Citrus Sinensis ID: 020693

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MGAGDNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mgagdnddmgfqprnesamncssgmmpqklpgmqmnsvpmyksvsgpdhfygsgwepivslnqgesfgvssmvshnefapsypvalenqgmsstsnldqyssdpsfvelvpkipgfgsgnfSEMVssfglpenaqiassgcppnyvpnkegcyernsrnvsqsyeDHQICEEAAIgvatngktrkrapesnsllntdknvevelqkdpsgdssgilkeqdEKKQKIEQNtganmrgkqaakptkdsslsgeapkEYIHMRAkrgqatnshsLAERVRREKISERMRLLQELVpgcnkitgkaVMLDEIINYVQSLQQQVEVL
Flexible Loop (DISEMBL)
mgagdnddmgfqprneSAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAaigvatngktrkrapesnsllntdknvevelqkdpsgdssgilkeqdekkqkieqntganmrgkqaakptkdsslsgeAPKEYIHMRakrgqatnshslaeRVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSlqqqvevl
Low Complexity Region (SEG)
MGAGDNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILkeqdekkqkieqNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL
Disordered region (IsUnstruct)
************************************************HFYGSGWEPIVSLNQ*********************************************LVPKIPGF****************************************************IC****I*************************************************************************************************************MRLLQELVPGCNKITGKAVMLDEIINYVQSL*******
Disordered Region (DISOPRED)
**************************************************************************************************************************************************************************************************************************************************************************************EKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL
Disordered Region (DISEMBL)
********MGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTG*******************EAPKEYIHMR**************RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQS********
Disordered Region (DISPRO)
***************************************MYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPN************************************************************************************************************PKEYIHMRAKRGQ****HSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGAGDNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
Q6NKN9	366	Transcription factor bHLH	yes	no	0.729	0.642	0.454	4e-43
Q9C670	390	Transcription factor bHLH	no	no	0.639	0.528	0.408	1e-34
Q9CAA9	486	Transcription factor bHLH	no	no	0.645	0.427	0.385	1e-33
Q9SRT2	456	Transcription factor bHLH	no	no	0.357	0.252	0.559	7e-32
Q9LK48	371	Transcription factor bHLH	no	no	0.245	0.212	0.810	8e-32
Q9FJL4	498	Transcription factor bHLH	no	no	0.223	0.144	0.833	5e-31
Q93W88	286	Transcription factor bHLH	no	no	0.307	0.346	0.623	7e-30
Q0JXE7	343	Transcription factor BPE	no	no	0.326	0.306	0.580	2e-29
Q8GY61	335	Transcription factor bHLH	no	no	0.450	0.432	0.448	6e-29
Q9ZPW3	337	Transcription factor bHLH	no	no	0.599	0.572	0.415	8e-29

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 134/295 (45%), Positives = 174/295 (58%), Gaps = 60/295 (20%)

Query: 35  MNSVPMYKSVSGPDHFYGSG-WEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSS 93
           + S+P+Y      D F+ S  W+P+V+         ++  S + + PS  +A++N GMS 
Sbjct: 28  ITSMPLYAKA---DPFFSSADWDPVVN-------AAAAGFSSSHYHPS--MAMDNPGMSC 75

Query: 94  TSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSS---FGLPENAQIASSGCPPNYV-PNK 149
            S+                 PG  SG  ++M +S   FG     QI       +++  +K
Sbjct: 76  FSHYQ---------------PGSVSGFAADMPASLLPFGDCGGGQIG------HFLGSDK 114

Query: 150 EGCYERNSRNVSQSYEDH-QICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDP 208
           +G  ER  R    S+EDH Q+ ++A +G +  GK  +R PE+ S  N  K VE E Q+DP
Sbjct: 115 KG--ERLIRAGESSHEDHHQVSDDAVLGASPVGK--RRLPEAESQWNK-KAVE-EFQEDP 168

Query: 209 SGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQAT 267
              +     +Q +KK K +Q+       K+     K+SS S EAPKE YIHMRA+RGQAT
Sbjct: 169 QRGN-----DQSQKKHKNDQS-------KETV--NKESSQSEEAPKENYIHMRARRGQAT 214

Query: 268 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE L
Sbjct: 215 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFL 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/235 (40%), Positives = 126/235 (53%), Gaps = 29/235 (12%)

Query: 96  NLDQYSSDPSFVELVPKIPGFGSGNF--SEMVSSFGLPENAQI------ASSGCPPNYVP 147
           N+ Q+ +D  F+E   K   FG G    ++  SS G+P++  +        SG   +  P
Sbjct: 73  NMAQFPADSGFIERAAKFSFFGCGEMMMNQQQSSLGVPDSTGLFLQDTQIPSGSKLDNGP 132

Query: 148 NKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKD 207
             +       R+++   ED Q         A  G+T  +   S       K+ E      
Sbjct: 133 LTDASKLVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCE------ 186

Query: 208 PSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQAT 267
                     E+++KKQK EQ+  +N     + K   DS   G     YIHMRA+RGQAT
Sbjct: 187 ----------EEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDG-----YIHMRARRGQAT 231

Query: 268 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           NSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYVQSLQ Q+E L
Sbjct: 232 NSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFL 286

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/262 (38%), Positives = 137/262 (52%), Gaps = 54/262 (20%)

Query: 97  LDQYSSDPSFVELVPKIPGFGSGNFSEMVSS-FGLPENAQIASSGCPPNYVPNKEGCYER 155
           + Q+ +D  F+E   +   F  GNFS+MV+   G  E   +   G         +G  + 
Sbjct: 123 MAQFPADSGFIERAARFSLFSGGNFSDMVNQPLGNSEAIGLFLQGG-----GTMQGQCQS 177

Query: 156 NSRNVSQSYEDHQIC---------EEAAIGV-----------------------ATNGKT 183
           N  NV + + D  +          E+A   V                       ++N K 
Sbjct: 178 NELNVGEPHNDVSVAVKESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQKGRETSSNTKK 237

Query: 184 RKRAPESNS-LLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKI--EQNTGANMRGKQAA 240
           RKR  + NS    + ++ + E + D +GD     K  DE+      +++     +GKQ++
Sbjct: 238 RKRNGQKNSEAAQSHRSQQSEEEPDNNGDE----KRNDEQSPNSPGKKSNSGKQQGKQSS 293

Query: 241 KPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITG 300
            P KD          YIH+RA+RGQATNSHSLAERVRREKISERM+ LQ+LVPGCNK+TG
Sbjct: 294 DPPKDG---------YIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTG 344

Query: 301 KAVMLDEIINYVQSLQQQVEVL 322
           KAVMLDEIINYVQSLQ+QVE L
Sbjct: 345 KAVMLDEIINYVQSLQRQVEFL 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  138 bits (347), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 93/127 (73%), Gaps = 12/127 (9%)

Query: 208 PSGDSSGILKEQDEKKQK------------IEQNTGANMRGKQAAKPTKDSSLSGEAPKE 255
           P+G+SSG L  + + K K            IE+   ++ +  + ++   D + S +  K+
Sbjct: 195 PAGESSGELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKD 254

Query: 256 YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSL 315
           YIH+RA+RGQAT+SHSLAERVRREKISERM+LLQ+LVPGCNK+TGKA+MLDEIINYVQSL
Sbjct: 255 YIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSL 314

Query: 316 QQQVEVL 322
           Q+QVE L
Sbjct: 315 QRQVEFL 321

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  137 bits (346), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 72/79 (91%)

Query: 244 KDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAV 303
           KD +   EAPK+YIH+RA+RGQAT+SHSLAER RREKISERM LLQ+LVPGCN+ITGKAV
Sbjct: 176 KDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAV 235

Query: 304 MLDEIINYVQSLQQQVEVL 322
           MLDEIINYVQSLQ+QVE L
Sbjct: 236 MLDEIINYVQSLQRQVEFL 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score =  135 bits (339), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 69/72 (95%)

Query: 251 EAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIIN 310
           E PK+YIH+RA+RGQAT+SHSLAERVRREKI ERM+LLQ+LVPGCNK+TGKA+MLDEIIN
Sbjct: 293 EPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIIN 352

Query: 311 YVQSLQQQVEVL 322
           YVQSLQ+QVE L
Sbjct: 353 YVQSLQRQVEFL 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 79/101 (78%), Gaps = 2/101 (1%)

Query: 222 KKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKI 281
           +K +   N+   + G+++ K  + S    E P +YIH+RA+RGQAT+SHSLAERVRREKI
Sbjct: 101 RKARNSNNSKEGVEGRKSKKQKRGSK--EEPPTDYIHVRARRGQATDSHSLAERVRREKI 158

Query: 282 SERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           SERMR LQ LVPGC+K+TGKA+MLDEIINYVQ+LQ QVE L
Sbjct: 159 SERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFL 199

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 79/105 (75%)

