Citrus Sinensis ID: 020690

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQLQQQQPLTPTNNNNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAALHQQQMAVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGAPVHSTVPSSYVEDLESANGGRKVLTLFPTGDD
Secondary Structure (PSIPRED)
cccccccHHHHHcccccccccccccccccccccHHccccccccccccccccccccccccHHcccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccHEEEEccccccHHccccccHHHccHHHHHHHHHcccccHHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccHccccccEEEccccccc
Coil and Loop (DISEMBL)
MREDDSNWFARWeedlpsyeeliplsqtlispdlavafdirnpvngngngngNALSQHQQlqqqqpltptnnnnnsnsnnnnplgqsdfaaensaemgsggaggdepartlkrprlvwtpqlHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMqglsggggggaggvngggsgaagvnadpatdhlfasspvpahflhpgargnsdhflpyvpVAALHQQQMAVAAAvgnphlqghqyhrqmshfgspangqfehhlfarqaqpqqvhrmgapvhstvpssyvedlesanggrkvltlfptgdd
Flexible Loop (DISEMBL)
mreddsnwfARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQLQQQQPLTPTNNNNNSNSNNNNPLGQSDFAAENSAEMGSggaggdeparTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAALHQQQMAVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGAPVHSTVPSSYVedlesanggrkvltlfptgdd
Low Complexity Region (SEG)
MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVngngngngnALSQHqqlqqqqpltptnnnnnsnsnnnnPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLsggggggaggvngggsgaagvnaDPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAALHQQQMAVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGAPVHSTVPSSYVEDLESANGGRKVLTLFPTGDD
Disordered region (IsUnstruct)
*******WFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRN************************************************************************RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK******************************************AHFLHPGARGNSDHFLPYVPVAALHQQQMAVAAAVGNPHLQG*********************************************************************
Disordered Region (DISOPRED)
*****SNWF*RWEE**P**************PDLAVAFDIR***************************************************************************VWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYR*************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNA*************TPTNNNNNSNSNNNNPLGQSDFAAENSA***********PARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAALHQQQMAVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGAPVHSTVPSSYVEDLESANGGRKVLTLFPTGDD
Disordered Region (DISPRO)
*****SNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNAL********************************************************KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ********************************FASSPVPAHFLHPGARGNSDHFLPYVPVAALHQQQMAVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFA*************************D*******RKVLTL******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQLQQQQPLTPTNNNNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAALHQQQMAVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGAPVHSTVPSSYVEDLESANGGRKVLTLFPTGDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
Q940D0	690	Two-component response re	no	no	0.319	0.149	0.504	1e-21
Q9ZWJ9	664	Two-component response re	no	no	0.310	0.150	0.471	5e-20
Q9FGT7	635	Two-component response re	no	no	0.192	0.097	0.661	2e-19
P62598	596	Two-component response re	no	no	0.198	0.107	0.625	8e-18
Q8L9Y3	382	Two-component response re	no	no	0.192	0.162	0.645	9e-18
O49397	552	Two-component response re	no	no	0.217	0.126	0.563	4e-17
Q9LYP5	613	Putative two-component re	no	no	0.273	0.143	0.445	6e-15
Q7Y0W3	341	Two-component response re	N/A	no	0.192	0.181	0.596	3e-14
Q7Y0W5	341	Two-component response re	no	no	0.192	0.181	0.596	4e-14
Q9FFH0	386	Transcription activator G	no	no	0.186	0.155	0.55	4e-14

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 71/103 (68%)

Query: 73  NNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTPQLHKRFVDAVAH 132
           ++NS+S N     +S        E    G   DE A  LK+PR+VW+ +LH++FV AV  
Sbjct: 197 DDNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWSVELHQQFVAAVNQ 256

Query: 133 LGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLS 175
           LG++ AVPK I++LM+V GLTRENVASHLQKYR+YL+R+ G+S
Sbjct: 257 LGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRLGGVS 299

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 4/104 (3%)

Query: 72  NNNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTPQLHKRFVDAVA 131
           +NN+S+ N  N         E   + G       E + +LK+PR+VW+ +LH++FV AV 
Sbjct: 179 DNNSSSVNEGNGRSSRKRKEEEVDDQGDD----KEDSSSLKKPRVVWSVELHQQFVAAVN 234

Query: 132 HLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLS 175
            LG+  AVPK I+++M+V GLTRENVASHLQKYR+YL+R+ G+S
Sbjct: 235 QLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRLGGVS 278

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 53/62 (85%)

Query: 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169
           T K+PR+VW+ +LH++FV AV  LG+  AVPK I+ LMS++GLTRENVASHLQKYRLYLK
Sbjct: 191 TRKKPRVVWSQELHQKFVSAVQQLGLDKAVPKKILDLMSIEGLTRENVASHLQKYRLYLK 250

Query: 170 RM 171
           ++
Sbjct: 251 KI 252

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 53/64 (82%)

Query: 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171
           K+ R+VWT +LHK+FV AV  LG + A+PK I+ LM+V+ LTRENVASHLQK+RLYLKR+
Sbjct: 194 KKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKRI 253

Query: 172 QGLS 175
            G++
Sbjct: 254 SGVA 257

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 53/62 (85%)

Query: 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171
           K+ R+VW+ +LH++FV+AV  LGI  AVPK I++LM+V GL+RENVASHLQK+RLYLKR+
Sbjct: 199 KKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRL 258

Query: 172 QG 173
            G
Sbjct: 259 SG 260

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 55/71 (77%), Gaps = 1/71 (1%)

Query: 101 GAGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASH 160
           G   D+P    K+PR++WT +LH +F+ AV HLG++ AVPK I+ LM+VD LTRENVASH
Sbjct: 172 GNDNDDPTAQ-KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH 230

Query: 161 LQKYRLYLKRM 171
           LQK+R+ LK++
Sbjct: 231 LQKFRVALKKV 241

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=3

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 87  SDFAAENSAEMGSGGAG--GDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIM 144
           +D + +N     +GG    G+  ++  K+ ++ WT  LH  F+ A+ H+G+  AVPK I+
Sbjct: 194 TDGSRKNRKRKPNGGPSDDGESMSQPAKKKKIQWTDSLHDLFLQAIRHIGLDKAVPKKIL 253

Query: 145 QLMSVDGLTRENVASHLQKYRLYLKRM--QGL 174
             MSV  LTRENVASHLQKYR++L+R+  QGL
Sbjct: 254 AFMSVPYLTRENVASHLQKYRIFLRRVAEQGL 285

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica PE=2 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 45/62 (72%)

Query: 109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYL 168
           R L + RL WT QLH++F+ AV HLG   AVPK I+ +M V  LTRE VASHLQKYR+ L
Sbjct: 194 RDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQL 253

Query: 169 KR 170
           K+
Sbjct: 254 KK 255

Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp. japonica GN=EHD1 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 45/62 (72%)

Query: 109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYL 168
           R L + RL WT QLH++F+ AV HLG   AVPK I+ +M V  LTRE VASHLQKYR+ L
Sbjct: 194 RDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQL 253

Query: 169 KR 170
           K+
Sbjct: 254 KK 255

Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates HD3A and other FT-like genes independently from HD1. May also activate MADS-box transcription factors involved in flowering regulation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171
           K+P++ WTP+LH++FV AV  LG+  AVP  I+++M+V  LTR NVASHLQKYR + K +
Sbjct: 146 KKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKHL 205

Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
255552463	315	DNA binding protein, putative [Ricinus c	0.953	0.974	0.687	3e-93
224144059	323	predicted protein [Populus trichocarpa]	0.965	0.962	0.694	9e-92
224089929	318	predicted protein [Populus trichocarpa]	0.953	0.965	0.681	2e-91
147820325	306	hypothetical protein VITISV_007446 [Viti	0.919	0.967	0.650	5e-90
449453151	301	PREDICTED: uncharacterized protein LOC10	0.913	0.976	0.613	2e-89
356504655	312	PREDICTED: uncharacterized protein LOC10	0.947	0.977	0.638	2e-88
357509257	299	Two-component response regulator ARR1 [M	0.881	0.949	0.608	6e-88
225440143	306	PREDICTED: uncharacterized protein LOC10	0.919	0.967	0.653	8e-88
449437694	286	PREDICTED: uncharacterized protein LOC10	0.875	0.986	0.622	6e-86
15228370	335	myb family transcription factor [Arabido	0.916	0.880	0.580	2e-85

>gi|255552463|ref|XP_002517275.1| DNA binding protein, putative [Ricinus communis] gi|223543538|gb|EEF45068.1| DNA binding protein, putative [Ricinus communis]

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 227/330 (68%), Positives = 251/330 (76%), Gaps = 23/330 (6%)

Query: 1   MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQ 60
           MREDDSNWF++WEE+LPS EEL+PLSQTLI+PDLA+AFDIRNP     N           
Sbjct: 1   MREDDSNWFSKWEEELPSPEELMPLSQTLITPDLAIAFDIRNPTTNQQNQPIPPPPPPPP 60

Query: 61  LQQQQPLTPTNNNNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTP 120
           +     L+PTN   +S  N+      +++AA+ SA++GS GAG DEPARTLKRPRLVWTP
Sbjct: 61  ISTNT-LSPTNPLLSSQPNS------AEYAAD-SADLGSAGAG-DEPARTLKRPRLVWTP 111

Query: 121 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGG 180
           QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLS GG  
Sbjct: 112 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGAA 171

Query: 181 GAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPV------AA 234
           G  G  GGG GAA  +A  AT+HLFASSPVPAHFLHPG R NSDHFLP+VPV        
Sbjct: 172 GVNGSAGGGGGAAASDA--ATEHLFASSPVPAHFLHPG-RPNSDHFLPFVPVAALQHHHH 228

Query: 235 LHQQQMAVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGAPVHS 294
             Q   A AAAV +P LQ  QYHRQM HFGSP NGQF+H   ARQ+Q Q VHR+GAPVH+
Sbjct: 229 QQQMAAAAAAAVAHPQLQS-QYHRQMGHFGSPPNGQFDHPFLARQSQ-QPVHRIGAPVHN 286

Query: 295 TVPSSYVEDLESA--NGGRKVLTLFPTGDD 322
           TVP  YVEDLESA  NGGRKVLTLFPTGDD
Sbjct: 287 TVP-GYVEDLESANGNGGRKVLTLFPTGDD 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144059|ref|XP_002336105.1| predicted protein [Populus trichocarpa] gi|222872755|gb|EEF09886.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (878), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 232/334 (69%), Positives = 246/334 (73%), Gaps = 23/334 (6%)

Query: 1   MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQ 60
           MREDDSNWF+RWEE+LPS EEL+PLSQTLI+PDLA+AFDI NP N     N N+ S HQ 
Sbjct: 1   MREDDSNWFSRWEEELPSLEELMPLSQTLITPDLALAFDITNPTNTTNTNNHNS-SLHQN 59

