT
T ss_pred ccceeeccCcCCCccHHHHHHHHHHcCCCceeecCCcccccCc---hHHHHHHHHHhcCcccccCCceeec-cCCc-chh
Confidence 1 11122455556899999998888764322 223332222211 2236774 5665 455
Q ss_pred HHHHHHH-cC-CCEEE-EccccccCcc
Q 020636 294 DVFKALA-LG-ASGIF-VSIMPCQCPL 317 (323)
Q Consensus 294 di~kal~-lG-Ad~V~-iG~~~~~~~~ 317 (323)
.+-..+. +| .|.+. +|..++++|+
T Consensus 219 ~vp~~~~~~G~~Dvil~aGGGi~gHP~ 245 (283)
T d1ykwa1 219 TLQTVYEKVGNVDFGFVPGRGVFGHPM 245 (283)
T ss_dssp THHHHHHHHCSSCSEECBSSSSSSCTT
T ss_pred hhHHHHHhcCCceEEEecCcccccCCC
Confidence 5555664 79 57665 6889999986
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=92.30 E-value=2.8 Score=36.07 Aligned_cols=71 Identities=18% Similarity=0.042 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHHcCCceee-----cCCCCCCHHHHHh--------c---CCCceeEEeeecCChHHHHHHHHHHHHcCC
Q 020636 87 PEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS--------T---GPGIRFFQLYVYKDRNVVAQLVRRAERAGF 150 (323)
Q Consensus 87 ~~~e~~~a~aa~~~G~~~~v-----s~~s~~~~eei~~--------~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~ 150 (323)
|+.-..++.....-|+-++= .+..-+++||..+ + ......+=.....+.+.+.+..++++++|+
T Consensus 34 ~~~~a~~~~~~~~GGvD~IKDDe~la~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lYa~NiT~~~~em~~ra~~a~~~G~ 113 (307)
T d1geha1 34 PEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGL 113 (307)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCTTCCCCTTSCHHHHHHHHHHHHHHHHHHTCSCCEEECBCCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCeeeCCccccCCCCCcHHHHHHHHHHHHHHHHHHhCCeeEEEEEccCChHHHHHHHHHHHHcCC
Confidence 33334678888888988873 3344456655321 1 122222222224677777778888889999
Q ss_pred cEEEEec
Q 020636 151 KAIALTV 157 (323)
Q Consensus 151 ~al~itv 157 (323)
+++.|++
T Consensus 114 ~~vmi~~ 120 (307)
T d1geha1 114 KHAMVDV 120 (307)
T ss_dssp CEEEEEH
T ss_pred CEEEEec
Confidence 9998774
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.28 E-value=1.1 Score=33.25 Aligned_cols=88 Identities=9% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHH------cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQ------AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~------~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.+.++.+-+.++.. .+....+.++|..+.+ ...|.|.+.-+-. ....++++.++++....++|||+-.
T Consensus 14 ~~~l~~~L~~~g~~-~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP-----~~dG~el~~~ir~~~~~~~piI~lT 87 (128)
T d2r25b1 14 QEVIKRMLNLEGIE-NIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP-----KVDGLLSTKMIRRDLGYTSPIVALT 87 (128)
T ss_dssp HHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCS-----SSCHHHHHHHHHHHSCCCSCEEEEE
T ss_pred HHHHHHHHHHcCCe-EEEEEcChHHHHHHHHhhhhccCCCCEEEEEeCCC-----CCCHHHHHHHHHHccCCCCeEEEEE
Confidence 44455555556543 2344567788765543 3578887754321 1345788888876654478999999
Q ss_pred CCCCHHHHHHHHHcCCCEEE
Q 020636 288 GVRRGTDVFKALALGASGIF 307 (323)
Q Consensus 288 GI~~~~di~kal~lGAd~V~ 307 (323)
+..+..+..+++.+||+...
T Consensus 88 ~~~~~~~~~~~~~~G~~~~l 107 (128)
T d2r25b1 88 AFADDSNIKECLESGMNGFL 107 (128)
T ss_dssp SCCSHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHHHcCCCEEE
Confidence 99999999999999999773
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.14 E-value=1.1 Score=37.87 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.++|+.+.++||..|++-. -+.++-.+|.+.+ ++|+|.-|
T Consensus 165 ~~da~~le~AGa~~ivlE~----------Vp~~la~~It~~~--~IPtIGIG 204 (262)
T d1oy0a_ 165 IADAIAVAEAGAFAVVMEM----------VPAELATQITGKL--TIPTVGIG 204 (262)
T ss_dssp HHHHHHHHHHTCSEEEEES----------CCHHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHHhCCcEEEeccc----------ccHhHHHHHHhhC--CceEEEec
Confidence 3568889999999999854 3456677888888 89999755
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.91 E-value=2.5 Score=34.78 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
.++.+.+.++.+.+.||+++=+.+..+.... ..+...+
T Consensus 23 tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~------------------------------------------~~~~~~d 60 (255)
T d1rvka1 23 TPEDYGRFAETLVKRGYKGIKLHTWMPPVSW------------------------------------------APDVKMD 60 (255)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCTTSTT------------------------------------------CCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCcccc------------------------------------------ccCHHHH
Confidence 4677777888888889999987765432100 0122234
Q ss_pred HHHHHHHHHhcC--CCEEEe--ccCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTITK--LPILVK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~~--~pv~vK--~i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.++.+|+.++ ..+.+= ...+.++| +.+.+.+...+-= ...+..++.+.++++.+ ++||.+
T Consensus 61 ~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~l~~~~--~~pI~~ 130 (255)
T d1rvka1 61 LKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWIEE--------PMDEQSLSSYKWLSDNL--DIPVVG 130 (255)
T ss_dssp HHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEEEC--------CSCTTCHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHHHHHHcCCccceecccccccccchhhhhhhhcccchhhhhcC--------CcccccHHHHHHHHHhc--ccceee
Confidence 667888998873 344443 23566665 4445566655531 01123567788888887 799999
Q ss_pred ecCCCCHH-HHHHHHHcC-CCEEEEccccc
Q 020636 286 DGGVRRGT-DVFKALALG-ASGIFVSIMPC 313 (323)
Q Consensus 286 ~GGI~~~~-di~kal~lG-Ad~V~iG~~~~ 313 (323)
+..+.+.. +..+++..| +|.+++--..+
T Consensus 131 ~E~~~~~~~~~~~~i~~~~~dii~~d~~~~ 160 (255)
T d1rvka1 131 PESAAGKHWHRAEWIKAGACDILRTGVNDV 160 (255)
T ss_dssp CSSCSSHHHHHHHHHHTTCCSEEEECHHHH
T ss_pred hhhcccchhhhhhhhhhchhhhcccccccc
Confidence 99998875 567788876 88888764443
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=91.90 E-value=2 Score=34.88 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcC--CCEEEe--ccCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 020636 214 WKDVKWLQTITK--LPILVK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (323)
Q Consensus 214 ~~~i~~i~~~~~--~pv~vK--~i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia 285 (323)
.+.|+.+|+.++ ..+.+= ...+.++| +.+.+.|...+-= ...+..++.+.++++.+ ++||.+
T Consensus 44 i~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~iEe--------P~~~~~~~~~~~l~~~~--~ipia~ 113 (227)
T d2mnra1 44 LAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEE--------PTLQHDYEGHQRIQSKL--NVPVQM 113 (227)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHTCSEEEC--------CSCTTCHHHHHHHHHTC--SSCEEE
T ss_pred HHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhhhchhhhhcC--------cccccchhhhHHHHHHc--CCcccc
Confidence 456777777763 334332 12466664 4555677766631 11234577788888777 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 286 DGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 286 ~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
+-.+.+..+..+++..| +|.+++--
T Consensus 114 gE~~~~~~~~~~~~~~~~~d~~~~d~ 139 (227)
T d2mnra1 114 GENWLGPEEMFKALSIGACRLAMPDA 139 (227)
T ss_dssp CTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred CceeEeechhhhhHhcCceeeeeccc
Confidence 99999999999999987 67777653
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=91.41 E-value=3.2 Score=34.80 Aligned_cols=190 Identities=14% Similarity=0.115 Sum_probs=101.2
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceeec-----CCCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-----SWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-----~~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+- .+-.+.++-....+-.-+.|+..++- ++.+.|.+|..+ . .+ .+.+++.- ..+.+.
T Consensus 7 ~~~~~TPf~-d~~iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~st~~ 84 (295)
T d1o5ka_ 7 GTAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEK 84 (295)
T ss_dssp EEECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHH
T ss_pred ceeeEcCcC-CCcCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecc-cccHHH
Confidence 355566653 22234444456666666778754322 234456666322 1 22 35666664 345666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+.- |.... | ..+-.++..
T Consensus 85 ai~~a~~A~~~Gad~v~v~p--P~y~~-----------~--------------------------------s~~~i~~~~ 119 (295)
T d1o5ka_ 85 TLKLVKQAEKLGANGVLVVT--PYYNK-----------P--------------------------------TQEGLYQHY 119 (295)
T ss_dssp HHHHHHHHHHHTCSEEEEEC--CCSSC-----------C--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeC--CCCCC-----------C--------------------------------CHHHHHHHH
Confidence 77888999999999998752 32100 0 000113345
Q ss_pred HHHHHhcCCCEEEec-------cCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKG-------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~-------i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.+++|+++=. ..+.+...++.+.--..+.+-...+ .......+....+... +.-.+..|.
T Consensus 120 ~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~~~ni~~iK~~~~-----~~~~~~~~~~~~~~~~-~~~~v~~g~-- 191 (295)
T d1o5ka_ 120 KYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANP-----DIDQIDRTVSLTKQAR-SDFMVWSGN-- 191 (295)
T ss_dssp HHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCC-----CHHHHHHHHHHHHHHC-TTCEEEESS--
T ss_pred HHHHhccCCCeeEEeccchhcccchhHHHHHHHhhcccccceecCCc-----chhhhhhHHHHhhhcC-Ccceecccc--
Confidence 667777888988753 2577777776654334333321111 1112222222222222 223344442
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCcc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCPL 317 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~~ 317 (323)
...+..++.+||++++.|..-+....
T Consensus 192 -~~~~~~~~~~Ga~G~i~~~~n~~p~~ 217 (295)
T d1o5ka_ 192 -DDRTFYLLCAGGDGVISVVSNVAPKQ 217 (295)
T ss_dssp -GGGHHHHHHHTCCEEEESGGGTCHHH
T ss_pred -ccchhhhhhcCCCcccccccccccch
Confidence 34467788999999999875544433
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=91.40 E-value=0.7 Score=39.63 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcC--CCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTITK--LPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~~--~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.+.++++.++ +||+.- ||.+.+||.+.+.+|||.|-+.
T Consensus 229 l~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~ 271 (311)
T d1juba_ 229 LANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIG 271 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeee
Confidence 456777777764 676544 7899999999999999999884
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=91.37 E-value=1.1 Score=37.11 Aligned_cols=90 Identities=11% Similarity=0.013 Sum_probs=60.9
Q ss_pred CHHHHHHHHHhcC--CCEEEec--cCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVKG--VLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK~--i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.|+.+|+.++ ..+.+=. ..+.++| +.+.+.+...+-= ...+..++.+.++++.+ ++||.
T Consensus 48 D~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~l~~~~--~ipia 117 (244)
T d2chra1 48 DLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIEQ--------PVGRENTQALRRLSDNN--RVAIM 117 (244)
T ss_dssp HHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEC--------CSCSSCHHHHHHHHHHC--SSEEE
T ss_pred HHHHHHHHHHhcCCCceEEEeCCCCcchHHHHHHHHHHhhhhHHHHhh--------hhhhccchhhhhhccce--eeeee
Confidence 3556788888773 4444331 2355554 4444566555421 01223577888888887 89999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
++-.+.+..++..++..| +|.|++.-..
T Consensus 118 ~~E~~~~~~~~~~~i~~~~~d~v~~d~~~ 146 (244)
T d2chra1 118 ADESLSTLASAFDLARDRSVDVFSLKLCN 146 (244)
T ss_dssp ESSSCCSHHHHHHHHTTTCCSEECCCHHH
T ss_pred ecccccccchhhhhhhcceeEEEeecccc
Confidence 999999999999999987 8888876443
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=91.04 E-value=0.64 Score=38.33 Aligned_cols=42 Identities=29% Similarity=0.297 Sum_probs=35.0
Q ss_pred cCHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..++.|+++|+.. +.++.|=|..+.+.+..+.++|||.+++.
T Consensus 154 ~~l~kI~~l~~~~~~~~I~VDGGIn~~~i~~l~~aGad~~V~G 196 (220)
T d1h1ya_ 154 EMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAG 196 (220)
T ss_dssp GGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEES
T ss_pred hhhHHHHHHHhcCCCceEEEEecCCHHHHHHHHHCCCCEEEEC
Confidence 3577888888765 57788888888899999999999999873
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=91.00 E-value=1.7 Score=35.66 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=59.4
Q ss_pred CHHHHHHHHHhc--CCCEEEe--ccCCHHHH----HHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTIT--KLPILVK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~--~~pv~vK--~i~~~e~a----~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++.+|+.+ +..+.+= ...+.++| +.+.+.|...|-= ...+..++.+.++++.+ ++||.