Query: 218 EQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVR 277
           E + K+QKI++        +     T+      E  K+YIH+RA+RGQAT+SHSLAER R
Sbjct: 95  EGENKRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERAR 154

Query: 278 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           REKISERM++LQ+LVPGCNK+ GKA++LDEIINY+QSLQ+QVE L
Sbjct: 155 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 199

Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score =  128 bits (322), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 109/165 (66%), Gaps = 20/165 (12%)

Query: 169 ICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKI-E 227
           I  E  +G    G  +KR  ++ +    +K  ++ + +D       +++E +E+K KI E
Sbjct: 80  ISPETTLGT---GNFKKRKFDTETKDCNEKKKKMTMNRD------DLVEEGEEEKSKITE 130

Query: 228 QNTGAN--MRGKQAAKPTKDSSLSGEAPK--------EYIHMRAKRGQATNSHSLAERVR 277
           QN G+   ++  +     ++++ S ++ K        +YIH+RA+RGQAT+SHS+AERVR
Sbjct: 131 QNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVR 190

Query: 278 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           REKISERM+ LQ+LVPGC+KITGKA MLDEIINYVQSLQ+Q+E L
Sbjct: 191 REKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFL 235

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3

 Score =  127 bits (320), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/224 (41%), Positives = 124/224 (55%), Gaps = 31/224 (13%)

Query: 108 ELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDH 167
           EL+  +   GS N   + SSF      Q+  SG  PNY       +E  SR  S   E  
Sbjct: 47  ELLQILQFHGSNNDELLESSFS---QFQMLGSGFGPNYNMGFGPPHESISRTSSCHMEPV 103

Query: 168 QICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIE 227
              E   + + T  +TR  A      L   +  EV+ +++          ++ EKK K+E
Sbjct: 104 DTME---VLLKTGEETRAVA------LKNKRKPEVKTREE----------QKTEKKIKVE 144

Query: 228 QNTGANMRGKQAAKPTKDSS-LSGEAPK--------EYIHMRAKRGQATNSHSLAERVRR 278
             T ++M+GK     T+ SS  S E  K        +YIH+RA+RGQAT+ HSLAER RR
Sbjct: 145 AETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARR 204

Query: 279 EKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           EKIS++M+ LQ++VPGCNK+TGKA MLDEIINYVQ LQ+QVE L
Sbjct: 205 EKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFL 248

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
225458914	430	PREDICTED: transcription factor bHLH74 [	0.996	0.746	0.632	1e-103
255537964	408	DNA binding protein, putative [Ricinus c	0.922	0.727	0.612	2e-97
224081861	407	predicted protein [Populus trichocarpa]	0.925	0.732	0.608	1e-95
147818198	484	hypothetical protein VITISV_034133 [Viti	0.928	0.617	0.568	6e-86
224067162	330	predicted protein [Populus trichocarpa]	0.698	0.681	0.684	6e-80
356552284	429	PREDICTED: transcription factor bHLH74-l	0.975	0.731	0.540	3e-75
125664136	400	basic helix-loop-helix protein [Sesamum	0.888	0.715	0.533	6e-75
356577684	435	PREDICTED: transcription factor bHLH74-l	0.984	0.728	0.537	1e-74
449509268	402	PREDICTED: transcription factor bHLH74-l	0.891	0.713	0.524	2e-70
359494803	415	PREDICTED: transcription factor bHLH74-l	0.925	0.718	0.463	7e-62

>gi|225458914|ref|XP_002285475.1| PREDICTED: transcription factor bHLH74 [Vitis vinifera] gi|302142156|emb|CBI19359.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/329 (63%), Positives = 249/329 (75%), Gaps = 8/329 (2%)

Query: 1   MGAGDNDDMGFQPRNESAMNC-SSGM----MPQKLPGMQMNSVPMYKSVSGPDHFYGSGW 55
           MG  DN +MGF   ++S +NC SSGM    + +K+ GM M+S  MYKS +G D F+GSGW
Sbjct: 1   MGIDDNGNMGFPNTSQSILNCPSSGMNTHPISEKVTGMTMSSASMYKSSNGGDPFFGSGW 60

Query: 56  EPIVSLNQGESFGVSSMVSHNEFAPS-YPVALENQGMSSTSNLDQYSSDPSFVELVPKIP 114
           +PIVSL+Q E+FG SSMVSH+EFA S YPV LENQG+ ST +L  Y S+ S VE+VPK+P
Sbjct: 61  DPIVSLSQNENFGGSSMVSHSEFANSAYPVVLENQGIGSTPHLVLYPSNSSLVEMVPKLP 120

Query: 115 GFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAA 174
            FGSG+FSEMV+SFGLPE  Q A+SGCPPN+ PNKEG  E+ S N +QS E HQI E  A
Sbjct: 121 CFGSGSFSEMVASFGLPECGQTANSGCPPNFPPNKEGLTEK-SLNGAQSQEGHQISEGDA 179

Query: 175 IGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANM 234
           +  + +GK RK + +    LNT K+ + E  K    ++S   KEQ+EKK KI+QN   N+
Sbjct: 180 VDASPSGKRRKSSFDPRPPLNTSKSADGEQPKGLPWENSEFSKEQEEKKLKIDQNMSPNL 239

Query: 235 RGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVP 293
           RGKQ  K  KD+S +GEAPKE YIH+RA+RGQATNSHSLAERVRREKISERMRLLQELVP
Sbjct: 240 RGKQPNKHAKDNSSNGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVP 299

Query: 294 GCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           GCNKITGKAVMLDEIINYVQSLQQQVE L
Sbjct: 300 GCNKITGKAVMLDEIINYVQSLQQQVEFL 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537964|ref|XP_002510047.1| DNA binding protein, putative [Ricinus communis] gi|223550748|gb|EEF52234.1| DNA binding protein, putative [Ricinus communis]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 232/320 (72%), Gaps = 23/320 (7%)

Query: 5   DNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQG 64
           +N+ M FQ   ES MNC S        GM  N             F+   W+P+VSLNQ 
Sbjct: 7   NNEGMAFQSGGESVMNCQSS-------GMSANP------------FFPPAWDPVVSLNQH 47

Query: 65  ESFGVSSMVSHNEFAPS-YPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSE 123
           E+FG +SMVS +EF  S Y + +ENQG++S+S+L  Y SD S+VELVPK P +GSG+FSE
Sbjct: 48  ENFG-ASMVSQSEFTNSHYAIVMENQGINSSSHLVHYQSDSSYVELVPKFPSYGSGSFSE 106

Query: 124 MVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKT 183
           MVSSFGL +  QI++SGC PNY  N     ER   N + S EDHQ+ EE  +GV+ +GK 
Sbjct: 107 MVSSFGLTDCGQISNSGCHPNYTSNSAANNERTITNSALSQEDHQLSEEPVVGVSPDGKR 166

Query: 184 RKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPT 243
           RKR  E +S  + +KN E E+ KDPSG+SS I KEQDEKK + EQNT AN+RGKQAAK  
Sbjct: 167 RKRLAEPSSPFDPNKNAE-EMHKDPSGNSSDIPKEQDEKKSRTEQNTAANLRGKQAAKQA 225

Query: 244 KDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKA 302
           K++S SGEAPKE YIH+RA+RGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKA
Sbjct: 226 KENSHSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKA 285

Query: 303 VMLDEIINYVQSLQQQVEVL 322
           VMLDEIINYVQSLQQQVE L
Sbjct: 286 VMLDEIINYVQSLQQQVEFL 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081861|ref|XP_002306505.1| predicted protein [Populus trichocarpa] gi|222855954|gb|EEE93501.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 197/324 (60%), Positives = 229/324 (70%), Gaps = 26/324 (8%)

Query: 2   GAGDND-DMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVS 60
           G+GDN+ D+G+Q R ES M C         P   MN+ P          FY S W+P+VS
Sbjct: 3   GSGDNNGDLGYQNRVESVMKC---------PSSGMNTNP----------FYVSAWDPVVS 43

Query: 61  LNQGESFGVSSMVSHNEFAPS-YPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSG 119
           L+Q  +FG SS  S +EF+ S +P+ +EN G+S+T +L  Y SD  FVELVPK PGFGSG
Sbjct: 44  LSQLGNFGGSSTGSQSEFSNSPFPIVMENPGISNTCHLVHYPSDSGFVELVPKFPGFGSG 103

Query: 120 NFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVAT 179
           NFSEMV S GL E  QI ++GCPPNY   KE   E  +   +Q  ED Q+ EE  IG   
Sbjct: 104 NFSEMVGSVGLTECGQIVNAGCPPNY---KEANNESTAHG-AQREEDQQLSEETTIGALP 159

Query: 180 NGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQA 239
           NGK R+   ESNS  + +KN E E QKDPSG+SS I KE DEKKQKIEQN  AN+RGKQ 
Sbjct: 160 NGKRRRLVAESNSPFDPNKNAEGEFQKDPSGESSDIAKELDEKKQKIEQNCSANLRGKQV 219