Query: 61  LQQQQPLTPTNNNNNSNSNNNNPLGQS-----DFAAENSAEMGSGGAGGDEPARTLKRPR 115
              Q    P       +    NPL        DFA + S E+GSG AGGDEPARTLKRPR
Sbjct: 60  ---QPLPPPPPPPAAVSPTPTNPLASPQPNSGDFATD-SGELGSG-AGGDEPARTLKRPR 114

Query: 116 LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLS 175
           LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM+VDGLTRENVASHLQKYRLYLKRMQG  
Sbjct: 115 LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMNVDGLTRENVASHLQKYRLYLKRMQG-L 173

Query: 176 GGGGGGAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPV--- 232
             GGGG G    GG G     +D ATDHLFASSPVPAHFLHPG R NSDHFLP+VPV   
Sbjct: 174 SSGGGGPGNGAVGGGGGLTGGSDAATDHLFASSPVPAHFLHPG-RPNSDHFLPFVPVAAL 232

Query: 233 --AALHQQQMAVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGA 290
                 QQ  A AAAVG+P LQG QYHR M HFGSP NGQFEH   ARQ Q Q VHRMGA
Sbjct: 233 QQHHHQQQMAAAAAAVGHPQLQG-QYHRPMGHFGSPTNGQFEHPFLARQTQ-QPVHRMGA 290

Query: 291 PVHSTVPSSYVEDLESANG--GRKVLTLFPTGDD 322
           PVH+ VP  YVEDLESANG  GRKVLTLFPTGDD
Sbjct: 291 PVHNAVP-GYVEDLESANGNEGRKVLTLFPTGDD 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089929|ref|XP_002308869.1| predicted protein [Populus trichocarpa] gi|222854845|gb|EEE92392.1| predicted protein [Populus trichocarpa]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 227/333 (68%), Positives = 242/333 (72%), Gaps = 26/333 (7%)

Query: 1   MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQ 60
           MREDDSNWF+RWEE+LPS EEL+PLSQTLI+PDLA+AFDI NP N       N  +    
Sbjct: 1   MREDDSNWFSRWEEELPSLEELMPLSQTLITPDLALAFDITNPSNTTTTTTTNNHNSSLH 60

Query: 61  LQQQQPLTPTNNNNNSNSNNNNPLGQS-----DFAAENSAEMGSGGAGGDEPARTLKRPR 115
            Q Q    P       +    NPL        DFAA+ S+E+GSG AG DEP RTLKRPR
Sbjct: 61  -QNQPLPPPPPPPAAVSPTPTNPLASPQPNSGDFAAD-SSELGSGAAG-DEP-RTLKRPR 116

Query: 116 LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLS 175
           LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM+VDGLTRENVASHLQKYRLYLKRMQGLS
Sbjct: 117 LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMNVDGLTRENVASHLQKYRLYLKRMQGLS 176

Query: 176 GGGGGGAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAAL 235
                G GG   GG G      D ATDHLFASSPVPAHFLHPG R NSDHFLP+VPVAAL
Sbjct: 177 ----SGGGGNGTGGGGGLTGGTDAATDHLFASSPVPAHFLHPG-RPNSDHFLPFVPVAAL 231

Query: 236 ----HQQQMAVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGAP 291
               HQ QM   AA+G+P L   QYHRQM HFGSP NGQFEH    RQ Q Q VHRMGAP
Sbjct: 232 QNHHHQHQM---AAMGHPQLPS-QYHRQMGHFGSPTNGQFEHPFLPRQTQ-QPVHRMGAP 286

Query: 292 VHSTVPSSYVEDLESA--NGGRKVLTLFPTGDD 322
           V +TVP  YVEDLES   NGGRKVLTLFPTGDD
Sbjct: 287 VPNTVP-GYVEDLESVNGNGGRKVLTLFPTGDD 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820325|emb|CAN73573.1| hypothetical protein VITISV_007446 [Vitis vinifera]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 216/332 (65%), Positives = 241/332 (72%), Gaps = 36/332 (10%)

Query: 1   MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQ 60
           MRE++SNWF+RWEE+LPS EEL+PLSQTLI+PDLA+AFDIRNP +               
Sbjct: 1   MREEESNWFSRWEEELPSPEELMPLSQTLITPDLALAFDIRNPNSP-------------- 46

Query: 61  LQQQQPLTPTNNNNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTP 120
              Q P  P      +    + P    +F   +S ++GSG AG DEPARTLKRPRLVWTP
Sbjct: 47  ---QAPTPPLPTPQVAPPPPSQPNSAPEF---DSGDLGSGAAG-DEPARTLKRPRLVWTP 99

Query: 121 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGG 180
           QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG    GGG
Sbjct: 100 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG-LSAGGG 158

Query: 181 GAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAAL----- 235
           G GG  G G GA    ADPATDHLFASSPVP HFLHPG R +S+HFLP+VPVAAL     
Sbjct: 159 GGGGGGGAGGGAGLAAADPATDHLFASSPVPPHFLHPG-RASSEHFLPFVPVAALQQHHH 217

Query: 236 --HQQQMAVAAAVGNPHLQG-HQYHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGAPV 292
              Q  +A AA   +P LQ  + +HRQ+ HFGSP NGQFEH    RQ+QP  VHRMGAPV
Sbjct: 218 HHQQMAVAAAAVAAHPQLQTQYHHHRQVGHFGSPPNGQFEHPFLPRQSQP--VHRMGAPV 275

Query: 293 HSTVPSSYVEDLES--ANGGRKVLTLFPTGDD 322
           HS VP +YVEDLES  A GGR+VLTLFPTGDD
Sbjct: 276 HSPVP-AYVEDLESATATGGRRVLTLFPTGDD 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453151|ref|XP_004144322.1| PREDICTED: uncharacterized protein LOC101216969 [Cucumis sativus]

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 202/329 (61%), Positives = 231/329 (70%), Gaps = 35/329 (10%)

Query: 1   MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQ 60
           MRE+ SNWF+RWE++LPS +EL+PLSQTLI+PDLA+AFDI+NP N +      +      
Sbjct: 1   MREEHSNWFSRWEDELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPP---- 56

Query: 61  LQQQQPLTPTNNNNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTP 120
                     +N    + N   P   +DF   +SA++GSG A  DEPARTLKRPRLVWTP
Sbjct: 57  ---------LSNPLPGSGNGIVPPNSADFG--DSADLGSGAAS-DEPARTLKRPRLVWTP 104

Query: 121 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGG 180
           QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ        
Sbjct: 105 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ-------- 156

Query: 181 GAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAALHQQQM 240
           G  G  GGG  A   ++DPATDHLFASSPVP H LH  AR +SDHFLPYVP+A L Q   
Sbjct: 157 GLSGGGGGGGAALVGSSDPATDHLFASSPVPPHLLH-SARTSSDHFLPYVPMATLQQHHH 215

Query: 241 AVAAAVGNPHLQGHQ-----YHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGAPVHST 295
                     + GH      YHRQ+ HFGSP NGQFEH   ARQ+QP  +HRMG PVH++
Sbjct: 216 HQQQMAAAAAVAGHTQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQP--IHRMGTPVHNS 273

Query: 296 VPSSYVEDLESAN--GGRKVLTLFPTGDD 322
           VP +Y+EDLESAN  GGRKVLTLFPTGDD
Sbjct: 274 VP-NYIEDLESANATGGRKVLTLFPTGDD 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504655|ref|XP_003521111.1| PREDICTED: uncharacterized protein LOC100815363 [Glycine max]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 210/329 (63%), Positives = 230/329 (69%), Gaps = 24/329 (7%)

Query: 1   MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQ 60
           MRE+DSNWF+RWEE+ PS EEL+PLSQTLI+PDLA+AFDIRNP   N     +   Q Q 
Sbjct: 1   MREEDSNWFSRWEEEFPSPEELMPLSQTLITPDLAMAFDIRNPHTTNTAQQQHHQHQQQP 60

Query: 61  LQQQQPLTPTNNNNNSNSNNNNPLGQS-DFAAENSAEMGSGGAGGDEPARTLKRPRLVWT 119
            QQQQP  P++  N            S +FA  +S E+GSG AG +EPARTLKRPRLVWT
Sbjct: 61  QQQQQPSNPSSLPNPLQQQQQQQQPTSAEFA--DSGELGSGTAG-EEPARTLKRPRLVWT 117

Query: 120 PQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGG 179
           PQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG+S  G 
Sbjct: 118 PQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGP 177

Query: 180 GGAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAALHQQQ 239
           GG GG   G        ADPATDHLFASSPVPAHFLHP AR NSDHFLP+VP  ALH  Q
Sbjct: 178 GGPGGGASGAV------ADPATDHLFASSPVPAHFLHPAARPNSDHFLPFVP--ALHPHQ 229

Query: 240 MAVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFAR-QAQPQQVHRMGAPVHST--V 296
                A         QYHRQ+ HFGSP NG FE+   +R   Q       G PVH+    
Sbjct: 230 QQQQMAAAA------QYHRQVGHFGSPPNGHFENPFMSRPNLQRMGGGGGGGPVHNNHHP 283

Query: 297 PSSYVEDLESAN---GGRKVLTLFPTGDD 322
            S YVED+ESAN   GGRKVLTLFPTGDD
Sbjct: 284 VSGYVEDMESANAASGGRKVLTLFPTGDD 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509257|ref|XP_003624917.1| Two-component response regulator ARR1 [Medicago truncatula] gi|124361203|gb|ABN09175.1| Homeodomain-related [Medicago truncatula] gi|355499932|gb|AES81135.1| Two-component response regulator ARR1 [Medicago truncatula]

 Score =  330 bits (846), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 205/337 (60%), Positives = 224/337 (66%), Gaps = 53/337 (15%)

Query: 1   MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQ 60
           MREDDSNWF+RWEE LP  EEL+PLSQTLI+PDLA+AFDIRN  N           Q   
Sbjct: 1   MREDDSNWFSRWEEQLPPPEELMPLSQTLITPDLAIAFDIRNNPNPPTIPPPQQQQQQPP 60

Query: 61  LQQQQPLTPTNNNNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTP 120
                  T                   DFA  +S E+ SG AG +EPARTLKRPRLVWTP
Sbjct: 61  PSSLPSST-------------------DFA--DSTELTSGTAG-EEPARTLKRPRLVWTP 98

Query: 121 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGG 180
           QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG+S GGGG
Sbjct: 99  QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGGGG 158

Query: 181 GAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAALHQQQM 240
           GA      G G+A VN D ATDHLFASSPVP HFLHP AR NSDHF+P+VPV A+H QQ 
Sbjct: 159 GA-----SGGGSASVN-DAATDHLFASSPVPPHFLHPVARPNSDHFMPFVPVPAIHHQQQ 212

Query: 241 AVAAAVGNPHLQGHQYHRQMSHFGSPANGQFEHHLFAR---------QAQPQQVHRMGAP 291
             AA          QYHR + HFGSP NG F++   +R             QQ+HR+GA 
Sbjct: 213 MAAA----------QYHRPVGHFGSPPNGHFDNPFLSRQQHHQQQNQHQHQQQLHRIGAQ 262