T Consensus 48 Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe--------P~~~~d~~~~~~L~~~~--~~pIa 117 (242)
T d1muca1 48 DLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGIDLIEQ--------PISRINRGGQVRLNQRT--PAPIM 117 (242)
T ss_dssp HHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHHTTCCCEEC--------CBCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcHHHHHHHHHHhhhhhHHHhhc--------chhhhhhhhhhhhhhhh--hheee
Confidence 355677787776 3334433 22456664 4555667665521 01123577788888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVS 309 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG 309 (323)
++..+.+..|+.+++..| +|.+++-
T Consensus 118 ~~E~~~~~~~~~~~i~~~~~d~~~~d 143 (242)
T d1muca1 118 ADESIESVEDAFSLAADGAASIFALK 143 (242)
T ss_dssp ESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred cccccccccchhhhhhcccccccccc
Confidence 999999999999999988 8888884
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.94 E-value=0.18 Score=45.22 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=49.0
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
..+.+..+.++|+|.|++...-|+. ....+.+++++..+ ++|||+ |+|.|++-+.. + .|||+|-+|
T Consensus 117 ~~~r~~~l~~aGvd~ivID~A~Gh~----~~~i~~lK~ir~~~--~~~vIa-GNVaT~e~~~~-l-~gaD~VkVG 182 (368)
T d2cu0a1 117 DIKRAIELDKAGVDVIVVDTAHAHN----LKAIKSMKEMRQKV--DADFIV-GNIANPKAVDD-L-TFADAVKVG 182 (368)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCCCC----HHHHHHHHHHHHTC--CSEEEE-EEECCHHHHTT-C-TTSSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEecCcccch----hhhhhhhhhhhhhc--ccceee-ccccCHHHHHh-h-hcCcceeec
Confidence 4566778889999999987543331 23456777877766 689887 99999987643 2 599999887
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=90.90 E-value=2.1 Score=35.13 Aligned_cols=89 Identities=10% Similarity=0.096 Sum_probs=60.6
Q ss_pred CHHHHHHHHHhcC--CCEEEe--ccCCHHHHH----HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVK--GVLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK--~i~~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++.+++.++ ..+.+= ...+.++|. .+.+.+...+-= ...+..++.+.++++.. ++||.
T Consensus 48 Di~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~iEe--------P~~~~~~~~~~~l~~~~--~ipIa 117 (243)
T d1nu5a1 48 DLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQ--------PVPRANFGALRRLTEQN--GVAIL 117 (243)
T ss_dssp HHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEEC--------CSCTTCHHHHHHHHHHC--SSEEE
T ss_pred HHHHHHHHHHHhCcccceEEECCCCccchhHHHHHHHhcchhhhhhhh--------hhhhccccccccchhcc--ccccc
Confidence 3556777777763 333332 224666654 445677666531 01123577888888887 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIM 311 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~ 311 (323)
.+--+.+..|....+..| +|.+++--.
T Consensus 118 ~gE~~~~~~~~~~~i~~~~~d~~~~d~~ 145 (243)
T d1nu5a1 118 ADESLSSLSSAFELARDHAVDAFSLKLC 145 (243)
T ss_dssp ESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred cccccccchhhhhccccccccccccccc
Confidence 999999999999999988 788888643
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=90.78 E-value=1 Score=32.78 Aligned_cols=94 Identities=13% Similarity=0.041 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHH-HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDAR-IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~-~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~ 292 (323)
.+.++.+-+.++.-+ +....+.++|. .+.+.-.|.|++.-+-. ....++++.++++.. .++|||+-.+-.+.
T Consensus 14 ~~~l~~~L~~~g~~v-~~~a~~~~~al~~~~~~~~dliilD~~mp-----~~~G~e~~~~ir~~~-~~~pvi~ls~~~~~ 86 (118)
T d1u0sy_ 14 RMMLKDIITKAGYEV-AGEATNGREAVEKYKELKPDIVTMDITMP-----EMNGIDAIKEIMKID-PNAKIIVCSAMGQQ 86 (118)
T ss_dssp HHHHHHHHHHTTCEE-EEEESSHHHHHHHHHHHCCSEEEEECSCG-----GGCHHHHHHHHHHHC-TTCCEEEEECTTCH
T ss_pred HHHHHHHHHHcCCce-EEEECCHHHHHHHHHhccCCEEEEecCCC-----CCCHHHHHHHHHHhC-CCCcEEEEEccCCH
Confidence 344555555566543 22346777765 44567789888754321 134678888887654 47999999999999
Q ss_pred HHHHHHHHcCCCEEEEccccccC
Q 020636 293 TDVFKALALGASGIFVSIMPCQC 315 (323)
Q Consensus 293 ~di~kal~lGAd~V~iG~~~~~~ 315 (323)
..+.+++.+||+.... .++-..
T Consensus 87 ~~~~~a~~~Ga~~yl~-KP~~~~ 108 (118)
T d1u0sy_ 87 AMVIEAIKAGAKDFIV-KPFQPS 108 (118)
T ss_dssp HHHHHHHHTTCCEEEE-SSCCHH
T ss_pred HHHHHHHHcCCCEEEE-CCCCHH
Confidence 9999999999998644 555433
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.40 E-value=2.6 Score=35.61 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
-|.+.+++.++.+.+.|++++.+.-.+-- -+.+
T Consensus 25 iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE-----------------------------------------------~~~L 57 (296)
T d1xxxa1 25 LDTATAARLANHLVDQGCDGLVVSGTTGE-----------------------------------------------SPTT 57 (296)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTT-----------------------------------------------TTTS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECeeccc-----------------------------------------------hhhC
Confidence 47788899999999999999986421100 0112
Q ss_pred CHH----HHHHHHHhc--CCCEEEecc-CC----HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCC
Q 020636 213 SWK----DVKWLQTIT--KLPILVKGV-LT----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (323)
Q Consensus 213 ~~~----~i~~i~~~~--~~pv~vK~i-~~----~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~ 281 (323)
+++ .++.+.+.. ..|+++... .+ .+.++.+.++|+|++.+..-..... +...-.+...++.+++ ++
T Consensus 58 s~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~-~~~~l~~~~~~v~~~~--~~ 134 (296)
T d1xxxa1 58 TDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKP-PQRGLQAHFTAVADAT--EL 134 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCC-CHHHHHHHHHHHHTTC--SS
T ss_pred CHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEEeccCCCC-CHHHHHHHHHHHHHhc--CC
Confidence 222 244444444 367776643 33 4557899999999998864321110 1111234556666655 68
Q ss_pred eEEE-----ecCCCCHHHHHHHHH
Q 020636 282 PVFL-----DGGVRRGTDVFKALA 300 (323)
Q Consensus 282 pvia-----~GGI~~~~di~kal~ 300 (323)
||+. .+|+.-..+.++.|+
T Consensus 135 pi~lYn~p~~~g~~~~~~~~~~L~ 158 (296)
T d1xxxa1 135 PMLLYDIPGRSAVPIEPDTIRALA 158 (296)
T ss_dssp CEEEEECHHHHSSCCCHHHHHHHH
T ss_pred CEEEEECccccCCCCCHHHHHHhc
Confidence 8887 457766666666665
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=90.30 E-value=0.67 Score=36.64 Aligned_cols=83 Identities=23% Similarity=0.175 Sum_probs=52.7
Q ss_pred HHHHHHhcCCCEEEecc-CCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHh---c-CCCeEEEecCCC
Q 020636 217 VKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRIPVFLDGGVR 290 (323)
Q Consensus 217 i~~i~~~~~~pv~vK~i-~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~~pvia~GGI~ 290 (323)
+...-+..+.-|+.-+. .++++ +..+.+.++|.|.+|..-+. ..+.++++.+.+ + .+++|++ ||+-
T Consensus 57 va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~-------~~~~~~~l~~~L~~~g~~~v~Viv-GG~i 128 (168)
T d7reqa2 57 IATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGG-------HLTLVPALRKELDKLGRPDILITV-GGVI 128 (168)
T ss_dssp HHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSC-------HHHHHHHHHHHHHHTTCTTSEEEE-EESC
T ss_pred HHHHHHhCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCccc-------chHHHHHHHHHHHhcCCCCeEEEE-eCCC
Confidence 33333444555655444 45555 67888999999999865432 333333333332 2 3577764 7777
Q ss_pred CHHHHHHHHHcCCCEEE
Q 020636 291 RGTDVFKALALGASGIF 307 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~ 307 (323)
-..|..+...+|.++|.
T Consensus 129 p~~d~~~l~~~Gv~~iF 145 (168)
T d7reqa2 129 PEQDFDELRKDGAVEIY 145 (168)
T ss_dssp CGGGHHHHHHHTEEEEE
T ss_pred CHHHHHHHHhCCCCEEE
Confidence 78899888899999864
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=90.18 E-value=0.25 Score=42.85 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhcCCCEEEe--ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK--~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.+.++++.++.++++. |+.+.+||.+.+.+||+.|-+.
T Consensus 229 al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~ 271 (312)
T d2b4ga1 229 ALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVG 271 (312)
T ss_dssp HHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEES
T ss_pred hhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheee
Confidence 4567888888875444433 6789999999999999999884
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.06 E-value=0.72 Score=41.61 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=65.7
Q ss_pred ceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHH
Q 020636 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (323)
Q Consensus 124 ~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (323)
+.|+.|-+.-+.+.+.++++.+++.|+++++++-.... .. ......+ ..+.-+|. .
T Consensus 268 pi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~--~~-----------~~~~~~~---------~~GGlSG~--~ 323 (409)
T d1tv5a1 268 LVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ--IN-----------DIKSFEN---------KKGGVSGA--K 323 (409)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSC--CC-----------CCGGGTT---------CCSEEEEH--H
T ss_pred ceEEEeCCCCCchhhHHHHHHHHhccccceeccccccc--cc-----------ccccccc---------cCCcccch--h
Confidence 57888876667778889999999999999987643221 10 0000000 00111110 1
Q ss_pred HhhccCCccCHHHHHHHHHhcC--CCE-EEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 204 VAGQIDRSLSWKDVKWLQTITK--LPI-LVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 204 ~~~~~~~~~~~~~i~~i~~~~~--~pv-~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
+ .....+.|+++++.++ +|| -+.||.+.+||.+.+.+||+.|-+.
T Consensus 324 l-----~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~ 371 (409)
T d1tv5a1 324 L-----KDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLY 371 (409)
T ss_dssp H-----HHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEES
T ss_pred H-----HHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCHHhhh
Confidence 1 1134677889988884 775 4558999999999999999999884
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=89.92 E-value=4.8 Score=33.72 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 236 ~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
.++|+.+.++||-+|++-. -+.++-.+|.+.+ ++|+|.-|
T Consensus 162 ~~~a~~le~AGa~~ivlE~----------Vp~~va~~It~~~--~iptIgIG 201 (260)
T d1o66a_ 162 LNDAKAHDDAGAAVVLMEC----------VLAELAKKVTETV--SCPTIGIG 201 (260)
T ss_dssp HHHHHHHHHTTCSEEEEES----------CCHHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHHHhhhhehhhhh----------ccHHHHHHHHhhh--cceeeecc
Confidence 4678999999999999854 3456667788888 89999755
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=89.73 E-value=4.9 Score=33.58 Aligned_cols=184 Identities=16% Similarity=0.203 Sum_probs=105.1
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceeec-----CCCCCCHHHH-------HhcC-C-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-----SWSTSSVEEV-------ASTG-P-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-----~~s~~~~eei-------~~~~-~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-....+-..+.|+...+- ++.+.|.+|. .+.. + .+.+++.. ..+-..
T Consensus 8 ~~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~ 86 (292)
T d1xkya1 8 ATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHA 86 (292)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHH
T ss_pred eeeeeCCcCCCcCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecC-cccHHH
Confidence 477778875443334455557777777888754433 2234555553 2222 2 35677764 345566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
+.++.+.++++|++++.+.. |..- + + +.+-.++..
T Consensus 87 ~i~~a~~a~~~Gad~ilv~p--P~~~------------~--------------~-----------------s~~~i~~~~ 121 (292)
T d1xkya1 87 SIDLTKKATEVGVDAVMLVA--PYYN------------K--------------P-----------------SQEGMYQHF 121 (292)
T ss_dssp HHHHHHHHHHTTCSEEEEEC--CCSS------------C--------------C-----------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECC--CCCC------------C--------------C-----------------CHHHHHHHH
Confidence 67888999999999998752 3210 0 0 000113345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.+.+.+++|+++=.. .+++...++.+.. ..+.+-.. ..+......+.+..+.+..++ .|+
T Consensus 122 ~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~~p-~v~giK~~--------~~~~~~~~~~~~~~~~~~~v~-~G~-- 189 (292)
T d1xkya1 122 KAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIE-NIVAIKDA--------GGDVLTMTEIIEKTADDFAVY-SGD-- 189 (292)
T ss_dssp HHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTST-TEEEEEEC--------SSCHHHHHHHHHHSCTTCEEE-ESS--
T ss_pred HHHhccCCCcEEEEeCCcccCCccCHHHHhhhccCC-CEEEEecc--------ccchhhhheeeeecCCCCEEE-ECC--
Confidence 6677778899888532 5677776665432 22222111 123344455555555455554 343
Q ss_pred CHHHHHHHHHcCCCEEEEcccccc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
...+...+.+|+++++.|..-+.
T Consensus 190 -~~~~~~~~~~G~~G~~~~~~n~~ 212 (292)
T d1xkya1 190 -DGLTLPAMAVGAKGIVSVASHVI 212 (292)
T ss_dssp -GGGHHHHHHTTCCEEEESTHHHH
T ss_pred -ccccchHHHcCCCccccchhhHH
Confidence 24467788899999999876443
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=89.66 E-value=2.4 Score=31.91 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHc--------CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc-CCCeEE
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQA--------GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVF 284 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~--------Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~~pvi 284 (323)
.+.++.+-+..+...-+-...+.++|...++. -.|.|++.-.-. ....++++.++++.-. .++|||
T Consensus 16 ~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP-----~~~G~el~~~ir~~~~~~~iPvi 90 (144)
T d1i3ca_ 16 SRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLP-----KKDGREVLAEIKQNPDLKRIPVV 90 (144)
T ss_dssp HHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCS-----SSCHHHHHHHHHHCTTTTTSCEE
T ss_pred HHHHHHHHHHcCCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECccc-----cccchHHHHHHHhCcccCCCeEE
Confidence 44455544444444444456778888776643 256666643211 1245788888876432 269999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEE
Q 020636 285 LDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~i 308 (323)
+-.+-.+..+..+++.+||+....