Query: 240 AKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKI 298
           AK  KD+  SGEAPK+ YIH+RA+RGQATNSHSLAERVRREKISERMR+LQELVPGCNKI
Sbjct: 220 AKQAKDNPQSGEAPKDDYIHVRARRGQATNSHSLAERVRREKISERMRMLQELVPGCNKI 279

Query: 299 TGKAVMLDEIINYVQSLQQQVEVL 322
           TGKAVMLDEIINYVQSLQQQVE L
Sbjct: 280 TGKAVMLDEIINYVQSLQQQVEFL 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818198|emb|CAN60403.1| hypothetical protein VITISV_034133 [Vitis vinifera]

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 228/329 (69%), Gaps = 30/329 (9%)

Query: 1   MGAGDNDDMGFQPRNESAMNC-SSGM----MPQKLPGMQMNSVPMYKSVSGPDHFYGSGW 55
           MG  DN +MGF   ++S +NC SSGM    + +K+ GM M+S  MYKS +G D F+GSGW
Sbjct: 1   MGIDDNGNMGFPNTSQSILNCPSSGMNTHPISEKVTGMTMSSASMYKSSNGGDPFFGSGW 60

Query: 56  EPIVSLNQGESFGVSSMVSHNEFAPS-YPVALENQGMSSTSNLDQYSSDPSFVELVPKIP 114
           +PIVSL+Q E+FG SSMVSH+EFA S YPV LENQG+ ST +L  Y S+ S VE+VPK+P
Sbjct: 61  DPIVSLSQNENFGGSSMVSHSEFANSAYPVVLENQGIGSTPHLVLYPSNSSLVEMVPKLP 120

Query: 115 GFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAA 174
            FGSG+FSEMV+SFGLPE  Q A+SGCPPN+ PNKEG  E+ S N +QS E HQI E  A
Sbjct: 121 CFGSGSFSEMVASFGLPECGQTANSGCPPNFPPNKEGLTEK-SLNGAQSQEGHQISEGDA 179

Query: 175 IGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANM 234
           +  + +GK RK + +    LNT K+ + E  K    ++S   KEQ+EKKQKI+QN   N+
Sbjct: 180 VDASPSGKRRKSSFDPRPPLNTSKSADGEQPKGLPWENSEFSKEQEEKKQKIDQNMSPNL 239

Query: 235 RGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVP 293
           RGKQ  K  KD+S +GEAPKE YIH+RA+RGQATNSHSLAER                  
Sbjct: 240 RGKQPNKHAKDNSSNGEAPKENYIHVRARRGQATNSHSLAER------------------ 281

Query: 294 GCNKITGKAVMLDEIINYVQSLQQQVEVL 322
               ITGKAVMLDEIINYVQSLQQQVE L
Sbjct: 282 ----ITGKAVMLDEIINYVQSLQQQVEFL 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067162|ref|XP_002302386.1| predicted protein [Populus trichocarpa] gi|222844112|gb|EEE81659.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (776), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 163/238 (68%), Positives = 179/238 (75%), Gaps = 13/238 (5%)

Query: 86  LENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNY 145
           +EN G+S   NL  Y S   FVELVPK PGFGSGNFSEMV S GL E  QI  +GCPPNY
Sbjct: 1   MENPGIS---NLVHYPSGSGFVELVPKFPGFGSGNFSEMVGSLGLTECGQITHTGCPPNY 57

Query: 146 VPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQ 205
             NKE        N +Q  ED Q+ EE +IG + NGK RKR PESNS L+ +KN E EL+
Sbjct: 58  --NKEA-------NNAQHQEDQQLSEETSIGASPNGKRRKRVPESNSPLDPNKNTEGELR 108

Query: 206 KDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRG 264
           KD SG+S  I KE DEK QK EQN G N+RGKQAAK  KD + SGE PKE Y H+RA+RG
Sbjct: 109 KDLSGESCDIAKELDEKTQKTEQNPGPNLRGKQAAKQAKDDTQSGEVPKENYFHVRARRG 168

Query: 265 QATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           QATNSHSLAERVRREKISERMR+LQELVPGCNKITGKAVMLDEIINYVQSLQQQVE L
Sbjct: 169 QATNSHSLAERVRREKISERMRMLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFL 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552284|ref|XP_003544498.1| PREDICTED: transcription factor bHLH74-like [Glycine max]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 179/331 (54%), Positives = 222/331 (67%), Gaps = 17/331 (5%)

Query: 3   AGDNDDMGFQPRNESAMNC-SSGMMPQKL--PGMQMNSVPMYKSVSGPDHFYGS-GWEPI 58
            G  + MGFQ  NES + C +SG+    +    M ++SV + K     + F  S  W+P+
Sbjct: 2   GGQENAMGFQHGNESILTCPTSGLSGANVNVSEMAISSVSIAKPSDVVNPFIASSAWDPL 61

Query: 59  VSLNQGESFGVSSMVSHNEFA---PSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPG 115
           VSL+Q +SFG SSMVSH+EFA    SYP+ L+NQG+S+TS+L QY SD +   +VPK+  
Sbjct: 62  VSLSQVQSFGGSSMVSHSEFANSNSSYPLVLDNQGISNTSHLVQYMSDSNLGGMVPKVHS 121

Query: 116 FGSGNFSEMVS--SFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEA 173
           + SG FSEMV   SF    +A +A++G P +Y P KE        N  QS  +  I EE 
Sbjct: 122 YASGGFSEMVGAGSFCQHRSADMANTGYPIHYNPIKEAPI-----NGEQSQVEDSIPEEE 176

Query: 174 AIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGAN 233
           A G A +G  RKR  + NS  + +KN E +   D  G +S   KE  EK+ K EQN GA+
Sbjct: 177 APGSAPSGNRRKRGLDHNSTFSPNKNAEGDAVNDSPGKASNGPKEH-EKRPKGEQNNGAD 235

Query: 234 MRGKQAAKPTKDS-SLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQEL 291
           +RGKQ+ K  KD+ S SGEAPKE +IH+RA+RGQATNSHSLAERVRREKISERMRLLQEL
Sbjct: 236 VRGKQSVKQAKDNNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQEL 295

Query: 292 VPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           VPGCNKITGKAVMLDEIINYVQSLQQQVE L
Sbjct: 296 VPGCNKITGKAVMLDEIINYVQSLQQQVEFL 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125664136|gb|ABN51065.1| basic helix-loop-helix protein [Sesamum indicum]

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 173/324 (53%), Positives = 208/324 (64%), Gaps = 38/324 (11%)

Query: 8   DMGFQPRNESA-MNCSSGMMP-----QKLPGMQMNSVPMYKSVSGPDHFYGS-GWEPIVS 60
           D  FQ RN S+ +NC S +M        + GM + S  M+K  +G D FY S GW+P++S
Sbjct: 3   DRVFQHRNSSSILNCPSSVMATTSISDNVAGMSICSESMFKPPNGIDPFYSSSGWDPVIS 62

Query: 61  LNQGESFGVSSMVSHNEFA-PSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSG 119
            +Q  +FG SSMV  NEFA P+YPV LENQ M S+S+L  + SD   V +VPKIP FGSG
Sbjct: 63  QDQSGNFGNSSMVLQNEFANPNYPVLLENQTMGSSSHLVHFPSDSGLVGMVPKIPSFGSG 122

Query: 120 NFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVAT 179
           +FSE+VSSFG              N+  N     +   +NV  + +  Q  E   +G + 
Sbjct: 123 SFSEIVSSFG------------HSNFAQNNGAGVQNTVKNVEDAQDHRQDSENGVLGASP 170

Query: 180 NGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQA 239
           NGK RKR           KNVEVE QKD + D + + KE DEKK     N+G + R +QA
Sbjct: 171 NGK-RKR-----------KNVEVEKQKDQTRDLAELPKEYDEKK-----NSGPSSRSRQA 213

Query: 240 AKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKI 298
            K  KD+S   EA KE YIH+RAKRGQATNSHSLAERVRRE+ISERMRLLQELVPGCNKI
Sbjct: 214 VKEAKDNSSGAEASKENYIHVRAKRGQATNSHSLAERVRRERISERMRLLQELVPGCNKI 273

Query: 299 TGKAVMLDEIINYVQSLQQQVEVL 322
           TGKAVMLDEIINYVQSLQQQVE L
Sbjct: 274 TGKAVMLDEIINYVQSLQQQVEFL 297

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577684|ref|XP_003556954.1| PREDICTED: transcription factor bHLH74-like [Glycine max]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 181/337 (53%), Positives = 223/337 (66%), Gaps = 20/337 (5%)

Query: 1   MGAGDNDDMGFQPRNESAMNC--SSGMM-PQ-KLPGMQMNSVPMYK--SVSGPDHFYGSG 54
           MG  +N   GFQ  NES + C  +SG+  P   +  M ++SV M K  +V        S 
Sbjct: 1   MGGQENAMGGFQHGNESILTCPPTSGLSGPNVNVSEMAISSVSMAKPSNVVANPFLASST 60