Query: 292 VHSTV----PSSYVEDLESAN--GGRKVLTLFPTGDD 322
           VH          YVED+ESAN  GGRKVLTLFPTGDD
Sbjct: 263 VHHNTLGGGGGGYVEDMESANASGGRKVLTLFPTGDD 299

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440143|ref|XP_002283226.1| PREDICTED: uncharacterized protein LOC100256764 isoform 1 [Vitis vinifera] gi|359481436|ref|XP_003632618.1| PREDICTED: uncharacterized protein LOC100256764 isoform 2 [Vitis vinifera]

 Score =  329 bits (844), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 217/332 (65%), Positives = 241/332 (72%), Gaps = 36/332 (10%)

Query: 1   MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQ 60
           MRE++SNWF+RWEE+LPS EEL+PLSQTLI+PDLA+AFDIRNP +           Q   
Sbjct: 1   MREEESNWFSRWEEELPSPEELMPLSQTLITPDLALAFDIRNPNSPQAPPPPLPTPQVAP 60

Query: 61  LQQQQPLTPTNNNNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTP 120
               QP             N+ P    +F   +S ++GSG AG DEPARTLKRPRLVWTP
Sbjct: 61  PPPSQP-------------NSAP----EF---DSGDLGSGAAG-DEPARTLKRPRLVWTP 99

Query: 121 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGG 180
           QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG    GGG
Sbjct: 100 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG-LSAGGG 158

Query: 181 GAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAAL----- 235
           G GG  G G GA    ADPATDHLFASSPVP HFLHPG R +S+HFLP+VPVAAL     
Sbjct: 159 GGGGGGGAGGGAGLAAADPATDHLFASSPVPPHFLHPG-RASSEHFLPFVPVAALQQHHH 217

Query: 236 --HQQQMAVAAAVGNPHLQG-HQYHRQMSHFGSPANGQFEHHLFARQAQPQQVHRMGAPV 292
              Q  +A AA   +P LQ  + +HRQ+ HFGSP NGQFEH    RQ+QP  VHRMGAPV
Sbjct: 218 HHQQMAVAAAAVAAHPQLQTQYHHHRQVGHFGSPPNGQFEHPFLPRQSQP--VHRMGAPV 275

Query: 293 HSTVPSSYVEDLES--ANGGRKVLTLFPTGDD 322
           HS VP +YVEDLES  A GGR+VLTLFPTGDD
Sbjct: 276 HSPVP-AYVEDLESATATGGRRVLTLFPTGDD 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437694|ref|XP_004136626.1| PREDICTED: uncharacterized protein LOC101216059 [Cucumis sativus] gi|449533272|ref|XP_004173600.1| PREDICTED: uncharacterized LOC101216059 [Cucumis sativus]

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 203/326 (62%), Positives = 231/326 (70%), Gaps = 44/326 (13%)

Query: 1   MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQ 60
           M+EDDSNWF++WE++LPS +EL+PLSQTLI+PDLA+AFDI N    N +           
Sbjct: 1   MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNSNPPNDSHPPPPPPPPPV 60

Query: 61  LQQQQPLTPTNNNNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTP 120
           L Q     PT+               +DFA  +S ++GSG   GDEPARTLKRPRLVWTP
Sbjct: 61  LIQ-----PTS---------------ADFA--DSGDLGSGA--GDEPARTLKRPRLVWTP 96

Query: 121 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGG 180
           QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG+SGG GG
Sbjct: 97  QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGG 156

Query: 181 GAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAALHQQQM 240
           GA G  G  S A    +DPATDHLFASSPVP HFLH  ARGNSDHFLP+VPV AL     
Sbjct: 157 GANGGAGLVSTA----SDPATDHLFASSPVPPHFLH-SARGNSDHFLPFVPVGALQHHHH 211

Query: 241 AVAAAVGNPHLQGHQYHRQMSHFGS--PANGQFEHHLFARQAQPQQVHRMGAPVHSTVPS 298
            +AAA         QYHRQ++HFGS  P NGQFE+   AR      VHR+GAP  + V +
Sbjct: 212 QMAAAA-----AAAQYHRQVAHFGSSPPTNGQFENTFLAR-----PVHRVGAPASTPV-T 260

Query: 299 SYVEDLESAN--GGRKVLTLFPTGDD 322
           +Y EDL+S N  GGRKVLTLFPTG+D
Sbjct: 261 NYSEDLDSGNGTGGRKVLTLFPTGND 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228370|ref|NP_187687.1| myb family transcription factor [Arabidopsis thaliana] gi|6630554|gb|AAF19573.1|AC011708_16 unknown protein [Arabidopsis thaliana] gi|332641430|gb|AEE74951.1| myb family transcription factor [Arabidopsis thaliana]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 210/362 (58%), Positives = 236/362 (65%), Gaps = 67/362 (18%)

Query: 1   MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVNGNGNGNGNALSQHQQ 60
           MREDDS+WFARWEE+LPS EEL+P+SQ+LISPDLA+AFDIR P +GNGN N      H Q
Sbjct: 1   MREDDSDWFARWEEELPSPEELMPISQSLISPDLALAFDIRTPNHGNGNSNQPHHHHHHQ 60

Query: 61  LQQ---QQPLTPTNNNNNSNSNNNNPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLV 117
                  Q   P++  N+S          ++FAA+ SA++GSGGA GDEPARTLKRPRLV
Sbjct: 61  TTPPTPSQLQLPSSQANSS----------AEFAAD-SADLGSGGAAGDEPARTLKRPRLV 109

Query: 118 WTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGG 177
           WTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ     
Sbjct: 110 WTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ----- 164

Query: 178 GGGGAGGVNGGGSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLP-YVPVAAL- 235
                     G S   G  +DPATD LFASSPVPAHFLHP    +SDHF+P +VP+A L 
Sbjct: 165 ----------GLSSGGGAGSDPATDRLFASSPVPAHFLHPNRVPSSDHFMPSFVPIATLQ 214

Query: 236 ---HQQQMAVAAAVGNPHLQGHQYHRQM--SHFGSPANGQFE------------------ 272
                   A AAA  NPHLQ  Q+HRQ+  +HFGSP NG F                   
Sbjct: 215 QQQQMAAAAAAAAAANPHLQPPQFHRQIAAAHFGSPTNGGFSSPTSNGQFGSPTSNGFGS 274

Query: 273 ---------HHLFARQAQPQQVHRMGAP-VHSTVPSSYVEDLES--ANGGRKVLTLFPTG 320
                      L  RQ Q Q + RM  P +HS V S+YVEDLES  ANGGR VLTLFPT 
Sbjct: 275 PTTNGKFDPSFLAVRQTQQQPIQRMSTPSLHSPV-SNYVEDLESANANGGRTVLTLFPTR 333

Query: 321 DD 322
           DD
Sbjct: 334 DD 335

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2175364	266	AT5G05090 "AT5G05090" [Arabido	0.279	0.338	0.822	2.9e-71
TAIR|locus:2103247	335	AT3G10760 "AT3G10760" [Arabido	0.962	0.925	0.507	4.4e-68
TAIR|locus:2058445	248	MYBC1 "AT2G40970" [Arabidopsis	0.618	0.802	0.571	2.6e-57
TAIR|locus:2148348	298	BOA "AT5G59570" [Arabidopsis t	0.711	0.768	0.419	8.3e-35
TAIR|locus:2093668	690	RR1 "response regulator 1" [Ar	0.229	0.107	0.608	3e-19
TAIR|locus:2130095	664	RR2 "response regulator 2" [Ar	0.223	0.108	0.589	4.2e-18
TAIR|locus:2040194	596	RR12 "response regulator 12" [	0.195	0.105	0.634	7.4e-18
TAIR|locus:2065398	382	RR14 "response regulator 14" [	0.208	0.175	0.602	5.5e-17
TAIR|locus:2116587	552	RR10 "response regulator 10" [	0.217	0.126	0.563	2e-16
UNIPROTKB|Q5Z5I4	455	GLK1 "Probable transcription f	0.245	0.173	0.468	6e-14

TAIR|locus:2175364 AT5G05090 "AT5G05090" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 2.9e-71, Sum P(3) = 2.9e-71
 Identities = 74/90 (82%), Positives = 79/90 (87%)

Query:    83 PLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKT 142
             PL Q+     NS+   +G + GDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKT
Sbjct:    51 PLPQTTPPQPNSSAEIAGDSTGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKT 110

Query:   143 IMQLMSVDGLTRENVASHLQKYRLYLKRMQ 172
             IMQLMSVDGLTRENVASHLQKYRLYLKRM+
Sbjct:   111 IMQLMSVDGLTRENVASHLQKYRLYLKRMK 140

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2103247 AT3G10760 "AT3G10760" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 176/347 (50%), Positives = 201/347 (57%)

Query:     1 MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVXXXXXXXXXALSQHXX 60
             MREDDS+WFARWEE+LPS EEL+P+SQ+LISPDLA+AFDIR P              H  
Sbjct:     1 MREDDSDWFARWEEELPSPEELMPISQSLISPDLALAFDIRTPNHGNGNSNQPHHHHHHQ 60

Query:    61 XXXXXXXXXXXXXXXXXXXXXXPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTP 120
                                       ++FAA+ SA++GSGGA GDEPARTLKRPRLVWTP
Sbjct:    61 TTPPTPSQLQLPSSQANSS-------AEFAAD-SADLGSGGAAGDEPARTLKRPRLVWTP 112

Query:   121 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLXXXXXX 180
             QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGL      
Sbjct:   113 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGA 172

Query:   181 XXXXXXXXXXXXXXXXXD-------PATDHLFASSPVPAHFLHP-----GARGNSDHFLP 228
                                      P++DH F  S VP   L        A   +    P
Sbjct:   173 GSDPATDRLFASSPVPAHFLHPNRVPSSDH-FMPSFVPIATLQQQQQMAAAAAAAAAANP 231

Query:   229 YVPVAALHQQQMAVAAAVGNPHLQGH-------QYHRQMSH-FGSPA-NGQFEHHLFA-R 278
             ++     H+Q    AA  G+P   G        Q+    S+ FGSP  NG+F+    A R
Sbjct:   232 HLQPPQFHRQ--IAAAHFGSPTNGGFSSPTSNGQFGSPTSNGFGSPTTNGKFDPSFLAVR 289

Query:   279 QAQPQQVHRMGAP-VHSTVPSSYVEDLESAN--GGRKVLTLFPTGDD 322
             Q Q Q + RM  P +HS V S+YVEDLESAN  GGR VLTLFPT DD
Sbjct:   290 QTQQQPIQRMSTPSLHSPV-SNYVEDLESANANGGRTVLTLFPTRDD 335

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2058445 MYBC1 "AT2G40970" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
 Identities = 124/217 (57%), Positives = 137/217 (63%)

Query:     1 MREDDSNWFARWEEDLPSYEELIPLSQTLISPDLAVAFDIRNPVXXXXXXXXXALSQHXX 60
             MRED+ NWF RWEE+LPS EELIP+SQTLI+P LA+AF I +P          A+  H  
Sbjct:     1 MREDNPNWFLRWEEELPSPEELIPISQTLITPHLALAFQIGSPNHHLGSKRTTAI-YHQK 59