T Consensus 91 ~lT~~~~~~~~~~a~~~Ga~~yl~ 114 (144)
T d1i3ca_ 91 VLTTSHNEDDVIASYELHVNCYLT 114 (144)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEE
T ss_pred EEECCCCHHHHHHHHHCCCCEEEE
Confidence 999999999999999999998764
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.44 E-value=1.9 Score=31.52 Aligned_cols=98 Identities=11% Similarity=-0.018 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHH-HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~-~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+-+..+.--++....+.++|.... +...|.|.+.-+-. ....++++.++++..+...||++-.+-.+..
T Consensus 15 ~~l~~~L~~~~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP-----~~dG~e~~~~ir~~~~~~~~ii~~t~~~~~~ 89 (123)
T d1dz3a_ 15 SLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMP-----HLDGLAVLERIRAGFEHQPNVIMLTAFGQED 89 (123)
T ss_dssp HHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCS-----SSCHHHHHHHHHHHCSSCCEEEEEEETTCHH
T ss_pred HHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCC-----CCCHHHHHHHHHhcCCCCCeEEEEECcCCHH
Confidence 33444333333223455567888876654 56689888765322 1245788888887654456788888899999
Q ss_pred HHHHHHHcCCCEEEEccccccCcch
Q 020636 294 DVFKALALGASGIFVSIMPCQCPLT 318 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~~~~~~~ 318 (323)
+..+++.+||+.... .++-...+.
T Consensus 90 ~~~~a~~~Ga~~~l~-KP~~~~~L~ 113 (123)
T d1dz3a_ 90 VTKKAVELGASYFIL-KPFDMENLA 113 (123)
T ss_dssp HHHHHHHTTCEEEEE-CSSCCTTHH
T ss_pred HHHHHHHCCCCEEEE-CCCCHHHHH
Confidence 999999999998643 455433333
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=89.20 E-value=0.98 Score=38.52 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=36.5
Q ss_pred cCHHHHHHHHHhcCCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..|+.++++++.+++||+.- ||.+.+|+.+.+.+|||+|.+.
T Consensus 228 ~~l~~i~~i~~~~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig 270 (311)
T d1ep3a_ 228 VALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVG 270 (311)
T ss_dssp HHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred hhHHHHHHHhhhcceeEEEeCCcCCHHHHHHHHHcCCCEEEec
Confidence 46888999999999998754 6899999999999999999883
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=89.08 E-value=2.2 Score=31.77 Aligned_cols=86 Identities=8% Similarity=0.046 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHHH-HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~~-~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+-+..+.-+ -.+.+.++|..+. +...|.|++.-.-. ....++++..+++.. .++|||+-.|-.+..
T Consensus 14 ~~l~~~L~~~g~~v--~~a~~~~eAl~~l~~~~~dlvilD~~mp-----~~~G~e~~~~lr~~~-~~~piI~lT~~~~~~ 85 (137)
T d1ny5a1 14 GLLEEYLSMKGIKV--ESAERGKEAYKLLSEKHFNVVLLDLLLP-----DVNGLEILKWIKERS-PETEVIVITGHGTIK 85 (137)
T ss_dssp HHHHHHHHHHTCEE--EEESSHHHHHHHHHHSCCSEEEEESBCS-----SSBHHHHHHHHHHHC-TTSEEEEEEETTCHH
T ss_pred HHHHHHHHHCCCEE--EEECCHHHHHHHhhccccccchHHHhhh-----hhhHHHHHHHHHHhC-CCCCEEEEECCCCHH
Confidence 34444444445433 3467888887766 46788888764321 134578888887654 379999999999999
Q ss_pred HHHHHHHcCCCEEEE
Q 020636 294 DVFKALALGASGIFV 308 (323)
Q Consensus 294 di~kal~lGAd~V~i 308 (323)
++.+++.+||+....
T Consensus 86 ~~~~a~~~Ga~dyl~ 100 (137)
T d1ny5a1 86 TAVEAMKMGAYDFLT 100 (137)
T ss_dssp HHHHHHTTTCCEEEE
T ss_pred HHHHHHHcCCCEEEe
Confidence 999999999997654
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=88.88 E-value=2.7 Score=31.20 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHH-HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~-~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+-+..+.-.++....+.+++... .+...|.|.+.-+-. +...++++.++++.. ..+|+++-.+-.+..
T Consensus 16 ~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP-----~~~G~el~~~ir~~~-~~~~vivlt~~~~~~ 89 (138)
T d1a04a2 16 TGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMP-----GMNGLETLDKLREKS-LSGRIVVFSVSNHEE 89 (138)
T ss_dssp HHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTST-----TSCHHHHHHHHHHSC-CCSEEEEEECCCCHH
T ss_pred HHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEecCCC-----CCCHHHHHHHHHhhC-CCCCEEEEEEECCHH
Confidence 3444444443332455566777776554 567799988864321 134688888887654 378888888899999
Q ss_pred HHHHHHHcCCCEEEE
Q 020636 294 DVFKALALGASGIFV 308 (323)
Q Consensus 294 di~kal~lGAd~V~i 308 (323)
++.+++.+||++...
T Consensus 90 ~~~~a~~~Ga~~yl~ 104 (138)
T d1a04a2 90 DVVTALKRGADGYLL 104 (138)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999997653
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=88.87 E-value=3.9 Score=34.03 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=28.4
Q ss_pred HHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 020636 268 MALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFVSI 310 (323)
Q Consensus 268 ~~l~~i~~~~~-~~~pvia~GGI~~~~di~kal~lGAd~V~iG~ 310 (323)
+.+.++.+.+. ..+++-.- ..+++++.+.+..|++.+.+|+
T Consensus 194 ~ai~~v~~~~~~~gk~~g~~--~~~~~~~~~~~~~G~~~i~~g~ 235 (253)
T d1dxea_ 194 KAIQHIFNRASAHGKPSGIL--APVEADARRYLEWGATFVAVGS 235 (253)
T ss_dssp HHHHHHHHHHHHTTCCEEEE--CCSHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEe--cCCHHHHHHHHHcCCCEEEehH
Confidence 45555555442 24555332 3589999999999999999986
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.87 E-value=1.6 Score=37.94 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccC
Q 020636 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (323)
+.+...++++.+++.|.+.+.++...... ..|. .. .+ ......
T Consensus 226 ~~~~~~~~~~~l~~~g~d~~~~~~g~~~~-----------~~~~---------~~-~~----------------~~~~~~ 268 (330)
T d1ps9a1 226 TFAETVELAQAIEAAGATIINTGIGWHEA-----------RIPT---------IA-TP----------------VPRGAF 268 (330)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECBTTC-----------SSCS---------SS-TT----------------SCTTTT
T ss_pred CHHHHHHHHHHHHHhhhhhhhcccccccc-----------cccc---------cC-CC----------------CcchhH
Confidence 45667788888899999988877643221 0010 00 00 001122
Q ss_pred HHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
....+++|+.+++||++-| +.+++.|+.+++.| +|.|.+
T Consensus 269 ~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~ 309 (330)
T d1ps9a1 269 SWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSM 309 (330)
T ss_dssp HHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHh
Confidence 3456788898999998776 57899999999998 998876
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=88.87 E-value=5.7 Score=33.20 Aligned_cols=190 Identities=14% Similarity=0.150 Sum_probs=103.9
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCcee--e---cCCCCCCHHHHHh-------c-CC-CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--L---SSWSTSSVEEVAS-------T-GP-GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~--v---s~~s~~~~eei~~-------~-~~-~~~~~QLy~~~d~~~ 137 (323)
.|.++.|+.-.+-.+.++-...++-+.+.|+... . |++.+.+.+|..+ . .+ .+.++..- ..+-+.
T Consensus 6 ~~a~~TPf~~d~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~-~~s~~~ 84 (292)
T d2a6na1 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAE 84 (292)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred eeeEECCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecc-cchHHH
Confidence 3566677654333344444566777777776543 2 2333456666322 2 22 24455443 344555
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHH
Q 020636 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 217 (323)
..++.+.++++|++++.+.. |.... .+ .. -..+..
T Consensus 85 ~i~~~~~a~~~Gad~~~~~p--P~~~~--------------~~----------------~~-------------~i~~~f 119 (292)
T d2a6na1 85 AISLTQRFNDSGIVGCLTVT--PYYNR--------------PS----------------QE-------------GLYQHF 119 (292)
T ss_dssp HHHHHHTTTTSSCCEEEEEC--CCSSC--------------CC----------------HH-------------HHHHHH
T ss_pred HHHHhccHHhcCCcceeccC--CCCCC--------------CC----------------HH-------------HHHHHH
Confidence 66777788889999988752 33100 00 00 113345
Q ss_pred HHHHHhcCCCEEEecc-------CCHHHHHHHHHcCCCEEE-EcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 020636 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGII-VSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (323)
Q Consensus 218 ~~i~~~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~-vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI 289 (323)
+.+.+.+++|+++=.. .+++..+++.+. +.|+ +-... .+......+.+..+++.. +..|
T Consensus 120 ~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~~--pnv~giK~~~--------~~~~~~~~~~~~~~~~~~-~~~g-- 186 (292)
T d2a6na1 120 KAIAEHTDLPQILYNVPSATGCDLLPETVGRLAKV--KNIIGIKEAT--------GNLTRVNQIKELVSDDFV-LLSG-- 186 (292)
T ss_dssp HHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHHTS--TTEEEEEECS--------CCTTHHHHHHTTSCTTSE-EEEC--
T ss_pred HHHhhccCCcEEEEEeccccCCccCHHHHHHHhcC--CCEEEEEecc--------CcchhhhhhhhhcCCccE-Eeec--
Confidence 6677778899887742 577777777654 2332 21111 112222333334433443 3444
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccCcchhhh
Q 020636 290 RRGTDVFKALALGASGIFVSIMPCQCPLTEKI 321 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~~~~~~~~~~ 321 (323)
+.......+.+||++.+.|..-+....+.++
T Consensus 187 -~~~~~~~~~~~G~~G~i~~~~~~~p~~~~~i 217 (292)
T d2a6na1 187 -DDASALDFMQLGGHGVISVTANVAARDMAQM 217 (292)
T ss_dssp -CGGGHHHHHHTTCCEEEESGGGTCHHHHHHH
T ss_pred -chhhhhhHhhCCceEEEeecchhhhhchhhh
Confidence 3456677888999999998877665555544
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.44 E-value=0.81 Score=40.07 Aligned_cols=41 Identities=27% Similarity=0.208 Sum_probs=34.7
Q ss_pred cCHHHHHHHHHhcCCCEEEec-cCCHHHHHHHHHcC-CCEEEE
Q 020636 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK~-i~~~e~a~~~~~~G-ad~i~v 252 (323)
..++..+.+|+.+++||+.-| +.++++|+.+++.| ||.|.+
T Consensus 278 ~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~ 320 (340)
T d1djqa1 278 HTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGC 320 (340)
T ss_dssp TTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEE
T ss_pred ccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhh
Confidence 456678889999999998664 67899999999998 999876
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.38 E-value=4.4 Score=34.52 Aligned_cols=69 Identities=12% Similarity=0.075 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHcCCceee-----cCCCCCCHHHHHh--------cC---C--CceeEEeeecCChHHHHHHHHHHHHc
Q 020636 87 PEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS--------TG---P--GIRFFQLYVYKDRNVVAQLVRRAERA 148 (323)
Q Consensus 87 ~~~e~~~a~aa~~~G~~~~v-----s~~s~~~~eei~~--------~~---~--~~~~~QLy~~~d~~~~~~~~~~a~~~ 148 (323)
|+.-..++..+..-|+-++= .+..-+++||..+ +. . ..+.+.| ..+.+.+.+..+.++++
T Consensus 34 ~~~~a~~~~~~~~GGvD~IKDDe~l~~~~~~p~~eRv~~~~~a~~~a~~~tG~~~~Ya~Ni--t~~~~~m~~ra~~~~~~ 111 (291)
T d2d69a1 34 VEEYAEIAYELWSGGIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINI--TGPVNIMEKRAEMVANE 111 (291)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCTTCSCBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBC--CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCceecCCccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeeEEEEec--cCCHHHHHHHHHHHHHc
Confidence 33334678888888988874 3334455655321 11 1 2233333 45677777788888899
Q ss_pred CCcEEEEec
Q 020636 149 GFKAIALTV 157 (323)
Q Consensus 149 G~~al~itv 157 (323)
|..++.|++
T Consensus 112 G~~~vmi~~ 120 (291)
T d2d69a1 112 GGQYVMIDI 120 (291)
T ss_dssp TCCEEEEEH
T ss_pred CCCEEEecc
Confidence 999998775
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=88.24 E-value=0.93 Score=38.22 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 234 ~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
.++.++.+..+.||++|.|-.-.. .-..+++.|..+++.+ ++||+.-==|-+..++.++..+|||+|.+=-.++
T Consensus 68 ~~p~~~a~~~~~gA~aiSVLTe~~----~F~Gs~~~l~~v~~~~--~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L 141 (254)
T d1piia2 68 FDPARIAAIYKHYASAISVLTDEK----YFQGSFNFLPIVSQIA--PQPILCKDFIIDPYQIYLARYYQADACLLMLSVL 141 (254)
T ss_dssp CCHHHHHHHHTTTCSEEEEECCST----TTCCCTTHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTC
T ss_pred chhHHHHHHHHhccCceEEecccc----cCCCCHHHHHHHHhcc--ccccchhcccCcHHHHHHHHhhccchhhhhHhhh
Confidence 456666677789999998853110 0112456677778777 7999999899999999999999999998755554
Q ss_pred cC
Q 020636 314 QC 315 (323)
Q Consensus 314 ~~ 315 (323)
..