Query: 55  WEPIVSLNQGESFGVSSMVSHNEFA---PSYPVALENQG-MSSTSNLDQYSSDPSFVELV 110
           W+P+VSL+Q ++FG SSMVSHNEF     SYP+ L+NQG +S+TS+L QY SD +   +V
Sbjct: 61  WDPLVSLSQAQTFGGSSMVSHNEFVNANSSYPLVLDNQGGISNTSHLVQYMSDSNLGGIV 120

Query: 111 PKIPGFGSGNFSEMVSS--FGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQ 168
           PK+  + SG FSEMV S  F    +  +A +G P +Y P KE        N  QS  +  
Sbjct: 121 PKVHSYASGGFSEMVGSGSFCQHGSGDMADTGYPTHYNPIKEAPI----INGEQSQVEDS 176

Query: 169 ICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQ 228
           I EE A G A +G  RKR  + NS  + +KN E +  KD  G +S   KE  EK+ K+EQ
Sbjct: 177 IPEEEAPGSAPSGNRRKRGLDHNSTFSPNKNAEGDAVKDSPGKASDGSKEH-EKRPKVEQ 235

Query: 229 NTGANMRGKQAAKPTKDS--SLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERM 285
           N GA++RGKQ+ K  KD+  S SGEAPKE +IH+RA+RGQATNSHSLAERVRREKISERM
Sbjct: 236 NNGADVRGKQSVKQAKDNNNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERM 295

Query: 286 RLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           RLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE L
Sbjct: 296 RLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFL 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509268|ref|XP_004163540.1| PREDICTED: transcription factor bHLH74-like [Cucumis sativus]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 173/330 (52%), Positives = 210/330 (63%), Gaps = 43/330 (13%)

Query: 1   MGAGDNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVS 60
           MG  +ND+MGF+  N+  MNC S M         M S            F+GSGW+P+VS
Sbjct: 1   MGDLENDEMGFRNSNDGLMNCPSTM--------AMGS------------FFGSGWDPLVS 40

Query: 61  LNQGESFGV-SSMVS-HNEFAPSYPVALENQGMSSTSNLD-QYSSDPSFVELVPKIPGFG 117
           L Q E++G  SSMVS H EF+ S+PV LEN G S T+    QY +D   +E+  K+P FG
Sbjct: 41  LGQSENYGAASSMVSSHGEFSNSFPVVLENHGGSGTTQQGVQYPTD---LEMGSKLPCFG 97

Query: 118 SGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGV 177
           SGNFSEM  SFG+    QI   GC  NY           +     S E+  +  E  + +
Sbjct: 98  SGNFSEMFGSFGVA--GQILG-GCSSNYR------NGGTTNTTQTSQENLPLAGEEILPL 148

Query: 178 AT---NGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANM 234
           +    NGK RKR  +S    +++K  +++L+KD SGDSS     Q+EK  ++EQN G N 
Sbjct: 149 SVGSPNGKIRKRGLDSTFPFSSNKKSDMKLKKDVSGDSS---STQEEKNAEMEQNLGGNS 205

Query: 235 RGKQAAKPTKD-SSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELV 292
           RGK   K TK+ SS S EAPKE YIH+RA+RGQATNSHSLAERVRREKISERMRLLQELV
Sbjct: 206 RGKSTGKQTKEKSSNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELV 265

Query: 293 PGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           PGCNKITGKAVMLDEIINYVQSLQQQVE L
Sbjct: 266 PGCNKITGKAVMLDEIINYVQSLQQQVEFL 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494803|ref|XP_003634844.1| PREDICTED: transcription factor bHLH74-like [Vitis vinifera] gi|296090643|emb|CBI41042.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 152/328 (46%), Positives = 194/328 (59%), Gaps = 30/328 (9%)

Query: 2   GAGDNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSL 61
           G+GD+   GF+ ++ S ++C S           +       S++G    +   ++P V L
Sbjct: 5   GSGDS---GFEHKDGSLLDCPS-----------LGIFTSLSSLNGVTSIFTGDYDPPVPL 50

Query: 62  -NQGESFGVSSMVSHNEFAPSYP-VALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSG 119
            +  +  G+  + +H++    Y   ALENQGMSST +L QYSSDP FVELVP  P F + 
Sbjct: 51  AHNADIIGLPPLKTHDQIDDLYAGNALENQGMSSTIHLTQYSSDPRFVELVPNFPHFSTA 110

Query: 120 NFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYE----RNSRNVSQSYEDHQICEEAAI 175
            FSEMV+   LP+   I   GCPP++   K G  +    +N  N     E  QI ++  +
Sbjct: 111 GFSEMVTPRCLPKCHNI---GCPPDHPLEKNGTRKTSNLQNKTNNCAQMEGCQIADDGTM 167

Query: 176 GVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMR 235
            ++   K RKR  +  S     KN+E    KD        L  QDE+KQK EQ   AN  
Sbjct: 168 ELSPIEKKRKRLADDRSQFAHLKNMEAAQPKDEC------LGRQDERKQKAEQKIVANNC 221

Query: 236 GKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPG 294
           GK      K SS +GEAPKE YIH+RAKRGQATNSHSLAERVRRE+ISERM+ LQ+LVPG
Sbjct: 222 GKLIGAEVKMSSQTGEAPKEDYIHVRAKRGQATNSHSLAERVRRERISERMKFLQDLVPG 281

Query: 295 CNKITGKAVMLDEIINYVQSLQQQVEVL 322
           CNKITGKAVMLDEIINYVQSLQ+QVE L
Sbjct: 282 CNKITGKAVMLDEIINYVQSLQRQVEFL 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2201906	366	AT1G10120 "AT1G10120" [Arabido	0.472	0.415	0.564	3.1e-35
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.242	0.171	0.782	6.6e-35
TAIR|locus:2152551	498	AT5G48560 "AT5G48560" [Arabido	0.223	0.144	0.833	9.5e-34
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.692	0.463	0.407	1.4e-32
UNIPROTKB|Q5VR96	437	P0038C05.31-1 "Os06g0275600 pr	0.708	0.521	0.4	1.8e-32
UNIPROTKB|Q69JJ6	428	OSJNBa0026C08.22 "TA1 protein-	0.670	0.504	0.390	6e-32
TAIR|locus:2205420	486	AT1G68920 [Arabidopsis thalian	0.481	0.318	0.491	8.8e-31
TAIR|locus:2095198	371	AT3G23690 "AT3G23690" [Arabido	0.723	0.628	0.391	2.3e-30
TAIR|locus:2028804	390	CIB5 "AT1G26260" [Arabidopsis	0.639	0.528	0.395	1e-29
UNIPROTKB|Q84QW1	405	OJ1191_A10.109 "BHLH transcrip	0.689	0.548	0.375	4.4e-29

TAIR|locus:2201906 AT1G10120 "AT1G10120" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 96/170 (56%), Positives = 110/170 (64%)

Query:   154 ERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSS 213
             ER  R    S+EDH    + A+ +  +   ++R PE+ S  N  K VE E Q+DP   + 
Sbjct:   117 ERLIRAGESSHEDHHQVSDDAV-LGASPVGKRRLPEAESQWNK-KAVE-EFQEDPQRGND 173

Query:   214 GILXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSL 272
                                N + K+     K+SS S EAPKE YIHMRA+RGQATNSHSL
Sbjct:   174 ------------QSQKKHKNDQSKETVN--KESSQSEEAPKENYIHMRARRGQATNSHSL 219

Query:   273 AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
             AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE L
Sbjct:   220 AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFL 269

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 6.6e-35, Sum P(2) = 6.6e-35
 Identities = 61/78 (78%), Positives = 72/78 (92%)

Query:   245 DSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVM 304
             D + S +  K+YIH+RA+RGQAT+SHSLAERVRREKISERM+LLQ+LVPGCNK+TGKA+M
Sbjct:   244 DKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALM 303

Query:   305 LDEIINYVQSLQQQVEVL 322
             LDEIINYVQSLQ+QVE L
Sbjct:   304 LDEIINYVQSLQRQVEFL 321

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2152551 AT5G48560 "AT5G48560" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 9.5e-34, Sum P(2) = 9.5e-34
 Identities = 60/72 (83%), Positives = 69/72 (95%)

Query:   251 EAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIIN 310
             E PK+YIH+RA+RGQAT+SHSLAERVRREKI ERM+LLQ+LVPGCNK+TGKA+MLDEIIN
Sbjct:   293 EPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIIN 352

Query:   311 YVQSLQQQVEVL 322
             YVQSLQ+QVE L
Sbjct:   353 YVQSLQRQVEFL 364

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 104/255 (40%), Positives = 134/255 (52%)