Query:    61 XXXXXXXXXXXXXXXXXXXXXXPLGQSDFAAENSAEMGSGGAGGDEPARTLKRPRLVWTP 120
                                    +  SDF   +S ++GSG  GG EPARTLKRPRLVWTP
Sbjct:    60 LQSSTTPTTPTPTPPPM------MMNSDFGGGDSTDLGSGSIGG-EPARTLKRPRLVWTP 112

Query:   121 QLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLXXXXXX 180
             QLHKRFVDAV HLGIKNAVPKTIMQLMSV+GLTRENVASHLQKYRLYL+RMQG       
Sbjct:   113 QLHKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLYLRRMQG------- 165

Query:   181 XXXXXXXXXXXXXXXXXDPATDHLFASSPVPAHFLHP 217
                              D ATD LFASSPVPAHFL P
Sbjct:   166 ---GNGNGITGGHVIVSDSATDRLFASSPVPAHFLSP 199

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009409 "response to cold" evidence=IMP

TAIR|locus:2148348 BOA "AT5G59570" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 114/272 (41%), Positives = 139/272 (51%)

Query:    12 WEEDLPSYEELIPLSQTLISPDLAVAFDI---RN-PVXXXXXXXXXALSQ-HXXXXXXXX 66
             WE  LP+ ++L PLSQ L+   LA+AF +   R+  +          LS           
Sbjct:    29 WEIGLPNGDDLTPLSQYLVPSILALAFSMIPERSRTIHDVNRASQITLSSLRSSTNASSV 88

Query:    67 XXXXXXXXXXXXXXXXPLGQ--SD----FAAENS-AEMGSGGAGGDEPARTLKRPRLVWT 119
                             P  Q  SD     A E+S AE G  G   D   +T KRPRLVWT
Sbjct:    89 MEEVVDRVESSVPGSDPKKQKKSDGGEAAAVEDSTAEEGDSGPE-DASGKTSKRPRLVWT 147

Query:   120 PQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLXXXXX 179
             PQLHKRFVD VAHLGIKNAVPKTIMQLM+V+GLTRENVASHLQKYRLYLKR+QGL     
Sbjct:   148 PQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRIQGLTTEE- 206

Query:   180 XXXXXXXXXXXXXXXXXXDP--ATDHLFASSPVPAHFLHPGARGNSDHFLPYVPVAALHQ 237
                               DP  ++D LF+S+PVP      G   N    +P VPV +   
Sbjct:   207 ------------------DPYSSSDQLFSSTPVPPQSFQDGGGSNGKLGVP-VPVPS--- 244

Query:   238 QQMAVAAAVGNPH-LQGHQYHRQMSHFGSPAN 268
               M      GN   +QG  Y++Q S+ G+ +N
Sbjct:   245 --MVPIPGYGNQMGMQG--YYQQYSNHGNESN 272

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

TAIR|locus:2093668 RR1 "response regulator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 45/74 (60%), Positives = 60/74 (81%)

Query:   101 GAGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASH 160
             G   DE A  LK+PR+VW+ +LH++FV AV  LG++ AVPK I++LM+V GLTRENVASH
Sbjct:   225 GDDKDEDASNLKKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASH 284

Query:   161 LQKYRLYLKRMQGL 174
             LQKYR+YL+R+ G+
Sbjct:   285 LQKYRIYLRRLGGV 298

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;RCA;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI;RCA

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2130095 RR2 "response regulator 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 43/73 (58%), Positives = 60/73 (82%)

Query:   103 GGD-EPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHL 161
             G D E + +LK+PR+VW+ +LH++FV AV  LG+  AVPK I+++M+V GLTRENVASHL
Sbjct:   205 GDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHL 264

Query:   162 QKYRLYLKRMQGL 174
             QKYR+YL+R+ G+
Sbjct:   265 QKYRIYLRRLGGV 277

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IEP;IGI

GO:0010150 "leaf senescence" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0007623 "circadian rhythm" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2040194 RR12 "response regulator 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 7.4e-18, Sum P(2) = 7.4e-18
 Identities = 40/63 (63%), Positives = 52/63 (82%)

Query:   112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171
             K+ R+VWT +LHK+FV AV  LG + A+PK I+ LM+V+ LTRENVASHLQK+RLYLKR+
Sbjct:   194 KKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKRI 253

Query:   172 QGL 174
              G+
Sbjct:   254 SGV 256

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

TAIR|locus:2065398 RR14 "response regulator 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 5.5e-17, P = 5.5e-17
 Identities = 41/68 (60%), Positives = 56/68 (82%)

Query:   106 EPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYR 165
             +P  + K+ R+VW+ +LH++FV+AV  LGI  AVPK I++LM+V GL+RENVASHLQK+R
Sbjct:   194 DPGNS-KKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFR 252

Query:   166 LYLKRMQG 173
             LYLKR+ G
Sbjct:   253 LYLKRLSG 260

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2116587 RR10 "response regulator 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 40/71 (56%), Positives = 55/71 (77%)

Query:   101 GAGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASH 160
             G   D+P    K+PR++WT +LH +F+ AV HLG++ AVPK I+ LM+VD LTRENVASH
Sbjct:   172 GNDNDDPTAQ-KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH 230

Query:   161 LQKYRLYLKRM 171
             LQK+R+ LK++
Sbjct:   231 LQKFRVALKKV 241

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;RCA;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI;RCA

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

UNIPROTKB|Q5Z5I4 GLK1 "Probable transcription factor GLK1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 193 (73.0 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 37/79 (46%), Positives = 51/79 (64%)

Query:    93 NSAEMGSGGAGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGL 152
             +S E  S      + +   K+ ++ WTP+LH+RFV AV  LGI  AVP  I+++M +D L
Sbjct:   160 SSQEAESRHKSSSKSSHGKKKAKVDWTPELHRRFVQAVEQLGIDKAVPSRILEIMGIDSL 219

Query:   153 TRENVASHLQKYRLYLKRM 171
             TR N+ASHLQKYR + K M
Sbjct:   220 TRHNIASHLQKYRSHRKHM 238

GO:0010638 "positive regulation of organelle organization" evidence=IGI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023291001 SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (306 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-21
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	2e-13
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-07

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 85.5 bits (212), Expect = 2e-21
 Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 113 RPRLVWTPQLHKRFVDAVAHLGIKN-AVPKTIMQLMSVDGLTRENVASHLQKYRL 166
           +PR+VWT  LH RF+ AV  LG  + A PK I++LM VDGLTR+ VASHLQKYRL
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 70.6 bits (172), Expect = 2e-13
 Identities = 31/60 (51%), Positives = 44/60 (73%)

Query: 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171
           K+ ++ WTP+LH+RFV AV  LG++ A P  I++LM V  LTR N+ASHLQKYR + + +
Sbjct: 234 KKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL 293

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYR 165
           R  WTP+  +  ++AV   G  N     I + +   G T     +    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN--WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
PLN03162	526	golden-2 like transcription factor; Provisional	99.96
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.85
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.06
smart00426	68	TEA TEA domain.	94.85
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	94.75
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	94.65
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	89.11
PF01285	431	TEA: TEA/ATTS domain family; InterPro: IPR000818 T	87.81
KOG3841	455	consensus TEF-1 and related transcription factor,	85.27
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	80.68

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.96  E-value=3.6e-30  Score=250.67  Aligned_cols=133  Identities=35%  Similarity=0.586  Sum_probs=100.3

Q ss_pred             cCCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcCCCCCCCCCCCCCCCC
Q 020690          109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGAGGVNGG  188 (322)
Q Consensus       109 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ls~~g~~~~~~~~~~  188 (322)
                      .+.||+||+||+|||+|||+||++||.++||||+||++|||+|||++||||||||||++++++.......+.        
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~s--------  302 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAAS--------  302 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhcc--------
Confidence            457899999999999999999999999999999999999999999999999999999999987655444322        


Q ss_pred             CCCCCCCCCCCcccccccCCCCCCccCCCCCCCCCCCCCC-ceecchhhHHHHHHHHHhcCCCccCCccc---ccccccC
Q 020690          189 GSGAAGVNADPATDHLFASSPVPAHFLHPGARGNSDHFLP-YVPVAALHQQQMAVAAAVGNPHLQGHQYH---RQMSHFG  264 (322)
Q Consensus       189 ~~~~~~~~~~~~~~~lfa~sPvp~~~l~p~~r~~~~~~~p-~vp~~~~~~~~~~~~a~~~~~~~~~~~~h---r~~~~~g  264 (322)
                                +...+++..+|.+        |-+.....| +|||+.++.|..+.++++.+|.++. ++|   |++-.||
T Consensus       303 ----------wt~kr~~~~~P~~--------rs~~~~g~p~~~pigfP~~~P~P~~~~~~~P~~~~-~Hhpf~rPLhVWG  363 (526)
T PLN03162        303 ----------WTHRRAYTQAPWP--------RSSRRDGLPYLVPIHTPHIQPRPSMAMAMQPQLQT-PHHPISTPLKVWG  363 (526)
T ss_pred             ----------chhhhhhccCCcc--------cCCCCCCCccccccCCCCCCCCCCccCCCCCCccc-ccccccccceecc
Confidence                      1334455555433        222222234 4777777766556666777888776 444   8888888


Q ss_pred             CCCC
Q 020690          265 SPAN  268 (322)
Q Consensus       265 ~p~~  268 (322)
                      .|+-
T Consensus       364 hPtv  367 (526)
T PLN03162        364 YPTV  367 (526)
T ss_pred             CCCC
Confidence            7653

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.85  E-value=1.1e-21  Score=146.02  Aligned_cols=55  Identities=64%  Similarity=1.016  Sum_probs=53.1

Q ss_pred             CCccccChHHHHHHHHHHHHhCC-CCCChHHHHHhhCCCCCCHHHHHHHhhhhHhh
Q 020690          113 RPRLVWTPQLHKRFVDAVAHLGI-KNAVPKTIMQLMSVDGLTRENVASHLQKYRLY  167 (322)
Q Consensus       113 KpRl~WT~ELH~rFVeAV~qLG~-dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~  167 (322)
                      |+|++||+|+|.+||+||++||. +.|+||+|+++|++++||+.||+|||||||++
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            68999999999999999999996 89999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.06  E-value=9.6e-06  Score=56.95  Aligned_cols=48  Identities=27%  Similarity=0.353  Sum_probs=42.2

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYR  165 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYR  165 (322)
                      |..||+|.+++|++||.++|.+  .++.|.+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5689999999999999999965  6999999999 6789999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=94.85  E-value=0.032  Score=44.18  Aligned_cols=45  Identities=31%  Similarity=0.429  Sum_probs=30.3