T Consensus 142 ~~ 143 (254)
T d1piia2 142 DD 143 (254)
T ss_dssp CH
T ss_pred cc
Confidence 43
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.14 E-value=1.2 Score=37.30 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=55.1
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPC 313 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~ 313 (323)
++.+.....+.||++|.|-.- ...-..+++.|..+++.+ ++||+.-==|-+..++.++..+|||+|.+=-.++
T Consensus 64 d~~~~a~~~~~gA~aiSVLTd----~~~F~Gs~~dl~~v~~~~--~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L 136 (247)
T d1a53a_ 64 DPIEYSKFMERYAVGLSILTE----EKYFNGSYETLRKIASSV--SIPILMKDFIVKESQIDDAYNLGADTVLLIVKIL 136 (247)
T ss_dssp CHHHHHHHHTTTCSEEEEECC----CTTTCCCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGS
T ss_pred CHHHHHHHHHhCCCeEEEecC----ccccccchHHHHHHHhcc--ccceeecccccChHHHHHHHHhhcchhhhhhhhc
Confidence 454544567899999987321 111123678888888888 8999999999999999999999999998855444
|
| >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=88.04 E-value=5.9 Score=33.51 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
|..+....+..++++ +-.+.+.+.+..+.+.|++.+.+... .....++|.++.+. ..|||.+-|-.+..
T Consensus 90 ~~~l~~~~k~~gi~~-~~s~fd~~s~~~l~~l~~~~iKIaS~-------d~~n~~Li~~i~k~---~kpviistG~~~~~ 158 (295)
T d1vlia2 90 ILPLLDYCREKQVIF-LSTVCDEGSADLLQSTSPSAFKIASY-------EINHLPLLKYVARL---NRPMIFSTAGAEIS 158 (295)
T ss_dssp HHHHHHHHHHTTCEE-ECBCCSHHHHHHHHTTCCSCEEECGG-------GTTCHHHHHHHHTT---CSCEEEECTTCCHH
T ss_pred hhhHHHHhhhcccce-eeecccceeeeeecccCcceeEeccc-------ccccHHHHHHHHhc---CCchheechhhhhh
Confidence 555555555556543 34567888999999999999988431 23456777776543 68999999999999
Q ss_pred HHHHHHH
Q 020636 294 DVFKALA 300 (323)
Q Consensus 294 di~kal~ 300 (323)
++.+++.
T Consensus 159 ei~~~~~ 165 (295)
T d1vlia2 159 DVHEAWR 165 (295)
T ss_dssp HHHHHHH
T ss_pred hHHHHHh
Confidence 9987775
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=87.88 E-value=1.1 Score=38.41 Aligned_cols=44 Identities=14% Similarity=0.399 Sum_probs=38.1
Q ss_pred CCccCHHHHHHHHHhcCCCEEEecc--CCHHHHHHHHHcCCCEEEE
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i--~~~e~a~~~~~~Gad~i~v 252 (323)
.|.++++.+++|++.+++|+++.|. .+.++.+++.+.|+.-|=+
T Consensus 185 ~p~l~~~~L~~i~~~~~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi 230 (284)
T d1gvfa_ 185 TPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNV 230 (284)
T ss_dssp CCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTTEEEEEE
T ss_pred CCccccchhhhhhccccCCeEeeCCCCCCHHHHHHHHHcCeEEEEe
Confidence 4667899999999999999999987 4678899999999877766
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=87.83 E-value=1.7 Score=36.42 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHcCCCEEEEcC-CCCCCCCCCcchHHHHHHHHHHhcC-CC-eEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 020636 233 VLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQG-RI-PVFLDGGVRRGTDVFKALALGASGIFVS 309 (323)
Q Consensus 233 i~~~e~a~~~~~~Gad~i~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~-~~-pvia~GGI~~~~di~kal~lGAd~V~iG 309 (323)
..++..++.+..+|.|+|++.. ||. -+++.+..+..++.. .+ |++-.- -.+...+.++|.+||++|++=
T Consensus 24 ~~~p~~~ei~a~~G~Dfv~iD~EHg~-------~~~~~~~~~i~a~~~~g~~~~VRvp-~~~~~~i~~~LD~Ga~GIivP 95 (253)
T d1dxea_ 24 LSNPISTEVLGLAGFDWLVLDGEHAP-------NDISTFIPQLMALKGSASAPVVRVP-TNEPVIIKRLLDIGFYNFLIP 95 (253)
T ss_dssp SCSHHHHHHHTTSCCSEEEEESSSSS-------CCHHHHHHHHHHTTTCSSEEEEECS-SSCHHHHHHHHHTTCCEEEES
T ss_pred CCCHHHHHHHHcCCCCEEEEecccCC-------CChhHHHHHHHHHhccCCCceecCC-CCCHHHHHHHHhcCccEEEec
Confidence 4688889999999999999964 543 344444555554422 34 444333 478999999999999999873
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.74 E-value=3.7 Score=29.70 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHH-HHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~-~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.+..+-+.++. -+....+.++|.. +.+.-.|.|++.-... ....++++..+++.- ++|||+-.|-.+..
T Consensus 16 ~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~dlii~D~~mp-----~~~G~~~~~~~r~~~--~~pii~lt~~~~~~ 86 (121)
T d1xhfa1 16 NTLKSIFEAEGY--DVFEATDGAEMHQILSEYDINLVIMDINLP-----GKNGLLLARELREQA--NVALMFLTGRDNEV 86 (121)
T ss_dssp HHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEECSSCS-----SSCHHHHHHHHHHHC--CCEEEEEESCCSHH
T ss_pred HHHHHHHHHCCC--EEEEECChHHHHHHHHhcCCCEEEeecccC-----CccCcHHHHHHHhcC--CCcEEEEECCCCHH
Confidence 344444444554 3445678888754 4567788887754221 123467777776653 79999999999999
Q ss_pred HHHHHHHcCCCEEEE
Q 020636 294 DVFKALALGASGIFV 308 (323)
Q Consensus 294 di~kal~lGAd~V~i 308 (323)
+..+++.+||+....
T Consensus 87 ~~~~a~~~Ga~dyl~ 101 (121)
T d1xhfa1 87 DKILGLEIGADDYIT 101 (121)
T ss_dssp HHHHHHHHTCSEEEE
T ss_pred HHHHHHHcCCCEEEe
Confidence 999999999998643
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=87.64 E-value=2.2 Score=36.68 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=46.8
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcC-CCCCCCCCCcchHHHHHHHH---HHhc-CCC-eEEEecCCCCHHHHHHHHHcCCCE
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVV---KATQ-GRI-PVFLDGGVRRGTDVFKALALGASG 305 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~-~gg~~~~~~~~~~~~l~~i~---~~~~-~~~-pvia~GGI~~~~di~kal~lGAd~ 305 (323)
++.++..++.+..+|.|+|++.. ||. .+++.+..+. +... +.+ |++--. -.+...+.++|.+||++
T Consensus 48 ~~~s~~~~e~~a~~g~D~v~iD~EHg~-------~~~~~~~~~i~a~~~~~~~~~~~iVRvp-~~~~~~I~~~LD~Ga~G 119 (299)
T d1izca_ 48 GIPSTFVTKVLAATKPDFVWIDVEHGM-------FNRLELHDAIHAAQHHSEGRSLVIVRVP-KHDEVSLSTALDAGAAG 119 (299)
T ss_dssp CSCCHHHHHHHHHTCCSEEEEETTTSC-------CCHHHHHHHHHHHHHHTTTCSEEEEECC-TTCHHHHHHHHHHTCSE
T ss_pred cCCCHHHHHHHHcCCCCEEEEcCCCCC-------CCHHHHHHHHHHHHHhCCCCCCeEEeCC-CCChHHHHHHHHhCcCe
Confidence 45789999999999999999965 443 2333333322 2221 233 444443 35788899999999999
Q ss_pred EEE
Q 020636 306 IFV 308 (323)
Q Consensus 306 V~i 308 (323)
|++
T Consensus 120 Iiv 122 (299)
T d1izca_ 120 IVI 122 (299)
T ss_dssp EEE
T ss_pred eec
Confidence 998
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=87.18 E-value=7.4 Score=32.55 Aligned_cols=143 Identities=11% Similarity=0.062 Sum_probs=83.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCc
Q 020636 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (323)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
.+|.+...++++.|.++|++++=...-. ..++- .+.... ..... ......++.. ...
T Consensus 30 ~Gd~~~a~~lI~~a~~sGadaVKfQ~~~------~~~~~----~~~~~~------~~~~~----~~~~~~~~~~---~~e 86 (280)
T d2zdra2 30 EGSLKTAFEMVDAAYNAGAEVVKHQTHI------VEDEM----SDEAKQ------VIPGN----ADVSIYEIME---RCA 86 (280)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEEECC------HHHHC----CGGGGG------CCCTT----CSSCHHHHHH---HHC
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEecCcc------cchhc----cccccc------ccccc----cccccccccc---ccc
Confidence 4678888999999999999987654311 11110 000000 00000 0000011111 112
Q ss_pred cCHH---HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 020636 212 LSWK---DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (323)
Q Consensus 212 ~~~~---~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GG 288 (323)
++.+ .+....+..+++++ --+.+.+.+..+.+.|++.+.+... ....+.+|..+.+ . +.|||.+-|
T Consensus 87 l~~~~~~~l~~~~k~~~i~~~-~s~fd~~s~~~~~~~~~~~~KIaS~-------d~~n~~Li~~i~k-~--~kpiiiStG 155 (280)
T d2zdra2 87 LNEEDEIKLKEYVESKGMIFI-STPFSRAAALRLQRMDIPAYKIGSG-------ECNNYPLIKLVAS-F--GKPIILSTG 155 (280)
T ss_dssp CCHHHHHHHHHHHHHTTCEEE-EEECSHHHHHHHHHHTCSCEEECGG-------GTTCHHHHHHHHT-T--CSCEEEECT
T ss_pred ccchhhHHHHHHHHhcCCccc-cccchhhcccccccccccceeccch-------hccccHhhhhhhh-c--cCceeeccc
Confidence 3333 34444444455443 3457788899999999999998431 1235667777654 2 689999999
Q ss_pred CCCHHHHHHHHH----cCCCEEEE
Q 020636 289 VRRGTDVFKALA----LGASGIFV 308 (323)
Q Consensus 289 I~~~~di~kal~----lGAd~V~i 308 (323)
-.+-.++.+++. .|.+.+.+
T Consensus 156 ~s~~~EI~~av~~~~~~~~~~~ll 179 (280)
T d2zdra2 156 MNSIESIKKSVEIIREAGVPYALL 179 (280)
T ss_dssp TCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccchhHhhhhhhhhhhccccceEE
Confidence 999999999887 37776555
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=87.10 E-value=6.3 Score=31.68 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=80.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++++.+.|++++=+.++.+ +...
T Consensus 14 ~~pe~~~~~a~~~~~~G~~~~Kikig~~------------------------------------------------~~~~ 45 (234)
T d1jpma1 14 NSPEEMAADAENYLKQGFQTLKIKVGKD------------------------------------------------DIAT 45 (234)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECSSS------------------------------------------------CHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCC------------------------------------------------CHHH
Confidence 4677787888888888999886654321 1112
Q ss_pred CHHHHHHHHHhcC--CCEEEe--ccCCHHHHHHHH----HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVK--GVLTAEDARIAV----QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK--~i~~~e~a~~~~----~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++.+|+.++ ..+.+= ...+.++|.... +.+.+...+-- ...+.+++.+.++++.. ++||.
T Consensus 46 d~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~~~~le~~~~~i~~~Ee------P~~~~d~~~~~~l~~~~--~~pia 117 (234)
T d1jpma1 46 DIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQ------PVHKDDLAGLKKVTDAT--DTPIM 117 (234)
T ss_dssp HHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEEC------CSCTTCHHHHHHHHHHC--SSCEE
T ss_pred HHHHHHHHHHHcCchhhhhhhcccccchHHHHHHHHHHHhccCceeeecC------CccccCHHHHHHhhccc--cceee
Confidence 3456777777663 333322 225666654443 44554433311 11123577788888877 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcccc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSIMP 312 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~~~ 312 (323)
.+..+.+..+..+.+..| +|.+++--..
T Consensus 118 ~gE~~~~~~~~~~~i~~~~~d~v~~d~~~ 146 (234)
T d1jpma1 118 ADESVFTPRQAFEVLQTRSADLINIKLMK 146 (234)
T ss_dssp ESTTCSSHHHHHHHHHTTCCSEEEECHHH
T ss_pred cccccccchhhhhhhccCCcCeEEEeeec
Confidence 999999999999999987 8999886443
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.92 E-value=2.7 Score=36.81 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=61.2
Q ss_pred ceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHH
Q 020636 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (323)
Q Consensus 124 ~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (323)
|.++.+.+..+...+.++++.+.++|++++++. ++.. +.+ .+..... .. ..+..++..