Query:    83 PVALENQGMSSTSNLDQYSSDPSFVELVPKIPGF------GSGNFSEM-VSSFGLPENAQ 135
             P+ LEN  +    +LDQ+ +DP F E   ++ GF      G G +     + FGLP+   
Sbjct:   103 PI-LEN--LMPMGHLDQFLADPGFAERAARLSGFDARGGGGGGGYGGAGPAQFGLPDAGA 159

Query:   136 IASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLN 195
               +S         KE     N+R+ S   +      E     A++G  RKR         
Sbjct:   160 AGAS---------KE-MELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRKASGKGK-G 208

Query:   196 TDKNVEVELQKDPSGDSSGI-LXXXXXXXXXXXXNTG------ANMRGKQAAKPTKDSSL 248
              D  +     K+   DSSG               N+G      +N       K  KDSS 
Sbjct:   209 KDSPMSTSAAKE---DSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSS 265

Query:   249 SG-EAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDE 307
                E PK+YIH+RA+RG+AT+SHSLAERVRREKIS+RM+LLQ+LVPGCNK+ GKAVMLDE
Sbjct:   266 KPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDE 325

Query:   308 IINYVQSLQQQVEVL 322
             IINYVQSLQ+QVE L
Sbjct:   326 IINYVQSLQRQVEFL 340

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 100/250 (40%), Positives = 127/250 (50%)

Query:    90 GMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSS-F-GLPENAQIASSGCPPNYVP 147
             GM S      + + P FV+     P +  GN   M++  F G+ +      +G  P    
Sbjct:    79 GMLSAGAPPPFVATPGFVDSTAGFPCYNGGNLGAMINHPFPGIHQPLGDFQNGVEP--CR 136

Query:   148 NKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKD 207
               E      S+NVSQ+ E  Q   E    V ++ K     P  N     D+   V   K 
Sbjct:   137 EIEDIEIEGSKNVSQTGEKQQGDGETTHAVDSSSKELSM-PGRNGGAGHDEGTRVSCSKK 195

Query:   208 P--SGDSSGI--------LXXXXXXXXXXXXNTGANMR-----GKQAAKPTKDSSLSGEA 252
                SG   G+        L              G   R     GK + K  KD++  G  
Sbjct:   196 RKRSGQDGGVKHAEGGEQLATVGSAQKNEDDEKGEPKRSSVASGKSSGKQIKDNA--GSP 253

Query:   253 PKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYV 312
              ++YIH+RA+RGQATNSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYV
Sbjct:   254 KEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYV 313

Query:   313 QSLQQQVEVL 322
             QSLQ+QVE L
Sbjct:   314 QSLQRQVEFL 323

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 89/228 (39%), Positives = 120/228 (52%)

Query:    97 LDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQ-IASSGCPPNYVPNKEGCYER 155
             L  +  D  F+E   +   FG G  +     +G  + A   A  G     + +       
Sbjct:    94 LGHFPVDSGFIERAARSTCFGGGMMAG--GPYGAADQAMGDAFGGTAEGLMDHHRNVGND 151

Query:   156 NSRNVSQSYEDHQICEEAAIG-VATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSG 214
              +   + +  D     E A G  ++ G   K+    N ++ TD+     L  D + +S  
Sbjct:   152 KAEEFAGNGHDEVPSSEVAGGDCSSKGSDSKKRRRPNEVMGTDQVHSSNLPSDSANES-- 209

Query:   215 ILXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAE 274
             +               G   +GK  AK T +S       +EYIH+RA+RGQATNSHSLAE
Sbjct:   210 VHSKDKGEESSPATTNGGKSKGK-GAKETSESQ-----KEEYIHVRARRGQATNSHSLAE 263

Query:   275 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
             R+RREKISERM+LLQ+LVPGC+K+TGKAVMLDEIINYVQSLQ+QVE L
Sbjct:   264 RLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFL 311

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 82/167 (49%), Positives = 104/167 (62%)

Query:   157 SRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNS-LLNTDKNVEVELQKDPSGDSSGI 215
             S NVS+  +      +     ++N K RKR  + NS    + ++ + E + D +GD    
Sbjct:   211 SGNVSEDTQSSGGNGQKGRETSSNTKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGDEKRN 270

Query:   216 LXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAER 275
                          N+G   +GKQ++ P KD          YIH+RA+RGQATNSHSLAER
Sbjct:   271 -DEQSPNSPGKKSNSG-KQQGKQSSDPPKDG---------YIHVRARRGQATNSHSLAER 319

Query:   276 VRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
             VRREKISERM+ LQ+LVPGCNK+TGKAVMLDEIINYVQSLQ+QVE L
Sbjct:   320 VRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFL 366

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2095198 AT3G23690 "AT3G23690" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 96/245 (39%), Positives = 127/245 (51%)

Query:    81 SYPVALENQGMSSTSNLDQYSSDPSFVELVP-KIPGFGSGNFSEMVSSFGLPENAQIASS 139
             S P    N+G      L +Y ++P   E+ P  +  F S N S++  +F  P +  I   
Sbjct:    19 SDPFGNGNEGTIGDF-LGRYCNNPQ--EISPLTLQSF-SLN-SQISENF--PISGGIRFP 71

Query:   140 GCPPNYVPNKE-GCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDK 198
               P  +  ++E G       +   S  D     +      +N + RK  P  N   +   
Sbjct:    72 PYPGQFGSDREFGSQPTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNGKESPAS 131

Query:   199 NVEVELQKDPSGDSSGILXXXXXXXXXXXXNTGANMRGKQAAK-PTKDSSLSGEAPKEYI 257
             +         SG++ G               +  N   K  +K   KD +   EAPK+YI
Sbjct:   132 SSLTASNSKVSGENGG--SKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYI 189

Query:   258 HMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQ 317
             H+RA+RGQAT+SHSLAER RREKISERM LLQ+LVPGCN+ITGKAVMLDEIINYVQSLQ+
Sbjct:   190 HVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQR 249

Query:   318 QVEVL 322
             QVE L
Sbjct:   250 QVEFL 254

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 93/235 (39%), Positives = 120/235 (51%)

Query:    96 NLDQYSSDPSFVELVPKIPGFGSGNF--SEMVSSFGLPENAQI------ASSGCPPNYVP 147
             N+ Q+ +D  F+E   K   FG G    ++  SS G+P++  +        SG   +  P
Sbjct:    73 NMAQFPADSGFIERAAKFSFFGCGEMMMNQQQSSLGVPDSTGLFLQDTQIPSGSKLDNGP 132

Query:   148 NKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKD 207
               +       R+++   ED Q         A  G+T  +   S       K+ E E  K 
Sbjct:   133 LTDASKLVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKK 192

Query:   208 PSGDSSGILXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQAT 267
                + S                + AN    +  K   DS   G     YIHMRA+RGQAT
Sbjct:   193 QKDEQSP--------------TSNANKTNSE--KQPSDSLKDG-----YIHMRARRGQAT 231

Query:   268 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
             NSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYVQSLQ Q+E L
Sbjct:   232 NSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFL 286

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0048513 "organ development" evidence=RCA

UNIPROTKB|Q84QW1 OJ1191_A10.109 "BHLH transcription factor(GBOF-1)-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 95/253 (37%), Positives = 127/253 (50%)

Query:    84 VALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPP 143
             VA    G      LD+   DP F E   ++  F +G    +   +G    A     G PP
Sbjct:    32 VAPGGGGGGGDCGLDKLCGDPGFAERAARLSSFNNGG-GGVGQRYG---GAGAGLFGMPP 87

Query:   144 NYVPNKEGCYERNSRNVSQ----SYEDHQICEE-----AAIGVATNGKTRK----RAPES 190
                 +  G   R + +VS     + +D     +     AA   A  GK ++       ES
Sbjct:    88 PAPGDFAGGGSREASSVSDPASSAMKDAAANAKKRKSTAAAAAAAKGKGKEPPVGEEKES 147

Query:   191 NSLLNTDKNVEVELQKDPSGDSSGILXXXXXXXXXXXXNTGANMRGK-QAAKPTKDSSLS 249
             +       N E E    P  + +G                G   +GK + AKP       
Sbjct:   148 DGKRCKTGNGEKESSVKPKAEQAG------SDSSVEDGGGGGQKQGKGKNAKPV------ 195

Query:   250 GEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEII 309
              E PK+Y+H+RA+RGQAT+SHSLAERVRRE+IS+RM++LQ+LVPGCNK+ GKA+MLDEII
Sbjct:   196 -EPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEII 254

Query:   310 NYVQSLQQQVEVL 322
             NYVQSLQ+QVE L
Sbjct:   255 NYVQSLQRQVEFL 267

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050553 hypothetical protein (407 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
smart00353	53	smart00353, HLH, helix loop helix domain	1e-11
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	1e-10
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	2e-08