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCChH-H-----------------HHHhhCCCCCCHHHHHHHhhh
Q 020690          117 VWTPQLHKRFVDAVAHLGIKNAVPK-T-----------------IMQLMSVDGLTRENVASHLQK  163 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qLG~dkAtPK-~-----------------ILelM~V~GLTrenVkSHLQK  163 (322)
                      +|.++|-..|++|++.+=. ..+-| +                 |...-|. --|+.||.||+|.
T Consensus         5 vWp~~lE~Af~~aL~~~~~-~g~~kik~~~r~k~~gRNelIs~YI~~~tGk-~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYPP-CGRRKIILSDEGKMYGRNELIARYIKLRTGK-TRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcCc-cCcccchhhhcCcccchhHHHHHHHHHHhCC-ccchhhhcchhee
Confidence            7999999999999997642 11111 2                 2222221 2499999999995

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=94.75  E-value=0.12  Score=33.47  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=37.0

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          117 VWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      .||.+-.+.|+.++.++|.  ..++.|.+.|+-  -|..+|+.+.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~--~~w~~Ia~~~~~--rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK--NNWEKIAKELPG--RTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc--CCHHHHHhHcCC--CCHHHHHHHHHHh
Confidence            4999999999999999993  239999999865  5999999887654

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=94.65  E-value=0.14  Score=33.52  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=36.7

Q ss_pred             cccChHHHHHHHHHHHHhC-CCCCChHHHHHhhCCCCCCHHHHHHHhhh
Q 020690          116 LVWTPQLHKRFVDAVAHLG-IKNAVPKTIMQLMSVDGLTRENVASHLQK  163 (322)
Q Consensus       116 l~WT~ELH~rFVeAV~qLG-~dkAtPK~ILelM~V~GLTrenVkSHLQK  163 (322)
                      -.||++-...|+++++++| .+   ++.|.+.|.  +-|..+|+.+..+
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~---w~~Ia~~~~--~rt~~~~~~~~~~   45 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNN---WEKIAKELP--GRTAEQCRERWNN   45 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCC---HHHHHHHcC--CCCHHHHHHHHHH
Confidence            4699999999999999999 44   999999987  6699999877554

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=89.11  E-value=0.55  Score=36.15  Aligned_cols=59  Identities=15%  Similarity=0.265  Sum_probs=42.7

Q ss_pred             ccChHHHHHHHHHHHHh---CC-------CCCChHHHHHhhCC---CCCCHHHHHHHhhhhHhhhhhhcCCC
Q 020690          117 VWTPQLHKRFVDAVAHL---GI-------KNAVPKTIMQLMSV---DGLTRENVASHLQKYRLYLKRMQGLS  175 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qL---G~-------dkAtPK~ILelM~V---~GLTrenVkSHLQKYRl~lkr~~~ls  175 (322)
                      +||++..+.||+++...   |.       ++...+.|.+.++-   ..+|..||++|+...|..-+....+-
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~   72 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELR   72 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999998633   42       23456678877774   45899999999988776665444443

>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids

Probab=87.81  E-value=0.41  Score=48.52  Aligned_cols=52  Identities=27%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             CCCccccChHHHHHHHHHHHHh---CCCCCC------------hHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          112 KRPRLVWTPQLHKRFVDAVAHL---GIKNAV------------PKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       112 kKpRl~WT~ELH~rFVeAV~qL---G~dkAt------------PK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      ++..-+|++++...|++|+..+   |..|-.            -..|...-| .--|++||.||+|..
T Consensus        46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl  112 (431)
T PF01285_consen   46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVL  112 (431)
T ss_dssp             GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHH
Confidence            4567899999999999999966   433200            112222222 235999999999998

The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.

>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]

Probab=85.27  E-value=2.3  Score=43.53  Aligned_cols=52  Identities=27%  Similarity=0.500  Sum_probs=34.8

Q ss_pred             CCccccChHHHHHHHHHHHHh---CCCC----------CChHHHHHhhCC---CCCCHHHHHHHhhhh
Q 020690          113 RPRLVWTPQLHKRFVDAVAHL---GIKN----------AVPKTIMQLMSV---DGLTRENVASHLQKY  164 (322)
Q Consensus       113 KpRl~WT~ELH~rFVeAV~qL---G~dk----------AtPK~ILelM~V---~GLTrenVkSHLQKY  164 (322)
                      -.--+|+++.-+.|.||+..+   |..|          ..=.-|-..++.   +--||.||.||.|..
T Consensus        74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVl  141 (455)
T KOG3841|consen   74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL  141 (455)
T ss_pred             ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            345689999999999999966   4211          111223333333   346999999999974

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=80.68  E-value=4.1  Score=29.19  Aligned_cols=41  Identities=17%  Similarity=0.298  Sum_probs=33.5

Q ss_pred             cChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhh
Q 020690          118 WTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK  163 (322)
Q Consensus       118 WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQK  163 (322)
                      ||+|--.+.+++|...|.+   ++.|-+.|+  .-|..+|+.+..+
T Consensus         1 WT~eEd~~L~~~~~~~g~~---W~~Ia~~l~--~Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGND---WKKIAEHLG--NRTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS----HHHHHHHST--TS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcC---HHHHHHHHC--cCCHHHHHHHHHH
Confidence            9999999999999999964   999999996  4688999877666

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	322
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		6e-17

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 51/60 (85%)
Query: 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171
           K+PR++WT +LH +F+ AV HLG++ AVPK I+ LM+VD LTRENVASHLQK+R+ LK++
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	2e-30

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score =  109 bits (273), Expect = 2e-30
 Identities = 37/62 (59%), Positives = 51/62 (82%)

Query: 110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 169
             K+PR++WT +LH +F+ AV HLG++ AVPK I+ LM+VD LTRENVASHLQK+R+ LK
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61

Query: 170 RM 171
           ++
Sbjct: 62  KV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.96
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	97.45
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	97.29
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	97.02
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	96.57
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	96.52
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.49
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	96.0
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	95.74
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	95.66
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	95.44
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	94.99
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	94.92
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	94.87
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	94.65
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	94.55
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	94.35
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	94.15
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	94.01
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	93.94
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	93.57
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	93.45
2cjj_A	93	Radialis; plant development, DNA-binding protein,	93.28
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	91.98
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	91.75
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	90.9
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	90.07
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	89.94
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	89.16
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	88.29
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	87.87
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	87.39
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	87.12
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	86.26
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	85.67
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	85.23
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	83.76
2crg_A	70	Metastasis associated protein MTA3; transcription	83.12
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	82.24
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	81.73
1wh5_A	80	ZF-HD homeobox family protein; structural genomics	81.36

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.96  E-value=2.6e-30  Score=196.32  Aligned_cols=62  Identities=60%  Similarity=1.025  Sum_probs=60.0

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690          110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM  171 (322)
Q Consensus       110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~  171 (322)
                      +.+|+|++||+|||++||+||++||.++|+||+|+++|||+|||++||||||||||++++|.
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~   63 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence            46899999999999999999999999999999999999999999999999999999999985

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=97.45  E-value=0.00038  Score=53.72  Aligned_cols=51  Identities=12%  Similarity=0.126  Sum_probs=43.7

Q ss_pred             cCCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       109 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      +.....+-.||+|.+++|++||+.+| .  .+++|-++|+  +-|..||+.|-++|
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~--~W~~IA~~v~--~RT~~qcr~r~~~~   62 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-D--DWNKVSEHVG--SRTQDECILHFLRL   62 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-S--CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-C--CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            34455678899999999999999999 3  4999999987  56999999998877

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.29  E-value=0.00057  Score=50.95  Aligned_cols=56  Identities=21%  Similarity=0.290  Sum_probs=46.7

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCC---CChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690          113 RPRLVWTPQLHKRFVDAVAHLGIKN---AVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR  170 (322)
Q Consensus       113 KpRl~WT~ELH~rFVeAV~qLG~dk---AtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr  170 (322)
                      ..+-.||+|.+++|+++|+.+|.+.   -.++.|-+.|+  +-|..||+.|-|||...+.+
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~--~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG--NRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS--SSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC--CCCHHHHHHHHHHHHHHHHh
Confidence            3455799999999999999999643   45899999885  67999999999999876654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.02  E-value=0.0035  Score=46.64  Aligned_cols=54  Identities=20%  Similarity=0.189  Sum_probs=45.9

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690          113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM  171 (322)
Q Consensus       113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~  171 (322)
                      ..+-.||+|.++.|+++|+.+|.   .++.|-++|  +|-|..+|+.|.++|.....+.
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR---RWTKISKLI--GSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS---CHHHHHHHH--SSSCHHHHHHHHHHHHHHHSCS
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc---CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhc
Confidence            45668999999999999999997   499999987  4679999999999987666543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=96.57  E-value=0.0081  Score=43.30  Aligned_cols=50  Identities=26%  Similarity=0.337  Sum_probs=42.0

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHh
Q 020690          113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL  166 (322)
Q Consensus       113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl  166 (322)
                      ..+-.||+|..++++++|+.+|..+  ++.|-+.|.  +-|..|++.|-++|-.
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~~--~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDCGFGN--WQDVANQMC--TKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTCTTC--HHHHHHHHT--TSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCc--HHHHHHHhC--CCCHHHHHHHHHHHcc
Confidence            3456799999999999999999533  999999994  6799999999877643

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=96.52  E-value=0.0036  Score=57.77  Aligned_cols=54  Identities=17%  Similarity=0.276  Sum_probs=47.4

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhh
Q 020690          110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYL  168 (322)
Q Consensus       110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~l  168 (322)
                      ...|..-+||+|.++.|++|+..+|-+   +..|-++|+  +-|..+|++|-++||.++
T Consensus       128 ~~~k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~Vg--TKT~~QcKnfY~~~kKRl  181 (235)
T 2iw5_B          128 VIQKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIG--NKSVVQVKNFFVNYRRRF  181 (235)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHHHS--SCCHHHHHHHHHHTTTTT
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHcC--CCCHHHHHHHHHHHHHHh
Confidence            445678899999999999999999965   999999865  559999999999999774

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.49  E-value=0.0034  Score=62.75  Aligned_cols=53  Identities=17%  Similarity=0.269  Sum_probs=47.7

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690          112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK  169 (322)
Q Consensus       112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk  169 (322)
                      .|..-+||+|.|..|+++|.+.|-+   ++.|-+.++..  |..||++|-+|||.++.
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGkd---w~~IA~~VgTK--T~~Qvk~fy~~~kkr~~  429 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIGNK--SVVQVKNFFVNYRRRFN  429 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTTC---HHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence            4567899999999999999999965   99999998876  99999999999998653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=96.00  E-value=0.015  Score=41.74  Aligned_cols=49  Identities=22%  Similarity=0.297  Sum_probs=41.5

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL  166 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl  166 (322)
                      +-.||+|..++++++|+++|..+  ++.|-+.|+. +-|..|++.|-++|.+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~~--W~~IA~~~~~-~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLGN--WADIADYVGN-ARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTTC--HHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence            34699999999999999999543  9999999973 4599999999988754

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=95.74  E-value=0.03  Score=41.36  Aligned_cols=52  Identities=15%  Similarity=0.158  Sum_probs=42.7