T Consensus 222 Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~-nt~~-~~~-~~~~~~~----------------~~-~~gg~sG~~-- 279 (367)
T d1d3ga_ 222 AVLVKIAPDLTSQDKEDIASVVKELGIDGLIVT-NTTV-SRP-AGLQGAL----------------RS-ETGGLSGKP-- 279 (367)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHHHTCCEEEEC-CCBS-CCC-TTCCCTT----------------TT-SSSEEEEGG--
T ss_pred ccccccCcccchhhhhhhHHHHHhhhhheeecc-cccc-ccc-ccccccc----------------cc-ccccccccc--
Confidence 567777666667777788888889999988764 3321 110 0000000 00 000001100
Q ss_pred HhhccCCccCHHHHHHHHHhc--CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 204 VAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 204 ~~~~~~~~~~~~~i~~i~~~~--~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
-.......++++++.. ++||+ +.||.+.+||...+.+|||.|-+.
T Consensus 280 -----~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~ 327 (367)
T d1d3ga_ 280 -----LRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLY 327 (367)
T ss_dssp -----GHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred -----chhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhh
Confidence 0112355677777765 47864 447899999999999999999884
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=86.87 E-value=3.1 Score=33.17 Aligned_cols=78 Identities=15% Similarity=-0.026 Sum_probs=51.2
Q ss_pred Ee--ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCCCEE
Q 020636 230 VK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGI 306 (323)
Q Consensus 230 vK--~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-lGAd~V 306 (323)
+| |+.+.+||+.+.++|+|++-+--+... .+.-+.+...++.+.++..+..++.=-=.+.+.+.+.+. ++.|.|
T Consensus 3 iKICGit~~ed~~~~~~~gad~iGfif~~~S---pR~vs~~~a~~i~~~~~~~~~~V~Vf~~~~~~~i~~~~~~~~~d~v 79 (200)
T d1v5xa_ 3 VKICGITRLEDALLAEALGAFALGFVLAPGS---RRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVA 79 (200)
T ss_dssp EEECCCCCHHHHHHHHHHTCSEEEEECCTTC---TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEE
T ss_pred EEEcCCCcHHHHHHHHhCCCCEEEEEcCCCC---CCCcCHHHHHHHHHhhcCceeeeeeeeechhhhhhhhhcccccccc
Confidence 56 568999999999999999976433211 112245566677777654333333223346788888776 799999
Q ss_pred EEcc
Q 020636 307 FVSI 310 (323)
Q Consensus 307 ~iG~ 310 (323)
++-.
T Consensus 80 QlHg 83 (200)
T d1v5xa_ 80 QLHG 83 (200)
T ss_dssp EECS
T ss_pred cccc
Confidence 9853
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=86.83 E-value=3.3 Score=30.83 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHc--------CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc-CCCeEE
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQA--------GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVF 284 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~--------Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~~pvi 284 (323)
.+.++..-+..+...-+-.+.+.++|...++. ..|.|.+.-+-. ....++++.++++.-. .++|||
T Consensus 15 ~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdlillD~~mP-----~~dG~el~~~ir~~~~~~~iPvI 89 (140)
T d1k68a_ 15 IRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLDLNLP-----KKDGREVLAEIKSDPTLKRIPVV 89 (140)
T ss_dssp HHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCS-----SSCHHHHHHHHHHSTTGGGSCEE
T ss_pred HHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHhHHhhccCCCCEEEEeeccc-----cccChHHHHHHHhCcccCCCcEE
Confidence 34454444444444445557788888776642 246666643221 1245788888876321 268999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEE
Q 020636 285 LDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGAd~V~i 308 (323)
+-.+-.+..+..+++.+||+....
T Consensus 90 ~ls~~~~~~~~~~a~~~Ga~~yl~ 113 (140)
T d1k68a_ 90 VLSTSINEDDIFHSYDLHVNCYIT 113 (140)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEE
T ss_pred EEeCCCCHHHHHHHHHCCCCEEEE
Confidence 999999999999999999997643
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.50 E-value=3.1 Score=33.84 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=30.5
Q ss_pred CHHHHHHHHHh-----cCCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTI-----TKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~-----~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.++.++++++. .++++.+=|..+.+.+..+.++|||.+++.
T Consensus 151 ~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~~i~~l~~aGad~~V~G 196 (217)
T d2flia1 151 CLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAG 196 (217)
T ss_dssp GHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEES
T ss_pred hHHHHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 45555555543 246677777778889999999999999873
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=86.29 E-value=8.2 Score=32.21 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~G 287 (323)
++|+.+.++||.+|++-. .+.++-.+|.+.+ ++|+|.-|
T Consensus 163 ~~a~~le~AGaf~ivlE~----------vp~~va~~It~~~--~IPtIGIG 201 (262)
T d1m3ua_ 163 SDALALEAAGAQLLVLEC----------VPVELAKRITEAL--AIPVIGIG 201 (262)
T ss_dssp HHHHHHHHHTCCEEEEES----------CCHHHHHHHHHHC--SSCEEEES
T ss_pred HHHHHHHhhcceEEEEec----------ccHHHHHHHHhhh--cceeEeec
Confidence 567899999999999854 3456667788888 89999755
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.20 E-value=2.5 Score=38.03 Aligned_cols=85 Identities=24% Similarity=0.227 Sum_probs=54.6
Q ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCC---------CCCCCCcch----HHHHHHHHHHhc-------------
Q 020636 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA---------RQLDYVPAT----IMALEEVVKATQ------------- 278 (323)
Q Consensus 225 ~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg---------~~~~~~~~~----~~~l~~i~~~~~------------- 278 (323)
+-++..=|+.+.-.|..+.++|.++|.+|+.+- ...|.+.-+ .+.+..|...+.
T Consensus 63 ~~~v~~~Ga~d~~~A~~~~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~~~~~~~~~~ 142 (418)
T d1f61a_ 63 LEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTS 142 (418)
T ss_dssp SSCEEEEBCCSHHHHHHHHHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCEEecccCCHHHHHHHHHhCCCEEEechHhhhcccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 346777789999999999999999999987421 012333211 233444432220
Q ss_pred ---CCCeEEEec--CCCCHHHHHH----HHHcCCCEEEEc
Q 020636 279 ---GRIPVFLDG--GVRRGTDVFK----ALALGASGIFVS 309 (323)
Q Consensus 279 ---~~~pvia~G--GI~~~~di~k----al~lGAd~V~iG 309 (323)
-.+|||+|+ |..+...+.+ +..+||.+|.|=
T Consensus 143 ~~~~~~PIIaDaDtGfG~~~nv~rtvk~~i~AGaAgihiE 182 (418)
T d1f61a_ 143 VENWLAPIVADGEAGFGGALNVYELQKALIAAGVAGSHWE 182 (418)
T ss_dssp CSCSSCCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cccccCCeEEecccccccHHHHHHHHHHHHHhCCcEEEEe
Confidence 148999987 5566555543 334799999884
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=86.00 E-value=0.94 Score=36.59 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=37.6
Q ss_pred ccCHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcC
Q 020636 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 254 (323)
Q Consensus 211 ~~~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~ 254 (323)
...|+.++++.+..++|++.=|..+.+++..+.++|+++|.+..
T Consensus 139 ~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~~~Ga~gvAvis 182 (206)
T d1xi3a_ 139 VIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVIS 182 (206)
T ss_dssp CCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESH
T ss_pred cccHHHHHHHHHhcCCCEEEECCCCHHHHHHHHHhCCCEEEEhH
Confidence 35688999999999999877777788899999999999998853
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=85.85 E-value=4.6 Score=32.96 Aligned_cols=120 Identities=9% Similarity=0.016 Sum_probs=75.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.+++..+.||+++=+.++.. +.+.
T Consensus 19 ~~~~~~~~~~~~~~~~Gf~~~Kikvg~~------------------------------------------------~~~~ 50 (247)
T d1tzza1 19 KGLSMLRGEMRGYLDRGYNVVKMKIGGA------------------------------------------------PIEE 50 (247)
T ss_dssp -CHHHHHHHHHHHHTTTCSEEEEECSSS------------------------------------------------CHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCC------------------------------------------------CHHH
Confidence 4677777888888888999887654321 0112
Q ss_pred CHHHHHHHHHhcC--CCEEEe--ccCCHHHHH----HHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVK--GVLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK--~i~~~e~a~----~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.|+.+|+.++ ..|.+= ...+.++|. .+.+.+...+-= . ..+..++.+.++++.+ ++||.
T Consensus 51 di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai~~~~~l~~~~i~wiEe-------P-~~~~d~~~~~~l~~~~--~ipia 120 (247)
T d1tzza1 51 DRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYEE-------V-GDPLDYALQAALAEFY--PGPMA 120 (247)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEEC-------C-SCTTCHHHHHHHTTTC--CSCEE
T ss_pred HHHHHHHHHHhccCCceEEecccccccchhHHHHHhhcchhhhhhhcc-------c-cccccchhhhhhhhcc--ccccc
Confidence 3456777777763 333332 124566654 334455544421 0 1123466777777666 79999
Q ss_pred EecCCCCHHHHHHHHHcCC-----CEEEEcc
Q 020636 285 LDGGVRRGTDVFKALALGA-----SGIFVSI 310 (323)
Q Consensus 285 a~GGI~~~~di~kal~lGA-----d~V~iG~ 310 (323)
++-.+.+..|...++..|| |.+++.-
T Consensus 121 ~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~ 151 (247)
T d1tzza1 121 TGENLFSHQDARNLLRYGGMRPDRDWLQFDC 151 (247)
T ss_dssp ECTTCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred cchhhhhhHHHHHHHHccCCcCcceeEeecc
Confidence 9999999999999999886 6777643
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=85.53 E-value=3.9 Score=33.21 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHcCCc-EEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 134 DRNVVAQLVRRAERAGFK-AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 134 d~~~~~~~~~~a~~~G~~-al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
+.....+.++.+++.|++ ++.++.++|..-..+. +... .+..-.+.....|- +.+.--+.
T Consensus 96 ~~~~~~~~i~~i~~~g~~~Gial~p~t~~~~~~~~-l~~~-----~~d~vlim~V~pG~-------------~GQ~f~~~ 156 (221)
T d1tqxa_ 96 DTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPI-LDTN-----LINTVLVMTVEPGF-------------GGQSFMHD 156 (221)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHH-HTTT-----CCSEEEEESSCTTC-------------SSCCCCGG
T ss_pred ccchhhHHHHHHHhcCCeEEEeeccccccccchhh-cccc-----cccEEEEEeecccc-------------cccccCcc
Confidence 344455667788888987 6678877776322111 1000 01111111111110 00111224
Q ss_pred CHHHHHHHHHhc-CCCEEEeccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.++.|+++|+.. +..+.|=|..+.+.+..+.++|||.+++.
T Consensus 157 ~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~~aGad~iV~G 198 (221)
T d1tqxa_ 157 MMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAG 198 (221)
T ss_dssp GHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred hhHHHHHHHHhcCCcceEEEcccCHHhHHHHHHcCCCEEEEC
Confidence 577888888875 46677778889999999999999999873
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=85.52 E-value=0.5 Score=39.07 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH----------HHHHHHcCCCEE
Q 020636 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD----------VFKALALGASGI 306 (323)
Q Consensus 237 e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d----------i~kal~lGAd~V 306 (323)
+.+..+.+.|+++++.+. .. +..+.+..+ .-.++.+.||+-..+ ..+|+..|||.+
T Consensus 142 ~~a~~~~~~~~~~~~~~~----------~~---~~~~~~~~~-~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~i 207 (231)
T d1eixa_ 142 RLAALTQKCGLDGVVCSA----------QE---AVRFKQVFG-QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYM 207 (231)
T ss_dssp HHHHHHHHTTCSEEECCG----------GG---HHHHHHHHC-SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEE
T ss_pred HHHHHHHHhccccccccc----------hh---hhhhhhhcC-CccceecCCcccCCCCccCccccCCHHHHHHcCCCEE
Confidence 346777889999887643 12 223333332 456888889875321 456788999999
Q ss_pred EEccccccCcchh
Q 020636 307 FVSIMPCQCPLTE 319 (323)
Q Consensus 307 ~iG~~~~~~~~~~ 319 (323)
.|||+....++-.
T Consensus 208 IVGR~It~a~dP~ 220 (231)
T d1eixa_ 208 VIGRPVTQSVDPA 220 (231)
T ss_dssp EECHHHHTSSSHH
T ss_pred EECCcccCCCCHH
Confidence 9999998766543
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.45 E-value=2.1 Score=37.00 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=61.1
Q ss_pred ceeEEeeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHH
Q 020636 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (323)
Q Consensus 124 ~~~~QLy~~~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (323)
|.++.|.+..+.+.+.+.++.+.+.|+.++... ++.. + +..+. .. ... ...+- -.+..+
T Consensus 213 Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~i-nt~~-~-~~~~~--~~------~~~----~~~GG---lSG~~i--- 271 (336)
T d1f76a_ 213 PIAVKIAPDLSEEELIQVADSLVRHNIDGVIAT-NTTL-D-RSLVQ--GM------KNC----DQTGG---LSGRPL--- 271 (336)
T ss_dssp CEEEECCSCCCHHHHHHHHHHHHHTTCSEEEEC-CCBC-C-CTTST--TS------TTT----TCSSE---EEEGGG---
T ss_pred CcccccchhhhhhhhhhhHHHHHhcCccchhhh-hhhh-c-ccccc--cc------ccc----ccccc---cccchh---
Confidence 567777766666777778888888888887643 3211 1 00000 00 000 00000 011111
Q ss_pred HhhccCCccCHHHHHHHHHhc--CCCEE-EeccCCHHHHHHHHHcCCCEEEEc
Q 020636 204 VAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 204 ~~~~~~~~~~~~~i~~i~~~~--~~pv~-vK~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.....+.++++++.+ ++|++ +.||.+.+||...+.+||+.|-+.