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 271 SLAERVRREKISERMRLLQELVPGCNKITG--KAVMLDEIINYVQSLQQQVE 320
           +  ER RR KI+E    L+ L+P   K     KA +L   I Y++SLQ++++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 263 RGQATNSHSLAERVRREKISERMRLLQELVPGCNKITG--KAVMLDEIINYVQSLQQQVE 320
           R     +H+L ER RRE+I++    L+ L+P         KA +L + ++Y++SLQ+ ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQ 316
           +H+  ER RR++I++    L+EL+P     K++ KA +L   I Y++ LQ
Sbjct: 4   AHNERERRRRDRINDAFEELRELLPTPPNKKLS-KAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.41
smart00353	53	HLH helix loop helix domain.	99.35
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.33
KOG1318	411	consensus Helix loop helix transcription factor EB	99.11
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.76
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.5
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.12
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.85
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	97.62
KOG0561	373	consensus bHLH transcription factor [Transcription	97.48
PLN03217	93	transcription factor ATBS1; Provisional	97.16
KOG3960	284	consensus Myogenic helix-loop-helix transcription	96.93
KOG4029	228	consensus Transcription factor HAND2/Transcription	96.9
KOG3910	632	consensus Helix loop helix transcription factor [T	95.68
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	91.23
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	88.73
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	86.25

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.41  E-value=2.7e-13  Score=98.36  Aligned_cols=53  Identities=36%  Similarity=0.627  Sum_probs=49.0

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 020693          267 TNSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVE  320 (322)
Q Consensus       267 ~~~Hs~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq  320 (322)
                      ...|+..||+||++||+.|..|+.+||.+   .+ .+|+.||+.||+||+.|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence            45899999999999999999999999998   55 5999999999999999999874

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.35  E-value=1.9e-12  Score=92.55  Aligned_cols=50  Identities=38%  Similarity=0.546  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCC---CCCCCChhhHHHHHHHHHHHHHHHHHh
Q 020693          271 SLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVEV  321 (322)
Q Consensus       271 s~aERrRRekInerf~~Lr~LVP~---~~K~~dKAsIL~eAI~YIk~LQ~qVq~  321 (322)
                      +..||+||++||+.|..|+.|||.   ..+ .+|++||+.||+||++|+.+++.
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k-~~k~~iL~~ai~yi~~L~~~~~~   53 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKK-LSKAEILRLAIEYIKSLQEELQK   53 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999996   446 49999999999999999999873

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.33  E-value=1.6e-12  Score=94.32  Aligned_cols=48  Identities=40%  Similarity=0.724  Sum_probs=44.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCC-----CCCCChhhHHHHHHHHHHHHH
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGC-----NKITGKAVMLDEIINYVQSLQ  316 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~-----~K~~dKAsIL~eAI~YIk~LQ  316 (322)
                      ..|+..||+||++||+.|..|+.|||.+     .+ .+|++||+.||+||++||
T Consensus         3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k-~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRK-LSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSS-SSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchhcccccc-CCHHHHHHHHHHHHHHhC
Confidence            3799999999999999999999999987     45 599999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.11  E-value=6.7e-11  Score=117.88  Aligned_cols=65  Identities=29%  Similarity=0.544  Sum_probs=54.0

Q ss_pred             cccccccCCCcCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCC---CChhhHHHHHHHHHHHHHHHHH
Q 020693          256 YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQSLQQQVE  320 (322)
Q Consensus       256 ~~~~rakr~~a~~~Hs~aERrRRekInerf~~Lr~LVP~~~K~---~dKAsIL~eAI~YIk~LQ~qVq  320 (322)
                      ......|-+++++.|++.|||||++||++++.|..|||.|+..   .+|..||..+++||++||+..+
T Consensus       223 ~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  223 DATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             ccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            3333344455567999999999999999999999999999431   3799999999999999998766

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.76  E-value=7.5e-09  Score=94.78  Aligned_cols=53  Identities=36%  Similarity=0.609  Sum_probs=47.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCCCCC------CChhhHHHHHHHHHHHHHHHHH
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSLQQQVE  320 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~~K~------~dKAsIL~eAI~YIk~LQ~qVq  320 (322)
                      .+|..+||+||+.|+..+..|+.|||.|...      +.||.||..+|+||.+|.+++.
T Consensus        64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~  122 (229)
T KOG1319|consen   64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKK  122 (229)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999987532      3699999999999999998764

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.50  E-value=6.4e-08  Score=91.32  Aligned_cols=53  Identities=28%  Similarity=0.409  Sum_probs=46.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCCCCC-------CChhhHHHHHHHHHHHHHHHHH
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGCNKI-------TGKAVMLDEIINYVQSLQQQVE  320 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~~K~-------~dKAsIL~eAI~YIk~LQ~qVq  320 (322)
                      ..|.+.|||||+|||+.|..|++|||.+.++       .+||.||+-|++|++.||...+
T Consensus        34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~   93 (250)
T KOG4304|consen   34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ   93 (250)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence            3788999999999999999999999965332       3899999999999999997653

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.12  E-value=2.7e-06  Score=91.25  Aligned_cols=52  Identities=21%  Similarity=0.375  Sum_probs=47.3

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 020693          267 TNSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQSLQQQ  318 (322)
Q Consensus       267 ~~~Hs~aERrRRekInerf~~Lr~LVP~~~---K~~dKAsIL~eAI~YIk~LQ~q  318 (322)
                      ...|+.+|||||+++|..+.+|.+|||+|.   .+.||.+||..||..||.++++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            349999999999999999999999999997   3359999999999999998874

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.85  E-value=3.6e-05  Score=72.40  Aligned_cols=54  Identities=26%  Similarity=0.376  Sum_probs=46.5

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCC--ChhhHHHHHHHHHHHHHHHHH
Q 020693          267 TNSHSLAERVRREKISERMRLLQELVPGCNKIT--GKAVMLDEIINYVQSLQQQVE  320 (322)
Q Consensus       267 ~~~Hs~aERrRRekInerf~~Lr~LVP~~~K~~--dKAsIL~eAI~YIk~LQ~qVq  320 (322)
                      +..|+..||+||..|.+.|..|+.+||....-+  ..++||+.|+.||+.|+.+..
T Consensus        60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~  115 (232)
T KOG2483|consen   60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA  115 (232)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence            459999999999999999999999999654322  268999999999999998765

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=97.62  E-value=5.7e-05  Score=82.06  Aligned_cols=57  Identities=26%  Similarity=0.496  Sum_probs=50.2

Q ss_pred             CcCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHh
Q 020693          265 QATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEV  321 (322)
Q Consensus       265 ~a~~~Hs~aERrRRekInerf~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qVq~  321 (322)
                      ..+.+|+++|+|-|..||+++..|++|||+..-+..|..+|..||+||++||..-+.
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~  331 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQK  331 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccc
Confidence            446799999999999999999999999998754458999999999999999976543

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.48  E-value=5.6e-05  Score=73.84  Aligned_cols=53  Identities=26%  Similarity=0.436  Sum_probs=46.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCC--CCCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          269 SHSLAERVRREKISERMRLLQELVPG--CNKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       269 ~Hs~aERrRRekInerf~~Lr~LVP~--~~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      .-+..||||=.-||..|..||.|+|.  ..|+ .||.||+.+.+||.+|+.+.-+|
T Consensus        63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~Kt~l  117 (373)
T KOG0561|consen   63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHKTEL  117 (373)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhccccc
Confidence            55778999999999999999999995  4676 99999999999999999876443

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.16  E-value=0.00067  Score=55.67  Aligned_cols=44  Identities=30%  Similarity=0.581  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhcCCCC------CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          278 REKISERMRLLQELVPGC------NKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       278 RekInerf~~Lr~LVP~~------~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      -+.|++-+..||.|+|..      .++ .-+-+|+||.+||+.|+.+|..|
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdL   68 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDL   68 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999964      333 56779999999999999999765

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=96.93  E-value=0.0019  Score=61.98  Aligned_cols=54  Identities=24%  Similarity=0.334  Sum_probs=43.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          269 SHSLAERVRREKISERMRLLQEL-VPGCNKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       269 ~Hs~aERrRRekInerf~~Lr~L-VP~~~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      +-.+.||||=.|+||.|.+|+.- ++.-+.-.-|.-||-.||+||..||.-++++
T Consensus       121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~  175 (284)
T KOG3960|consen  121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQ  175 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            44578999999999999999763 4444443379999999999999999877653

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=96.90  E-value=0.0009  Score=61.63  Aligned_cols=53  Identities=21%  Similarity=0.298  Sum_probs=45.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHh
Q 020693          269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEV  321 (322)
Q Consensus       269 ~Hs~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq~  321 (322)
                      .++..||.|=+.+|..|..||.+||..   .|+..|..+|-.||.||++|+.-++.
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~  167 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLAT  167 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcc
Confidence            566679999999999999999999942   33349999999999999999987653

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=95.68  E-value=0.008  Score=62.37  Aligned_cols=54  Identities=26%  Similarity=0.313  Sum_probs=46.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCC---CCCCCChhhHHHHHHHHHHHHHHHHHh
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVEV  321 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~---~~K~~dKAsIL~eAI~YIk~LQ~qVq~  321 (322)
                      ...+..||.|=..|||.|++|-.+.-.   ..|..-|..||..||.-|-.|++||++
T Consensus       528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999988653   233335999999999999999999986