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690          113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK  169 (322)
Q Consensus       113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk  169 (322)
                      +.|-.||+|.-++.+++|+++|..+  ++.|.+.+...+-|-.|++-   +||..+|
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~---Rw~nl~k   60 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIKD---RWRTMKR   60 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCc--hHHHHhhcCCCCCCHHHHHH---HHHHHhc
Confidence            4456799999999999999999643  99999998888889999874   5666555

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=95.66  E-value=0.03  Score=42.59  Aligned_cols=50  Identities=10%  Similarity=0.121  Sum_probs=40.5

Q ss_pred             ccccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhHhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQKYRLY  167 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQKYRl~  167 (322)
                      .-.||.|-+++|+.|+..++.+ .-.+.+|-+.|   |-|.++|+.|-+++...
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence            3469999999999999999843 34588999998   47999999987776443

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=95.44  E-value=0.052  Score=39.84  Aligned_cols=56  Identities=18%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690          110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR  170 (322)
Q Consensus       110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr  170 (322)
                      ..++.|-.||+|.-.+.+++|+.+|..  .++.|.+.|...|-|-.+++.+   |+.+|+.
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~R---w~~~l~p   60 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKDR---WRTMKKL   60 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSS--CHHHHHHHSCCSSCCHHHHHHH---HHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCC--cHHHHHHHcCcCCCCHHHHHHH---HHHHcCC
Confidence            356788899999999999999999953  3999999997657799999865   5555653

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.99  E-value=0.12  Score=37.43  Aligned_cols=53  Identities=9%  Similarity=0.130  Sum_probs=43.2

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhc
Q 020690          114 PRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ  172 (322)
Q Consensus       114 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~  172 (322)
                      .+-.||+|..++++++++.+|.   .+..|-++|+   -|-.+|+.|-++|-....+..
T Consensus         8 ~k~~WT~eED~~L~~~~~~~g~---~W~~Ia~~~g---Rt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            8 KKTEWSREEEEKLLHLAKLMPT---QWRTIAPIIG---RTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SCCCCCHHHHHHHHHHHHHCTT---CHHHHHHHHS---SCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC---CHHHHhcccC---cCHHHHHHHHHHHhChHhcCC
Confidence            4557999999999999999996   4999999665   699999999888755554433

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=94.92  E-value=0.095  Score=37.27  Aligned_cols=49  Identities=12%  Similarity=0.168  Sum_probs=40.2

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      ...|-.||+|..++++++|+++|..  .++.|.+.|  ++-|-.+++.+-++|
T Consensus         5 ~~~k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            5 SSGKVKWTHEEDEQLRALVRQFGQQ--DWKFLASHF--PNRTDQQCQYRWLRV   53 (60)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHTCTT--CHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHc--cCCCHHHHHHHHHHH
Confidence            3456789999999999999999952  399999997  467999998776554

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.87  E-value=0.092  Score=38.07  Aligned_cols=51  Identities=18%  Similarity=0.134  Sum_probs=39.2

Q ss_pred             CCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690          111 LKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK  169 (322)
Q Consensus       111 ~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk  169 (322)
                      .++..-.||+|.|+.|++++.+.|-+   ..+|.++|  ++-|..+|..   .|-+..|
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~gk~---w~~Ia~~l--~~rt~~~~v~---~Yy~~Kk   58 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHPKN---FGLIASYL--ERKSVPDCVL---YYYLTKK   58 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHSTTC---HHHHHHHC--TTSCHHHHHH---HHHHHTC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCCC---HHHHHHHc--CCCCHHHHHH---HHHHhcC
Confidence            34667899999999999999999943   89998775  5679888864   3544433

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=94.65  E-value=0.075  Score=43.33  Aligned_cols=58  Identities=17%  Similarity=0.184  Sum_probs=47.3

Q ss_pred             cCCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHhhhhhh
Q 020690          109 RTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS--VDGLTRENVASHLQKYRLYLKRM  171 (322)
Q Consensus       109 ~~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTrenVkSHLQKYRl~lkr~  171 (322)
                      ...++.|-.||+|.-+..+++|+++|..+  ++.|++.+.  .++-|..++|.   |||..+++.
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~f~~RT~v~lKd---rWrnllk~~   66 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGR--WRDVKLCAFEDADHRTYVDLKD---KWKTLVHTA   66 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSS--HHHHHSSSSSSTTCCCHHHHHH---HHHHHHHTT
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHHHHhccccCCCCHHHHHH---HHHHHHhhc
Confidence            34578899999999999999999999633  999999763  37889999985   788888754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=94.55  E-value=0.09  Score=36.30  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=38.9

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      +-.||+|..++++++|+++|..  .++.|.+.|.  |-|..+++.|-++|
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~~--~Rt~~qcr~Rw~~~   48 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGTD--DWKVIANYLP--NRTDVQCQHRWQKV   48 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSS--CHHHHHHTST--TCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            4579999999999999999962  3999998874  67999999876665

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=94.35  E-value=0.097  Score=36.21  Aligned_cols=46  Identities=17%  Similarity=0.268  Sum_probs=38.6

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      +-.||+|..++++++|+++|..  .++.|.+.|  +|-|..+++.|-++|
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~   48 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGPK--RWSVIAKHL--KGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTT--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            4579999999999999999953  399998887  467999999876655

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=94.15  E-value=0.12  Score=39.42  Aligned_cols=50  Identities=12%  Similarity=0.116  Sum_probs=38.8

Q ss_pred             CccccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 020690          114 PRLVWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQKYR  165 (322)
Q Consensus       114 pRl~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQKYR  165 (322)
                      .+-.||.+..++|++||..+|.+ .-.+.+|-++|  +|-|..+|+.|-+++.
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L~   67 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLLV   67 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            34569999999999999999943 12366776665  5889999999977653

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=94.01  E-value=0.048  Score=43.30  Aligned_cols=58  Identities=22%  Similarity=0.316  Sum_probs=38.5

Q ss_pred             CCccccChHHHHHHHHHHHHhC---CCCC--C------------hHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690          113 RPRLVWTPQLHKRFVDAVAHLG---IKNA--V------------PKTIMQLMSVDGLTRENVASHLQKYRLYLKRM  171 (322)
Q Consensus       113 KpRl~WT~ELH~rFVeAV~qLG---~dkA--t------------PK~ILelM~V~GLTrenVkSHLQKYRl~lkr~  171 (322)
                      +..-+|.++|-..|++|++.+=   ..+-  +            -..|....| .--|+.||.||||.-+...++.
T Consensus         4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~~   78 (82)
T 2hzd_A            4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSRD   78 (82)
T ss_dssp             GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTTC
T ss_pred             CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhhh
Confidence            3456899999999999999764   2211  0            001111222 3459999999999988776653

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=93.94  E-value=0.23  Score=41.48  Aligned_cols=57  Identities=21%  Similarity=0.207  Sum_probs=47.5

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHhhhhhh
Q 020690          110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS--VDGLTRENVASHLQKYRLYLKRM  171 (322)
Q Consensus       110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTrenVkSHLQKYRl~lkr~  171 (322)
                      ..+|.|-.||+|.-+..+++|+++|..+  ++.|++.+.  .++-|..++|   .|||..+++.
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~~~~RT~vdlK---dRWrnllk~~   84 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGR--WRDVKFRAFENVHHRTYVDLK---DKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSC--HHHHHHHHHSSSCCCCHHHHH---HHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCC--hHHHHHHhccccCCCCHHHHH---HHHHHHHhhc
Confidence            3567888999999999999999999633  999999763  4788999999   5788888754

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=93.57  E-value=0.24  Score=34.52  Aligned_cols=46  Identities=15%  Similarity=0.142  Sum_probs=38.4

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQ  162 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQ  162 (322)
                      |-.||+|..+..+++|+.+|..  .++.|.+.|+..|-|-.+++-+-.
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~Rw~   47 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKDRWR   47 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCCCHHHHHHHHH
Confidence            4579999999999999999953  399999999765779999986533

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.45  E-value=0.25  Score=36.20  Aligned_cols=48  Identities=15%  Similarity=0.171  Sum_probs=39.8

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      ..+-.||+|..++++++|+++|..  .++.|-+.|+  +-|..+++-+-.+|
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~l~--~Rt~~qcr~Rw~~~   54 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGKN--QWSRIASLLH--RKSAKQCKARWYEW   54 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCSS--CHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHhc--CCCHHHHHHHHHHH
Confidence            456689999999999999999943  3999999987  67999998765554

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=93.28  E-value=0.19  Score=40.02  Aligned_cols=55  Identities=20%  Similarity=0.252  Sum_probs=44.9

Q ss_pred             cccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhc
Q 020690          116 LVWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ  172 (322)
Q Consensus       116 l~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~  172 (322)
                      -.||.|..+.|++|+..+|.+ .-.+.+|-+.|  +|-|.++|+.|-+++...++.+.
T Consensus         9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~dv~~ie   64 (93)
T 2cjj_A            9 RPWSAKENKAFERALAVYDKDTPDRWANVARAV--EGRTPEEVKKHYEILVEDIKYIE   64 (93)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS--TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhh
Confidence            369999999999999999854 23588898877  47899999999998877765543

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=91.98  E-value=0.39  Score=37.60  Aligned_cols=51  Identities=14%  Similarity=0.173  Sum_probs=42.5

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR  170 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr  170 (322)
                      +-.||+|....++++|..+|.+   +..|-+.|  +|-|..+|+.|-..+...+.+
T Consensus        53 ~~~WT~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           53 TDPWSPEEDMLLDQKYAEYGPK---WNKISKFL--KNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             TCCCCHHHHHHHHHHHHHTCSC---HHHHHHHH--SSSCHHHHHHHHHHHHHHHHS
T ss_pred             ccccCHHHHHHHHHHHHHhCcC---HHHHHHHC--CCCCHHHHHHHHHHHHhhHHH
Confidence            4579999999999999999963   99999987  678999999987766555443

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.75  E-value=0.6  Score=34.14  Aligned_cols=52  Identities=19%  Similarity=0.248  Sum_probs=37.7

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690          112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR  170 (322)
Q Consensus       112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr  170 (322)
                      +..+-.||+|.++.|.+|+.+.|-+   ...|.+.| |+.-|..+|.   +-|-+..|.
T Consensus         6 ~~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v---~fYY~wKkt   57 (63)
T 2yqk_A            6 SGIEKCWTEDEVKRFVKGLRQYGKN---FFRIRKEL-LPNKETGELI---TFYYYWKKT   57 (63)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHTCSC---HHHHHHHS-CTTSCHHHHH---HHHHHHHCS
T ss_pred             CcCCCCcCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCcHHHHH---HHHhcccCC
Confidence            3456789999999999999999965   78887632 3455888875   455444443

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=90.90  E-value=0.63  Score=36.22  Aligned_cols=50  Identities=18%  Similarity=0.223  Sum_probs=41.2