T Consensus 272 ------~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~ 318 (336)
T d1f76a_ 272 ------QLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY 318 (336)
T ss_dssp ------HHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred ------HHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHH
Confidence 012456788888877 57764 557899999999999999999884
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=85.31 E-value=1.4 Score=36.19 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
.+..+.+..+.++++-. +...+.+.|+|+|-+... + .+. .++++..+ +. + ..+..++.+++
T Consensus 68 ~l~~lc~~~~~~liInd-----~~~lA~~~~adGvHl~~~-----d---~~~---~~~r~~~~-~~-i-ig~S~h~~~e~ 128 (226)
T d2tpsa_ 68 KAQAACREAGVPFIVND-----DVELALNLKADGIHIGQE-----D---ANA---KEVRAAIG-DM-I-LGVSAHTMSEV 128 (226)
T ss_dssp HHHHHHHHHTCCEEEES-----CHHHHHHHTCSEEEECTT-----S---SCH---HHHHHHHT-TS-E-EEEEECSHHHH
T ss_pred HHHHHHHHhCCeEEEcC-----CHHHHhhccCCEEEeccc-----c---chh---hhhhhccc-ce-e-eeeeccchHHH
Confidence 45666667789988753 345667789999976321 1 112 23334443 32 3 33446899999
Q ss_pred HHHHHcCCCEEEEccccc
Q 020636 296 FKALALGASGIFVSIMPC 313 (323)
Q Consensus 296 ~kal~lGAd~V~iG~~~~ 313 (323)
.++...|||.|.+|..|-
T Consensus 129 ~~a~~~g~DYi~~gpvf~ 146 (226)
T d2tpsa_ 129 KQAEEDGADYVGLGPIYP 146 (226)
T ss_dssp HHHHHHTCSEEEECCSSC
T ss_pred HHHHhCcCCeEEEecccc
Confidence 999999999999998764
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=85.28 E-value=5 Score=28.83 Aligned_cols=89 Identities=10% Similarity=-0.078 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHH-HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~-~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+-+..+.. +....+.++|..+ .+.-.|.|++.-+-. +...++++.++++.. .++|||+-.|..+..
T Consensus 15 ~~l~~~L~~~g~~--v~~a~~g~eal~~~~~~~~dlillD~~mP-----~~~G~el~~~lr~~~-~~~pvi~lt~~~~~~ 86 (119)
T d1peya_ 15 ILLNEVFNKEGYQ--TFQAANGLQALDIVTKERPDLVLLDMKIP-----GMDGIEILKRMKVID-ENIRVIIMTAYGELD 86 (119)
T ss_dssp HHHHHHHHHTTCE--EEEESSHHHHHHHHHHHCCSEEEEESCCT-----TCCHHHHHHHHHHHC-TTCEEEEEESSCCHH
T ss_pred HHHHHHHHHcCCE--EEEeCCHHHHHHHHHhCCCCEEEEeccCC-----CCCHHHHHHHHHHhC-CCCcEEEEecCCCHH
Confidence 3455554555543 3456778887544 456788888764321 124578888887654 479999999999999
Q ss_pred HHHHHHHcCCCEEEEcccc
Q 020636 294 DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~ 312 (323)
+..+++.+||+... -.+|
T Consensus 87 ~~~~a~~~Ga~~yl-~KP~ 104 (119)
T d1peya_ 87 MIQESKELGALTHF-AKPF 104 (119)
T ss_dssp HHHHHHHTTCCEEE-ESSC
T ss_pred HHHHHHHCCCCEEE-ECCC
Confidence 99999999999864 3444
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=85.27 E-value=1.3 Score=37.21 Aligned_cols=74 Identities=16% Similarity=0.079 Sum_probs=53.8
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCCCEEEEcccccc
Q 020636 235 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFVSIMPCQ 314 (323)
Q Consensus 235 ~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~~~~ 314 (323)
++++..+..+.||++|.|-.-. ..-..+++.|..+++.+ ++||+.-==|-++.++.++..+|||+|.+=-.++.
T Consensus 62 d~~~~a~~ye~GA~aiSVLTd~----~~F~Gs~~~l~~vr~~~--~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~ 135 (251)
T d1i4na_ 62 SLEDFIRMYDELADAISILTEK----HYFKGDPAFVRAARNLT--CRPILAKDFYIDTVQVKLASSVGADAILIIARILT 135 (251)
T ss_dssp CHHHHHHHHHHHCSEEEEECCC----SSSCCCTHHHHHHHTTC--CSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSC
T ss_pred cHHHHHHHHhcCCcceEEeccc----CCCCCCHHHHHHHhhcc--cCchhhhhhhhCHHHHHHHHhhccceEEeeccccc
Confidence 4555445557899999884311 00112456777777766 89999999999999999999999999987555554
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=84.47 E-value=3.3 Score=33.01 Aligned_cols=73 Identities=18% Similarity=0.065 Sum_probs=51.6
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCCCEEEEc
Q 020636 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFVS 309 (323)
Q Consensus 232 ~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-lGAd~V~iG 309 (323)
|+.+.+|++.+.++|||++-+--+-.. .+.-+.+...++.+.+ ++..++.=--.+.+++.+.+. ++.|.|++=
T Consensus 7 GIt~~~d~~~~~~~gaD~iGfif~~~S---pR~Vs~~~a~~i~~~~--~~~~V~Vfv~~~~~~i~~~~~~~~~d~iQlH 80 (198)
T d1piia1 7 GLTRGQDAKAAYDAGAIYGGLIFVATS---PRCVNVEQAQEVMAAA--PLQYVGVFRNHDIADVVDKAKVLSLAAVQLH 80 (198)
T ss_dssp CCCSHHHHHHHHHHTCSEEEEECCTTC---TTBCCHHHHHHHHHHC--CCEEEEEESSCCHHHHHHHHHHHTCSEEEEC
T ss_pred CCCcHHHHHHHHhCCCCEEEEEccCCC---CCCcCHHHHHHhhhhc--ccccceeeeccchhhHHHhhhcccccceeec
Confidence 568999999999999999976432221 1123456667777766 455555555578889888776 799999984
|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=84.33 E-value=2 Score=38.68 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=53.9
Q ss_pred EEEeccCCHHHHHHHHHcCCCEEEEcCCC-----C----CCCCCCcch----HHHHHHHHHHhc----------------
Q 020636 228 ILVKGVLTAEDARIAVQAGAAGIIVSNHG-----A----RQLDYVPAT----IMALEEVVKATQ---------------- 278 (323)
Q Consensus 228 v~vK~i~~~e~a~~~~~~Gad~i~vs~~g-----g----~~~~~~~~~----~~~l~~i~~~~~---------------- 278 (323)
+..=|+.++-.|..+.++|.++|.+||.+ + ...|.+.-+ ...+.+|..++.
T Consensus 65 v~~lGa~d~~~A~~~~kaGf~aiYvSG~~~sA~~~~~~~~~PD~gl~~~~~v~~~~~~I~~a~~~~d~~~~~~~~~~~~~ 144 (416)
T d1igwa_ 65 INSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDP 144 (416)
T ss_dssp EEEEBCCSHHHHHHHHHHTCCCEEECHHHHHHHSCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCTTCT
T ss_pred eeeCCcCCHHHHHHHHHcCCCEEEeccccccccccccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 44447899999999999999999998732 1 013433211 233444443331
Q ss_pred ---C-CCeEEEec--CCCCHHHHHH----HHHcCCCEEEEc
Q 020636 279 ---G-RIPVFLDG--GVRRGTDVFK----ALALGASGIFVS 309 (323)
Q Consensus 279 ---~-~~pvia~G--GI~~~~di~k----al~lGAd~V~iG 309 (323)
+ .+|||+|+ |.-+...+.+ +..+||.+|.|=
T Consensus 145 ~~~d~~lPIIADaDtGfG~~~nv~r~vk~~i~AGaagihiE 185 (416)
T d1igwa_ 145 RYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFE 185 (416)
T ss_dssp TCCCCCCCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccccccceeEEecccccCchHHHHHHHHHHHhCCCeEEEec
Confidence 0 28999987 7777776665 556899999874
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=84.32 E-value=5.6 Score=28.56 Aligned_cols=88 Identities=13% Similarity=-0.007 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHH-cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~-~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+-+.++.- +-...+.++|....+ .-.|.|++.-.-. ....++++.++++.- ..+|||+-.+-.+..+
T Consensus 15 ~l~~~L~~~G~~--v~~a~~g~eal~~l~~~~~dliilD~~mP-----~~~G~e~~~~i~~~~-~~~pvi~lt~~~~~~~ 86 (119)
T d2pl1a1 15 HLKVQIQDAGHQ--VDDAEDAKEADYYLNEHIPDIAIVDLGLP-----DEDGLSLIRRWRSND-VSLPILVLTARESWQD 86 (119)
T ss_dssp HHHHHHHHTTCE--EEEESSHHHHHHHHHHSCCSEEEECSCCS-----SSCHHHHHHHHHHTT-CCSCEEEEESCCCHHH
T ss_pred HHHHHHHHCCCE--EEEECCHHHHHHHHHhcccceeehhccCC-----CchhHHHHHHHHhcC-cccceEeeeccCCHHH
Confidence 344444445543 335678888766654 5578777754221 123578888887754 3799999999999999
Q ss_pred HHHHHHcCCCEEEEcccc
Q 020636 295 VFKALALGASGIFVSIMP 312 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~ 312 (323)
..+++.+||+.... .+|
T Consensus 87 ~~~a~~~Ga~~yl~-KP~ 103 (119)
T d2pl1a1 87 KVEVLSAGADDYVT-KPF 103 (119)
T ss_dssp HHHHHHTTCSEEEE-SSC
T ss_pred HHHHHHcCCCEEEE-CCC
Confidence 99999999998643 444
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.22 E-value=5.5 Score=28.48 Aligned_cols=88 Identities=16% Similarity=0.101 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHH-HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~-~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++.+-+..+.- +-...+.++|... .+...|.|++.-.-. +...++.+.++.+.- ++|||+-.+-.+..
T Consensus 14 ~~l~~~L~~~g~~--v~~a~~~~eal~~~~~~~~dlillD~~mp-----~~~G~~~~~~i~~~~--~~pvI~lt~~~~~~ 84 (117)
T d2a9pa1 14 DIIKFNMTKEGYE--VVTAFNGREALEQFEAEQPDIIILDLMLP-----EIDGLEVAKTIRKTS--SVPILMLSAKDSEF 84 (117)
T ss_dssp HHHHHHHHHTTCE--EEEESSHHHHHHHHHHHCCSEEEECSSCS-----SSCHHHHHHHHHTTC--CCCEEEEESCCSHH
T ss_pred HHHHHHHHHCCCE--EEEECCHHHHHHHHHhcCCCEEEeccccC-----CCCccHHHHHHHhCC--CCCEEEEecCCCHH
Confidence 3444444445543 3356777777544 467788888754321 123467787776542 79999999999999
Q ss_pred HHHHHHHcCCCEEEEcccc
Q 020636 294 DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~ 312 (323)
+..+++.+||+.. +-.+|
T Consensus 85 ~~~~a~~~Ga~d~-l~KP~ 102 (117)
T d2a9pa1 85 DKVIGLELGADDY-VTKPF 102 (117)
T ss_dssp HHHHHHHHTCSEE-EESSC
T ss_pred HHHHHHHcCCCEE-EECCC
Confidence 9999999999976 33444
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=83.99 E-value=6.2 Score=32.23 Aligned_cols=120 Identities=14% Similarity=0.140 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCcc
Q 020636 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (323)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (323)
.+++.+.+.++.+.+.|++++=+.++.+ +..
T Consensus 14 ~s~ee~~~~a~~~~~~Gf~~~KikvG~~-------------------------------------------------~~~ 44 (252)
T d1yeya1 14 YSDEKLVRLAKEAVADGFRTIKLKVGAN-------------------------------------------------VQD 44 (252)
T ss_dssp --CHHHHHHHHHHHHTTCSEEEEECCSC-------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCC-------------------------------------------------HHH
Confidence 3567777888888888999887665321 112
Q ss_pred CHHHHHHHHHhcC--CCEEEe--ccCCHHHHHHHHH----cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEE
Q 020636 213 SWKDVKWLQTITK--LPILVK--GVLTAEDARIAVQ----AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (323)
Q Consensus 213 ~~~~i~~i~~~~~--~pv~vK--~i~~~e~a~~~~~----~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvi 284 (323)
+.+.++.+|+.++ ..+.+= ...+.++|....+ .+...+- + ...+.....+.++.+.. ..+||.