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=91.23  E-value=0.11  Score=47.01  Aligned_cols=48  Identities=25%  Similarity=0.421  Sum_probs=41.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 020693          269 SHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQ  317 (322)
Q Consensus       269 ~Hs~aERrRRekInerf~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~  317 (322)
                      -|++-||+|-..+|+.|.+||.++|..  .|+ .|.--|.-|-.||-+|=.
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~  130 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQ  130 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhh
Confidence            789999999999999999999999964  565 788889999999988743

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=88.73  E-value=0.27  Score=53.10  Aligned_cols=45  Identities=29%  Similarity=0.366  Sum_probs=37.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHH
Q 020693          269 SHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQS  314 (322)
Q Consensus       269 ~Hs~aERrRRekInerf~~Lr~LVP~~----~K~~dKAsIL~eAI~YIk~  314 (322)
                      .-.-+-|.||.|-|+-|.+|..+||--    ..+ |||+|+--||-|++-
T Consensus        49 kSRdAARsRRsKEn~~FyeLa~~lPlp~aisshL-DkaSimRLtISyLRl   97 (768)
T KOG3558|consen   49 KSRDAARSRRSKENEEFYELAKLLPLPAAISSHL-DKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhhhhcccchHHHHHHHHhCCCcchhhhhh-hhHHHHHHHHHHHHH
Confidence            334568999999999999999999932    344 999999999999873

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=86.25  E-value=0.67  Score=49.21  Aligned_cols=40  Identities=20%  Similarity=0.419  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCC----CCCCCChhhHHHHHHHHHHH
Q 020693          274 ERVRREKISERMRLLQELVPG----CNKITGKAVMLDEIINYVQS  314 (322)
Q Consensus       274 ERrRRekInerf~~Lr~LVP~----~~K~~dKAsIL~eAI~YIk~  314 (322)
                      -+|-|+|+|-.+..|..|+|-    ++|+ ||.+||--++-|++.
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLRV   76 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHHH
Confidence            456689999999999999994    5787 999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	5e-17
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	8e-09
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	5e-07
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	6e-07
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	6e-07

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 73.6 bits (181), Expect = 5e-17
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 262 KRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEV 321
            RG+   +H+  E+  R  I++++  L++LV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 322 L 322
           L
Sbjct: 62  L 62

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 50.4 bits (121), Expect = 8e-09
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCNKITG-----KAVMLDEIINYVQSLQQQVE 320
            H+  ER RR+KI+  +  L +++P  +  +      K  +L +  +Y+Q L+Q   
Sbjct: 8   QHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQQVEVL 322
            H+  ER RR+ I +    L++ VP     K + +A +LD+   Y+Q ++++    
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKAS-RAQILDKATEYIQYMRRKNHTH 59

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 258 HMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQS 314
           HM  KR     +H++ ER RR ++      L++ +P      K   K V+L +   Y+ S
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAP-KVVILKKATAYILS 56

Query: 315 LQQQVEVL 322
           +Q + + L
Sbjct: 57  VQAEEQKL 64

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCNKI-TGKAVMLDEIINYVQSLQQQVEVL 322
            H+  ER RR+ I +    L++ VP        +A +LD+   Y+Q ++++    
Sbjct: 15  HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.63
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.6
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.56
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.55
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.53
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.51
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.42
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.42
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.4
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.39
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.23
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.0
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.97
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.96
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.85
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.51
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.51
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.89

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.63  E-value=2.3e-16  Score=131.65  Aligned_cols=67  Identities=30%  Similarity=0.454  Sum_probs=48.0

Q ss_pred             cccccccCCCcCCCcchhHHHHHHHHHHHHHHHHhcCCCCCC---CCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          256 YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       256 ~~~~rakr~~a~~~Hs~aERrRRekInerf~~Lr~LVP~~~K---~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      ..+..+++.+.+.+|+++||+||++||++|..|++|||.|.+   .++|++||+.||+||++||.+++.|
T Consensus        17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l   86 (118)
T 4ati_A           17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA   86 (118)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677788888999999999999999999999999999863   2489999999999999999998864

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.60  E-value=2.1e-16  Score=124.04  Aligned_cols=56  Identities=27%  Similarity=0.445  Sum_probs=51.3

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          267 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       267 ~~~Hs~aERrRRekInerf~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      ..+|+++||+||++||++|.+|++|||++...++|++||++||+||++||.+++.|
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L   62 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL   62 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999998433599999999999999999999875

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.56  E-value=6.2e-16  Score=116.47  Aligned_cols=54  Identities=30%  Similarity=0.441  Sum_probs=48.2

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhcCCCCCCC------CChhhHHHHHHHHHHHHHHHHH
Q 020693          267 TNSHSLAERVRREKISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSLQQQVE  320 (322)
Q Consensus       267 ~~~Hs~aERrRRekInerf~~Lr~LVP~~~K~------~dKAsIL~eAI~YIk~LQ~qVq  320 (322)
                      ..+|+++||+||++||..|..|+.|||.+.+.      .+||+||+.||+||+.||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            35999999999999999999999999976331      3699999999999999999875

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.55  E-value=1.2e-15  Score=114.08  Aligned_cols=55  Identities=27%  Similarity=0.432  Sum_probs=49.5

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHhcCCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 020693          266 ATNSHSLAERVRREKISERMRLLQELVPGCNK-----ITGKAVMLDEIINYVQSLQQQVE  320 (322)
Q Consensus       266 a~~~Hs~aERrRRekInerf~~Lr~LVP~~~K-----~~dKAsIL~eAI~YIk~LQ~qVq  320 (322)
                      ....|+++||+||++||+.|..|++|||.|..     .++|++||+.||+||++||.+++
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            45699999999999999999999999999862     24999999999999999998764

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.53  E-value=4.8e-15  Score=114.63  Aligned_cols=56  Identities=20%  Similarity=0.385  Sum_probs=49.8

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          267 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       267 ~~~Hs~aERrRRekInerf~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      ..+|+++||+||++||++|..|+.|||.+....||++||+.||+||+.||.++.-|
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~   64 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL   64 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence            45999999999999999999999999976533599999999999999999987543

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.51  E-value=2e-15  Score=117.01  Aligned_cols=52  Identities=31%  Similarity=0.521  Sum_probs=47.3

Q ss_pred             CcCCCcchhHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHHH
Q 020693          265 QATNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQ  317 (322)
Q Consensus       265 ~a~~~Hs~aERrRRekInerf~~Lr~LVP~~----~K~~dKAsIL~eAI~YIk~LQ~  317 (322)
                      +++..|+++||+||++||+.|.+|+.|||.|    .|+ |||+||+.||+||+.||.
T Consensus         8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence            4456999999999999999999999999987    575 999999999999999973

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.42  E-value=8.3e-14  Score=108.25  Aligned_cols=54  Identities=28%  Similarity=0.506  Sum_probs=50.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      ..|+..||+||.+||+.|..|+.|||.+  .| .+|+.||..||+||+.||.+++.|
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L   69 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999987  46 499999999999999999999865

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.42  E-value=1e-13  Score=108.09  Aligned_cols=54  Identities=28%  Similarity=0.506  Sum_probs=49.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      ..|+..||+||++||+.|..|+++||.+  .| .+|++||..||+||++||.+++.|
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l   59 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999985  66 499999999999999999887754

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.40  E-value=1.6e-13  Score=109.14  Aligned_cols=53  Identities=26%  Similarity=0.471  Sum_probs=48.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHh
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEV  321 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq~  321 (322)
                      ..|+..||+||++||++|..|+++||.+   .| .+|++||..||+||+.|+.+.+.
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K-~sK~~iL~~A~~YI~~L~~~~~~   63 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEK-APKVVILKKATAYILSVQAEEQK   63 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTT-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999986   46 49999999999999999988764

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.39  E-value=2.7e-13  Score=105.67  Aligned_cols=55  Identities=29%  Similarity=0.392  Sum_probs=47.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      ..|+..||+||+.||++|..|+.+||.+   .|...|+.||..||+||++||++|+++
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~   64 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRER   64 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999953   343368899999999999999999975

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.23  E-value=8.7e-12  Score=97.80  Aligned_cols=53  Identities=19%  Similarity=0.248  Sum_probs=48.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       269 ~Hs~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      .|+..||+||..|++.|..|+++||.+   .| ..|+.||..||+||+.|+.+.+.|
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l   59 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKA   59 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999965   45 489999999999999999988653

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.00  E-value=2.9e-10  Score=86.95  Aligned_cols=52  Identities=23%  Similarity=0.413  Sum_probs=47.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVE  320 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qVq  320 (322)
                      ..|+..||+|+..||+.|..|+++||..  .|+ +|+.||..||+||+.||..++
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence            4799999999999999999999999964  454 899999999999999998765