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHhhhhhh
Q 020690          117 VWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS--VDGLTRENVASHLQKYRLYLKRM  171 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTrenVkSHLQKYRl~lkr~  171 (322)
                      .||+|..+..+++|+++|..+  ++.|++...  +++-|-.++|.   |||..+++.
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g~--W~~I~~~~~~~~~~RT~~~lKd---rWrnllk~~   53 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKD---KWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSC--HHHHHHHHCTTCTTSCHHHHHH---HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCC--cHHHHHhhccccCCCCHHHHHH---HHHHHHHhc
Confidence            599999999999999999643  999998633  47889999996   677777654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=90.07  E-value=0.7  Score=38.55  Aligned_cols=56  Identities=20%  Similarity=0.246  Sum_probs=46.8

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHhhhhh
Q 020690          110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS--VDGLTRENVASHLQKYRLYLKR  170 (322)
Q Consensus       110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTrenVkSHLQKYRl~lkr  170 (322)
                      ..++.|-.||+|.-+..+++|+++|..+  ++.|++.+.  .++-|-.++|.   |||..+++
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~--W~~Ia~~~~~~f~~RT~v~lKd---RWrnllk~   69 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKD---KWKTLVHT   69 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGC--HHHHHHHHCSCCSSCCSHHHHH---HHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHhccccCCCCHHHHHH---HHHHHHhh
Confidence            4567889999999999999999999632  999999875  37889999985   67877775

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=89.94  E-value=1.3  Score=33.46  Aligned_cols=55  Identities=16%  Similarity=0.166  Sum_probs=44.7

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhC-CCCCCHHHHHHHhhhhHhhhhhhc
Q 020690          112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS-VDGLTRENVASHLQKYRLYLKRMQ  172 (322)
Q Consensus       112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~-V~GLTrenVkSHLQKYRl~lkr~~  172 (322)
                      .+.|-.||+|.-+..++.|+++|.   .++.|+.--. .++-|.-+||.   |||...|+..
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~---~W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~~   60 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN---HWNSILWSFPFQKGRRAVDLAH---KYHRLISGPS   60 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS---CHHHHHHHSCCCTTCCHHHHHH---HHHHHHTCSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH---hHHHHHHhCCCccCcccchHHH---HHHHHHhccc
Confidence            357888999999999999999996   4999996433 46779999985   8998877653

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=89.16  E-value=0.065  Score=41.63  Aligned_cols=50  Identities=12%  Similarity=0.074  Sum_probs=41.7

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhh
Q 020690          114 PRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYL  168 (322)
Q Consensus       114 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~l  168 (322)
                      .+-.||+|....|+++|..+|.+   +..|-+.|  +|-|..+|+.|-+.|...+
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~G~~---W~~IA~~l--~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEHGRN---WSAIARMV--GSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            34579999999999999999964   99998886  5779999999987775544

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=88.29  E-value=0.93  Score=35.00  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=37.9

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      +-.||+|..++++++|+.+|..  .++.|-+.|  +|-|..+++.+-++|
T Consensus         4 k~~WT~eED~~L~~~v~~~g~~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~   49 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGPK--RWSVIAKHL--KGRIGKQCRERWHNH   49 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCTT--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC--cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence            4579999999999999999964  399999888  477999998765554

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=87.87  E-value=1.2  Score=33.95  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=37.7

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 020690          113 RPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHL  161 (322)
Q Consensus       113 KpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHL  161 (322)
                      ..+-.||+|.-+..+++|+++|.+   ++.|-+.|   |-|-.+||.+-
T Consensus        21 i~k~~wT~EED~~L~~l~~~~G~k---W~~IA~~l---gRt~~q~knRw   63 (73)
T 2llk_A           21 NHVGKYTPEEIEKLKELRIKHGND---WATIGAAL---GRSASSVKDRC   63 (73)
T ss_dssp             CCCCSSCHHHHHHHHHHHHHHSSC---HHHHHHHH---TSCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC---HHHHHHHh---CCCHHHHHHHH
Confidence            345689999999999999999965   99999999   77999998764

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=87.39  E-value=1.3  Score=34.11  Aligned_cols=43  Identities=23%  Similarity=0.391  Sum_probs=37.0

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQ  162 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQ  162 (322)
                      +-.||+|....++++|.++|..   +..|-+.|  +|-|..+|+.|-.
T Consensus        56 ~~~Wt~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~rw~   98 (105)
T 1gv2_A           56 KTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAIKNHWN   98 (105)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSC---HHHHHTTC--TTCCHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHhCCC---HHHHHHHc--CCCCHHHHHHHHH
Confidence            4579999999999999999964   99998875  6889999998744

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=87.12  E-value=1.3  Score=35.61  Aligned_cols=48  Identities=19%  Similarity=0.212  Sum_probs=39.0

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      +..|-.||+|.-++.+++|++.|.   .++.|.+.|.  |-|..+++.+-.+|
T Consensus         8 ~~kk~~WT~eED~~L~~~v~~~G~---~W~~Ia~~~~--~Rt~~qcr~Rw~~~   55 (126)
T 3osg_A            8 AAKKQKFTPEEDEMLKRAVAQHGS---DWKMIAATFP--NRNARQCRDRWKNY   55 (126)
T ss_dssp             BCSSCCCCHHHHHHHHHHHHHHTT---CHHHHHHTCT--TCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CHHHHHHHcC--CCCHHHHHHHHhhh
Confidence            456778999999999999999996   4999998875  56888887655444

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=86.26  E-value=1.7  Score=34.89  Aligned_cols=54  Identities=15%  Similarity=0.278  Sum_probs=40.2

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhcCCCCC
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGG  177 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~~ls~~  177 (322)
                      +-.||+|..++++++|..+|..   +..|-+.|  +|-|..+|+.+   |+..+++ .+++..
T Consensus        62 ~~~WT~eEd~~L~~~v~~~G~~---W~~Ia~~l--~gRt~~~~k~r---w~~l~~k-~~~p~~  115 (126)
T 3osg_A           62 HTPWTAEEDALLVQKIQEYGRQ---WAIIAKFF--PGRTDIHIKNR---WVTISNK-LGIPQT  115 (126)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSC---HHHHHTTS--TTCCHHHHHHH---HHHHHHH-TTC---
T ss_pred             cccCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHH---HHHHHHh-cCCCCC
Confidence            3469999999999999999954   99998865  57899999987   4444444 344433

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=85.67  E-value=1.8  Score=33.75  Aligned_cols=47  Identities=19%  Similarity=0.215  Sum_probs=37.4

Q ss_pred             cccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690          116 LVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK  169 (322)
Q Consensus       116 l~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk  169 (322)
                      -.||+|.-++++++|+.+|..  .++.|-+.|+  +-|..+++.+   |+.+|.
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~--~W~~Ia~~~~--~Rt~~qcr~R---w~~~L~   48 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAK--DWIRISQLMI--TRNPRQCRER---WNNYIN   48 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSS--CHHHHHHHTT--TSCHHHHHHH---HHHHSS
T ss_pred             CCCCHHHHHHHHHHHHHHCCC--CHHHHhhhcC--CCCHHHHHHH---HHHHHc
Confidence            479999999999999999953  3999999986  6688888754   444443

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=85.23  E-value=2.2  Score=34.16  Aligned_cols=47  Identities=17%  Similarity=0.275  Sum_probs=38.2

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          114 PRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       114 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      .+-.||+|.-++++++|+.+|..+  ++.|.+.|+  |-|..+++.+-.+|
T Consensus        26 ~k~~Wt~eED~~L~~~v~~~g~~~--W~~Ia~~l~--~Rt~~qcr~Rw~~~   72 (128)
T 1h8a_C           26 NKGPWTKEEDQRVIEHVQKYGPKR--WSDIAKHLK--GRIGKQCRERWHNH   72 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCSCC--HHHHHHHSS--SCCHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHhc--CCcHHHHHHHHHHh
Confidence            456799999999999999999643  999999885  67999988655443

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=83.76  E-value=1.5  Score=35.08  Aligned_cols=44  Identities=25%  Similarity=0.380  Sum_probs=37.6

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhh
Q 020690          114 PRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQ  162 (322)
Q Consensus       114 pRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQ  162 (322)
                      .+-.||+|..+.++++|+++|.+   +..|-+.|  +|-|..+|+.|-.
T Consensus        78 ~~~~WT~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~r~~  121 (128)
T 1h8a_C           78 KKTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAVKNHWN  121 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCSC---HHHHGGGS--TTCCHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHHCcC---HHHHHHHC--CCCCHHHHHHHHH
Confidence            35679999999999999999964   99998876  6889999998743

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=83.12  E-value=3.2  Score=30.97  Aligned_cols=46  Identities=13%  Similarity=0.090  Sum_probs=35.1

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 020690          112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHL  161 (322)
Q Consensus       112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHL  161 (322)
                      ++..-.||+|.++.|.+++...|-+   -..|.+.| |+.-|..+|..+-
T Consensus         5 r~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v~fY   50 (70)
T 2crg_A            5 SSGMEEWSASEACLFEEALEKYGKD---FNDIRQDF-LPWKSLTSIIEYY   50 (70)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTCSC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCCHHHHHHHH
Confidence            3566789999999999999999965   78887621 4556888776543

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=82.24  E-value=0.51  Score=36.88  Aligned_cols=46  Identities=22%  Similarity=0.204  Sum_probs=35.1

Q ss_pred             cccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhh
Q 020690          116 LVWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQK  163 (322)
Q Consensus       116 l~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQK  163 (322)
                      -.||.+-.+.|..|+..+..+ .-.+.+|-+.+  +|-|.++|+.|-|-
T Consensus        21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V--pGKT~eEVk~hY~~   67 (74)
T 4eef_G           21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV--KGRTPEEVKKHYEL   67 (74)
T ss_dssp             -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS--CSSCHHHHHGGGC-
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc--CCCCHHHHHHHHHH
Confidence            359999999999999998732 33466775554  57899999998763

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=81.73  E-value=2.6  Score=32.42  Aligned_cols=46  Identities=11%  Similarity=0.114  Sum_probs=35.5

Q ss_pred             ccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          117 VWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      .||.+-.++|.+|+..++.+ .-.+.+|-+.+  +|-|.++|..|-+..
T Consensus        10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V--~gKT~eE~~~hY~~l   56 (73)
T 1wgx_A           10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAV--GSRSPEECQRKYMEN   56 (73)
T ss_dssp             CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT--TTSCHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            59999999999999999843 23467786665  467999998765543

>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1

Probab=81.36  E-value=4.7  Score=30.35  Aligned_cols=62  Identities=18%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             cCCCCCccccChHHHHHHHHHHHHhC--CCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690          109 RTLKRPRLVWTPQLHKRFVDAVAHLG--IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR  170 (322)
Q Consensus       109 ~~~kKpRl~WT~ELH~rFVeAV~qLG--~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr  170 (322)
                      ...||.|-..|.+--.......+.+|  ........+.++...-|||..+|+-=.|.-|.++++
T Consensus        15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~   78 (80)
T 1wh5_A           15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS   78 (80)
T ss_dssp             CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence            34577888899986666666667777  344455666677777799999999988888877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	2e-29