T Consensus 45 di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~iE-------e-P~~~~d~~~~~~~~~~~-~~ipia 115 (252)
T d1yeya1 45 DIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIE-------E-PTSPDDVLGHAAIRQGI-TPVPVS 115 (252)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCEE-------C-CSCTTCHHHHHHHHHHS-TTSCEE
T ss_pred HHHHHHHHHHHhCCCceEeeccccCcchHHHHHHHHhhhhcCceeec-------C-CcchhhHHHHHHHhhcc-CCCcee
Confidence 3556778888763 233222 2256777665543 3333331 0 11223455566655543 268999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEcc
Q 020636 285 LDGGVRRGTDVFKALALG-ASGIFVSI 310 (323)
Q Consensus 285 a~GGI~~~~di~kal~lG-Ad~V~iG~ 310 (323)
++=.+.+..|+.+++..| +|.+++--
T Consensus 116 ~gE~~~~~~~~~~~i~~~a~d~~~~d~ 142 (252)
T d1yeya1 116 TGEHTQNRVVFKQLLQAGAVDLIQIDA 142 (252)
T ss_dssp CCTTCCSHHHHHHHHHHTCCSEECCCT
T ss_pred ccccccchhhhhhHhhccccceecccc
Confidence 999999999999999988 78887743
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.96 E-value=4.7 Score=29.65 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc----CCCeEEEecCC
Q 020636 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ----GRIPVFLDGGV 289 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~----~~~pvia~GGI 289 (323)
.+.++.+-+.++.- +..+.+.++|..+.+.-.|.|.+.-+-. +...++++.++++... ..+|||+-.|-
T Consensus 20 ~~~l~~~L~~~G~~--v~~a~~g~eal~~l~~~~dlillD~~mP-----~~dG~el~~~ir~~~~~~~~~~~~ii~lT~~ 92 (134)
T d1dcfa_ 20 RMVTKGLLVHLGCE--VTTVSSNEECLRVVSHEHKVVFMDVCMP-----GVENYQIALRIHEKFTKQRHQRPLLVALSGN 92 (134)
T ss_dssp HHHHHHHHHHTTCE--EEEESSHHHHHHHCCTTCSEEEEECCSS-----TTTTTHHHHHHHHHHC-CCSCCCEEEEEESC
T ss_pred HHHHHHHHHHCCCE--EEEECCHHHHHHHhhcCCCeEEEEeccC-----CCchHHHHHHHHHhcccccCCCCeEEEEeCC
Confidence 44565655666653 4456788888888777888887754321 1223566667765431 24789988888
Q ss_pred CCHHHHHHHHHcCCCEEEEcccc
Q 020636 290 RRGTDVFKALALGASGIFVSIMP 312 (323)
Q Consensus 290 ~~~~di~kal~lGAd~V~iG~~~ 312 (323)
.+.++..+++++|++.+.. .++
T Consensus 93 ~~~~~~~~~~~~G~~~~l~-KP~ 114 (134)
T d1dcfa_ 93 TDKSTKEKCMSFGLDGVLL-KPV 114 (134)
T ss_dssp CSHHHHHHHHHTTCCEEEE-SSC
T ss_pred CCHHHHHHHHHcCCCEEEE-CCC
Confidence 8999999999999998743 444
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=83.92 E-value=4.7 Score=32.16 Aligned_cols=77 Identities=12% Similarity=0.005 Sum_probs=51.5
Q ss_pred Ee--ccCCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCCCEE
Q 020636 230 VK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGI 306 (323)
Q Consensus 230 vK--~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di~kal~-lGAd~V 306 (323)
+| |+.+.+||+.+.++|||++-+--+... .+.-+.+...++...++..+..++.=.-.+..++.+.+. ++-+.|
T Consensus 4 IKICGit~~~da~~~~~~gad~iGfI~~~~S---pR~Vs~~~a~~i~~~~~~~~~~V~V~v~~~~~~i~~~~~~~~~~~v 80 (205)
T d1nsja_ 4 VKICGITNLEDALFSVESGADAVGFVFYPKS---KRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAV 80 (205)
T ss_dssp EEECCCCSHHHHHHHHHHTCSEEEEECCTTC---TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEE
T ss_pred EEEcCCCcHHHHHHHHhCCCCEEeEeccCCC---CCccCHHHHHHHHhhhcccceeeccccccHHHHHHhhhhhccccch
Confidence 56 568999999999999999976443321 112345666677776653444444333456777777765 789999
Q ss_pred EEc
Q 020636 307 FVS 309 (323)
Q Consensus 307 ~iG 309 (323)
++=
T Consensus 81 Qlh 83 (205)
T d1nsja_ 81 QLH 83 (205)
T ss_dssp EEC
T ss_pred hcc
Confidence 974
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=83.64 E-value=1.6 Score=37.67 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=35.9
Q ss_pred CCccCHHHHHHHHHhcCCCEEEeccC-----------------------CHHHHHHHHHcCCCEEEE
Q 020636 209 DRSLSWKDVKWLQTITKLPILVKGVL-----------------------TAEDARIAVQAGAAGIIV 252 (323)
Q Consensus 209 ~~~~~~~~i~~i~~~~~~pv~vK~i~-----------------------~~e~a~~~~~~Gad~i~v 252 (323)
.|.+.++.+++|++.+++|+++.|.. +.++.+++.+.|+.-|=+
T Consensus 186 ~~~l~~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~GV~KiNi 252 (305)
T d1rvga_ 186 RPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINT 252 (305)
T ss_dssp SCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEEE
T ss_pred cccchHHHHHHHHhccCCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHHcCeEEEEe
Confidence 35688999999999999999999743 467788889988777655
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=83.47 E-value=11 Score=31.29 Aligned_cols=84 Identities=15% Similarity=0.080 Sum_probs=49.6
Q ss_pred cceEECcccccccCCcHHHHHHHHHHHHcCCceee-----cCCCCCCHHHHHh-------cCC--CceeEEeeecCChHH
Q 020636 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (323)
Q Consensus 72 ~Pi~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~v-----s~~s~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 137 (323)
.|..+.|+.-.+-.+.++-..+.+-..+.|+..++ |++.+.+.||..+ ... .+.++... ..+-+.
T Consensus 7 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~~s~~~ 85 (295)
T d1hl2a_ 7 MAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG-CVSTAE 85 (295)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHH
T ss_pred eeeeECCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccc-cchhhH
Confidence 35566665333223444445666777777764332 2344566666322 222 34555554 345666
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 020636 138 VAQLVRRAERAGFKAIALT 156 (323)
Q Consensus 138 ~~~~~~~a~~~G~~al~it 156 (323)
+.++++.++++|++++.+.
T Consensus 86 ~i~~a~~a~~~Gad~~~v~ 104 (295)
T d1hl2a_ 86 SQQLAASAKRYGFDAVSAV 104 (295)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhcCCceeeee
Confidence 7788899999999999875
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=83.42 E-value=2.7 Score=35.97 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=50.1
Q ss_pred CCHHHHHH-HHHcCCCEEEEcCCCCC---CCC---CCcchHHHHHHHHHHhcCCCeEEE--ecCCCCHHHHHHHHHcCCC
Q 020636 234 LTAEDARI-AVQAGAAGIIVSNHGAR---QLD---YVPATIMALEEVVKATQGRIPVFL--DGGVRRGTDVFKALALGAS 304 (323)
Q Consensus 234 ~~~e~a~~-~~~~Gad~i~vs~~gg~---~~~---~~~~~~~~l~~i~~~~~~~~pvia--~GGI~~~~di~kal~lGAd 304 (323)
...+.... ..+.|++++.+.-.... ... .....++.+.++++.. +.|++. .|.+.+.+++.++...|||
T Consensus 107 ~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~vivk~v~~~~~~~~a~~~~~~GaD 184 (329)
T d1p0ka_ 107 ATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV--SVPVIVKEVGFGMSKASAGKLYEAGAA 184 (329)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC--SSCEEEEEESSCCCHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHc--CCCcEEEecCCcchHHHHHHHHhcCCC
Confidence 34454444 45689999987532211 111 1233467788888877 556665 7888999999999999999
Q ss_pred EEEEc
Q 020636 305 GIFVS 309 (323)
Q Consensus 305 ~V~iG 309 (323)
++.++
T Consensus 185 ~i~v~ 189 (329)
T d1p0ka_ 185 AVDIG 189 (329)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99995
|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]
Probab=83.01 E-value=3.8 Score=30.81 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=59.8
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHc-----------CCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhc-CC
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQA-----------GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GR 280 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~-----------Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~ 280 (323)
..+.++.+-+..+...-+-.+.+.++|..+++. ..|.|.+.-+-. +...++++.++++.-. .+
T Consensus 18 ~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlillD~~mP-----~~~G~el~~~ir~~~~~~~ 92 (149)
T d1k66a_ 18 DFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLP-----GTDGREVLQEIKQDEVLKK 92 (149)
T ss_dssp HHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCS-----SSCHHHHHHHHTTSTTGGG
T ss_pred HHHHHHHHHHHcCCceEEEEECChHHHHHHHHhhccccccccccCCCeEEcccccc-----CCCcHHHHHHHHhccccCC
Confidence 344566655555543333445778888777652 356666543211 1345778888765321 26
Q ss_pred CeEEEecCCCCHHHHHHHHHcCCCEEEE
Q 020636 281 IPVFLDGGVRRGTDVFKALALGASGIFV 308 (323)
Q Consensus 281 ~pvia~GGI~~~~di~kal~lGAd~V~i 308 (323)
+|||+-.+-.+..+..+++.+||+....
T Consensus 93 ipiI~lT~~~~~~~~~~~~~~Ga~~~l~ 120 (149)
T d1k66a_ 93 IPVVIMTTSSNPKDIEICYSYSISSYIV 120 (149)
T ss_dssp SCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 8999999999999999999999997654
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.92 E-value=0.72 Score=38.08 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=31.9
Q ss_pred CHHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 213 SWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 213 ~~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
..+.+..+++.. +.|+++. ||.++|+|+.+.+ ++|+|+|.
T Consensus 174 ~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVG 215 (231)
T d2f6ua1 174 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVG 215 (231)
T ss_dssp CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred hhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-cCCEEEEC
Confidence 345666666655 6999999 7899999999876 79999994
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=82.86 E-value=3.9 Score=35.79 Aligned_cols=40 Identities=20% Similarity=0.075 Sum_probs=33.8
Q ss_pred CHHHHHHHHHhcCCCEEEeccCCHHHHHHHHHcC-CCEEEE
Q 020636 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 252 (323)
Q Consensus 213 ~~~~i~~i~~~~~~pv~vK~i~~~e~a~~~~~~G-ad~i~v 252 (323)
....-+.+++.++.|++..++.+++.|+.+++.| +|.|.+
T Consensus 281 ~~~~~~~~~~~~~~~vi~~G~~t~~~ae~~l~~G~~DlV~~ 321 (363)
T d1vyra_ 281 SEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAF 321 (363)
T ss_dssp CHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred cHHHHHHHHHhcCceEEecCCCCHHHHHHHHHCCCcceehh
Confidence 3445567888889999999999999999999999 899977
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=82.67 E-value=4.3 Score=30.16 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHH-HcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~-~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+-+..+.- +....+.++|.... +.-.|.|++.-.-. ....++++.++++.. .++|||+-.|-.+.++
T Consensus 15 ~l~~~L~~~g~~--v~~~~~~~~al~~l~~~~~dlil~D~~mP-----~~~G~el~~~lr~~~-~~~pvI~lT~~~~~~~ 86 (140)
T d1qkka_ 15 AMQQTLELAGFT--VSSFASATEALAGLSADFAGIVISDIRMP-----GMDGLALFRKILALD-PDLPMILVTGHGDIPM 86 (140)
T ss_dssp HHHHHHHHTTCE--EEEESCHHHHHHTCCTTCCSEEEEESCCS-----SSCHHHHHHHHHHHC-TTSCEEEEECGGGHHH
T ss_pred HHHHHHHHCCCE--EEEeCChHHHHHHHhccCcchHHHhhccC-----CCCHHHHHHHHHHhC-CCCcEEEEECCCCHHH
Confidence 444444444443 33456777776655 45577776654321 134578888887754 3799999999999999
Q ss_pred HHHHHHcCCCEEEE
Q 020636 295 VFKALALGASGIFV 308 (323)
Q Consensus 295 i~kal~lGAd~V~i 308 (323)
+.+|+.+||+....
T Consensus 87 ~~~a~~~Ga~dyl~ 100 (140)
T d1qkka_ 87 AVQAIQDGAYDFIA 100 (140)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHcCCCEeec
Confidence 99999999987654
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.82 E-value=5.6 Score=28.53 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCEEEeccCCHHHHHHH-HHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 020636 215 KDVKWLQTITKLPILVKGVLTAEDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~~~e~a~~~-~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~ 293 (323)
+.++..-+.++.- +....+.++|..+ .+.-.|.|++.-+-. ....++++.++++.. ..|+|+-.+-.+..
T Consensus 14 ~~l~~~L~~~g~~--v~~a~~~~eal~~l~~~~~dliilD~~mP-----~~~G~e~~~~ir~~~--~~piI~lt~~~~~~ 84 (119)
T d1zh2a1 14 RFLRTALEGDGMR--VFEAETLQRGLLEAATRKPDLIILDLGLP-----DGDGIEFIRDLRQWS--AVPVIVLSARSEES 84 (119)
T ss_dssp HHHHHHHHTTTCE--EEEESSHHHHHHHHHHHCCSEEEEESEET-----TEEHHHHHHHHHTTC--CCCEEEEESCCSHH
T ss_pred HHHHHHHHHCCCE--EEEeCCHHHHHHHHHhcCCCEEEeccccC-----CCCCchHHHHHHhcc--CCcEEEEeccCCHH
Confidence 3444444555543 4456778887544 466889888754321 134577888887543 68999999999999
Q ss_pred HHHHHHHcCCCEEEEcccc
Q 020636 294 DVFKALALGASGIFVSIMP 312 (323)
Q Consensus 294 di~kal~lGAd~V~iG~~~ 312 (323)
+..+++.+||+.. +-.+|
T Consensus 85 ~~~~a~~~Ga~dy-l~KP~ 102 (119)
T d1zh2a1 85 DKIAALDAGADDY-LSKPF 102 (119)
T ss_dssp HHHHHHHHTCSEE-EESSC
T ss_pred HHHHHHHcCCCEE-EECCC
Confidence 9999999999976 34444
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=81.81 E-value=1.1 Score=37.06 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=31.1
Q ss_pred HHHHHHHHHhc-CCCEEEe-ccCCHHHHHHHHHcCCCEEEEc
Q 020636 214 WKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 214 ~~~i~~i~~~~-~~pv~vK-~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.+..+++.. +.|+++. ||.++|.|+.+. .+||+|+|.