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.97  E-value=4.6e-10  Score=105.58  Aligned_cols=52  Identities=19%  Similarity=0.430  Sum_probs=41.6

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHhcCC-CCCCCCChhhHHHHHHHHHHHHHHH
Q 020693          266 ATNSHSLAERVRREKISERMRLLQELVP-GCNKITGKAVMLDEIINYVQSLQQQ  318 (322)
Q Consensus       266 a~~~Hs~aERrRRekInerf~~Lr~LVP-~~~K~~dKAsIL~eAI~YIk~LQ~q  318 (322)
                      ...+|+++||+||++||+.|..|+.||| ...|+ ||++||..||+||+.|+..
T Consensus        12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhh
Confidence            3458999999999999999999999999 44575 9999999999999999865

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.96  E-value=7.7e-10  Score=82.62  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=46.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 020693          269 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQQVE  320 (322)
Q Consensus       269 ~Hs~aERrRRekInerf~~Lr~LVP~~~--K~~dKAsIL~eAI~YIk~LQ~qVq  320 (322)
                      .|+..||+|+..||+.|..|+.+||...  ++..|+.+|..||+||..||..++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999653  234999999999999999999875

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.85  E-value=8.7e-10  Score=105.11  Aligned_cols=53  Identities=28%  Similarity=0.417  Sum_probs=47.3

Q ss_pred             CCcCCCcchhHHHHHHHHHHHHHHHHhcCC----CCCCCCChhhHHHHHHHHHHHHHH
Q 020693          264 GQATNSHSLAERVRREKISERMRLLQELVP----GCNKITGKAVMLDEIINYVQSLQQ  317 (322)
Q Consensus       264 ~~a~~~Hs~aERrRRekInerf~~Lr~LVP----~~~K~~dKAsIL~eAI~YIk~LQ~  317 (322)
                      ++++.+|+.+||+||++||+.|..|+.|||    ...|+ ||++||..||+|||.|+.
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHC
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhc
Confidence            334569999999999999999999999999    45675 999999999999999974

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.51  E-value=9.5e-08  Score=76.02  Aligned_cols=44  Identities=27%  Similarity=0.505  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCC---CCChhhHHHHHHHHHHHHHHHHHh
Q 020693          278 REKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEV  321 (322)
Q Consensus       278 RekInerf~~Lr~LVP~~~K---~~dKAsIL~eAI~YIk~LQ~qVq~  321 (322)
                      |..||+++..|..|||.+..   ..+|++||..||+||++||++++.
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r   50 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQR   50 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999998643   148999999999999999987654

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.51  E-value=4e-08  Score=75.59  Aligned_cols=45  Identities=24%  Similarity=0.438  Sum_probs=40.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHH
Q 020693          272 LAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQ  317 (322)
Q Consensus       272 ~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~  317 (322)
                      ..||+|+..||+.|..||.+||..   .|+ .|..+|..||+||..||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence            458999999999999999999965   454 899999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.89  E-value=2.3e-05  Score=63.87  Aligned_cols=47  Identities=26%  Similarity=0.415  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHh
Q 020693          274 ERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEV  321 (322)
Q Consensus       274 ERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq~  321 (322)
                      ||.|=..||+.|..||.+||..   .|+ .|.-+|..||+||+.||..++.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKL-SKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKV-SKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcc-cHHHHHHHHHHHHHHHHHHHhc
Confidence            5778889999999999999965   354 8999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	3e-14
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	4e-14
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	4e-13
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	5e-13
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	1e-12
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	6e-11
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	9e-11
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	6e-10

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (158), Expect = 3e-14
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 262 KRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEV 321
            RG+   +H+  E+  R  I++++  L++LV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 322 L 322
           L
Sbjct: 62  L 62

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (156), Expect = 4e-14
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 278 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL 322
           R  I++++  L++LV G +    K+ +L + I+Y++ LQQ    L
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKL 45

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 4e-13
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 258 HMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSL 315
           HM  KR     +H++ ER RR ++      L++ +P    N+   K V+L +   Y+ S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 316 QQQVEVL 322
           Q + + L
Sbjct: 58  QAEEQKL 64

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.0 bits (148), Expect = 5e-13
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 259 MRAKRGQAT----NSHSLAERVRREKISERMRLLQELVPGC-NKITGKAVMLDEIINYVQ 313
           M  KR         + ++ ER R  K++E    L+       N+   K  +L   I Y++
Sbjct: 1   MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIE 60

Query: 314 SLQQQVE 320
            LQ  + 
Sbjct: 61  GLQALLR 67

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (145), Expect = 1e-12
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCNKITG------KAVMLDEIINYVQSLQQQVE 320
           SH  AE+ RR +++  +  L  L+P   K         KA  ++    Y++ LQQ   
Sbjct: 5   SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 6e-11
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 268 NSHSLAERVRREKISERMRLLQELVPGCNKITG-----KAVMLDEIINYVQSLQQQVE 320
             H+  ER RR+KI+  +  L +++P  +  +      K  +L +  +Y+Q L+Q   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 9e-11
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGC-NKITGKAVMLDEIINYVQSLQQQVEVL 322
            H+  ER RR+ I +    L++ VP    +   +A +LD+   Y+Q ++++    
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 59

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 6e-10
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCNKI--TGKAVMLDEIINYVQSLQQQVEVL 322
           +H+  E+ RR  +   +  L+ LVP            +L +   +++ L+      
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.5
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.48
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.4
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.37
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.34

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=6.1e-15  Score=108.46  Aligned_cols=52  Identities=29%  Similarity=0.469  Sum_probs=47.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCC-------CCCCChhhHHHHHHHHHHHHHHHHH
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGC-------NKITGKAVMLDEIINYVQSLQQQVE  320 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~-------~K~~dKAsIL~eAI~YIk~LQ~qVq  320 (322)
                      ..|+++||+||++||+.|..|++|||.+       .| .+|+.||+.||+||++||++|.
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k-~sKa~iL~~Av~yI~~Lq~~v~   62 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAA-PSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCC-SCTTHHHHHHHHHHHHHHTCSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCccc-ccHHHHHHHHHHHHHHHHHhhc
Confidence            4899999999999999999999999953       45 4999999999999999998874

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.3e-15  Score=112.06  Aligned_cols=55  Identities=27%  Similarity=0.454  Sum_probs=51.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      ..|+.+||+||++||+.|..|++|||++...++|++||..||+||+.|+.+++.|
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L   62 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL   62 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999998655699999999999999999998764

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.6e-15  Score=111.58  Aligned_cols=54  Identities=22%  Similarity=0.322  Sum_probs=48.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCCC-CCCChhhHHHHHHHHHHHHHHHHHh
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGCN-KITGKAVMLDEIINYVQSLQQQVEV  321 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~~-K~~dKAsIL~eAI~YIk~LQ~qVq~  321 (322)
                      ..|+..||+||++||+.|..|++|||.+. +..+|++||+.||+||++||++|++
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~e   68 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            47999999999999999999999999874 2259999999999999999998864

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=9e-14  Score=105.53  Aligned_cols=54  Identities=19%  Similarity=0.238  Sum_probs=49.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~~---K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      ..|+..||+||++||+.|..|++|||.+.   | .+|++||..||+||+.|+.+++.|
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l   59 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKA   59 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999763   4 599999999999999999998753

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.8e-14  Score=104.76  Aligned_cols=51  Identities=29%  Similarity=0.500  Sum_probs=46.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCCC------CCCChhhHHHHHHHHHHHHHHHH
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGCN------KITGKAVMLDEIINYVQSLQQQV  319 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~~------K~~dKAsIL~eAI~YIk~LQ~qV  319 (322)
                      ..|+.+||+||++||+.|..|++|||.+.      + .+|+.||..||+||+.||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k-~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSG-QSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTC-CCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCHHHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999999764      5 489999999999999999764

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-13  Score=104.85  Aligned_cols=54  Identities=28%  Similarity=0.506  Sum_probs=48.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      ..|+.+||+||++||+.|..|++|||.+  .+ .+|++||..||+||+.|+.+++.|
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l   59 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999975  45 599999999999999999987653

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-13  Score=105.95  Aligned_cols=54  Identities=28%  Similarity=0.487  Sum_probs=49.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       268 ~~Hs~aERrRRekInerf~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      ..|+.+||+||++||+.|..|++|||.+   .| .+|+.||..||+||++|+.+++.|
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l   64 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEK-APKVVILKKATAYILSVQAEEQKL   64 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTT-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999975   34 489999999999999999998764

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-13  Score=101.16  Aligned_cols=45  Identities=31%  Similarity=0.456  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhC
Q 020693          278 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVL  322 (322)
Q Consensus       278 RekInerf~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qVq~L  322 (322)
                      |++||++|.+|++|||++.++++||+||.+||+||+.||.+++.|
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L   45 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKL   45 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999998744699999999999999999999875