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  105 bits (263), Expect = 2e-29
 Identities = 37/60 (61%), Positives = 51/60 (85%)

Query: 112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 171
           K+PR++WT +LH +F+ AV HLG++ AVPK I+ LM+VD LTRENVASHLQK+R+ LK++
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.94
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	97.39
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	96.95
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	95.86
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	95.59
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	95.27
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	94.92
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	93.02
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	92.79
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	91.28
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	90.97
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	89.86
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	89.84
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	89.79
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	87.11
d1wh7a_	80	ZF-HD homeobox protein At4g24660 {Thale cress (Ara	81.05

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=4.9e-28  Score=181.73  Aligned_cols=62  Identities=60%  Similarity=1.025  Sum_probs=59.8

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhh
Q 020690          110 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM  171 (322)
Q Consensus       110 ~~kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~  171 (322)
                      ..||+|++||+|||++||+||++||.++|+||+|+++|+|++||++||+|||||||++++|+
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~   63 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            35899999999999999999999999999999999999999999999999999999999985

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00018  Score=50.72  Aligned_cols=51  Identities=22%  Similarity=0.265  Sum_probs=44.4

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKR  170 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr  170 (322)
                      .++||+|..+.|+++|..+|.+   +..|-++|+  +-|..+|++|.++|.....+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~---W~~Ia~~~~--~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRR---WTKISKLIG--SRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSC---HHHHHHHHS--SSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcch---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHh
Confidence            3679999999999999999954   999999886  56999999999998776554

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0009  Score=45.27  Aligned_cols=45  Identities=29%  Similarity=0.423  Sum_probs=40.1

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhH
Q 020690          117 VWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYR  165 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYR  165 (322)
                      .||.|...++++||++.|..+  ++.|-+.|+  +-|..|++.|-+||.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~n--W~~Ia~~~~--~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGN--WQDVANQMC--TKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTC--HHHHHHHHT--TSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCcc--HHHHHHHcC--CCCHHHHHHHHHHhC
Confidence            399999999999999999644  999999998  459999999999983

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0087  Score=42.00  Aligned_cols=52  Identities=17%  Similarity=0.269  Sum_probs=44.3

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhh
Q 020690          112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYL  168 (322)
Q Consensus       112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~l  168 (322)
                      +|..-.||++-...|++++..+|.+   ...|-++|+  +-|..+|+.+-.+|+..+
T Consensus         2 ~k~~~~WT~eE~~~f~~~~~~~G~~---w~~Ia~~~~--~kt~~q~~~~y~~~~k~~   53 (65)
T d2iw5b1           2 QKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIG--NKSVVQVKNFFVNYRRRF   53 (65)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHHHS--SCCHHHHHHHHHHTTTTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCch---HHHHHHHcC--CCCHHHHHHHHHHHHhhc
Confidence            3556679999999999999999965   999999985  669999999998876543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=95.59  E-value=0.015  Score=40.83  Aligned_cols=54  Identities=20%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             ccChHHHHHHHHHHHHhCCC-CCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhhhhc
Q 020690          117 VWTPQLHKRFVDAVAHLGIK-NAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQ  172 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qLG~d-kAtPK~ILelM~V~GLTrenVkSHLQKYRl~lkr~~  172 (322)
                      .||+|..++|++||+.+|.+ ...+++|-+.|.  |-|..+|+.|-++....++++.
T Consensus         3 ~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~--gRt~~qc~~r~~~L~~dik~ie   57 (63)
T d2cjja1           3 PWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYEILVEDIKYIE   57 (63)
T ss_dssp             SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhccc
Confidence            49999999999999999953 346999999886  6699999999876655566543

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.27  E-value=0.02  Score=38.55  Aligned_cols=46  Identities=20%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      |-.||+|..++.+++|++.|..+  ++.|-+.|+  |-|-.|++.+-++|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~--W~~Ia~~~~--~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDD--WKVIANYLP--NRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSC--HHHHHHTST--TCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHC--CCCHHHHHHHHHhh
Confidence            35799999999999999999643  999999884  67999999876665

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.013  Score=41.49  Aligned_cols=46  Identities=11%  Similarity=0.120  Sum_probs=38.4

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhh
Q 020690          112 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQ  162 (322)
Q Consensus       112 kKpRl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQ  162 (322)
                      ++..-.||+|....|++||.+.|-+   .+.|-++|  ++-|..+|+.|-.
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G~~---w~~Ia~~~--~~rt~~q~~~~yy   59 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHPKN---FGLIASFL--ERKTVAECVLYYY   59 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTTSC---SSSHHHHT--TTSCHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHCCc---HHHHHHHc--CCCCHHHHHHHHH
Confidence            3455679999999999999999954   88898876  5779999999853

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.15  Score=34.82  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=41.3

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK  169 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk  169 (322)
                      |-.||+|.-++.+++|++.|..+  ++.|.+.+...+-|..+++-   +||..++
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~~--W~~I~~~~~~~~Rt~~q~k~---Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIKD---RWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCh--HHHHHhhcCCCCcCHHHHHH---HHHHHhc
Confidence            45799999999999999999643  99999987777788888874   5666555

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.088  Score=36.23  Aligned_cols=49  Identities=12%  Similarity=0.163  Sum_probs=37.9

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCC-CChHHHHHhhCCCCCCHHHHHHHhh
Q 020690          112 KRPRLVWTPQLHKRFVDAVAHLGIKN-AVPKTIMQLMSVDGLTRENVASHLQ  162 (322)
Q Consensus       112 kKpRl~WT~ELH~rFVeAV~qLG~dk-AtPK~ILelM~V~GLTrenVkSHLQ  162 (322)
                      +..+-.||+|..+.|++||..+|... -.+++|-+.|  +|-|..++..|-+
T Consensus         9 ~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l--~~Rt~~qc~~R~~   58 (60)
T d2cqra1           9 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYK   58 (60)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHc--CCCCHHHHHHHHH
Confidence            34455799999999999999999532 2378897766  4789999987654

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.28  E-value=0.21  Score=33.76  Aligned_cols=46  Identities=17%  Similarity=0.282  Sum_probs=39.1

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      |-.||+|.-++-+++|++.|..+  ++.|-+.|+  +-|-.|++.+-++|
T Consensus         3 rg~WT~eED~~L~~~v~~~g~~~--W~~Ia~~l~--~Rt~~qc~~Rw~~~   48 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGPKR--WSVIAKHLK--GRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTC--HHHHHTTST--TCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHC--CCCHHHHHHHHHhh
Confidence            44699999999999999999644  999998885  67999999876665

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.38  Score=32.32  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=37.5

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHh
Q 020690          115 RLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHL  161 (322)
Q Consensus       115 Rl~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHL  161 (322)
                      |-.||+|.-...+++|++.|..+  ++.|.+.....+-|..+++-.-
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~~--W~~I~~~~~~~~Rt~~q~r~Rw   46 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEGN--WSKILLHYKFNNRTSVMLKDRW   46 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC--HHHHHhhcCCCCCCHHHHHHHH
Confidence            34699999999999999999643  9999988777778999887543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.86  E-value=0.37  Score=33.12  Aligned_cols=43  Identities=14%  Similarity=0.120  Sum_probs=35.0

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhh
Q 020690          117 VWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK  163 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQK  163 (322)
                      .||+|.++.|++++.+.|-+   -..|-+.| |++-|..+|.+|--.
T Consensus         3 ~WT~eE~~~F~~~~~~yGKd---f~~I~~~~-v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKD---FNDIRQDF-LPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSC---HHHHHHTT-CSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccc---HHHHHHHH-cCCCCHHHHHHHHHH
Confidence            59999999999999999965   78887644 345699999988533

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.84  E-value=0.31  Score=34.40  Aligned_cols=50  Identities=8%  Similarity=0.119  Sum_probs=41.0

Q ss_pred             ccChHHHHHHHHHHHHhCC-CCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690          117 VWTPQLHKRFVDAVAHLGI-KNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK  169 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qLG~-dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk  169 (322)
                      .||.+-.+.|..|+..+-. ..-.+.+|-+.||   -|.++|..+.++.+..+.
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg---kt~~ev~~~~k~l~e~~~   53 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG---RSVTDVTTKAKQLKDSVT   53 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT---SCHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC---CCHHHHHHHHHHHHHhcc
Confidence            6999999999999999963 3456889999994   699999988877766543

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.79  E-value=0.32  Score=32.28  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=36.9

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCChHHHHHhhCCCCCCHHHHHHHhhhh
Q 020690          117 VWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY  164 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~V~GLTrenVkSHLQKY  164 (322)
                      .||+|.-+.++++|+++|-+   +..|-+.|  +|-|-.+|+.+-..+
T Consensus         3 ~WT~eED~~L~~~v~~~G~~---W~~Ia~~~--~gRt~~~~knr~~~~   45 (47)
T d1gv2a2           3 SWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAIKNHWNST   45 (47)
T ss_dssp             CCCHHHHHHHHHHHHHHSSC---HHHHHTTC--TTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhH---HHHHHhHc--CCCCHHHHHHHHHHH
Confidence            59999999999999999964   99998875  688999999876543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=87.11  E-value=0.79  Score=33.26  Aligned_cols=49  Identities=18%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCChHHHHHhhC--CCCCCHHHHHHHhhhhHhhhhh
Q 020690          117 VWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMS--VDGLTRENVASHLQKYRLYLKR  170 (322)
Q Consensus       117 ~WT~ELH~rFVeAV~qLG~dkAtPK~ILelM~--V~GLTrenVkSHLQKYRl~lkr  170 (322)
                      .||.|.-++.+++|+.+|..+  +..|.+.|.  ..+-|..+++   .|||.+|+.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~--W~~I~~~~~~~~~~Rt~~qck---~RWrn~l~~   52 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLK---DKWKTLVHT   52 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSC--HHHHHHHHCTTCTTSCHHHHH---HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCccc--HHHHHHHHHhhccCCCHHHHH---HHHHHHhhh
Confidence            499999999999999999643  999999885  5678888887   478887764

>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: ZF-HD homeobox protein At4g24660
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.05  E-value=2  Score=30.97  Aligned_cols=60  Identities=17%  Similarity=0.205  Sum_probs=46.7

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCC--CCCChHHHHHhhCCCCCCHHHHHHHhhhhHhhhh
Q 020690          110 TLKRPRLVWTPQLHKRFVDAVAHLGI--KNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK  169 (322)
Q Consensus       110 ~~kKpRl~WT~ELH~rFVeAV~qLG~--dkAtPK~ILelM~V~GLTrenVkSHLQKYRl~lk  169 (322)
                      ..||.|.++|++--+..-+.+++++.  .+-....|.+|...-||+..+|+.=.|.-|...|
T Consensus        16 ~~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R~~~k   77 (80)
T d1wh7a_          16 TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP   77 (80)
T ss_dssp             CSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred             CCCCccccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHHHHHCCCHHHeeeecccCcCCCC
Confidence            34688999999888888788888873  3445567788888889999999998888765444