T Consensus 169 ~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVG 209 (229)
T d1viza_ 169 IEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVG 209 (229)
T ss_dssp HHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-TTCSEEEEC
T ss_pred chhHHHHHhhccCcceEEEcccCCHHHHHHHH-cCCCEEEEC
Confidence 45566666554 5899999 789999999987 699999994
|
| >d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: EAL domain-like family: EAL domain domain: Hypothetical protein YkuI, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=81.33 E-value=1.7 Score=36.04 Aligned_cols=96 Identities=7% Similarity=0.079 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCEEEeccC-CHHHHHHHHHcCCCEEEEcCCCCCCCCCCcch---HHHHHHHHHHhcCCCeEEEecCCC
Q 020636 215 KDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 215 ~~i~~i~~~~~~pv~vK~i~-~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
+.++.+++. +.-+.+.... .......+.+.++|+|.++.+--+..+..... +..+..+.+.+ .+.||+.| |.
T Consensus 136 ~~l~~L~~~-G~~lalddfG~~~~sl~~L~~l~~d~IKld~s~i~~~~~~~~~~~~l~~l~~~a~~~--~~~vIaeG-VE 211 (261)
T d2basa1 136 HMLAYYRTY-GIKIAVDNIGKESSNLDRIALLSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKI--GAALLYED-IE 211 (261)
T ss_dssp HHHHHHHTT-TCEEEEEEETTTBCCHHHHHHHCCSEEEEECTTTC----CCHHHHHHHHHHHHHHHH--TCEEEEEC-CC
T ss_pred HHHHHHhhc-CceeeecCCccCccchhHHhhhhhhhhhcccccccccccchhhHHHHHHHHHHHHHc--CCEEEEEe-CC
Confidence 345666553 6777777542 22334566778999999975432222222333 34444555555 68888855 99
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCc
Q 020636 291 RGTDVFKALALGASGIFVSIMPCQCP 316 (323)
Q Consensus 291 ~~~di~kal~lGAd~V~iG~~~~~~~ 316 (323)
|..+...+..+|++.++ |. +++.|
T Consensus 212 ~~~~~~~l~~lg~d~~Q-G~-~~~~P 235 (261)
T d2basa1 212 ANFQLQYAWRNGGRYFQ-GY-YLVSP 235 (261)
T ss_dssp SHHHHHHHHHTTEEEEC-ST-TTCCC
T ss_pred cHHHHHHHHHcCCCEEE-CC-ccccc
Confidence 99999999999999886 54 44444
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=81.32 E-value=4.4 Score=33.16 Aligned_cols=42 Identities=31% Similarity=0.349 Sum_probs=34.4
Q ss_pred cCHHHHHHHHHhcCCCEEEe---ccCCHHHHHHHHHcCCCEEEEc
Q 020636 212 LSWKDVKWLQTITKLPILVK---GVLTAEDARIAVQAGAAGIIVS 253 (323)
Q Consensus 212 ~~~~~i~~i~~~~~~pv~vK---~i~~~e~a~~~~~~Gad~i~vs 253 (323)
.+.++++.+++..+..+-+| ||.+.++|..++++|++.|-.|
T Consensus 160 at~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~RiGtS 204 (225)
T d1mzha_ 160 TTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTS 204 (225)
T ss_dssp CCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhheecC
Confidence 35678888888876667777 7899999999999999998654
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.29 E-value=13 Score=30.73 Aligned_cols=178 Identities=16% Similarity=0.118 Sum_probs=92.4
Q ss_pred eEECcccccccCCcHHHHHHHHHHHHcCCceeec-----CCCCCCHHHHHhc------CCCceeEEeeecCChHHHHHHH
Q 020636 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-----SWSTSSVEEVAST------GPGIRFFQLYVYKDRNVVAQLV 142 (323)
Q Consensus 74 i~iaPm~~~~l~~~~~e~~~a~aa~~~G~~~~vs-----~~s~~~~eei~~~------~~~~~~~QLy~~~d~~~~~~~~ 142 (323)
-++.|+.-.+-.+.++-...++-..+.|+..++- ++...+.+|-.+. ...+..+.+. ..+-+...+++
T Consensus 6 a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~~~~i~gv~-~~st~~~i~~a 84 (293)
T d1w3ia_ 6 PIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKIIFQVG-GLNLDDAIRLA 84 (293)
T ss_dssp ECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEEEECC-CSCHHHHHHHH
T ss_pred EeeCCCCCCcCCCHHHHHHHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhhccccccccc-cchhhhhhhhh
Confidence 3445543322223344456777777788755432 2334555553221 1234556554 34556667788
Q ss_pred HHHHHcCCcEEEEecCCCCCCchHHHHhhccCCCCccccccccccccCCCccccchhhHHHHhhccCCccCHHHHHHHHH
Q 020636 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (323)
Q Consensus 143 ~~a~~~G~~al~itvd~p~~g~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 222 (323)
+.+++.|++++.+.. |.. + . +. ... -..+..+.+.+
T Consensus 85 ~~a~~~Ga~~~~~~~--P~~----------~--~-~~----------------~~~-------------~i~~~f~~Ia~ 120 (293)
T d1w3ia_ 85 KLSKDFDIVGIASYA--PYY----------Y--P-RM----------------SEK-------------HLVKYFKTLCE 120 (293)
T ss_dssp HHGGGSCCSEEEEEC--CCS----------C--S-SC----------------CHH-------------HHHHHHHHHHH
T ss_pred hhhhhhccccccccc--cch----------h--c-cc----------------hHH-------------HHHHHHHHHHH
Confidence 889999999987642 321 0 0 00 000 11234566667
Q ss_pred hcCCCEEEecc-------CCHHHHHHHHHcCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 020636 223 ITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (323)
Q Consensus 223 ~~~~pv~vK~i-------~~~e~a~~~~~~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~di 295 (323)
..++|+++=.. .+.+...++ + +.+-+- +.. .++....++.+. .++..|+ +|. . ..+
T Consensus 121 a~~~pi~lYn~P~~~g~~l~~~~~~~l---~-ni~giK-------~ss-~d~~~~~~~~~~-~~~~~v~-~G~-d--~~~ 183 (293)
T d1w3ia_ 121 VSPHPVYLYNYPTATGKDIDAKVAKEI---G-CFTGVK-------DTI-ENIIHTLDYKRL-NPNMLVY-SGS-D--MLI 183 (293)
T ss_dssp HCSSCEEEEECHHHHSCCCCHHHHHHH---C-CEEEEE-------ECC-SCHHHHHHHHHH-CTTSEEE-ECC-S--TTH
T ss_pred hhccceeeeccccccccccchhhHHhh---h-hhhccc-------ccc-ccHHHHHHHHhh-ccceecc-ccc-c--cch
Confidence 77889887643 455544433 2 222221 111 133344444433 3355554 443 2 246
Q ss_pred HHHHHcCCCEEEEccccc
Q 020636 296 FKALALGASGIFVSIMPC 313 (323)
Q Consensus 296 ~kal~lGAd~V~iG~~~~ 313 (323)
..++.+||++++-|..-+
T Consensus 184 ~~~~~~Ga~G~is~~~n~ 201 (293)
T d1w3ia_ 184 ATVASTGLDGNVAAGSNY 201 (293)
T ss_dssp HHHHHTTCCEEECGGGGT
T ss_pred hhhhccCCceeeecccch
Confidence 788999999998886533
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=81.21 E-value=3.6 Score=30.86 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCCEEEecc-CCHHH-HHHHHHcCCCEEEEcCCCCCCCCCCcchH-HHHHHHHHHhcCCCeEEEecCCC
Q 020636 214 WKDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVR 290 (323)
Q Consensus 214 ~~~i~~i~~~~~~pv~vK~i-~~~e~-a~~~~~~Gad~i~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~~pvia~GGI~ 290 (323)
...+..+-+..+.-++.=|. .+.++ +..+.+.++|.|.+|..-++. .+.+ +.+..+++.-..++||++-|++.
T Consensus 20 ~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~----~~~~~~~~~~l~~~~~~~i~iivGG~~~ 95 (137)
T d1ccwa_ 20 NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQG----EIDCKGLRQKCDEAGLEGILLYVGGNIV 95 (137)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTH----HHHHTTHHHHHHHTTCTTCEEEEEESCS
T ss_pred HHHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEEeeccccc----hHHHHHHHHHHHHhccCCCEEEEeCCcC
Confidence 34555554555655554454 34444 677889999999998754421 1222 23333433322369999988886
Q ss_pred C----HHHHH-HHHHcCCCEEE
Q 020636 291 R----GTDVF-KALALGASGIF 307 (323)
Q Consensus 291 ~----~~di~-kal~lGAd~V~ 307 (323)
+ ..++. +..++|.|+|.
T Consensus 96 ~~~~~~~~~~~~l~~~Gv~~if 117 (137)
T d1ccwa_ 96 VGKQHWPDVEKRFKDMGYDRVY 117 (137)
T ss_dssp SSSCCHHHHHHHHHHTTCSEEC
T ss_pred CCccccHHHHHHHHHcCCCEEE
Confidence 4 44444 44578999885
|
| >d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Transaldolase species: Escherichia coli [TaxId: 562]
Probab=80.95 E-value=3.2 Score=35.84 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=63.7
Q ss_pred cCHHHHHHHHHh--cCCCEEEeccCCHHHHHHHHHcCCCEEEEcCCCCCCCC-------------CCcchHHHHHHHHHH
Q 020636 212 LSWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKA 276 (323)
Q Consensus 212 ~~~~~i~~i~~~--~~~pv~vK~i~~~e~a~~~~~~Gad~i~vs~~gg~~~~-------------~~~~~~~~l~~i~~~ 276 (323)
.+|+=|+.++.. -++++-+-.+.+.+.|..+.++|+..|... -||-.| .+.+.+..+.++.+.
T Consensus 134 aT~eGi~A~~~L~~~GI~vN~TlvFS~~Qa~~aa~Aga~~iSpf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 211 (316)
T d1onra_ 134 STWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQY 211 (316)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEEB--SHHHHHHHHHSSSCCCCCGGGCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcccceeeecHHHHHHHHHcCCeEEeee--ecchhhhhhcccccccccccCCchHHHHHHHHHH
Confidence 467766665543 378999999999999999999999988663 232100 122334555555544
Q ss_pred h---cCCCeEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 020636 277 T---QGRIPVFLDGGVRRGTDVFKALALGASGIFVSIM 311 (323)
Q Consensus 277 ~---~~~~pvia~GGI~~~~di~kal~lGAd~V~iG~~ 311 (323)
. +.+..|++ ..+|+..++... +|||.+-+.-.
T Consensus 212 ~k~~g~~t~v~~-AS~r~~~~v~~l--aG~D~~Ti~p~ 246 (316)
T d1onra_ 212 YKEHGYETVVMG-ASFRNIGEILEL--AGCDRLTIAPA 246 (316)
T ss_dssp HHHTTCCCEEEE-BCCSSHHHHHHT--TTSSEEEECHH
T ss_pred HHHcCCCceeeh-hhccchhhHHHH--hcCCceecCHH
Confidence 3 22455555 679999998763 69999987643
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=80.13 E-value=8.4 Score=27.70 Aligned_cols=88 Identities=14% Similarity=0.047 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCCEEEeccCCHHHHHHHHH-cCCCEEEEcCCCCCCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 020636 216 DVKWLQTITKLPILVKGVLTAEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (323)
Q Consensus 216 ~i~~i~~~~~~pv~vK~i~~~e~a~~~~~-~Gad~i~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~~pvia~GGI~~~~d 294 (323)
.++.+-+..+. .+....+.++|....+ ...|.|++.-+-. ....++++.++++.- .++|+|.-.|-.+.+.
T Consensus 18 ~l~~~L~~~g~--~v~~a~~~~~al~~~~~~~~dlvi~D~~mp-----~~~G~e~~~~lr~~~-~~~~iI~lt~~~~~~~ 89 (123)
T d1dbwa_ 18 SLAFMLTMNGF--AVKMHQSAEAFLAFAPDVRNGVLVTDLRMP-----DMSGVELLRNLGDLK-INIPSIVITGHGDVPM 89 (123)
T ss_dssp HHHHHHHHTTC--EEEEESCHHHHHHHGGGCCSEEEEEECCST-----TSCHHHHHHHHHHTT-CCCCEEEEECTTCHHH
T ss_pred HHHHHHHHCCC--EEEEECCHHHHHHHHhhcCCcEEEEeccCc-----cccchHHHHHHHhcC-CCCeEEEEEeeCCHHH
Confidence 34444444454 3445678888877654 4566666544321 124578888887643 4799999999999999
Q ss_pred HHHHHHcCCCEEEEcccc
Q 020636 295 VFKALALGASGIFVSIMP 312 (323)
Q Consensus 295 i~kal~lGAd~V~iG~~~ 312 (323)
..+++.+||+.... ++|
T Consensus 90 ~~~a~~~Ga~~yl~-KP~ 106 (123)
T d1dbwa_ 90 AVEAMKAGAVDFIE-KPF 106 (123)
T ss_dssp HHHHHHTTCSEEEE-SSC
T ss_pred HHHHHHCCCCEEEE-CCC
Confidence 99999999997543 444
|